Transient

Executioner for time varying simulations.

Normal Usage

The Transient Executioner is the primary workhorse Executioner in MOOSE. Most simulations will use it.

At its most basic the Transient Executioner allows a simulation to step through multiple steps in _time_... doing one nonlinear solve per timestep. Most of the time this type of execution will utilize one or more TimeDerivative Kernels on the variables to solve for their time evolution.

Primary Parameters

The most important parameters for Transient (beyond what Steady already provides) are:

- dt: The initial timestep size - num_steps: Number of steps to do - end_time: Finish time for the simulation - scheme: The TimeIntegrator to use (see below) - defaults to Implicit/Backward Euler.

See down below for the full list of parameters for this class.

TimeIntegrators

It's important to note that transient simulations generally use a TimeIntegrator. As mentioned above, there is a scheme parameter that is shortcut syntax for selection of that TimeIntegrator. However, there is also a whole TimeIntegrator system for creating your own or specifying detailed parameters for time integration.

TimeSteppers

Similarly, the choice of how to move through time (the choice of timestep size) is important as well. The default TimeStepper is ConstantDT but many other choices can be made using the TimeStepper system.

Load Steps

Transient can also be used for simulations that don't necessarily need _time_. In this context a "transient" calculation can simply be thought of as a series of nonlinear solves. The time parameter will move forward - but what you do with it, or what it means is up to you.

One good example of this is doing "load steps" for a solid mechanics calculation. If the only thing that is desired is the final, steady state, solution, but getting to it is extremely difficult, then you might employ "load steps" to slowly ramp up a boundary condition so you can more easily solve from the initial state (the "initial condition") to the final configuration. In this case you would use "time" as a parameter to control how much of the force is applied (for instance, by using FunctionDirichletBC).

In this case you don't use any TimeDerivative Kernels. The "transient" behavior comes from changing a condition based on "time". What that "time" means is up to you to identify (generally, I like to just step through time = 1,2,3,4.. and define my functions so that at time = end_steps the full load is applied.

Quasi-Transient

Similarly to Load Steps, you can use Transient to do "Quasi-Transient" calculations. This is where some variables are evolving with time derivatives, while others are solved to steady state each step.

A classic example of this is doing coupled thermo-mechanics. It's very normal for the heat flow to move much more slowly than the solid mechanics. Therefore, classically, it is normal to have a time derivative for your heat conduction equation but none for the solid mechanics so that at each timestep the solid-mechanics is solved to a full steady state based on the current configuration of heat.

This idea works perfectly in MOOSE with Transient: just simply only apply TimeDerivative Kernels to the equations you want and leave them off for the others.

Solving To Steady State

Another use-case is to use Transient to solve to a steady state. In this case there are a few built-in parameters to help detect steady state and stop the solve when it's reached. You can see them down below in the "Steady State Detection Parameters" section.

It is important to know that you must turn _on_ steady state detection using steady_state_detection = true before the other two parameters will do anything. The parameter steady_state_tolerance corresponds to $var element = document.getElementById("moose-equation-ab5e6935-f002-4c91-9c92-1bd7adb74257");katex.render("\\tau", element, {displayMode:false,throwOnError:false,macros:{"\\pf":"\\frac{\\partial #1}{\\partial #2}"}});$ in the following steady-state convergence criteria: $var element = document.getElementById("moose-equation-d08b5b04-15a5-437b-8e59-5c7e367c1052");katex.render(" \\frac{\\|u^{n+1} - u^n\\|}{\\Delta t} < \\tau \\|u\\|^{n+1} \\,.", element, {displayMode:true,throwOnError:false,macros:{"\\pf":"\\frac{\\partial #1}{\\partial #2}"}});$

Input Parameters

contact_line_search_allowed_lambda_cuts2The number of times lambda is allowed to be cut in half in the contact line search. We recommend this number be roughly bounded by 0 <= allowed_lambda_cuts <= 3
Default:2
C++ Type:unsigned int
Options:
Description:The number of times lambda is allowed to be cut in half in the contact line search. We recommend this number be roughly bounded by 0 <= allowed_lambda_cuts <= 3
contact_line_search_ltolThe linear relative tolerance to be used while the contact state is changing between non-linear iterations. We recommend that this tolerance be looser than the standard linear tolerance
C++ Type:double
Options:
Description:The linear relative tolerance to be used while the contact state is changing between non-linear iterations. We recommend that this tolerance be looser than the standard linear tolerance
dt1The timestep size between solves
Default:1
C++ Type:double
Options:
Description:The timestep size between solves
end_time1e+30The end time of the simulation
Default:1e+30
C++ Type:double
Options:
Description:The end time of the simulation
line_searchdefaultSpecifies the line search type (Note: none = basic)
Default:default
C++ Type:MooseEnum
Options:basic bt contact cp default l2 none project shell
Description:Specifies the line search type (Note: none = basic)
line_search_packagepetscThe solver package to use to conduct the line-search
Default:petsc
C++ Type:MooseEnum
Options:petsc moose
Description:The solver package to use to conduct the line-search
max_xfem_update4294967295Maximum number of times to update XFEM crack topology in a step due to evolving cracks
Default:4294967295
C++ Type:unsigned int
Options:
Description:Maximum number of times to update XFEM crack topology in a step due to evolving cracks
mffd_typewpSpecifies the finite differencing type for Jacobian-free solve types. Note that the default is wp (for Walker and Pernice).
Default:wp
C++ Type:MooseEnum
Options:wp ds
Description:Specifies the finite differencing type for Jacobian-free solve types. Note that the default is wp (for Walker and Pernice).
nl_div_tol-1Nonlinear Divergence Tolerance
Default:-1
C++ Type:double
Options:
Description:Nonlinear Divergence Tolerance
num_steps4294967295The number of timesteps in a transient run
Default:4294967295
C++ Type:unsigned int
Options:
Description:The number of timesteps in a transient run
petsc_optionsSingleton PETSc options
C++ Type:MultiMooseEnum
Options:-dm_moose_print_embedding -dm_view -ksp_converged_reason -ksp_gmres_modifiedgramschmidt -ksp_monitor -ksp_monitor_snes_lg-snes_ksp_ew -ksp_snes_ew -snes_converged_reason -snes_ksp -snes_ksp_ew -snes_linesearch_monitor -snes_mf -snes_mf_operator -snes_monitor -snes_test_display -snes_view
Description:Singleton PETSc options
petsc_options_inameNames of PETSc name/value pairs
C++ Type:MultiMooseEnum
Options:-ksp_atol -ksp_gmres_restart -ksp_max_it -ksp_pc_side -ksp_rtol -ksp_type -mat_fd_coloring_err -mat_fd_type -mat_mffd_type -pc_asm_overlap -pc_factor_levels -pc_factor_mat_ordering_type -pc_hypre_boomeramg_grid_sweeps_all -pc_hypre_boomeramg_max_iter -pc_hypre_boomeramg_strong_threshold -pc_hypre_type -pc_type -snes_atol -snes_linesearch_type -snes_ls -snes_max_it -snes_rtol -snes_divergence_tolerance -snes_type -sub_ksp_type -sub_pc_type
Description:Names of PETSc name/value pairs
petsc_options_valueValues of PETSc name/value pairs (must correspond with "petsc_options_iname"
C++ Type:std::vector
Options:
Description:Values of PETSc name/value pairs (must correspond with "petsc_options_iname"
reset_dtFalseUse when restarting a calculation to force a change in dt.
Default:False
C++ Type:bool
Options:
Description:Use when restarting a calculation to force a change in dt.
schemeimplicit-eulerTime integration scheme used.
Default:implicit-euler
C++ Type:MooseEnum
Options:implicit-euler explicit-euler crank-nicolson bdf2 explicit-midpoint dirk explicit-tvd-rk-2 newmark-beta
Description:Time integration scheme used.
skip_exception_checkFalseSpecifies whether or not to skip exception check
Default:False
C++ Type:bool
Options:
Description:Specifies whether or not to skip exception check
solve_typePJFNK: Preconditioned Jacobian-Free Newton Krylov JFNK: Jacobian-Free Newton Krylov NEWTON: Full Newton Solve FD: Use finite differences to compute Jacobian LINEAR: Solving a linear problem
C++ Type:MooseEnum
Options:PJFNK JFNK NEWTON FD LINEAR
Description:PJFNK: Preconditioned Jacobian-Free Newton Krylov JFNK: Jacobian-Free Newton Krylov NEWTON: Full Newton Solve FD: Use finite differences to compute Jacobian LINEAR: Solving a linear problem
splittingTop-level splitting defining a hierarchical decomposition into subsystems to help the solver.
C++ Type:std::vector
Options:
Description:Top-level splitting defining a hierarchical decomposition into subsystems to help the solver.
update_xfem_at_timestep_beginFalseShould XFEM update the mesh at the beginning of the timestep
Default:False
C++ Type:bool
Options:
Description:Should XFEM update the mesh at the beginning of the timestep
verboseFalseSet to true to print additional information
Default:False
C++ Type:bool
Options:
Description:Set to true to print additional information

Optional Parameters

abort_on_solve_failFalseabort if solve not converged rather than cut timestep
Default:False
C++ Type:bool
Options:
Description:abort if solve not converged rather than cut timestep
control_tagsAdds user-defined labels for accessing object parameters via control logic.
C++ Type:std::vector
Options:
Description:Adds user-defined labels for accessing object parameters via control logic.
dtmax1e+30The maximum timestep size in an adaptive run
Default:1e+30
C++ Type:double
Options:
Description:The maximum timestep size in an adaptive run
dtmin2e-14The minimum timestep size in an adaptive run
Default:2e-14
C++ Type:double
Options:
Description:The minimum timestep size in an adaptive run
enableTrueSet the enabled status of the MooseObject.
Default:True
C++ Type:bool
Options:
Description:Set the enabled status of the MooseObject.
n_startup_steps0The number of timesteps during startup
Default:0
C++ Type:int
Options:
Description:The number of timesteps during startup
start_time0The start time of the simulation
Default:0
C++ Type:double
Options:
Description:The start time of the simulation
timestep_tolerance2e-14the tolerance setting for final timestep size and sync times
Default:2e-14
C++ Type:double
Options:
Description:the tolerance setting for final timestep size and sync times
use_multiapp_dtFalseIf true then the dt for the simulation will be chosen by the MultiApps. If false (the default) then the minimum over the master dt and the MultiApps is used
Default:False
C++ Type:bool
Options:
Description:If true then the dt for the simulation will be chosen by the MultiApps. If false (the default) then the minimum over the master dt and the MultiApps is used

Advanced Parameters

accept_on_max_picard_iterationFalseTrue to treat reaching the maximum number of Picard iterations as converged.
Default:False
C++ Type:bool
Options:
Description:True to treat reaching the maximum number of Picard iterations as converged.
disable_picard_residual_norm_checkFalseDisable the Picard residual norm evaluation thus the three parameters picard_rel_tol, picard_abs_tol and picard_force_norms.
Default:False
C++ Type:bool
Options:
Description:Disable the Picard residual norm evaluation thus the three parameters picard_rel_tol, picard_abs_tol and picard_force_norms.
picard_abs_tol1e-50The absolute nonlinear residual to shoot for during Picard iterations. This check is performed based on the Master app's nonlinear residual.
Default:1e-50
C++ Type:double
Options:
Description:The absolute nonlinear residual to shoot for during Picard iterations. This check is performed based on the Master app's nonlinear residual.
picard_force_normsFalseForce the evaluation of both the TIMESTEP_BEGIN and TIMESTEP_END norms regardless of the existance of active MultiApps with those execute_on flags, default: false.
Default:False
C++ Type:bool
Options:
Description:Force the evaluation of both the TIMESTEP_BEGIN and TIMESTEP_END norms regardless of the existance of active MultiApps with those execute_on flags, default: false.
picard_max_its1Specifies the maximum number of Picard iterations. Mainly used when wanting to do Picard iterations with MultiApps that are set to execute_on timestep_end or timestep_begin. Setting this parameter to 1 turns off the Picard iterations.
Default:1
C++ Type:unsigned int
Options:
Description:Specifies the maximum number of Picard iterations. Mainly used when wanting to do Picard iterations with MultiApps that are set to execute_on timestep_end or timestep_begin. Setting this parameter to 1 turns off the Picard iterations.
picard_rel_tol1e-08The relative nonlinear residual drop to shoot for during Picard iterations. This check is performed based on the Master app's nonlinear residual.
Default:1e-08
C++ Type:double
Options:
Description:The relative nonlinear residual drop to shoot for during Picard iterations. This check is performed based on the Master app's nonlinear residual.
relaxation_factor1Fraction of newly computed value to keep.Set between 0 and 2.
Default:1
C++ Type:double
Options:
Description:Fraction of newly computed value to keep.Set between 0 and 2.
relaxed_variablesList of variables to relax during Picard Iteration
C++ Type:std::vector
Options:
Description:List of variables to relax during Picard Iteration

Picard Parameters

automatic_scalingFalseWhether to use automatic scaling for the variables.
Default:False
C++ Type:bool
Options:
Description:Whether to use automatic scaling for the variables.
compute_initial_residual_before_preset_bcsFalseUse the residual norm computed *before* preset BCs are imposed in relative convergence check
Default:False
C++ Type:bool
Options:
Description:Use the residual norm computed *before* preset BCs are imposed in relative convergence check
compute_scaling_onceTrueWhether the scaling factors should only be computed once at the beginning of the simulation through an extra Jacobian evaluation. If this is set to false, then the scaling factors will be computed during an extra Jacobian evaluation at the beginning of every time step.
Default:True
C++ Type:bool
Options:
Description:Whether the scaling factors should only be computed once at the beginning of the simulation through an extra Jacobian evaluation. If this is set to false, then the scaling factors will be computed during an extra Jacobian evaluation at the beginning of every time step.
l_abs_tol1e-50Linear Absolute Tolerance
Default:1e-50
C++ Type:double
Options:
Description:Linear Absolute Tolerance
l_max_its10000Max Linear Iterations
Default:10000
C++ Type:unsigned int
Options:
Description:Max Linear Iterations
l_tol1e-05Linear Tolerance
Default:1e-05
C++ Type:double
Options:
Description:Linear Tolerance
nl_abs_step_tol1e-50Nonlinear Absolute step Tolerance
Default:1e-50
C++ Type:double
Options:
Description:Nonlinear Absolute step Tolerance
nl_abs_tol1e-50Nonlinear Absolute Tolerance
Default:1e-50
C++ Type:double
Options:
Description:Nonlinear Absolute Tolerance
nl_max_funcs10000Max Nonlinear solver function evaluations
Default:10000
C++ Type:unsigned int
Options:
Description:Max Nonlinear solver function evaluations
nl_max_its50Max Nonlinear Iterations
Default:50
C++ Type:unsigned int
Options:
Description:Max Nonlinear Iterations
nl_rel_step_tol1e-50Nonlinear Relative step Tolerance
Default:1e-50
C++ Type:double
Options:
Description:Nonlinear Relative step Tolerance
nl_rel_tol1e-08Nonlinear Relative Tolerance
Default:1e-08
C++ Type:double
Options:
Description:Nonlinear Relative Tolerance
num_grids1The number of grids to use for a grid sequencing algorithm. This includes the final grid, so num_grids = 1 indicates just one solve in a time-step
Default:1
C++ Type:unsigned int
Options:
Description:The number of grids to use for a grid sequencing algorithm. This includes the final grid, so num_grids = 1 indicates just one solve in a time-step
snesmf_reuse_baseTrueSpecifies whether or not to reuse the base vector for matrix-free calculation
Default:True
C++ Type:bool
Options:
Description:Specifies whether or not to reuse the base vector for matrix-free calculation

Solver Parameters

Restart Parameters

steady_state_detectionFalseWhether or not to check for steady state conditions
Default:False
C++ Type:bool
Options:
Description:Whether or not to check for steady state conditions
steady_state_start_time0Minimum amount of time to run before checking for steady state conditions.
Default:0
C++ Type:double
Options:
Description:Minimum amount of time to run before checking for steady state conditions.
steady_state_tolerance1e-08Whenever the relative residual changes by less than this the solution will be considered to be at steady state.
Default:1e-08
C++ Type:double
Options:
Description:Whenever the relative residual changes by less than this the solution will be considered to be at steady state.

Steady State Detection Parameters

time_period_endsThe end times of time periods
C++ Type:std::vector
Options:
Description:The end times of time periods
time_period_startsThe start times of time periods
C++ Type:std::vector
Options:
Description:The start times of time periods
time_periodsThe names of periods
C++ Type:std::vector
Options:
Description:The names of periods

Time Periods Parameters

Input Files

test/tests/time_steppers/logconstant_dt/logconstant_dt.i
modules/combined/test/tests/solid_mechanics/pressure/sm/pressure_rz_test_sm.i
modules/richards/test/tests/dirac/bh08.i
test/tests/postprocessors/scalar_coupled_postprocessor/scalar_coupled_postprocessor_test.i
modules/porous_flow/test/tests/basic_advection/2phase.i
modules/combined/test/tests/contact_verification/patch_tests/brick_1/brick1_aug.i
modules/peridynamics/test/tests/failure_tests/2D_stress_failure_NOSPD.i
test/tests/auxkernels/time_derivative/time_derivative.i
modules/porous_flow/test/tests/jacobian/line_sink03.i
modules/xfem/test/tests/second_order_elements/sm/square_branch_tri6_2d.i
modules/porous_flow/test/tests/jacobian/pls02.i
test/tests/userobjects/layered_base_restartable/layered_base_restartable.i
modules/combined/test/tests/beam_eigenstrain_transfer/subapp_err_3.i
modules/phase_field/tutorials/spinodal_decomposition/s2_fasttest.i
modules/phase_field/test/tests/phase_field_kernels/SimpleSplitCHWRes.i
test/tests/dgkernels/ad_dg_convection/ad_dg_convection.i
modules/combined/test/tests/contact_verification/patch_tests/cyl_3/cyl3_template1_sm.i
modules/porous_flow/test/tests/dirackernels/pls01.i
modules/phase_field/test/tests/KKS_system/kks_example.i
modules/porous_flow/test/tests/gravity/grav02e.i
modules/peridynamics/test/tests/generalized_plane_strain/generalized_plane_strain_squares_OSPD.i
test/tests/outputs/output_if_base_contains/dt_from_master_subsub.i
modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/glued_kinematic_sm.i
modules/misc/test/tests/dynamic_loading/dynamic_load_multiapp/misc_master_bad.i
modules/richards/test/tests/sinks/s05.i
test/tests/transfers/multiapp_copy_transfer/linear_lagrange_from_sub/sub.i
test/tests/time_integrators/tvdrk2/1d-linear.i
modules/combined/test/tests/inelastic_strain/elas_plas/elas_plas_nl1.i
modules/combined/test/tests/gap_heat_transfer_htonly/sphere2DRZ.i
modules/combined/test/tests/beam_eigenstrain_transfer/subapp1_uo_transfer.i
modules/porous_flow/test/tests/actions/fullsat_brine.i
modules/combined/test/tests/gap_heat_transfer_htonly/gap_heat_transfer_htonly_test.i
modules/combined/test/tests/elastic_thermal_patch/elastic_thermal_patch.i
modules/combined/test/tests/contact_verification/patch_tests/plane_2/plane2_mu_0_2_pen_sm.i
test/tests/outputs/intervals/sync_times.i
modules/tensor_mechanics/test/tests/jacobian/cto16.i
test/tests/multiapps/multiple_position_files/multiple_position_files.i
modules/tensor_mechanics/test/tests/material_limit_time_step/elas_plas/nafems_nl1_lim.i
modules/contact/test/tests/bouncing-block-contact/frictionless-mortar-fb-lm-mortar-disp.i
modules/richards/test/tests/jacobian_2/jnQ2P.i
modules/combined/test/tests/contact_adaptivity/contact_initial_adaptivity.i
test/tests/transfers/multiapp_postprocessor_interpolation_transfer/master.i
modules/combined/test/tests/sliding_block/sliding/dirac/sm/frictionless_kinematic_sm.i
modules/combined/test/tests/contact_verification/patch_tests/brick_4/brick4_template2.i
modules/combined/test/tests/simple_contact/simple_contact_test2.i
modules/combined/test/tests/evolving_mass_density/shear_test_tensors.i
modules/phase_field/test/tests/Nucleation/auxkernel.i
modules/peridynamics/test/tests/simple_tests/2D_irregularD_variableH_BPD.i
test/tests/outputs/transferred_scalar_variable/transferred_scalar_variable.i
modules/tensor_mechanics/test/tests/ad_thermal_expansion_function/dilatation.i
modules/richards/test/tests/jacobian_2/jn05.i
modules/tensor_mechanics/test/tests/j_integral/j_integral_3d_as_2d.i
modules/contact/test/tests/bouncing-block-contact/bouncing-block-ranfs.i
test/tests/time_integrators/actually_explicit_euler/actually_explicit_euler_lump_preconditioned.i
test/tests/postprocessors/element_variable_value/elemental_variable_value.i
modules/combined/test/tests/sliding_block/sliding/constraint/sm/frictional_02_penalty_sm.i
modules/tensor_mechanics/test/tests/jacobian/cwpc01.i
modules/phase_field/test/tests/PolynomialFreeEnergy/direct_order4_test.i
modules/tensor_mechanics/test/tests/weak_plane_tensile/small_deform_hard3.i
test/tests/multiapps/multilevel/time_dt_from_master_master.i
modules/porous_flow/test/tests/sinks/s02.i
modules/porous_flow/test/tests/energy_conservation/except01.i
modules/tensor_mechanics/test/tests/cp_slip_rate_integ/crysp_substep.i
modules/tensor_mechanics/test/tests/weak_plane_tensile/small_deform_hard2.i
modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_2phasePSVG.i
modules/porous_flow/test/tests/gravity/grav02f.i
modules/solid_mechanics/test/tests/j_integral/j_integral_3d_topo_q_func.i
test/tests/multiapps/sub_cycling_failure/master.i
modules/porous_flow/test/tests/flux_limited_TVD_pflow/pffltvd_1D.i
modules/porous_flow/test/tests/jacobian/heat_advection01.i
modules/chemical_reactions/test/tests/exceptions/missing_sto.i
test/tests/functions/function_setup/function_setup_test.i
test/tests/controls/time_periods/constraints/constraints.i
test/tests/misc/check_error/scalar_kernel_with_var.i
python/peacock/tests/common/lcf1.i
framework/contrib/hit/test/input.i
test/tests/outputs/console/multiapp/picard_master.i
modules/combined/examples/phase_field-mechanics/kks_mechanics_KHS.i
modules/richards/test/tests/gravity_head_2/gh_fu_05.i
modules/combined/test/tests/multiphase_mechanics/gradientcomponent.i
test/tests/multiapps/picard_multilevel/picard_master.i
modules/combined/test/tests/contact_verification/patch_tests/cyl_2/cyl2_template1_sm.i
test/tests/time_steppers/timesequence_stepper/timesequence_restart3.i
modules/peridynamics/test/tests/simple_tests/2D_regularD_variableH_OSPD.i
modules/tensor_mechanics/test/tests/smeared_cracking/cracking_plane_stress.i
modules/porous_flow/test/tests/poro_elasticity/pp_generation_unconfined_fully_saturated_volume.i
modules/tensor_mechanics/test/tests/2D_different_planes/gps_jacobian_testing_xy.i
modules/porous_flow/test/tests/poro_elasticity/vol_expansion.i
modules/tensor_mechanics/test/tests/beam/eigenstrain/thermal_expansion_small.i
test/tests/vectorpostprocessors/point_value_sampler_history/point_value_sampler_history.i
modules/tensor_mechanics/test/tests/jacobian/coss_elastic.i
modules/combined/test/tests/simple_contact/sm/merged_sm.i
modules/stochastic_tools/test/tests/multiapps/sampler_transient_multiapp/sub.i
modules/porous_flow/test/tests/numerical_diffusion/fltvd.i
test/tests/multiapps/relaxation/picard_relaxed_master.i
modules/combined/test/tests/mortar_tm/2drz/frictionless_second/finite_noaction.i
modules/combined/test/tests/contact_verification/patch_tests/ring_2/ring2_mu_0_2_pen.i
modules/phase_field/test/tests/MultiPhase/lagrangemult.i
modules/tensor_mechanics/test/tests/multi/two_surface01.i
test/tests/postprocessors/element_time_derivative/el_time_deriv_1d_test.i
modules/stochastic_tools/test/tests/transfers/sampler_transfer/errors/sub_wrong_control.i
test/tests/functions/image_function/image_mesh_3d.i
test/tests/multiapps/restart_multilevel/subsub.i
test/tests/transfers/multiapp_postprocessor_to_scalar/master2_wrong_positions.i
modules/phase_field/test/tests/initial_conditions/RndBoundingBoxIC.i
modules/porous_flow/test/tests/jacobian/hcs02.i
modules/porous_flow/test/tests/jacobian/denergy01.i
examples/ex06_transient/ex06.i
modules/tensor_mechanics/test/tests/dynamics/wave_1D/wave_rayleigh_hht.i
modules/phase_field/test/tests/phase_field_kernels/ADSplitCahnHilliard.i
test/tests/materials/stateful_prop/stateful_prop_adaptivity_test.i
test/tests/transfers/multiapp_nearest_node_transfer/tosub_displaced_master.i
test/tests/geomsearch/3d_moving_penetration/pl_test1.i
test/tests/postprocessors/nodal_extreme_value/nodal_max_pps_test.i
modules/xfem/test/tests/pressure_bc/edge_3d_pressure.i
modules/porous_flow/test/tests/chemistry/except3.i
modules/combined/test/tests/hertz_contact/hertz_contact_rz.i
modules/combined/test/tests/sliding_block/in_and_out/constraint/sm/frictional_04_penalty_sm.i
modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform17.i
modules/combined/test/tests/solid_mechanics/beam_pbp/beam_pbp.i
test/tests/controls/error/multiple_parameters_found.i
test/tests/test_harness/good.i
test/tests/time_integrators/explicit-euler/ee-1d-linear.i
modules/combined/test/tests/contact_verification/overclosure_removal/overclosure.i
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modules/xfem/test/tests/single_var_constraint_2d/propagating_2field_1constraint.i
modules/solid_mechanics/test/tests/combined_creep_plasticity/combined_creep_plasticity_sm1.i
modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform2.i
modules/combined/test/tests/solid_mechanics/LinearStrainHardening/sm/LinearStrainHardeningRestart2_sm.i
modules/tensor_mechanics/test/tests/mean_cap_TC/small_deform1.i
modules/tensor_mechanics/test/tests/thermal_expansion/ad_constant_expansion_coeff.i
modules/tensor_mechanics/test/tests/tensile/small_deform1_update_version.i
modules/xfem/test/tests/single_var_constraint_2d/stationary_equal.i
tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/problems/step6a_coupled.i
modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform7.i
modules/tensor_mechanics/test/tests/jacobian/mc_update33_cosserat.i
modules/combined/test/tests/CHSplitFlux/simple_transient_diffusion_flux.i
test/tests/transfers/multiapp_scalar_to_auxscalar_transfer/from_sub/master.i
modules/phase_field/test/tests/KKS_system/kks_xevac.i
test/tests/mesh/named_entities/periodic_bc_names_test.i
test/tests/functions/hardcoded_piecewise_linear/hardcoded_piecewise_linear.i
test/tests/multiapps/reset/master.i
test/tests/kernels/ad_vector_couple/ad_vector_couple.i
modules/richards/test/tests/gravity_head_2/ghQ2P_pgas.i
modules/tensor_mechanics/test/tests/weak_plane_shear/small_deform_harden4.i
modules/stochastic_tools/test/tests/multiapps/sampler_full_solve_multiapp/sub.i
modules/functional_expansion_tools/examples/3D_volumetric_cylindrical/main.i
test/tests/time_integrators/actually_explicit_euler_verification/ee-1d-linear.i
test/tests/time_steppers/constant_dt/constant_dt.i
modules/combined/test/tests/sliding_block/in_and_out/constraint/frictional_lm.i
modules/combined/test/tests/cavity_pressure/3d.i
modules/stochastic_tools/test/tests/transfers/sampler_transfer_vector/master.i
modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform18.i
modules/xfem/test/tests/solid_mechanics_basic/sm/square_branch_tri_2d.i
test/tests/multiapps/transient_multiapp/dt_from_multi_sub.i
test/tests/materials/stateful_prop/many_stateful_props.i
modules/tensor_mechanics/test/tests/2D_geometries/2D-RZ_finiteStrain_test.i
test/tests/meshgenerators/subdomain_bounding_box_generator/subdomain_bounding_box_generator_outside.i
modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform6.i
modules/tensor_mechanics/test/tests/finite_strain_elastic/finite_strain_elastic_eigen_sol.i
modules/combined/test/tests/DiffuseCreep/stress.i
modules/porous_flow/test/tests/jacobian/basic_advection1.i
test/tests/nodalkernels/constraint_enforcement/vi-bounding.i
modules/combined/test/tests/elastic_thermal_patch/elastic_thermal_weak_plane_stress_jacobian.i
test/tests/functions/piecewise_constant/piecewise_constant.i
modules/tensor_mechanics/test/tests/smeared_cracking/cracking_exponential_deprecated.i
modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/frictionless_kinematic_sm.i
modules/tensor_mechanics/test/tests/generalized_plane_strain/plane_strain.i
test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test3nstt.i
modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_added_mass_inertia_damping.i
modules/tensor_mechanics/test/tests/jacobian/cosserat03.i
modules/tensor_mechanics/test/tests/notched_plastic_block/biaxial_abbo.i
modules/richards/test/tests/jacobian_1/jn11.i
modules/phase_field/test/tests/SimpleACInterface/SimpleACInterface.i
modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_2phasePSVG2.i
test/tests/postprocessors/displaced_mesh/elemental.i
modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform5.i
test/tests/geomsearch/3d_moving_penetration/pl_test3tt.i
modules/combined/test/tests/power_law_creep/power_law_creep_sm.i
modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/glued_kinematic.i
test/tests/time_steppers/cutback_factor_at_failure/function_dt_cutback.i
modules/porous_flow/examples/tutorial/07.i
modules/tensor_mechanics/test/tests/j_integral/j_integral_3d_topo_q_func.i
test/tests/outputs/system_info/system_info.i
modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/glued_penalty_sm.i
test/tests/geomsearch/2d_moving_penetration/pl_test2.i
examples/ex20_user_objects/ex20.i
test/tests/postprocessors/mms_sine/3_d_mms_sine_test.i
test/tests/functions/piecewise_multilinear/time.i
test/tests/restart/new_dt/new_dt.i
test/tests/outputs/overwrite/overwrite.i
test/tests/mesh/custom_partitioner/custom_linear_partitioner_test_displacement.i
modules/tensor_mechanics/test/tests/t_stress/t_stress_ellip_crack_3d.i
modules/tensor_mechanics/test/tests/j_integral/j_integral_2d_small_strain.i
modules/richards/test/tests/dirac/bh02.i
modules/tensor_mechanics/test/tests/jacobian/inertial_torque.i
modules/combined/test/tests/hertz_contact/hertz_contact_rz_quad8.i
modules/combined/test/tests/cavity_pressure/multiple_postprocessors.i
modules/tensor_mechanics/test/tests/static_deformations/beam_cosserat_02_apply_stress.i
test/tests/kernels/ad_mat_diffusion/1D_transient.i
modules/combined/examples/phase_field-mechanics/Nonconserved.i
modules/tensor_mechanics/test/tests/multi/three_surface20.i
python/peacock/tests/common/time_data.i
modules/combined/test/tests/beam_eigenstrain_transfer/master_uo_transfer.i
modules/phase_field/test/tests/phase_field_crystal/PFCRFF_split/PFCRFF_split_test_sub.i
modules/tensor_mechanics/test/tests/capped_mohr_coulomb/random5.i
modules/porous_flow/test/tests/fluidstate/theis_nonisothermal.i
test/tests/test_harness/long_running.i
tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7b_fine.i
modules/heat_conduction/test/tests/heat_conduction/3d_quadrature_gap_heat_transfer/moving.i
modules/porous_flow/examples/lava_lamp/2phase_convection.i
modules/tensor_mechanics/test/tests/visco/visco_small_strain.i
modules/phase_field/test/tests/rigidbodymotion/grain_motion.i
modules/combined/test/tests/phase_field_fracture/crack2d_computeCrackedStress_finitestrain_plastic.i
modules/combined/test/tests/ad_power_law_creep/power_law_creep_restart2.i
test/tests/outputs/vtk/vtk_diff.i
modules/porous_flow/test/tests/jacobian/eff_stress03.i
test/tests/functions/coarsened_piecewise_linear/coarsened_piecewise_linear.i
modules/tensor_mechanics/test/tests/radial_disp_aux/sphere_3d_cartesian.i
modules/tensor_mechanics/test/tests/weak_plane_shear/small_deform_harden2.i
test/tests/time_steppers/zero_dt/test.i
test/tests/materials/output/block_via_outputs.i
test/tests/geomsearch/3d_moving_penetration/pl_test2q.i
modules/phase_field/test/tests/Nucleation/parallel.i
modules/porous_flow/test/tests/chemistry/except8.i
modules/porous_flow/test/tests/jacobian/chem07.i
modules/xfem/test/tests/single_var_constraint_3d/stationary_jump_fluxjump_3d.i
modules/phase_field/test/tests/initial_conditions/SmoothSuperellipsoidIC_3D.i
modules/tensor_mechanics/test/tests/capped_drucker_prager/small_deform3_inner_tip.i
modules/combined/test/tests/gravity/gravity_qp_select.i
modules/tensor_mechanics/test/tests/jacobian/cto19.i
test/tests/bcs/periodic/auto_periodic_bc_test_3d.i
modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform2.i
modules/porous_flow/test/tests/chemistry/dissolution_limited_2phase.i
modules/chemical_reactions/test/tests/solid_kinetics/2species.i
modules/tensor_mechanics/test/tests/jacobian/cto24.i
modules/solid_mechanics/test/tests/domain_integral_thermal/j_integral_2d_mean_ctefunc.i
modules/tensor_mechanics/test/tests/static_deformations/cosserat_shear.i
modules/phase_field/test/tests/Nucleation/material.i
modules/combined/test/tests/contact_verification/patch_tests/plane_4/plane4_mu_0_2_pen_sm.i
test/tests/mesh_modifiers/block_deleter/BlockDeleterTest1.i
modules/peridynamics/test/tests/plane_stress/conventional_planestress_OSPD.i
modules/porous_flow/test/tests/poro_elasticity/terzaghi.i
modules/combined/test/tests/gap_heat_transfer_htonly/gap_heat_transfer_htonly_rz_test.i
modules/phase_field/test/tests/phase_field_crystal/PFCTrad/pfct_newton_split1_asm5.i
modules/tensor_mechanics/test/tests/notched_plastic_block/biaxial_planar.i
test/tests/auxkernels/vector_function_aux/vector_function_aux.i
test/tests/materials/boundary_material/elem_aux_bc_on_bnd.i
modules/tensor_mechanics/test/tests/weak_plane_tensile/small_deform1.i
test/tests/auxkernels/flux_average/flux_average.i
test/tests/auxkernels/solution_aux/solution_aux_exodus_interp_restart2.i
test/tests/multiapps/multilevel/time_dt_from_master_subsub.i
modules/xfem/test/tests/diffusion_xfem/levelsetcut2d.i
modules/tensor_mechanics/test/tests/capped_weak_plane/push_and_shear.i
test/tests/multiapps/picard/picard_abs_tol_master.i
modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small.i
modules/functional_expansion_tools/examples/3D_volumetric_Cartesian_different_submesh/main.i
test/tests/time_integrators/rk-2/1d-linear.i
test/tests/transfers/multiapp_mesh_function_transfer/tosub_sub.i
modules/richards/test/tests/jacobian_2/jn06.i
modules/combined/test/tests/internal_volume/hex20.i
modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-min-lm-nodal-disp.i
modules/tensor_mechanics/test/tests/stickyBC/push_up.i
modules/tensor_mechanics/test/tests/jacobian/tensile_update7.i
modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/frictionless_penalty_sm.i
test/tests/transfers/transfer_with_reset/master.i
modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform15.i
modules/phase_field/examples/grain_growth/grain_growth_2D_random.i
modules/xfem/test/tests/single_var_constraint_3d/stationary_equal_3d.i
modules/solid_mechanics/examples/bridge/bridge_large_strain.i
test/tests/test_harness/exception_transient.i
test/tests/transfers/multiapp_variable_value_sample_transfer/pp_sub.i
modules/phase_field/test/tests/TotalFreeEnergy/TotalFreeEnergy_test.i
modules/tensor_mechanics/test/tests/jacobian/cto04.i
test/tests/transfers/multiapp_copy_transfer/third_monomial_from_sub/master.i
test/tests/time_integrators/dirk/dirk-2d-heat.i
modules/tensor_mechanics/test/tests/2D_different_planes/gps_yz.i
modules/tensor_mechanics/test/tests/drucker_prager/small_deform3_native.i
modules/combined/test/tests/axisymmetric_2d3d_solution_function/2d.i
modules/combined/test/tests/contact_verification/patch_tests/ring_4/ring4_template1_sm.i
modules/combined/test/tests/elastic_patch/elastic_patch_plane_strain_large_strain_sm.i
modules/tensor_mechanics/test/tests/truss/truss_2d.i
modules/phase_field/test/tests/MultiSmoothCircleIC/multismoothcircleIC_normal_test.i
modules/solid_mechanics/test/tests/check_error/youngs_modulus_sm.i
modules/combined/test/tests/sliding_block/sliding/constraint/sm/frictionless_penalty_sm.i
modules/tensor_mechanics/test/tests/thermal_expansion/multiple_thermal_eigenstrains.i
modules/heat_conduction/test/tests/gray_lambert_radiator/gray_lambert_cavity_automatic_vf.i
modules/combined/test/tests/gap_heat_transfer_htonly/cyl2D.i
modules/phase_field/examples/anisotropic_interfaces/GrandPotentialPlanarGrowth.i
modules/stochastic_tools/test/tests/multiapps/batch_sampler_transient_multiapp/master_transient.i
test/tests/functions/image_function/crop.i
modules/porous_flow/test/tests/flux_limited_TVD_advection/except_01.i
test/tests/kernels/conservative_advection/no_upwinding_jacobian.i
modules/tensor_mechanics/test/tests/2D_different_planes/planestrain_jacobian_testing_xz.i
modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialAnisotropyAntitrap.i
modules/porous_flow/test/tests/numerical_diffusion/pffltvd_action.i
modules/contact/test/tests/bouncing-block-contact/frictional-mortar-min-lm-mortar-disp.i
modules/stochastic_tools/test/tests/vectorpostprocessors/multiple_stochastic_results/sub.i
modules/tensor_mechanics/test/tests/mohr_coulomb/random_planar.i

test/tests/time_steppers/logconstant_dt/logconstant_dt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 11
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  # Pluggable TimeStepper System
  [./TimeStepper]
    type = LogConstantDT
    log_dt = 0.2
    first_dt = 0.1
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/pressure/sm/pressure_rz_test_sm.i

#
# Pressure Test
#
# This test is taken from the Abaqus verification manual:
#   "1.3.4 Axisymmetric solid elements"
#
# The two lower nodes are not allowed to translate in the z direction.
# Step 1:
#   Pressure of 1000 is applied on each face.
# Step 2:
#   Step 1 load plus a pressure on the vertical faces that varies from
#   0 to 1000 from top to bottom.
#
# Solution:
# Step 1:
#    Stress xx, yy, zz = -1000
#    Stress xy = 0
# Step 2:
#    Stress xx, zz = -1500
#    Stress yy = -1000
#    Stress xy = 0

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  volumetric_locking_correction = false
[]

[Problem]
  coord_type = RZ
[]

[Mesh]#Comment
  file = pressure_rz_test.e
[] # Mesh

[Functions]
  [./constant]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1e3
  [../]
  [./vary]
    type = ParsedFunction
    value = 'if(t <= 1, 1000 , 1000+1000*(1-y))'
  [../]
[] # Functions

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

[] # Variables

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]

[] # AuxVariables

[SolidMechanics]

  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    use_displaced_mesh = false
  [../]

[] # SolidMechanics

[AuxKernels]

  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
#  [./stress_xy]
#    type = MaterialTensorAux
#    tensor = stress
#    variable = stress_xy
#    index = 3
#  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]

[] # AuxKernels

[BCs]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./Pressure]
    [./Pressure1]
      boundary = '3 4'
      function = constant
    [../]
    [./Pressure2]
      boundary = '1 2'
      function = vary
    [../]
  [../]

[] # BCs

[Materials]

  [./stiffStuff]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.0
    thermal_expansion = 1e-5
  [../]

[] # Materials

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'




  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-12

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[] # Executioner

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

modules/richards/test/tests/dirac/bh08.i

# fully-saturated
# production
# with anisotropic, but diagonal, permeability
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = 1
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E7
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-12 0 0  0 2E-12 0  0 0 1E-12'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON

[]

[Outputs]
  file_base = bh08
  exodus = false
  csv = true
  execute_on = timestep_end
[]

test/tests/postprocessors/scalar_coupled_postprocessor/scalar_coupled_postprocessor_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmax = 1
  ymax = 1
  elem_type = QUAD4
[]

[Variables]
  [./u]
    initial_condition = 1
  [../]
  [./scalar_variable]
    family = SCALAR
    order = FIRST
    initial_condition = 2
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[ScalarKernels]
  [./td1]
    type = ODETimeDerivative
    variable = scalar_variable
  [../]
[]

[BCs]
  [./leftDirichlet]
      type = DirichletBC
      variable = u
      boundary = 'left'
      value = 1
  [../]
  [./rightDirichlet]
      type = DirichletBC
      variable = u
      boundary = 'right'
      value = 0
  [../]
[]

[Postprocessors]
  [./totalFlux]
    type = ScalarCoupledPostprocessor
    variable = u
    coupled_scalar = scalar_variable
    boundary = left
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 1
  solve_type = JFNK
  l_max_its = 30
  l_tol = 1e-6
  nl_max_its = 20
  nl_rel_tol = 1e-5
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/basic_advection/2phase.i

# Basic advection of u in a 2-phase situation
#
# grad(P) = -2
# density * gravity = 4 * 0.25
# grad(P) - density * gravity = -3
# permeability = 10
# relative permeability = 0.5
# viscosity = 150
# so Darcy velocity = 0.1
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./P0]
  [../]
  [./P1]
  [../]
[]

[ICs]
  [./P0]
    type = FunctionIC
    variable = P0
    function = '0'
  [../]
  [./P1]
    type = FunctionIC
    variable = P1
    function = '2*(1-x)'
  [../]
  [./u]
    type = FunctionIC
    variable = u
    function = 'if(x<0.1,1,0)'
  [../]
[]

[Kernels]
  [./u_dot]
    type = TimeDerivative
    variable = u
  [../]
  [./u_advection]
    type = PorousFlowBasicAdvection
    variable = u
    phase = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = ''
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      density0 = 32
      viscosity = 123
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 4
      thermal_expansion = 0
      viscosity = 150.0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = P0
    phase1_porepressure = P1
    capillary_pressure = pc
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '10 0 0 0 10 0 0 0 10'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityConst
    kr = 0.5
    phase = 1
  [../]
  [./darcy_velocity]
    type = PorousFlowDarcyVelocityMaterial
    gravity = '0.25 0 0'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 1
    variable = u
  [../]
  [./right]
    type = DirichletBC
    boundary = right
    value = 0
    variable = u
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -snes_rtol'
    petsc_options_value = ' lu       1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 5
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_1/brick1_aug.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick1_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 100
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_x
  [../]
  [./disp_x13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_y
  [../]
  [./disp_y13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_x8 disp_x13 disp_x16 disp_y5 disp_y8 disp_y13 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    tangential_tolerance = 1e-3
    formulation = augmented_lagrange
    system = constraint
    normalize_penalty = true
    penalty = 1e8
    model = frictionless
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/peridynamics/test/tests/failure_tests/2D_stress_failure_NOSPD.i


[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3
  cracks_start = '0.25 0.5 0'
  cracks_end = '0.75 0.5 0'

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 8
    ny = 8
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./damage]
  [../]
  [./intact_bonds_num]
  [../]
  [./critical_stress]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./bond_status]
    type = RankTwoBasedFailureCriteriaNOSPD
    variable = bond_status
    rank_two_tensor = stress
    critical_variable = critical_stress
    failure_criterion = VonMisesStress
  [../]
[]

[UserObjects]
  [./damage]
    type = NodalDamageIndexPD
    variable = damage
  [../]
  [./intact_bonds]
    type = NodalNumIntactBondsPD
    variable = intact_bonds_num
  [../]
[]

[ICs]
  [./critical_stretch]
    type = ConstantIC
    variable = critical_stress
    value = 150
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1002
    value = 0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1000
    function = '-0.001*t'
  [../]

  [./rbm_x]
    type = RBMPresetOldValuePD
    variable = disp_x
    boundary = 999
  [../]
  [./rbm_y]
    type = RBMPresetOldValuePD
    variable = disp_y
    boundary = 999
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.33
  [../]
  [./strain]
    type = ComputeSmallStrainNOSPD
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  dt = 0.5
  end_time = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

[Outputs]
  file_base = 2D_stress_failure_NOSPD
  exodus = true
[]

test/tests/auxkernels/time_derivative/time_derivative.i

# This test is setting the values of an auxiliary varaible f according to the
# function f_fn. This function is time dependent.
#
# Then the f_dot is brought as a forcing function into the L2 projection, thus
# the resulting values of u should give the f_dot which is known.
#
# NOTE: There is no need to do more than 2 time steps, because f_dot is constant
# in time. That means that the projection is exactly the same for the second time
# step as is for the first time step. The solver has nothing to do and you can
# see that on the "zero" initial non-linear residual.
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
[]

[Functions]
  [./f_fn]
    type = ParsedFunction
    value = t*(x+y)
  [../]
  [./f_dot_fn]
    type = ParsedFunction
    value = (x+y)
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./l2_proj]
    type = Reaction
    variable = u
  [../]
  [./dck]
    type = DotCouplingKernel
    variable = u
    v = f
  [../]
[]

[AuxVariables]
  [./f]
  [../]
[]

[AuxKernels]
  [./f_k]
    type = FunctionAux
    variable = f
    function = f_fn
  [../]
[]

[Postprocessors]
  [./l2_error]
    type = ElementL2Error
    variable = u
    function = f_dot_fn
  [../]
[]

[Executioner]
  type = Transient

  dt = 0.1
  num_steps = 2

  nl_abs_tol = 1.e-15
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/line_sink03.i

# PorousFlowPeacemanBorehole with 2-phase, 3-components, with enthalpy, internal_energy, and thermal_conductivity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph0_sp1]
  [../]
  [./massfrac_ph1_sp0]
  [../]
  [./massfrac_ph1_sp1]
  [../]
  [./temp]
  [../]
[]


[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp ppwater ppgas massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
  [./dummy_outflow0]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow1]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow2]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow3]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow4]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow5]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow6]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow7]
    type = PorousFlowSumQuantity
  [../]
[]

[ICs]
  [./temp]
    type = RandomIC
    variable = temp
    min = 1
    max = 2
  [../]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp1]
    type = RandomIC
    variable = massfrac_ph0_sp1
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp1]
    type = RandomIC
    variable = massfrac_ph1_sp1
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./dummy_temp]
    type = TimeDerivative
    variable = temp
  [../]
  [./dummy_ppwater]
    type = TimeDerivative
    variable = ppwater
  [../]
  [./dummy_ppgas]
    type = TimeDerivative
    variable = ppgas
  [../]
  [./dummy_m00]
    type = TimeDerivative
    variable = massfrac_ph0_sp0
  [../]
  [./dummy_m01]
    type = TimeDerivative
    variable = massfrac_ph0_sp1
  [../]
  [./dummy_m10]
    type = TimeDerivative
    variable = massfrac_ph1_sp0
  [../]
  [./dummy_m11]
    type = TimeDerivative
    variable = massfrac_ph1_sp1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
      cv = 1.1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1.4
      cv = 1.8
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '0.1 0.02 0.03 0.02 0.0 0.01 0.03 0.01 0.3'
  [../]
[]

[DiracKernels]
  #active = 'dirac6 dirac2' # incorrect jacobian for ny=2
  #active = 'dirac0 dirac1 dirac2 dirac3 dirac4 dirac5' # correct jacobian for ny=2
  #active = 'dirac0 dirac1 dirac2 dirac3 dirac4 dirac5 dirac6' # incorrect jacobian for ny=2
  #active = 'dirac0 dirac1 dirac2 dirac3 dirac4 dirac5 dirac7' # correct jacobian in dbg, but not in opt, for ny=2
  #active = 'dirac0 dirac1 dirac2 dirac3 dirac4 dirac5 dirac6' # incorrect jacobian in dbg, but correct for opt, for ny=1
  #active = 'dirac0 dirac1 dirac2 dirac3 dirac4 dirac5' # correct jacobian, for ny=1
  #active = 'dirac0 dirac1 dirac2 dirac3 dirac4 dirac5 dirac6' # incorrect jacobian in dbg, but correct for opt, for ny=1.  row24, col 21 and 22 are wrong.  row24=node3, 21=ppwater, 22=ppgas, 24=massfrac_ph0_sp1 (all at node3)
  [./dirac0]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 0
    variable = ppwater
    point_file = one_point.bh
    line_length = 1
    SumQuantityUO = dummy_outflow0
    character = 1
    bottom_p_or_t = -10
    unit_weight = '1 2 3'
    re_constant = 0.123
  [../]
  [./dirac1]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 1
    variable = ppgas
    line_length = 1
    line_direction = '-1 -1 -1'
    use_relative_permeability = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow1
    character = -0.5
    bottom_p_or_t = 10
    unit_weight = '1 2 -3'
    re_constant = 0.3
  [../]
  [./dirac2]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 0
    variable = massfrac_ph0_sp0
    line_length = 1.3
    line_direction = '1 0 1'
    use_mobility = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow2
    character = 0.6
    bottom_p_or_t = -4
    unit_weight = '-1 -2 -3'
    re_constant = 0.4
  [../]
  [./dirac3]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 0
    variable = massfrac_ph0_sp1
    line_length = 1.3
    line_direction = '1 1 1'
    use_enthalpy = true
    mass_fraction_component = 0
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow3
    character = -1
    bottom_p_or_t = 3
    unit_weight = '0.1 0.2 0.3'
    re_constant = 0.5
  [../]
  [./dirac4]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 1
    variable = massfrac_ph1_sp0
    function_of = temperature
    line_length = 0.9
    line_direction = '1 1 1'
    mass_fraction_component = 1
    use_internal_energy = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow4
    character = 1.1
    bottom_p_or_t = -7
    unit_weight = '-1 2 3'
    re_constant = 0.6
  [../]
  [./dirac5]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 1
    variable = temp
    line_length = 0.9
    function_of = temperature
    line_direction = '1 2 3'
    mass_fraction_component = 2
    use_internal_energy = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow5
    character = 0.9
    bottom_p_or_t = -8
    unit_weight = '1 2 1'
    re_constant = 0.7
  [../]
  [./dirac6]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 0
    variable = ppwater
    point_file = nine_points.bh
    SumQuantityUO = dummy_outflow6
    character = 0
    bottom_p_or_t = 10
    unit_weight = '0.0 0.0 0.0'
  [../]
  [./dirac7]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 1
    variable = massfrac_ph0_sp0
    use_mobility = true
    mass_fraction_component = 1
    use_relative_permeability = true
    use_internal_energy = true
    point_file = ten_points.bh
    SumQuantityUO = dummy_outflow7
    character = -1
    bottom_p_or_t = 10
    unit_weight = '0.1 0.2 0.3'
  [../]
[]


[Preconditioning]
  [./check]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  file_base = line_sink03
[]

modules/xfem/test/tests/second_order_elements/sm/square_branch_tri6_2d.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
  volumetric_locking_correction = false
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = TRI6
  displacements = 'disp_x disp_y'
[]

[UserObjects]
  [./line_seg_cut_set_uo]
    type = LineSegmentCutSetUserObject
    cut_data = '-1.0000e-10   6.6340e-01   6.6340e-01  -1.0000e-10  0.0  1.0
                 3.3120e-01   3.3200e-01   1.0001e+00   3.3200e-01  1.0  2.0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./right_disp_x]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
  [./top_disp_y]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionDirichletBC
    boundary = 1
    variable = disp_x
    function = right_disp_x
  [../]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = top_disp_y
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.2
  num_steps = 5000
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/jacobian/pls02.i

# PorousFlowPiecewiseLinearSink with 2-phase, 2-components
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 3
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]


[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas massfrac_ph0_sp0 massfrac_ph1_sp0'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./dummy_ppwater]
    type = TimeDerivative
    variable = ppwater
  [../]
  [./dummy_ppgas]
    type = TimeDerivative
    variable = ppgas
  [../]
  [./dummy_m00]
    type = TimeDerivative
    variable = massfrac_ph0_sp0
  [../]
  [./dummy_m10]
    type = TimeDerivative
    variable = massfrac_ph1_sp0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1.4
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
[]

[BCs]
  [./flux_w]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'left'
    pt_vals = '-1 -0.5 0'
    multipliers = '1 2 4'
    variable = ppwater
    mass_fraction_component = 0
    fluid_phase = 0
    use_relperm = true
    use_mobility = true
    flux_function = 'x*y'
  [../]
  [./flux_g]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'top'
    pt_vals = '0 0.5 1'
    multipliers = '1 -2 4'
    mass_fraction_component = 0
    variable = ppgas
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '-x*y'
  [../]
  [./flux_1]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'right'
    pt_vals = '0 0.5 1'
    multipliers = '1 3 4'
    mass_fraction_component = 1
    variable = massfrac_ph0_sp0
    fluid_phase = 0
    use_relperm = true
    use_mobility = true
  [../]
  [./flux_2]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'back top'
    pt_vals = '0 0.5 1'
    multipliers = '0 1 -3'
    mass_fraction_component = 1
    variable = massfrac_ph1_sp0
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '0.5*x*y'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 2
[]

[Outputs]
  file_base = pls02
[]

test/tests/userobjects/layered_base_restartable/layered_base_restartable.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 5
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./np_layered_average]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./np_layered_average]
    type = SpatialUserObjectAux
    variable = np_layered_average
    execute_on = 'timestep_begin'
    user_object = npla
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 10
  [../]
  [./one]
    type = DirichletBC
    variable = u
    boundary = 'right back top'
    value = 12
  [../]
[]

[UserObjects]
  [./npla]
    type = NearestPointLayeredAverage
    direction = y
    points = '0.25 0 0.25 0.75 0 0.25 0.25 0 0.75 0.75 0 0.75'
    num_layers = 10
    variable = u
    execute_on = 'timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 8
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/beam_eigenstrain_transfer/subapp_err_3.i

# SubApp with 2D model to test multi app vectorpostprocessor to aux var transfer

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 5
  xmin = 0.0
  xmax = 0.5
  ymin = 0.0
  ymax = 0.150080
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./temp]
  [../]
  [./axial_strain]
    order = FIRST
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t*(500.0)+300.0
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = SMALL
        incremental = true
        add_variables = true
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
  [../]
  [./axial_strain]
    type = RankTwoAux
    variable = axial_strain
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 298
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-9

  start_time = 0.0
  end_time = 0.075
  dt = 0.0125
  dtmin = 0.0001
[]

[Outputs]
  csv = true
  exodus = true
[]

[VectorPostprocessors]
  [./axial_str]
    type = LineValueSampler
    start_point = '0.5 0.0 0.0'
    end_point = '0.5 0.150080 0.0'
    variable = axial_strain
    num_points = 21
    sort_by = 'y'
  [../]
[]

[Postprocessors]
  [./end_disp]
    type = PointValue
    variable = disp_y
    point = '0.5 0.150080 0.0'
  [../]
[]

modules/phase_field/tutorials/spinodal_decomposition/s2_fasttest.i

#
# Simulation of an iron-chromium alloy using simple code and a test set of
# initial conditions.
#

[Mesh]
  # generate a 2D, 25nm x 25nm mesh
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  nx = 100
  ny = 100
  nz = 0
  xmin = 0
  xmax = 25
  ymin = 0
  ymax = 25
  zmin = 0
  zmax = 0
[]

[Variables]
  [./c]   # Mole fraction of Cr (unitless)
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]   # Chemical potential (eV/mol)
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  # Use a bounding box IC at equilibrium concentrations to make sure the
  # model behaves as expected.
  [./testIC]
    type = BoundingBoxIC
    variable = c
    x1 = 5
    x2 = 20
    y1 = 5
    y2 = 20
    inside = 0.823
    outside = 0.236
  [../]
[]

[BCs]
  # periodic BC as is usually done on phase-field models
  [./Periodic]
    [./c_bcs]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Kernels]
  # See wiki page "Developing Phase Field Models" for more information on Split
  # Cahn-Hilliard equation kernels.
  # http://mooseframework.org/wiki/PhysicsModules/PhaseField/DevelopingModels/
  [./w_dot]
    variable = w
    v = c
    type = CoupledTimeDerivative
  [../]
  [./coupled_res]
    variable = w
    type = SplitCHWRes
    mob_name = M
  [../]
  [./coupled_parsed]
    variable = c
    type = SplitCHParsed
    f_name = f_loc
    kappa_name = kappa_c
    w = w
  [../]
[]

[Materials]
  # d is a scaling factor that makes it easier for the solution to converge
  # without changing the results. It is defined in each of the materials and
  # must have the same value in each one.
  [./constants]
    # Define constant values kappa_c and M. Eventually M will be replaced with
    # an equation rather than a constant.
    type = GenericFunctionMaterial
    prop_names = 'kappa_c M'
    prop_values = '8.125e-16*6.24150934e+18*1e+09^2*1e-27
                   2.2841e-26*1e+09^2/6.24150934e+18/1e-27'
                   # kappa_c*eV_J*nm_m^2*d
                   # M*nm_m^2/eV_J/d
  [../]
  [./local_energy]
    # Defines the function for the local free energy density as given in the
    # problem, then converts units and adds scaling factor.
    type = DerivativeParsedMaterial
    f_name = f_loc
    args = c
    constant_names = 'A   B   C   D   E   F   G  eV_J  d'
    constant_expressions = '-2.446831e+04 -2.827533e+04 4.167994e+03 7.052907e+03
                            1.208993e+04 2.568625e+03 -2.354293e+03
                            6.24150934e+18 1e-27'
    function = 'eV_J*d*(A*c+B*(1-c)+C*c*log(c)+D*(1-c)*log(1-c)+
                E*c*(1-c)+F*c*(1-c)*(2*c-1)+G*c*(1-c)*(2*c-1)^2)'
    derivative_order = 2
  [../]
[]

[Postprocessors]
  [./evaluations]           # Cumulative residual calculations for simulation
    type = NumResidualEvaluations
  [../]
  [./elapsed]
    type = PerfGraphData
    section_name = "Root"
    data_type = total
  [../]
[]

[Preconditioning]
  # Preconditioning is required for Newton's method. See wiki page "Solving
  # Phase Field Models" for more information.
  # http://mooseframework.org/wiki/PhysicsModules/PhaseField/SolvingModels/
  [./coupled]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  l_max_its = 30
  l_tol = 1e-6
  nl_max_its = 50
  nl_abs_tol = 1e-9
  end_time = 86400   # 1 day. We only need to run this long enough to verify
                     # the model is working properly.
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type
                         -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly
                         ilu          1'
  [./TimeStepper]
    # Turn on time stepping
    type = IterationAdaptiveDT
    dt = 10
    cutback_factor = 0.8
    growth_factor = 1.5
    optimal_iterations = 7
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
  console = true
  csv = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/phase_field/test/tests/phase_field_kernels/SimpleSplitCHWRes.i

#
# Test the split parsed function free enery Cahn-Hilliard Bulk kernel
# The free energy used here has the same functional form as the SplitCHPoly kernel
# If everything works, the output of this test should replicate the output
# of marmot/tests/chpoly_test/CHPoly_Cu_Split_test.i (exodiff match)
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  nz = 0
  xmin = 0
  xmax = 250
  ymin = 0
  ymax = 250
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 125.0
      y1 = 125.0
      radius = 60.0
      invalue = 1.0
      outvalue = 0.1
      int_width = 30.0
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = SimpleSplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1e-3 0.1'
  [../]

  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'c'
    constant_names       = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
    derivative_order = 2
  [../]
[]

[Preconditioning]
  # active = ' '
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = 'NEWTON'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 6

  dt = 10
[]

[Outputs]
  exodus = true
[]

test/tests/dgkernels/ad_dg_convection/ad_dg_convection.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmax = 20
[]

[Variables]
  [u]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[DGKernels]
  [convection]
    type = ADDGConvection
    variable = u
    velocity = '1 0 0'
  []
[]

[BCs]
  [left]
    type = PenaltyDirichletBC
    value = 1
    penalty = 1e6
    boundary = 'left'
    variable = u
  []
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  num_steps = 10
  dt = 1
  dtmin = 1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_3/cyl3_template1_sm.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[Mesh]
  file = cyl3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/porous_flow/test/tests/dirackernels/pls01.i

# fully-saturated situation with a poly-line sink at one
# of the nodes.  Because there is no fluid flow, the
# other nodes should not experience any change in
# porepressure.
# The poly-line sink has length=2 and weight=0.1, and
# extracts fluid at a constant rate of 1 kg.m^-1.s^-1.
# Therefore, in 1 second it will have extracted a total
# of 0.2 kg.
# The porosity is 0.1, and the elemental volume is 2,
# so the fluid mass at the node in question = 0.2 * density / 4,
# where the 4 is the number of nodes in the element.
# In this simulation density = dens0 * exp(P / bulk), with
# dens0 = 100, and bulk = 20 MPa.
# The initial porepressure P0 = 10 MPa, so the final (after
# 1 second of simulation) is
# P(t=1) = 0.950879 MPa
#
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 2
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pls_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e7
      density0 = 100
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[DiracKernels]
  [./pls]
    type = PorousFlowPolyLineSink
    fluid_phase = 0
    point_file = pls01_21.bh
    line_length = 2
    SumQuantityUO = pls_total_outflow_mass
    variable = pp
    p_or_t_vals = '0 1E7'
    fluxes = '1 1'
  [../]
[]

[Postprocessors]
  [./pls_report]
    type = PorousFlowPlotQuantity
    uo = pls_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p00]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
  [./p01]
    type = PointValue
    variable = pp
    point = '0 1 0'
    execute_on = timestep_end
  [../]
  [./p20]
    type = PointValue
    variable = pp
    point = '2 0 0'
    execute_on = timestep_end
  [../]
  [./p21]
    type = PointValue
    variable = pp
    point = '2 1 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 pls_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
  dt = 1
  solve_type = NEWTON
[]

[Outputs]
  file_base = pls01
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/phase_field/test/tests/KKS_system/kks_example.i

#
# KKS toy problem in the non-split form
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  nz = 0
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  # order parameter
  [./eta]
    order = THIRD
    family = HERMITE
  [../]

  # hydrogen concentration
  [./c]
    order = THIRD
    family = HERMITE
  [../]

  # hydrogen phase concentration (matrix)
  [./cm]
    order = THIRD
    family = HERMITE
    initial_condition = 0.0
  [../]
  # hydrogen phase concentration (delta phase)
  [./cd]
    order = THIRD
    family = HERMITE
    initial_condition = 0.0
  [../]
[]

[ICs]
  [./eta]
    variable = eta
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 0.2
    invalue = 0.2
    outvalue = 0.1
    int_width = 0.05
  [../]
  [./c]
    variable = c
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 0.2
    invalue = 0.6
    outvalue = 0.4
    int_width = 0.05
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = 'eta c cm cd'
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  # Free energy of the matrix
  [./fm]
    type = DerivativeParsedMaterial
    f_name = fm
    args = 'cm'
    function = '(0.1-cm)^2'
    outputs = oversampling
  [../]

  # Free energy of the delta phase
  [./fd]
    type = DerivativeParsedMaterial
    f_name = fd
    args = 'cd'
    function = '(0.9-cd)^2'
    outputs = oversampling
  [../]

  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
    outputs = oversampling
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
    outputs = oversampling
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'L   '
    prop_values = '0.7 '
  [../]
[]

[Kernels]
  # enforce c = (1-h(eta))*cm + h(eta)*cd
  [./PhaseConc]
    type = KKSPhaseConcentration
    ca       = cm
    variable = cd
    c        = c
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotVacancies]
    type = KKSPhaseChemicalPotential
    variable = cm
    cb       = cd
    fa_name  = fm
    fb_name  = fd
  [../]

  #
  # Cahn-Hilliard Equation
  #
  [./CHBulk]
    type = KKSCHBulk
    variable = c
    ca       = cm
    cb       = cd
    fa_name  = fm
    fb_name  = fd
    mob_name = 0.7
  [../]
  [./dcdt]
    type = TimeDerivative
    variable = c
  [../]

  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = fm
    fb_name  = fd
    args     = 'cm cd'
    w        = 0.4
  [../]
  [./ACBulkC]
    type = KKSACBulkC
    variable = eta
    ca       = cm
    cb       = cd
    fa_name  = fm
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = 0.4
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pctype -sub_pc_type -sub_pc_factor_shift_type'
  petsc_options_value = ' asm    lu          nonzero'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-4

  num_steps = 1

  dt = 0.01
  dtmin = 0.01
[]

[Preconditioning]
  [./mydebug]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  file_base = kks_example
  [./oversampling]
    type = Exodus
    refinements = 3
  [../]
[]

modules/porous_flow/test/tests/gravity/grav02e.i

# Checking that gravity head is established in the transient situation when 0<=saturation<=1 (note the less-than-or-equal-to).
# 2phase (PS), 2components, constant capillary pressure, constant fluid bulk-moduli for each phase, constant viscosity,
# constant permeability, Corey relative permeabilities with no residual saturation

[Mesh]
  type = GeneratedMesh
  dim = 2
  ny = 10
  ymax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 -10 0'
[]

[Variables]
  [./ppwater]
    initial_condition = 1.5e6
  [../]
  [./sgas]
    initial_condition = 0.3
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
  [./ppgas]
    family = MONOMIAL
    order = FIRST
  [../]
  [./swater]
    family = MONOMIAL
    order = FIRST
  [../]
  [./relpermwater]
    family = MONOMIAL
    order = FIRST
  [../]
  [./relpermgas]
    family = MONOMIAL
    order = FIRST
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = sgas
  [../]
[]

[AuxKernels]
  [./ppgas]
    type = PorousFlowPropertyAux
    property = pressure
    phase = 1
    variable = ppgas
  [../]
  [./swater]
    type = PorousFlowPropertyAux
    property = saturation
    phase = 0
    variable = swater
  [../]
  [./relpermwater]
    type = PorousFlowPropertyAux
    property = relperm
    phase = 0
    variable = relpermwater
  [../]
  [./relpermgas]
    type = PorousFlowPropertyAux
    property = relperm
    phase = 1
    variable = relpermgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 1e5
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      viscosity = 1e-3
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 10
      viscosity = 1e-5
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-11 0 0 0 1e-11 0  0 0 1e-11'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
  [../]
[]

[Postprocessors]
  [./mass_ph0]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./mass_ph1]
    type = PorousFlowFluidMass
    fluid_component = 1
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1e5
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1e4
  [../]
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = grav02e
  exodus = true
  perf_graph = true
  csv = false
[]

modules/peridynamics/test/tests/generalized_plane_strain/generalized_plane_strain_squares_OSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./fmg]
    type = FileMeshGenerator
    file = squares.e
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = fmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./scalar_strain_zz1]
    order = FIRST
    family = SCALAR
  [../]
  [./scalar_strain_zz2]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./stress_zz1]
    order = FIRST
    family = LAGRANGE
  [../]
  [./stress_zz2]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/Peridynamics/Mechanics]
  [./Master]
    [./block1]
      formulation = ORDINARY_STATE
      block = 1001
    [../]
    [./block2]
      formulation = ORDINARY_STATE
      block = 1002
    [../]
  [../]
  [./GeneralizedPlaneStrain]
    [./block1]
      formulation = ORDINARY_STATE
      scalar_out_of_plane_strain = scalar_strain_zz1
      out_of_plane_stress_variable = stress_zz1
      block = 1001
    [../]
    [./block2]
      formulation = ORDINARY_STATE
      scalar_out_of_plane_strain = scalar_strain_zz2
      out_of_plane_stress_variable = stress_zz2
      block = 1002
    [../]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]

  [./stress_zz1]
    type = NodalRankTwoPD
    variable = stress_zz1
    rank_two_tensor = stress
    scalar_out_of_plane_strain = scalar_strain_zz1

    poissons_ratio = 0.3
    youngs_modulus = 1e6
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5

    output_type = component
    index_i = 2
    index_j = 2
    block = 1001
  [../]

  [./stress_zz2]
    type = NodalRankTwoPD
    variable = stress_zz2
    scalar_out_of_plane_strain = scalar_strain_zz2

    poissons_ratio = 0.3
    youngs_modulus = 1e6
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5

    rank_two_tensor = stress
    output_type = component
    index_i = 2
    index_j = 2
    block = 1002
  [../]
[]

[Postprocessors]
  [./react_z1]
    type = NodalVariableIntegralPD
    variable = stress_zz1
    block = 1001
  [../]
  [./react_z2]
    type = NodalVariableIntegralPD
    variable = stress_zz2
    block = 1002
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottom1_x]
    type = DirichletBC
    boundary = 1001
    variable = disp_x
    value = 0.0
  [../]
  [./bottom1_y]
    type = DirichletBC
    boundary = 1001
    variable = disp_y
    value = 0.0
  [../]

  [./bottom2_x]
    type = DirichletBC
    boundary = 1002
    variable = disp_x
    value = 0.0
  [../]
  [./bottom2_y]
    type = DirichletBC
    boundary = 1002
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    block = '1001 1002'
  [../]

  [./force_density1]
    type = ComputeSmallStrainVariableHorizonMaterialOSPD
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    scalar_out_of_plane_strain = scalar_strain_zz1
    block = 1001
  [../]
  [./force_density2]
    type = ComputeSmallStrainVariableHorizonMaterialOSPD
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    scalar_out_of_plane_strain = scalar_strain_zz2
    block = 1002
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  l_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  file_base = generalized_plane_strain_squares_OSPD
[]

test/tests/outputs/output_if_base_contains/dt_from_master_subsub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  output_if_base_contains = 'sub1_sub1 sub0_sub1'
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/glued_kinematic_sm.i

[Mesh]
  file = blocks_2d_nogap.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.01
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e7
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    system = Constraint
    master = 2
    slave = 3
    model = glued
    penalty = 1e+6
  [../]
[]

modules/misc/test/tests/dynamic_loading/dynamic_load_multiapp/misc_master_bad.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    positions = '0 0 0  0.5 0.5 0  0.6 0.6 0  0.7 0.7 0'
    type = TransientMultiApp
    input_files = 'phase_field_slave.i'

    # Here we'll attempt to load a different module that's not compiled into this module
    app_type = InvalidApp

    # Here we set an input file specific relative library path instead of using MOOSE_LIBRARY_PATH
    library_path = '../../../../../phase_field/lib'
  [../]
[]

modules/richards/test/tests/sinks/s05.i

# checking the multiplying_fcn of RichardsPiecewiseLinearSinkFlux.
# This test is constructed so it should produce exactly the same answer as s02.i
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.5
    al = 1 # same deal with PETScs constant state
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 2
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((mi-lfout-rfout-mf)/2/(mi+mf))
    vars = 'mi mf lfout rfout'
    vals = 'mass_init mass_fin left_flux_out right_flux_out'
  [../]
[]

[Postprocessors]
  [./mass_init]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]
  [./mass_fin]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]
  [./left_flux_out]
    type = RichardsHalfGaussianSinkFlux
    boundary = left
    variable = pressure
    centre = 1
    max = 4
    multiplying_fcn = 0.5
    sd = 1
  [../]
  [./right_flux_out]
    type = RichardsHalfGaussianSinkFlux
    boundary = right
    variable = pressure
    centre = 1
    max = 1
    multiplying_fcn = 2
    sd = 1
  [../]
  [./p0]
    type = PointValue
    point = '0 0 0'
    variable = pressure
  [../]
  [./mass_bal]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsHalfGaussianSink
    boundary = left
    variable = pressure
    centre = 1
    max = 2
    sd = 1
  [../]
  [./right_flux]
    type = RichardsHalfGaussianSink
    boundary = right
    variable = pressure
    centre = 1
    max = 2
    sd = 1
  [../]
[]

[Kernels]
  active = 'richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 4E-3
  end_time = 0.4
[]

[Outputs]
  file_base = s05
  csv = true
  execute_on = timestep_end
[]

test/tests/transfers/multiapp_copy_transfer/linear_lagrange_from_sub/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/tvdrk2/1d-linear.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -1
  xmax = 1
  nx = 20
  elem_type = EDGE2
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = x
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*x
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
    implicit = true
  [../]

  [./diff]
    type = Diffusion
    variable = u
    implicit = false
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
    implicit = false
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    variable = u
    function = ic
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  [./TimeIntegrator]
    type = ExplicitTVDRK2
  [../]
  solve_type = 'LINEAR'

  start_time = 0.0
  num_steps = 10
  dt = 0.001
  l_tol = 1e-15
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/combined/test/tests/inelastic_strain/elas_plas/elas_plas_nl1.i

#
# Test for effective strain calculation.
# Boundary conditions from NAFEMS test NL1
#
# This is not a verification test. The boundary conditions are applied such
# that the first step generates only elastic stresses. The second and third
# steps generate plastic deformation and the effective strain should be
# increasing throughout the run.
#
[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = one_elem2.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eff_plastic_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = VonMisesStress
    execute_on = timestep_end
  [../]
  [./pressure]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = pressure
    scalar_type = Hydrostatic
    execute_on = timestep_end
  [../]
  [./elastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./elastic_strain_yy]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./elastic_strain_zz]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./plastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./plastic_strain_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./plastic_strain_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./tot_strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = tot_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./tot_strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = tot_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./tot_strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = tot_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./eff_plastic_strain]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = eff_plastic_strain
  [../]
[]

[Functions]
  [./appl_dispy]
    type = PiecewiseLinear
    x = '0     1.0     2.0     3.0'
    y = '0.0 0.208e-4 0.50e-4 1.00e-4'
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 101
    value = 0.0
  [../]
  [./origin_x]
    type = DirichletBC
    variable = disp_x
    boundary = 103
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 102
    value = 0.0
  [../]
  [./origin_y]
    type = DirichletBC
    variable = disp_y
    boundary = 103
    value = 0.0
  [../]
  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = appl_dispy
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    youngs_modulus = 250e9
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputePlaneFiniteStrain
    block = 1
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'isoplas'
    block = 1
  [../]
  [./isoplas]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 5e6
    hardening_constant = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 20

  dt = 1.0
  start_time = 0.0
  num_steps = 100
  end_time = 3.0
[] # Executioner

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./stress_xy]
    type = ElementAverageValue
    variable = stress_xy
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./pressure]
    type = ElementAverageValue
    variable = pressure
  [../]
  [./el_strain_xx]
    type = ElementAverageValue
    variable = elastic_strain_xx
  [../]
  [./el_strain_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./el_strain_zz]
    type = ElementAverageValue
    variable = elastic_strain_zz
  [../]
  [./pl_strain_xx]
    type = ElementAverageValue
    variable = plastic_strain_xx
  [../]
  [./pl_strain_yy]
    type = ElementAverageValue
    variable = plastic_strain_yy
  [../]
  [./pl_strain_zz]
    type = ElementAverageValue
    variable = plastic_strain_zz
  [../]
  [./eff_plastic_strain]
    type = ElementAverageValue
    variable = eff_plastic_strain
  [../]
  [./tot_strain_xx]
    type = ElementAverageValue
    variable = tot_strain_xx
  [../]
  [./tot_strain_yy]
    type = ElementAverageValue
    variable = tot_strain_yy
  [../]
  [./tot_strain_zz]
    type = ElementAverageValue
    variable = tot_strain_zz
  [../]
  [./disp_x1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_x
  [../]
  [./disp_x4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_x
  [../]
  [./disp_y1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  [./console]
    type = Console
    output_linear = true
  [../]
[] # Outputs

modules/combined/test/tests/gap_heat_transfer_htonly/sphere2DRZ.i

#
# 2DRZ Spherical Gap Heat Transfer Test.
#
# This test exercises 2D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of an inner solid sphere of radius = 1 unit, and outer
# hollow sphere with an inner radius of 2. In other words, the gap between
# them is 1 radial unit in length.
#
# The conductivity of both spheres is set very large to achieve a uniform
# temperature in each sphere. The temperature of the center node of the
# inner sphere is ramped from 100 to 200 over one time unit. The
# temperature of the outside of the outer, hollow sphere is held fixed
# at 100.
#
# A simple analytical solution is possible for the integrated heat flux
# between the inner and outer spheres:
#
#  Integrated Flux = (T_left - T_right) * (gapK/(r^2*((1/r1)-(1/r2)))) * Area
#
# For gapK = 1 (default value)
#
# The area is taken as the area of the slave (inner) surface:
#
# Area = 4 * pi * 1^2 (4*pi*r^2)
#
# The integrated heat flux across the gap at time 1 is then:
#
# 4*pi*k*delta_T/((1/r1)-(1/r2))
# 4*pi*1*100/((1/1) - (1/2)) =  2513.3 watts
#
# For comparison, see results from the integrated flux post processors.
# This simulation makes use of symmetry, so only 1/2 of the spheres is meshed
# As such, the integrated flux from the post processors is 1/2 of the total,
# or 1256.6 watts... i.e. 400*pi.
# The value coming from the post processor is slightly less than this
# but converges as mesh refinement increases.
#
# Simulating contact is challenging. Regression tests that exercise
# contact features can be difficult to solve consistently across multiple
# platforms. While designing these tests, we felt it worth while to note
# some aspects of these tests. The following applies to:
# sphere3D.i, sphere2DRZ.i, cyl2D.i, and cyl3D.i.
# 1. We decided that to perform consistently across multiple platforms we
# would use very small convergence tolerance. In this test we chose an
# nl_rel_tol of 1e-12.
# 2. Due to such a high value for thermal conductivity (used here so that the
# domains come to a uniform temperature) the integrated flux at time = 0
# was relatively large (the value coming from SideIntegralFlux =
#  -_diffusion_coef[_qp]*_grad_u[_qp]*_normals[_qp] where the diffusion coefficient
# here is thermal conductivity).
# Even though _grad_u[_qp] is small, in this case the diffusion coefficient
# is large. The result is a number that isn't exactly zero and tends to
# fail exodiff. For this reason the parameter execute_on = initial should not
# be used. That parameter is left to default settings in these regression tests.
#
[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = cyl2D.e
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1'
    y = '100 200'
  [../]
[]


[Variables]
  [./temp]
    initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_conductance]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Kernels]
  [./heat_conduction]
    type = HeatConduction
    variable = temp
  [../]
[]


[AuxKernels]
  [./gap_cond]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_conductance
    boundary = 2
  [../]
[]

[Materials]
  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 1000000.0
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
    gap_conductivity = 1
    quadrature = true
    gap_geometry_type = SPHERE
    sphere_origin = '0 0 0'
  [../]
[]

[BCs]
  [./mid]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]
  [./temp_far_right]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  dt = 1
  dtmin = 0.01
  end_time = 1

  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-7

  [./Quadrature]
    order = fifth
    side_order = seventh
  [../]
[]

[Outputs]
  exodus = true
  [./Console]
    type = Console
  [../]
[]

[Postprocessors]
  [./temp_left]
    type = SideAverageValue
    boundary = 2
    variable = temp
  [../]

  [./temp_right]
    type = SideAverageValue
    boundary = 3
    variable = temp
  [../]

  [./flux_left]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
  [../]

  [./flux_right]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
  [../]
[]

modules/combined/test/tests/beam_eigenstrain_transfer/subapp1_uo_transfer.i

# SubApp with 2D model to test multi app vectorpostprocessor to aux var transfer

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 5
  xmin = 0.0
  xmax = 0.5
  ymin = 0.0
  ymax = 0.150080
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./temp]
  [../]
  [./axial_strain]
    order = FIRST
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t*(500.0)+300.0
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = SMALL
        incremental = true
        add_variables = true
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
  [../]
  [./axial_strain]
    type = RankTwoAux
    variable = axial_strain
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 298
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-9

  start_time = 0.0
  end_time = 0.075
  dt = 0.0125
  dtmin = 0.0001
[]

[Outputs]
  csv = true
  exodus = true
[]

[VectorPostprocessors]
  [./axial_str]
    type = LineValueSampler
    start_point = '0.5 0.0 0.0'
    end_point = '0.5 0.150080 0.0'
    variable = 'axial_strain'
    num_points = 21
    sort_by = 'id'
  [../]
[]

[Postprocessors]
  [./end_disp]
    type = PointValue
    variable = disp_y
    point = '0.5 0.150080 0.0'
  [../]
[]

modules/porous_flow/test/tests/actions/fullsat_brine.i

# Test the density, viscosity, enthalpy and internal energy
# calculated by the PorousFlowBrine material when using
# PorousFlowFullySaturated action.
# Density (rho) and enthalpy (h) From Driesner (2007), Geochimica et
# Cosmochimica Acta 71, 4902-4919 (2007).
# Viscosity from Phillips et al, A technical databook for
# geothermal energy utilization, LbL-12810 (1981).
# Internal energy = h - p / rho.
# Pressure 20 MPa
# Temperature 50C
# xnacl = 0.1047 (equivalent to 2.0 molality)

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[GlobalParams]
  block = '0'
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[PorousFlowFullySaturated]
  coupling_type = ThermoHydro
  porepressure = pp
  temperature = temp
  mass_fraction_vars = "nacl"
  use_brine = true
  nacl_index = 0
  dictator_name = dictator
[]

[Variables]
  [./pp]
    initial_condition = 20E6
  [../]
  [./temp]
    initial_condition = 323.15
  [../]
  [./nacl]
    initial_condition = 0.1047
  [../]
[]

[Kernels]
  # All provided by PorousFlowFullySaturated action
[]

[BCs]
  [./t_bdy]
    type = DirichletBC
    variable = temp
    boundary = 'left right'
    value = 323.15
  [../]
  [./p_bdy]
    type = DirichletBC
    variable = pp
    boundary = 'left right'
    value = 20E6
  [../]
  [./nacl_bdy]
    type = DirichletBC
    variable = nacl
    boundary = 'left right'
    value = 0.1047
  [../]
[]

[Postprocessors]
  [./pressure]
    type = ElementIntegralVariablePostprocessor
    variable = pp
  [../]
  [./temperature]
    type = ElementIntegralVariablePostprocessor
    variable = temp
  [../]
  [./xnacl]
    type = ElementIntegralVariablePostprocessor
    variable = nacl
  [../]
  [./density]
    type = ElementIntegralMaterialProperty
    mat_prop = 'PorousFlow_fluid_phase_density_qp0'
  [../]
  [./viscosity]
    type = ElementIntegralMaterialProperty
    mat_prop = 'PorousFlow_viscosity_qp0'
  [../]
  [./enthalpy]
    type = ElementIntegralMaterialProperty
    mat_prop = 'PorousFlow_fluid_phase_enthalpy_qp0'
  [../]
  [./energy]
    type = ElementIntegralMaterialProperty
    mat_prop = 'PorousFlow_fluid_phase_internal_energy_nodal0'
  [../]
[]

[Materials]
  # Thermal conductivity
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '3 0 0  0 3 0  0 0 3'
    wet_thermal_conductivity = '3 0 0  0 3 0  0 0 3'
  [../]

  # Specific heat capacity
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 850
    density = 2700
  [../]

  # Permeability
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-13 0 0  0 1E-13 0  0 0 1E-13'
  [../]

  # Porosity
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.3
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  file_base = fullsat_brine
  csv = true
  execute_on = 'timestep_end'
[]

modules/combined/test/tests/gap_heat_transfer_htonly/gap_heat_transfer_htonly_test.i

#
# 1-D Gap Heat Transfer Test without mechanics
#
# This test exercises 1-D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of two element blocks containing one element each.  Each
#   element is a unit cube.  They sit next to one another with a unit between them.
#
# The conductivity of both blocks is set very large to achieve a uniform temperature
#  across each block. The temperature of the far left boundary
#  is ramped from 100 to 200 over one time unit.  The temperature of the far right
#  boundary is held fixed at 100.
#
# A simple analytical solution is possible for the heat flux between the blocks:
#
#  Flux = (T_left - T_right) * (gapK/gap_width)
#
# The gap conductivity is specified as 1, thus
#
#  gapK(Tavg) = 1.0*Tavg
#
#
# The heat flux across the gap at time = 1 is then:
#
#  Flux(2) = 100 * (1.0/1.0) = 100
#
# For comparison, see results from the flux post processors
#
# This test has been augmented with a second scalar field that solves nearly
#   the same problem.  The conductivity has been changed to 10.  Thus, the
#   flux for the second field is 1000.
#


[Mesh]
  file = gap_heat_transfer_htonly_test.e
[]

[Functions]

  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '100 200 200'
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
  [../]
  [./awesomium_contact]
    type = GapHeatTransfer
    variable = awesomium
    master = 3
    slave = 2
    gap_conductivity = 10
    appended_property_name = _awesomium
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 100
  [../]
  [./awesomium]
    order = FIRST
    family = LAGRANGE
    initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_cond]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./gap_cond_awesomium]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./awe]
    type = HeatConduction
    variable = awesomium
  [../]
[]


[BCs]
  [./temp_far_left]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]
  [./temp_far_right]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
  [./awesomium_far_left]
    type = FunctionDirichletBC
    boundary = 1
    variable = awesomium
    function = temp
  [../]
  [./awesomium_far_right]
    type = DirichletBC
    boundary = 4
    variable = awesomium
    value = 100
  [../]
[]

[AuxKernels]
  [./conductance]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_cond
    boundary = 2
  [../]
  [./conductance_awe]
    type = MaterialRealAux
    property = gap_conductance_awesomium
    variable = gap_cond_awesomium
    boundary = 2
  [../]
[]

[Materials]

  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 100000000.0
  [../]
  [./density]
    type = Density
    block = '1 2'
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'
  nl_rel_tol = 1e-12
  l_tol = 1e-3
  l_max_its = 100

  dt = 1e-1
  end_time = 1.0
[]

[Postprocessors]

  [./temp_left]
    type = SideAverageValue
    boundary = 2
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./temp_right]
    type = SideAverageValue
    boundary = 3
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./flux_left]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
    execute_on = 'initial timestep_end'
  [../]

  [./flux_right]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
    execute_on = 'initial timestep_end'
  [../]

  [./awe_left]
    type = SideAverageValue
    boundary = 2
    variable = awesomium
    execute_on = 'initial timestep_end'
  [../]

  [./awe_right]
    type = SideAverageValue
    boundary = 3
    variable = awesomium
    execute_on = 'initial timestep_end'
  [../]

  [./awe_flux_left]
    type = SideFluxIntegral
    variable = awesomium
    boundary = 2
    diffusivity = thermal_conductivity
    execute_on = 'initial timestep_end'
  [../]

  [./awe_flux_right]
    type = SideFluxIntegral
    variable = awesomium
    boundary = 3
    diffusivity = thermal_conductivity
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/elastic_thermal_patch/elastic_thermal_patch.i

# Patch Test

# This test is designed to compute constant xx, yy, zz, xy, yz, and zx
#  stress on a set of irregular hexes.  The mesh is composed of one
#  block with seven elements.  The elements form a unit cube with one
#  internal element.  There is a nodeset for each exterior node.

# The cube is displaced by 1e-6 units in x, 2e-6 in y, and 3e-6 in z.
#  The faces are sheared as well (1e-6, 2e-6, and 3e-6 for xy, yz, and
#  zx).  This gives a uniform strain/stress state for all six unique
#  tensor components.

# With Young's modulus at 1e6 and Poisson's ratio at 0, the shear
#  modulus is 5e5 (G=E/2/(1+nu)).  Therefore, for the mechanical strain,
#
#  stress xx = 1e6 * 1e-6 = 1
#  stress yy = 1e6 * 2e-6 = 2
#  stress zz = 1e6 * 3e-6 = 3
#  stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 5e5 * 2e-6 / 2 = 1
#  stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5

# However, we must also consider the thermal strain.
# The temperature moves 100 degrees, and the coefficient of thermal
#  expansion is 1e-8.  Therefore, the thermal strain (and the displacement
#  since this is a unit cube) is 1e-6.

# Therefore, the overall effect is (at time 1, with a 50 degree delta):
#
#  stress xx = 1e6 * (1e-6-0.5e-6) = 0.5
#  stress yy = 1e6 * (2e-6-0.5e-6) = 1.5
#  stress zz = 1e6 * (3e-6-0.5e-6) = 2.5
#  stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 5e5 * 2e-6 / 2 = 1
#  stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5
#
# At time 2:
#
#  stress xx = 1e6 * (1e-6-1e-6) = 0
#  stress yy = 1e6 * (2e-6-1e-6) = 1
#  stress zz = 1e6 * (3e-6-1e-6) = 2
#  stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 5e5 * 2e-6 / 2 = 1
#  stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  temperature = temp
[]

[Mesh]
  file = elastic_thermal_patch_test.e
[]

[Functions]
  [./rampConstant1]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1e-6
  [../]
  [./rampConstant2]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 2e-6
  [../]
  [./rampConstant3]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 3e-6
  [../]
  [./rampConstant4]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 4e-6
  [../]
  [./rampConstant6]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 6e-6
  [../]
  [./tempFunc]
    type = PiecewiseLinear
    x = '0. 2.'
    y = '117.56 217.56'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules/TensorMechanics/Master/All]
  add_variables = true
  strain = FINITE
  eigenstrain_names = eigenstrain
  generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./node1_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./node1_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = rampConstant2
  [../]
  [./node1_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 1
    function = rampConstant3
  [../]

  [./node2_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = rampConstant1
  [../]
  [./node2_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = rampConstant2
  [../]
  [./node2_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 2
    function = rampConstant6
  [../]

  [./node3_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 3
    function = rampConstant1
  [../]
  [./node3_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./node3_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 3
    function = rampConstant3
  [../]

  [./node4_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./node4_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
  [./node4_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]

  [./node5_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 5
    function = rampConstant1
  [../]
  [./node5_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = rampConstant4
  [../]
  [./node5_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 5
    function = rampConstant3
  [../]

  [./node6_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 6
    function = rampConstant2
  [../]
  [./node6_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 6
    function = rampConstant4
  [../]
  [./node6_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 6
    function = rampConstant6
  [../]

  [./node7_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 7
    function = rampConstant2
  [../]
  [./node7_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 7
    function = rampConstant2
  [../]
  [./node7_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 7
    function = rampConstant3
  [../]

  [./node8_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 8
    function = rampConstant1
  [../]
  [./node8_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 8
    function = rampConstant2
  [../]
  [./node8_z]
    type = DirichletBC
    variable = disp_z
    boundary = 8
    value = 0.0
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = '10 12'
    function = tempFunc
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 0.333333333333333e6
    shear_modulus = 0.5e6
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 117.56
    thermal_expansion_coeff = 1e-8
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./heat]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-12

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_2/plane2_mu_0_2_pen_sm.i

[Mesh]
  file = plane2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_x = diag_saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = plane2_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = plane2_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

test/tests/outputs/intervals/sync_times.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 15
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  verbose = true
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = Exodus
    sync_times = '0.15 0.375 0.892'
    sync_only = true
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cto16.i

# Jacobian check for nonlinear, multi-surface plasticity.
# Returns to the tip of the tensile yield surface
# This is a very nonlinear test and a delicate test because it perturbs around
# a tip of the yield function where some derivatives are not well defined
#
# Plasticity models:
# Tensile with strength = 1MPa softening to 0.5MPa in 2E-2 strain
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]



[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./linesearch]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ld]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./constr_added]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./linesearch]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = linesearch
  [../]
  [./ld]
    type = MaterialRealAux
    property = plastic_linear_dependence_encountered
    variable = ld
  [../]
  [./constr_added]
    type = MaterialRealAux
    property = plastic_constraints_added
    variable = constr_added
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int0
    index = 0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int1
    index = 1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int2
    index = 2
  [../]
[]

[Postprocessors]
  [./max_int0]
    type = ElementExtremeValue
    variable = int0
    outputs = console
  [../]
  [./max_int1]
    type = ElementExtremeValue
    variable = int1
    outputs = console
  [../]
  [./max_int2]
    type = ElementExtremeValue
    variable = int2
    outputs = console
  [../]
  [./max_iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./av_linesearch]
    type = ElementAverageValue
    variable = linesearch
    outputs = 'console csv'
  [../]
  [./av_ld]
    type = ElementAverageValue
    variable = ld
    outputs = 'console csv'
  [../]
  [./av_constr_added]
    type = ElementAverageValue
    variable = constr_added
    outputs = 'console csv'
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console csv'
  [../]
[]


[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
  [./tensile]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = ts
    yield_function_tolerance = 1.0E-6  # Note larger value
    shift = 1.0E-6                     # Note larger value
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1.0E3 1.3E3'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '15 1 0.2  1 10 -0.3  -0.3 0.2 8'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-7

    plastic_models = 'tensile'
    max_NR_iterations = 5
    deactivation_scheme = 'safe'
    min_stepsize = 1
    tangent_operator = nonlinear
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]


[Outputs]
  file_base = cto16
  exodus = false
  csv = true
[]

test/tests/multiapps/multiple_position_files/multiple_position_files.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./multi]
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = 'sub1.i sub2.i'
    positions_file = 'position1.txt position2.txt'
    output_in_position = true
  [../]
[]

modules/tensor_mechanics/test/tests/material_limit_time_step/elas_plas/nafems_nl1_lim.i

#
# Tests material model IsotropicPlasticity with material based time stepper
# Boundary conditions from NAFEMS test NL1
#
[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]#Comment
  file = one_elem2.e
[] # Mesh

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[] # Variables

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_eff]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[] # AuxVariables

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./vonmises]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = VonMisesStress
    execute_on = timestep_end
  [../]
  [./elastic_strain_yy]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./plastic_strain_eff]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = plastic_strain_eff
  [../]
  [./tot_strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = tot_strain_yy
    index_i = 1
    index_j = 1
  [../]
[] # AuxKernels

[Functions]
  [./appl_dispx]
    type = PiecewiseLinear
    x = '0   1.0   2.0   3.0  4.0   5.0  6.0  7.0  8.0'
    y = '0.0 0.25e-4 0.50e-4 0.50e-4 0.50e-4 0.25e-4 0.0 0.0 0.0'
  [../]
  [./appl_dispy]
    type = PiecewiseLinear
    x = '0   1.0   2.0   3.0  4.0   5.0  6.0  7.0  8.0'
    y = '0.0 0.0  0.0 0.25e-4 0.50e-4 0.50e-4 0.50e-4  0.25e-4 0.0 '
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 101
    value = 0.0
  [../]
  [./origin_x]
    type = DirichletBC
    variable = disp_x
    boundary = 103
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 102
    value = 0.0
  [../]
  [./origin_y]
    type = DirichletBC
    variable = disp_y
    boundary = 103
    value = 0.0
  [../]
  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = appl_dispy
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = appl_dispx
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    youngs_modulus = 250e9
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputePlaneFiniteStrain
    block = 1
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'isoplas'
    block = 1
  [../]
  [./isoplas]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 5e6
    hardening_constant = 0.0
    relative_tolerance = 1e-20
    absolute_tolerance = 1e-8
    max_inelastic_increment = 0.000001
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 20

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.1
    time_t = '1.0  2.0  3.0  4.0  5.0  6.0  7.0  8.0'
    time_dt = '0.1 0.1  0.1  0.1  0.1  0.1  0.1  0.1'
    optimal_iterations = 30
    iteration_window = 9
    growth_factor = 2.0
    cutback_factor = 0.5
    timestep_limiting_postprocessor = matl_ts_min
  [../]

  start_time = 0.0
  num_steps = 1000
  end_time = 8.0
[] # Executioner

[Postprocessors]
  [./matl_ts_min]
    type = MaterialTimeStepPostprocessor
  [../]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./el_strain_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./plas_strain_eff]
    type = ElementAverageValue
    variable = plastic_strain_eff
  [../]
  [./tot_strain_yy]
    type = ElementAverageValue
    variable = tot_strain_yy
  [../]
  [./disp_x1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_x
  [../]
  [./disp_x4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_x
  [../]
  [./disp_y1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  [./console]
    type = Console
    output_linear = true
  [../]
[] # Outputs

modules/contact/test/tests/bouncing-block-contact/frictionless-mortar-fb-lm-mortar-disp.i

starting_point = 2e-1
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
  scaling = 1e0
[]

[Mesh]
  file = long-bottom-block-1elem-blocks.e
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
  [./normal_lm]
    block = 3
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [normal_lm]
    type = NormalMortarLMMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    slave_disp_y = disp_y
    use_displaced_mesh = true
    compute_primal_residuals = false
    ncp_function_type = 'fb'
  []
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  active = 'num_nl cumulative contact'
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '3'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/richards/test/tests/jacobian_2/jnQ2P.i

# quick two phase

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]


[UserObjects]
  [./DensityWater]
    type = RichardsDensityConstBulkCut
    dens0 = 1
    cut_limit = 1.1
    zero_point = -1.1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermWaterCubic]
    type = RichardsRelPermMonomial
    simm = 0.05
    n = 3
  [../]
  [./RelPermGas]
    type = Q2PRelPermPowerGas
    simm = 0.1
    n = 3
  [../]
[]

[Variables]
  [./pp]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
  [./sat]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
  [./nonQ2P_var]
  []
[]

[Q2P]
  porepressure = pp
  saturation = sat
  water_density = DensityWater
  water_relperm = RelPermWater
  water_relperm_for_diffusion = RelPermWaterCubic
  water_viscosity = 1
  gas_density = DensityGas
  gas_relperm = RelPermGas
  gas_viscosity = 1
  diffusivity = 1E-2
[]

[Kernels]
  [./nonQ2P_variable_check]
    type = BodyForce
    variable = nonQ2P_var
    function = 0
  [../]
[]


[Materials]
  [./rock]
    type = Q2PMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1.1 0 0  0 2.2 0  0 0 3.3'
    gravity = '1 2 3'
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jnQ2P
  exodus = false
[]

modules/combined/test/tests/contact_adaptivity/contact_initial_adaptivity.i

# This is a test of the usage of initial adaptivity with contact.
# It ensures that contact is enforced on the new nodes that are
# created due to refinement on the slave side of the interface.

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = 2blocks.e
  patch_size = 80
  parallel_type = replicated
[]

[AuxVariables]
  [./penetration]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./negramp]
    type = ParsedFunction
    value = -t/10
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  []
[]

[AuxKernels]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = negramp
  [../]
  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+6
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

[Adaptivity]
  steps = 0
  marker = box
  max_h_level = 2
  initial_steps = 2
  [./Markers]
    [./box]
      type = BoxMarker
      bottom_left = '0.5 -2.0 0.0'
      top_right = '0.75 2.0 0.0'
      inside = refine
      outside = do_nothing
    [../]
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.2
  end_time = 1.0
  l_tol = 1e-6
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
  console = true
[]

test/tests/transfers/multiapp_postprocessor_interpolation_transfer/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [from_sub]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [sub]
    positions = '0.2 0.2 0 0.7 0.7 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = 'sub0.i sub1.i'
  []
[]

[Transfers]
  [pp_transfer]
    direction = from_multiapp
    postprocessor = average
    variable = from_sub
    type = MultiAppPostprocessorInterpolationTransfer
    multi_app = sub
  []
[]

modules/combined/test/tests/sliding_block/sliding/dirac/sm/frictionless_kinematic_sm.i

#  This is a benchmark test that checks Dirac based frictionless
#  contact using the kinematic method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg  4    101'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.05
  end_time = 10
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+6
    formulation = kinematic
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_4/brick4_template2.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick4_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_x
  [../]
  [./disp_x64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_x
  [../]
  [./disp_y59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_y
  [../]
  [./disp_y64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x59 disp_y59 disp_x64 disp_y64 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/combined/test/tests/simple_contact/simple_contact_test2.i

[Mesh]
  file = contact.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx'
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 5e6
    formulation = penalty
    system = constraint
    master_slave_jacobian = false
    normalize_penalty = true
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]

  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'

  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/evolving_mass_density/shear_test_tensors.i

#  Element mass tests

#  This series of tests is designed to compute the mass of elements based on
#  an evolving mass density calculation.  The tests consist of expansion and compression
#  of the elastic patch test model along each axis, uniform expansion and compression,
#  and shear in each direction.  The expansion and compression tests change the volume of
#  the elements.  The corresponding change in density should compensate for this so the
#  mass remains constant.  The shear tests should not result in a volume change, and this
#  is checked too.  The mass calculation is done with the post processor called Mass.

#  The tests/file names are as follows:

#  Expansion and compression along a single axis
#  expand_compress_x_test_out.e
#  expand_compress_y_test_out.e
#  expand_compress_z_test_out.e

#  Volumetric expansion and compression
#  uniform_expand_compress_test.i

#  Zero volume change shear along each axis
#  shear_x_test_out.e
#  shear_y_test_out.e
#  shear_z_test_out.e

#  The resulting mass calculation for these tests should always be = 1.

# This test is a duplicate of the uniform_expand_compress_test.i test for solid mechanics, and the
#   output of this tensor mechanics test is compared to the original
#   solid mechanics output.  The duplication is necessary to test the
#   migrated tensor mechanics version while maintaining tests for solid mechanics.


[Mesh]
  file = elastic_patch.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./rampConstant1]
    type = PiecewiseLinear
    x = '0.00 1.00  2.0   3.00'
    y = '0.00 0.25  0.0  -0.25'
    scale_factor = 1
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./bot_x]
    type = DirichletBC
    variable = disp_x
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    value = 0
  [../]
  [./bot_z]
    type = DirichletBC
    variable = disp_z
    value = 0
  [../]

  [./top_x]
    variable = disp_x
    preset = false
  [../]
  [./top_y]
    variable = disp_y
    preset = false
  [../]
  [./top_z]
    variable = disp_z
    preset = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2 3 4 5 6 7'
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

  [./small_strain]
    type = ComputeSmallStrain
    block = ' 1 2 3 4 5 6 7'
  [../]

  [./elastic_stress]
    type = ComputeLinearElasticStress
    block = '1 2 3 4 5 6 7'
  [../]
[]

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10
  l_max_its = 20
  start_time = 0.0
  dt = 1.0
  num_steps = 3
  end_time = 3.0
[] # Executioner

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

[Postprocessors]
  [./Mass]
    type = Mass
    variable = disp_x
    execute_on = 'initial timestep_end'
  [../]
[]

modules/phase_field/test/tests/Nucleation/auxkernel.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  nz = 0
  xmin = 0
  xmax = 20
  ymin = 0
  ymax = 20
  elem_type = QUAD4
[]

[AuxVariables]
  [./c]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./c]
    type = DiscreteNucleationAux
    map = map
    variable = c
    no_nucleus_value = -1
    nucleus_value = 2
    execute_on = TIMESTEP_END
  [../]
[]

[UserObjects]
  [./inserter]
    type = DiscreteNucleationInserter
    hold_time = 0.4
    probability = 0.01
    seed = 12346
  [../]
  [./map]
    type = DiscreteNucleationMap
    radius = 3.27
    int_width = 2
    periodic = c
    inserter = inserter
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 10
  dt = 0.2
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/peridynamics/test/tests/simple_tests/2D_irregularD_variableH_BPD.i

# Test for bond-based peridynamic formulation
# for irregular grid from file mesh with varying bond constants

# Square plate with Dirichlet boundary conditions applied
# at the left, top and bottom edges

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./fmg]
    type = FileMeshGenerator
    file = square.e
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = fmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1001
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1004
    value = 0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1002
    function = '-0.001*t'
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = BOND
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.33
  [../]

  [./force_density]
    type = ComputeSmallStrainVariableHorizonMaterialBPD
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  end_time = 1
[]

[Outputs]
  file_base = 2D_irregularD_variableH_BPD
  exodus = true
[]

test/tests/outputs/transferred_scalar_variable/transferred_scalar_variable.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./average_scalar]
    family = SCALAR
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  csv = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub.i
  [../]
[]

[Transfers]
  [./average_transfer]
    type = MultiAppPostprocessorToAuxScalarTransfer
    direction = from_multiapp
    multi_app = sub
    from_postprocessor = average
    to_aux_scalar = average_scalar
  [../]
[]

modules/tensor_mechanics/test/tests/ad_thermal_expansion_function/dilatation.i

# This test checks the thermal expansion calculated via an dilatation function.
# The coefficient is selected so as to result in a 1e-4 strain in the x-axis, and to cross over
# from positive to negative strain.

[Mesh]
  [./gen]
    type = GeneratedMeshGenerator
    dim = 3
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
    use_automatic_differentiation = true
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    function = '1 + t'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ADComputeDilatationThermalExpansionFunctionEigenstrain
    dilatation_function = cte_dilatation
    stress_free_temperature = 1.5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_dilatation]
    type = PiecewiseLinear
    x = '1 2'
    y = '-1e-4 1e-4'
  [../]
[]

[Postprocessors]
  [./disp_x_max]
    type = SideAverageValue
    variable = disp_x
    boundary = right
  [../]
  [./temp_avg]
    type = ElementAverageValue
    variable = temp
  [../]
[]

[Executioner]
  type = Transient

  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

modules/richards/test/tests/jacobian_2/jn05.i

# two phase
# unsaturated = true

# gravity = false
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn05
  exodus = false
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_3d_as_2d.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with one element
#through the thickness, and calculates the J-Integrals using options
#to treat it as 2d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack_3d_as_2d.e
  partitioner = centroid
  centroid_partitioner_direction = z
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1
[]

[Outputs]
  file_base = j_integral_3d_as_2d_out
  exodus = true
  csv = true
[]

modules/contact/test/tests/bouncing-block-contact/bouncing-block-ranfs.i

starting_point = 2e-1
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
[]

[Mesh]
  file = long-bottom-block-no-lower-d.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [./disp_x]
    type = RANFSNormalMechanicalContact
    slave = 10
    master = 20
    variable = disp_x
    master_variable = disp_x
    component = x
  [../]
  [./disp_y]
    type = RANFSNormalMechanicalContact
    slave = 10
    master = 20
    variable = disp_y
    master_variable = disp_y
    component = y
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = 5
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -pc_hypre_type -mat_mffd_err'
  petsc_options_value = 'hypre    boomeramg      1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  [exo]
    type = Exodus
  []
  checkpoint = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
[]

test/tests/time_integrators/actually_explicit_euler/actually_explicit_euler_lump_preconditioned.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 'left'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 'right'
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.0001
  l_tol = 1e-12

  [./TimeIntegrator]
    type = ActuallyExplicitEuler
    solve_type = lump_preconditioned
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/element_variable_value/elemental_variable_value.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 1
  ymax = 0.1
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 10
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [./elem_left]
    type = ElementalVariableValue
    variable = u
    elementid = 0
  []
  [./elem_right]
    type = ElementalVariableValue
    variable = u
    elementid = 9
  []
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/sliding_block/sliding/constraint/sm/frictional_02_penalty_sm.i

#  This is a benchmark test that checks constraint based frictional
#  contact using the penalty method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  A friction coefficient of 0.2 is used.  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    friction_coefficient = 0.2
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cwpc01.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 20
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 2.055555555556E-01
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 10.0
    poisson = 0.25
    layer_thickness = 10.0
    joint_normal_stiffness = 2.5
    joint_shear_stiffness = 2.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '10 0 0  0 10 0  0 0 10'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneCosseratStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 1
    smoothing_tol = 1
    yield_function_tol = 1E-11
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  end_time = 1
  dt = 1
  type = Transient
[]

modules/phase_field/test/tests/PolynomialFreeEnergy/direct_order4_test.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmax = 125
[]

[GlobalParams]
  polynomial_order = 4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 60.0
    invalue = 1.0
    outvalue = 0.1
    int_width = 60.0
    variable = c
  [../]
[]

[Kernels]
  [./local_energy]
    type = CahnHilliard
    variable = c
    f_name = F
  [../]
  [./gradient_energy]
    type = CHInterface
    variable = c
    mob_name = M
    kappa_name = kappa
  [../]
  [./cdot]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./Copper]
    type = PFParamsPolyFreeEnergy
    c = c
    T = 1000 # K
    int_width = 30.0
    length_scale = 1.0e-9
    time_scale = 1.0e-9
    D0 = 3.1e-5 # m^2/s, from Brown1980
    Em = 0.71 # in eV, from Balluffi1978 Table 2
    Ef = 1.28 # in eV, from Balluffi1978 Table 2
    surface_energy = 0.7 # Total guess
  [../]
  [./free_energy]
    type = PolynomialFreeEnergy
    c = c
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = NEWTON
  petsc_options_iname = -pc_type
  petsc_options_value = lu

  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8

  start_time = 0.0
  num_steps = 100
  dt = 4
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/weak_plane_tensile/small_deform_hard3.i

# Checking evolution tensile strength
# A single element is stretched by 1E-6*t in z direction, and
# the yield-surface evolution is mapped out

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = x_disp
    boundary = front
    value = 0
  [../]
  [./topy]
    type = DirichletBC
    variable = y_disp
    boundary = front
    value = 0
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = front
    function = 1E-6*t
  [../]
[]

[AuxVariables]
  [./wpt_internal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./wpt_internal]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = wpt_internal
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./wpt_internal]
    type = PointValue
    point = '0 0 0'
    variable = wpt_internal
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningExponential
    value_0 = 10
    value_residual = 4
    rate = 1E6
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wpt
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-11
  [../]
[]


[Executioner]
  end_time = 4
  dt = 0.5
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/multiapps/multilevel/time_dt_from_master_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 100
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    x = '0     1'
    y = '0.25  1'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  dt = 0.25
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  exodus = true
  [./out]
    type = Console
    output_file = true
  [../]
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0 0.5 0.5 0'
    input_files = time_dt_from_master_sub.i
  [../]
[]

modules/porous_flow/test/tests/sinks/s02.i

# apply a sink flux with use_mobility=true and observe the correct behavior
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = y+1
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.3
      density0 = 1.1
      thermal_expansion = 0
      viscosity = 1.1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0.2 0 0 0 0.1 0 0 0 0.1'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[AuxVariables]
  [./flux_out]
  [../]
  [./xval]
  [../]
  [./yval]
  [../]
[]

[ICs]
  [./xval]
    type = FunctionIC
    variable = xval
    function = x
  [../]
  [./yval]
    type = FunctionIC
    variable = yval
    function = y
  [../]
[]

[Functions]
  [./mass00]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)'
    vars = 'vol por dens0 pp bulk'
    vals = '0.25 0.1 1.1 p00 1.3'
  [../]
  [./mass01]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)'
    vars = 'vol por dens0 pp bulk'
    vals = '0.25 0.1 1.1 p01 1.3'
  [../]
  [./expected_mass_change00]
    type = ParsedFunction
    value = 'fcn*perm*dens0*exp(pp/bulk)/visc*area*dt'
    vars = 'fcn perm dens0 pp bulk visc area dt'
    vals = '6   0.2  1.1  p00 1.3  1.1  0.5  1E-3'
  [../]
  [./expected_mass_change01]
    type = ParsedFunction
    value = 'fcn*perm*dens0*exp(pp/bulk)/visc*area*dt'
    vars = 'fcn perm dens0 pp bulk visc area dt'
    vals = '6   0.2  1.1  p01 1.3  1.1  0.5  1E-3'
  [../]
  [./mass00_expect]
    type = ParsedFunction
    value = 'mass_prev-mass_change'
    vars = 'mass_prev mass_change'
    vals = 'm00_prev  del_m00'
  [../]
  [./mass01_expect]
    type = ParsedFunction
    value = 'mass_prev-mass_change'
    vars = 'mass_prev mass_change'
    vals = 'm01_prev  del_m01'
  [../]
[]

[Postprocessors]
  [./p00]
    type = PointValue
    point = '0 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m00]
    type = FunctionValuePostprocessor
    function = mass00
    execute_on = 'initial timestep_end'
  [../]
  [./m00_prev]
    type = FunctionValuePostprocessor
    function = mass00
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./del_m00]
    type = FunctionValuePostprocessor
    function = expected_mass_change00
    execute_on = 'timestep_end'
    outputs = 'console'
  [../]
  [./m00_expect]
    type = FunctionValuePostprocessor
    function = mass00_expect
    execute_on = 'timestep_end'
  [../]
  [./p10]
    type = PointValue
    point = '1 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./p01]
    type = PointValue
    point = '0 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m01]
    type = FunctionValuePostprocessor
    function = mass01
    execute_on = 'initial timestep_end'
  [../]
  [./m01_prev]
    type = FunctionValuePostprocessor
    function = mass01
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./del_m01]
    type = FunctionValuePostprocessor
    function = expected_mass_change01
    execute_on = 'timestep_end'
    outputs = 'console'
  [../]
  [./m01_expect]
    type = FunctionValuePostprocessor
    function = mass01_expect
    execute_on = 'timestep_end'
  [../]
  [./p11]
    type = PointValue
    point = '1 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./flux]
    type = PorousFlowSink
    boundary = 'left'
    variable = pp
    use_mobility = true
    use_relperm = true
    fluid_phase = 0
    flux_function = 6
    save_in = flux_out
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_max_it -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu 10000 NONZERO 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-3
  end_time = 0.03
  nl_rel_tol = 1E-12
  nl_abs_tol = 1E-12
[]

[Outputs]
  file_base = s02
  [./console]
    type = Console
    execute_on = 'nonlinear linear'
    interval = 30
  [../]
  [./csv]
    type = CSV
    execute_on = 'timestep_end'
    interval = 3
  [../]
[]

modules/porous_flow/test/tests/energy_conservation/except01.i

# checking that the heat-energy postprocessor throws the correct error if the phase number is entered incorrectly
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 3
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./temp]
  [../]
[]

[ICs]
  [./tinit]
    type = FunctionIC
    function = '100*x'
    variable = temp
  [../]
  [./pinit]
    type = FunctionIC
    function = x
    variable = pp
  [../]
[]

[Kernels]
  [./dummyt]
    type = TimeDerivative
    variable = temp
  [../]
  [./dummyp]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      viscosity = 0.001
      thermal_expansion = 0
      cv = 1.3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 2.2
    density = 0.5
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Postprocessors]
  [./total_heat]
    type = PorousFlowHeatEnergy
    phase = 1
  [../]
  [./rock_heat]
    type = PorousFlowHeatEnergy
  [../]
  [./fluid_heat]
    type = PorousFlowHeatEnergy
    include_porous_skeleton = false
    phase = 0
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1 1 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = except01
  csv = true
[]

modules/tensor_mechanics/test/tests/cp_slip_rate_integ/crysp_substep.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    block = 0
  [../]
  [./disp_y]
    block = 0
  [../]
  [./disp_z]
    block = 0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./gss1]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss1
    property = gss
    index = 0
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCPSlipRateRes
    block = 0
    gtol = 1e-2
    slip_sys_file_name = input_slip_sys.txt
    nss = 12
    num_slip_sys_flowrate_props = 2 #Number of properties in a slip system
    flowprops = '1 4 0.001 0.01 5 8 0.001 0.01 9 12 0.001 0.01'
    hprops = '1.0 541.5 60.8 109.8 2.5'
    gprops = '1 4 60.8 5 8 60.8 9 12 60.8'
    tan_mod_type = exact
    slip_incr_tol = 1
    maximum_substep_iteration = 8
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./gss1]
    type = ElementAverageValue
    variable = gss1
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient


  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 0.2
  dtmax = 10.0
  dtmin = 0.05

  end_time = 1
[]

[Outputs]
  file_base = crysp_substep_out
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/weak_plane_tensile/small_deform_hard2.i

# Checking solution of hardening
# A single element is stretched by 1E-6 in z direction.
#
# Young's modulus = 20 MPa.  Tensile strength = 10 Exp(-1E6*q) Pa
#
# The trial stress is
# trial_stress_zz = Youngs Modulus*Strain = 2E7*1E-6 = 20 Pa
#
# Therefore the equations we have to solve are
# 0 = f = stress_zz - 10 Exp(-1E6*q)
# 0 = epp = ga - (20 - stress_zz)/2E7
# 0 = intnl = q - ga
#
# The result is
# q = 0.76803905E-6
# stress_zz = 4.6392191 Pa


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = x_disp
    boundary = front
    value = 0
  [../]
  [./topy]
    type = DirichletBC
    variable = y_disp
    boundary = front
    value = 0
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = front
    function = 1E-6*t
  [../]
[]

[AuxVariables]
  [./wpt_internal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./wpt_internal]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = wpt_internal
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./wpt_internal]
    type = PointValue
    point = '0 0 0'
    variable = wpt_internal
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningExponential
    value_0 = 10
    value_residual = 0
    rate = 1E6
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wpt
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-11
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard2
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_2phasePSVG.i

# Pressure pulse in 1D with 2 phases, 2components - transient

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./ppwater]
    initial_condition = 2e6
  [../]
  [./sgas]
    initial_condition = 0.3
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
  [./ppgas]
    family = MONOMIAL
    order = FIRST
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    variable = ppwater
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    variable = sgas
    fluid_component = 1
  [../]
[]

[AuxKernels]
  [./ppgas]
    type = PorousFlowPropertyAux
    property = pressure
    phase = 1
    variable = ppgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-4
    sat_lr = 0.3
    pc_max = 1e6
    log_extension = false
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 2e7
      density0 = 1
      thermal_expansion = 0
      viscosity = 1e-5
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-15 0 0 0 1e-15 0 0 0 1e-15'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 1
  [../]
[]

[BCs]
  [./leftwater]
    type = DirichletBC
    boundary = left
    value = 3e6
    variable = ppwater
  [../]
  [./rightwater]
    type = DirichletBC
    boundary = right
    value = 2e6
    variable = ppwater
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-20 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1e3
  end_time = 1e4
[]

[VectorPostprocessors]
  [./pp]
    type = LineValueSampler
    sort_by = x
    variable = 'ppwater ppgas'
    start_point = '0 0 0'
    end_point = '100 0 0'
    num_points = 11
  [../]
[]

[Outputs]
  file_base = pressure_pulse_1d_2phasePSVG
  print_linear_residuals = false
  [./csv]
    type = CSV
    execute_on = final
  [../]
[]

modules/porous_flow/test/tests/gravity/grav02f.i

# Checking that gravity head is established in the transient situation when 0<=saturation<=1 (note the less-than-or-equal-to).
# 2phase (PS), 2components, van Genuchten capillary pressure, constant fluid bulk-moduli for each phase, constant viscosity,
# constant permeability, Corey relative permeabilities with residual saturation

[Mesh]
  type = GeneratedMesh
  dim = 2
  ny = 10
  ymax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 -10 0'
[]

[Variables]
  [./ppwater]
    initial_condition = 1.5e6
  [../]
  [./sgas]
    initial_condition = 0.3
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
  [./ppgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./swater]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./relpermwater]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./relpermgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = sgas
  [../]
[]

[AuxKernels]
  [./ppgas]
    type = PorousFlowPropertyAux
    property = pressure
    phase = 1
    variable = ppgas
  [../]
  [./swater]
    type = PorousFlowPropertyAux
    property = saturation
    phase = 0
    variable = swater
  [../]
  [./relpermwater]
    type = MaterialStdVectorAux
    property = PorousFlow_relative_permeability_qp
    index = 0
    variable = relpermwater
  [../]
  [./relpermgas]
    type = PorousFlowPropertyAux
    property = relperm
    phase = 1
    variable = relpermgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-4
    pc_max = 2e5
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      viscosity = 1e-3
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 10
      viscosity = 1e-5
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-11 0 0 0 1e-11 0  0 0 1e-11'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.25
    sum_s_res = 0.35
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
    s_res = 0.1
    sum_s_res = 0.35
  [../]
[]

[Postprocessors]
  [./mass_ph0]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./mass_ph1]
    type = PorousFlowFluidMass
    fluid_component = 1
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_stol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-13 15'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1e5
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1e4
  [../]
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = grav02f
  exodus = true
  perf_graph = true
  csv = false
[]

modules/solid_mechanics/test/tests/j_integral/j_integral_3d_topo_q_func.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = crack3d.e
  displacements = 'disp_x disp_y disp_z'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  q_function_type = Topology
  ring_first = 1
  ring_last = 3
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = j_integral_3d_topo_q_func_out
  exodus = true
  csv = true
[]

test/tests/multiapps/sub_cycling_failure/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub.i
    sub_cycling = true
  [../]
[]

modules/porous_flow/test/tests/flux_limited_TVD_pflow/pffltvd_1D.i

# Using flux-limited TVD advection ala Kuzmin and Turek, mploying PorousFlow Kernels and UserObjects, with superbee flux-limiter
# 1D version
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '1 - x'
  [../]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = tracer
  [../]
  [./flux0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = advective_flux_calculator_0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = porepressure
  [../]
  [./flux1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = porepressure
    advective_flux_calculator = advective_flux_calculator_1
  [../]
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1
    boundary = left
  [../]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_component_1]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 1
    use_mobility = true
    flux_function = 1E3
  [../]
  [./remove_component_0]
    type = PorousFlowPiecewiseLinearSink
    variable = tracer
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 0
    use_mobility = true
    flux_function = 1E3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      thermal_expansion = 0
      viscosity = 1.0
      density0 = 1000.0
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure tracer'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
  [./advective_flux_calculator_0]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 0
  [../]
  [./advective_flux_calculator_1]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = tracer
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = the_simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-2 0 0   0 1E-2 0   0 0 1E-2'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 11
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  nl_abs_tol = 1E-8
  timestep_tolerance = 1E-3
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/porous_flow/test/tests/jacobian/heat_advection01.i

# 1phase, unsaturated, heat advection
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./temp]
  [../]
  [./pp]
  [../]
[]

[ICs]
  [./temp]
    type = RandomIC
    variable = temp
    max = 1.0
    min = 0.0
  [../]
  [./pp]
    type = RandomIC
    variable = pp
    max = 0.0
    min = -1.0
  [../]
[]

[Kernels]
  [./pp]
    type = TimeDerivative
    variable = pp
  [../]
  [./heat_advection]
    type = PorousFlowHeatAdvection
    variable = temp
    gravity = '1 2 3'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.6
    alpha = 1.3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 1.1
      thermal_expansion = 0
      viscosity = 1
      cv = 1.1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./PS]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/chemical_reactions/test/tests/exceptions/missing_sto.i

# Missing stoichiometric coefficient in AqueousEquilibriumRxnAux AuxKernel

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[AuxVariables]
  [./c]
  [../]
  [./gamma_a]
  [../]
  [./gamma_b]
  [../]
[]

[AuxKernels]
  [./c]
    type = AqueousEquilibriumRxnAux
    variable = c
    v = 'a b'
    gamma_v = 'gamma_a gamma_b'
    sto_v = 1
    log_k = 1
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = porosity
    prop_values = 0.2
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
[]

test/tests/functions/function_setup/function_setup_test.i

[Mesh]
  file = square.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./u_aux]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./ts_func]
    type = TimestepSetupFunction
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./u_td]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./ts_aux]
    type = FunctionAux
    variable = u_aux
    function = ts_func
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  nl_rel_tol = 1e-10
  num_steps = 5
  dt = 1
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/controls/time_periods/constraints/constraints.i

[Mesh]
  type = FileMesh
  file = constraints.e
  # NearestNodeLocator, which is needed by TiedValueConstraint,
  # only works with ReplicatedMesh currently
  parallel_type = replicated
[../]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 4
    value = 1
  [../]
[]

[Constraints]
  [./complete]
    type = TiedValueConstraint
    variable = u
    slave = 2
    master = 3
    master_variable = u
  [../]
  [./lower]
    type = TiedValueConstraint
    variable = u
    slave = inside_right_lower
    master = inside_left_lower
    master_variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 40
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Controls]
  [./constraints]
    type = TimePeriod
    disable_objects = 'Constraints/lower Constraint::complete'
    start_time      = '0.0   2.0'
    end_time        = '2.0   4.0'
    execute_on = 'initial timestep_begin'
  [../]
[]

test/tests/misc/check_error/scalar_kernel_with_var.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./rea]
    type = Reaction
    variable = u
  [../]
[]

[ScalarKernels]
  [./nope]
    type = ODETimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
[]

[Outputs]
  file_base = out
  exodus = true
[]

python/peacock/tests/common/lcf1.i

# LinearCombinationFunction function test
# See [Functions] block for a description of the tests

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 2
  nx = 10
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./the_linear_combo]
  [../]
[]

[AuxKernels]
  [./the_linear_combo]
    type = FunctionAux
    variable = the_linear_combo
    function = the_linear_combo
  [../]
[]


[Functions]
  [./xtimes]
    type = ParsedFunction
    value = 1.1*x
  [../]

  [./twoxplus1]
    type = ParsedFunction
    value = 2*x+1
  [../]

  [./xsquared]
    type = ParsedFunction
    value = (x-2)*x
  [../]

  [./tover2]
    type = ParsedFunction
    value = 0.5*t
  [../]

  [./the_linear_combo]
    type = LinearCombinationFunction
    functions = 'xtimes twoxplus1 xsquared tover2'
    w = '3 -1.2 0.4 3'
  [../]

  [./should_be_answer]
    type = ParsedFunction
    value = 3*1.1*x-1.2*(2*x+1)+0.4*(x-2)*x+3*0.5*t
  [../]
[]

[Postprocessors]
  [./should_be_zero]
    type = NodalL2Error
    function = should_be_answer
    variable = the_linear_combo
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = lcf1
  hide = dummy
  exodus = false
  csv = true
[]

framework/contrib/hit/test/input.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function has a constant value,
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# The two models produce very similar results.  There are slight
# differences due to the large deformation treatment.

[Mesh]
  file = 'blocks.e'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 3
    function = 0.02*t
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./back]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 1
    function = 0.01*t
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./mean_alpha]
    type = Elastic
    block = 1
    youngs_modulus = 1e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion_function = cte_func_mean
    stress_free_temperature = 0.0
    thermal_expansion_reference_temperature = 0.5
    thermal_expansion_function_type = mean
  [../]

  [./inst_alpha]
    type = Elastic
    block = 2
    youngs_modulus = 1e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    thermal_expansion_function_type = instantaneous
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (t - tsf) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 1.0
               2 1.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  file_base = const_alpha_out
  exodus = true
  csv = true
[]

test/tests/outputs/console/multiapp/picard_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_abs_tol = 1e-14
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = picard_sub.i
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

modules/combined/examples/phase_field-mechanics/kks_mechanics_KHS.i

# KKS phase-field model coupled with elasticity using Khachaturyan's scheme as
# described in L.K. Aagesen et al., Computational Materials Science, 140, 10-21 (2017)
# Original run #170403a

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 640
  ny = 1
  nz = 1
  xmin = -10
  xmax = 10
  ymin = 0
  ymax = 0.03125
  zmin = 0
  zmax = 0.03125
  elem_type = HEX8
[]


[Variables]
  # order parameter
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]

  # solute concentration
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]

  # chemical potential
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]

  # solute phase concentration (matrix)
  [./cm]
    order = FIRST
    family = LAGRANGE
  [../]
  # solute phase concentration (precipitate)
  [./cp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./eta_ic]
    variable = eta
    type = FunctionIC
    function = ic_func_eta
    block = 0
  [../]
  [./c_ic]
    variable = c
    type = FunctionIC
    function = ic_func_c
    block = 0
  [../]
  [./w_ic]
    variable = w
    type = ConstantIC
    value = 0.00991
    block = 0
  [../]
  [./cm_ic]
    variable = cm
    type = ConstantIC
    value = 0.131
    block = 0
  [../]
  [./cp_ic]
    variable = cp
    type = ConstantIC
    value = 0.236
    block = 0
  [../]
[]

[Functions]
  [./ic_func_eta]
    type = ParsedFunction
    value = '0.5*(1.0+tanh((x)/delta_eta/sqrt(2.0)))'
    vars = 'delta_eta'
    vals = '0.8034'
  [../]
  [./ic_func_c]
    type = ParsedFunction
    value = '0.2389*(0.5*(1.0+tanh(x/delta/sqrt(2.0))))^3*(6*(0.5*(1.0+tanh(x/delta/sqrt(2.0))))^2-15*(0.5*(1.0+tanh(x/delta/sqrt(2.0))))+10)+0.1339*(1-(0.5*(1.0+tanh(x/delta/sqrt(2.0))))^3*(6*(0.5*(1.0+tanh(x/delta/sqrt(2.0))))^2-15*(0.5*(1.0+tanh(x/delta/sqrt(2.0))))+10))'
    vars = 'delta'
    vals = '0.8034'
  [../]
  [./psi_eq_int]
    type = ParsedFunction
    value = 'volume*psi_alpha'
    vars = 'volume psi_alpha'
    vals = 'volume psi_alpha'
  [../]
  [./gamma]
    type = ParsedFunction
    value = '(psi_int - psi_eq_int) / dy / dz'
    vars = 'psi_int psi_eq_int dy       dz'
    vals = 'psi_int psi_eq_int 0.03125  0.03125'
  [../]
[]

[AuxVariables]
  [./sigma11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sigma22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sigma33]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e12]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e33]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_el11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_el12]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_el22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_el]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eigen_strain00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./Fglobal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./psi]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./matl_sigma11]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = sigma11
  [../]
  [./matl_sigma22]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = sigma22
  [../]
  [./matl_sigma33]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = sigma33
  [../]
  [./matl_e11]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 0
    variable = e11
  [../]
  [./f_el]
    type = MaterialRealAux
    variable = f_el
    property = f_el_mat
    execute_on = timestep_end
  [../]
  [./GlobalFreeEnergy]
    variable = Fglobal
    type = KKSGlobalFreeEnergy
    fa_name = fm
    fb_name = fp
    w = 0.0264
    kappa_names = kappa
    interfacial_vars = eta
  [../]
  [./psi_potential]
    variable = psi
    type = ParsedAux
    args = 'Fglobal w c f_el sigma11 e11'
    function = 'Fglobal - w*c + f_el - sigma11*e11'
  [../]
[]


[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0
  [../]
  [./front_y]
    type = DirichletBC
    variable = disp_y
    boundary = front
    value = 0
  [../]
  [./back_y]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value = 0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0
  [../]
[]

[Materials]
  # Chemical free energy of the matrix
  [./fm]
    type = DerivativeParsedMaterial
    f_name = fm
    args = 'cm'
    function = '6.55*(cm-0.13)^2'
  [../]

  # Chemical Free energy of the precipitate phase
  [./fp]
    type = DerivativeParsedMaterial
    f_name = fp
    args = 'cp'
    function = '6.55*(cp-0.235)^2'
  [../]

# Elastic energy of the precipitate
  [./elastic_free_energy_p]
    type = ElasticEnergyMaterial
    f_name = f_el_mat
    args = 'eta'
    outputs = exodus
  [../]


  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
  [../]

  # 1- h(eta), putting in function explicitly
  [./one_minus_h_eta_explicit]
    type = DerivativeParsedMaterial
    f_name = one_minus_h_explicit
    args = eta
    function = 1-eta^3*(6*eta^2-15*eta+10)
    outputs = exodus
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'M   L   kappa      misfit'
    prop_values = '0.7 0.7 0.01704    0.00377'
  [../]

  #Mechanical properties
  [./Stiffness_matrix]
    type = ComputeElasticityTensor
    base_name = C_matrix
    C_ijkl = '103.3 74.25 74.25 103.3 74.25 103.3 46.75 46.75 46.75'
    fill_method = symmetric9
  [../]
  [./Stiffness_ppt]
    type = ComputeElasticityTensor
    C_ijkl = '100.7 71.45 71.45 100.7 71.45 100.7 50.10 50.10 50.10'
    base_name = C_ppt
    fill_method = symmetric9
  [../]
  [./C]
    type = CompositeElasticityTensor
    args = eta
    tensors = 'C_matrix               C_ppt'
    weights = 'one_minus_h_explicit   h'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = 'eigenstrain_ppt'
  [../]
  [./eigen_strain]
    type = ComputeVariableEigenstrain
    eigen_base = '0.00377 0.00377 0.00377 0 0 0'
    prefactor = h
    args = eta
    eigenstrain_name = 'eigenstrain_ppt'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]

  # enforce c = (1-h(eta))*cm + h(eta)*cp
  [./PhaseConc]
    type = KKSPhaseConcentration
    ca       = cm
    variable = cp
    c        = c
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotVacancies]
    type = KKSPhaseChemicalPotential
    variable = cm
    cb       = cp
    fa_name  = fm
    fb_name  = fp
  [../]

  #
  # Cahn-Hilliard Equation
  #
  [./CHBulk]
    type = KKSSplitCHCRes
    variable = c
    ca       = cm
    fa_name  = fm
    w        = w
  [../]

  [./dcdt]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./ckernel]
    type = SplitCHWRes
    mob_name = M
    variable = w
  [../]

  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = fm
    fb_name  = fp
    w        = 0.0264
    args = 'cp cm'
  [../]
  [./ACBulkC]
    type = KKSACBulkC
    variable = eta
    ca       = cm
    cb       = cp
    fa_name  = fm
  [../]
  [./ACBulk_el] #This adds df_el/deta for strain interpolation
    type = AllenCahn
    variable = eta
    f_name = f_el_mat
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = kappa
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       ilu            nonzero'

  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-11
  num_steps = 200

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.5
  [../]
[]

[Postprocessors]
  [./f_el_int]
    type = ElementIntegralMaterialProperty
    mat_prop = f_el_mat
  [../]
  [./c_alpha]
    type =  SideAverageValue
    boundary = left
    variable = c
  [../]
  [./c_beta]
    type =  SideAverageValue
    boundary = right
    variable = c
  [../]
  [./e11_alpha]
    type =  SideAverageValue
    boundary = left
    variable = e11
  [../]
  [./e11_beta]
    type =  SideAverageValue
    boundary = right
    variable = e11
  [../]
  [./s11_alpha]
    type =  SideAverageValue
    boundary = left
    variable = sigma11
  [../]
  [./s22_alpha]
    type =  SideAverageValue
    boundary = left
    variable = sigma22
  [../]
  [./s33_alpha]
    type =  SideAverageValue
    boundary = left
    variable = sigma33
  [../]
  [./s11_beta]
    type =  SideAverageValue
    boundary = right
    variable = sigma11
  [../]
  [./s22_beta]
    type =  SideAverageValue
    boundary = right
    variable = sigma22
  [../]
  [./s33_beta]
    type =  SideAverageValue
    boundary = right
    variable = sigma33
  [../]
  [./f_el_alpha]
    type =  SideAverageValue
    boundary = left
    variable = f_el
  [../]
  [./f_el_beta]
    type =  SideAverageValue
    boundary = right
    variable = f_el
  [../]
  [./f_c_alpha]
    type =  SideAverageValue
    boundary = left
    variable = Fglobal
  [../]
  [./f_c_beta]
    type =  SideAverageValue
    boundary = right
    variable = Fglobal
  [../]
  [./chem_pot_alpha]
    type =  SideAverageValue
    boundary = left
    variable = w
  [../]
  [./chem_pot_beta]
    type =  SideAverageValue
    boundary = right
    variable = w
  [../]
  [./psi_alpha]
    type =  SideAverageValue
    boundary = left
    variable = psi
  [../]
  [./psi_beta]
    type =  SideAverageValue
    boundary = right
    variable = psi
  [../]
  [./total_energy]
    type = ElementIntegralVariablePostprocessor
    variable = Fglobal
  [../]
  # Get simulation cell size from postprocessor
  [./volume]
    type = ElementIntegralMaterialProperty
    mat_prop = 1
  [../]
  [./psi_eq_int]
    type = FunctionValuePostprocessor
    function = psi_eq_int
  [../]
  [./psi_int]
    type = ElementIntegralVariablePostprocessor
    variable = psi
  [../]
  [./gamma]
    type = FunctionValuePostprocessor
    function = gamma
  [../]
  [./int_position]
    type = FindValueOnLine
    start_point = '-10 0 0'
    end_point = '10 0 0'
    v = eta
    target = 0.5
  [../]
[]

#
# Precondition using handcoded off-diagonal terms
#
[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]


[Outputs]
  [./exodus]
    type = Exodus
    interval = 20
  [../]
  checkpoint = true
  [./csv]
    type = CSV
    execute_on = 'final'
  [../]
[]

modules/richards/test/tests/gravity_head_2/gh_fu_05.i

# unsaturated = true
# gravity = false
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = RandomIC
    min = 0.2
    max = 0.8
    variable = pwater
  [../]
  [./gas_ic]
    type = RandomIC
    min = 1.2
    max = 1.8
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((p0-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((p0-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh_fu_05
  csv = true
[]

modules/combined/test/tests/multiphase_mechanics/gradientcomponent.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./v]
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0.5
      y1 = 0.5
      radius = 0.2
      invalue = 1
      outvalue = 0
      int_width = 0.2
    [../]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = v
  [../]
  [./dt]
    type = TimeDerivative
    variable = v
  [../]
  [./gradientcomponent]
    type = GradientComponent
    variable = u
    v = v
    component = 0
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  num_steps = 2
  solve_type = 'NEWTON'
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/picard_multilevel/picard_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./coupled_force]
    type = CoupledForce
    variable = u
    v = v
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
#  picard_force_norms = true
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub1]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = picard_sub.i
    execute_on = 'timestep_end'
  [../]
[]

[Transfers]
  [./v]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub1
    source_variable = v
    variable = v
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_2/cyl2_template1_sm.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[Mesh]
  file = cyl2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

test/tests/time_steppers/timesequence_stepper/timesequence_restart3.i

[Mesh]
  file = timesequence_restart1_cp/0002_mesh.cpr
[]

[Problem]
  restart_file_base = timesequence_restart1_cp/0002
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  end_time = 4.5
  [./TimeStepper]
    type = TimeSequenceStepper
    time_sequence  = '0   0.85 1.3 1.9 2 4 4.5'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/peridynamics/test/tests/simple_tests/2D_regularD_variableH_OSPD.i

# Test for ordinary state-based peridynamic formulation
# for regular grid from generated mesh with varying bond constants
# partial Jacobian
# Jacobian from bond-based formulation is used for preconditioning

# Square plate with Dirichlet boundary conditions applied
# at the left, top and bottom edges

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1002
    value = 0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1000
    function = '-0.001*t'
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = ORDINARY_STATE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.0
  [../]

  [./force_density]
    type = ComputeSmallStrainVariableHorizonMaterialOSPD
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  end_time = 1
[]

[Outputs]
  file_base = 2D_regularD_variableH_OSPD
  exodus = true
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking_plane_stress.i

################################################################################
#
# 1x1x1 cube, single element
# simulate plane stress
# pull in +y direction on right surface to produce shear strain
#
#
#
#          ____________
#         /|          /|
#        / |  5      / |                       -X  Left   1
#       /__________ /  |                       +X  Right  4
#      |   |    3  |   |                       +Y  Top    5
#      | 1 |       | 4 |                       -Y  Bottom 2
#      |   |_6_____|___|           y           +Z  Front  6
#      |  /        |  /            ^           -Z  Back   3
#      | /    2    | /             |
#      |/__________|/              |
#                                  ----> x
#                                 /
#                                /
#                               z
#
#
#
#################################################################################

[Mesh]
  file = cube.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./displ]
    type = PiecewiseLinear
    x = '0 0.1 0.2 0.3 0.4'
    y = '0 0.0026 0 -0.0026 0'
  [../]
  [./pressure]
    type = PiecewiseLinear
    x = '0 0.1 0.2 0.3 0.4'
    y = '0 0   0    0   0'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[BCs]
  [./pull_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = displ
  [../]
  [./pin_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1  4'
    value = 0.0
  [../]
  [./pin_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = '3'
    value = 0.0
  [../]
  [./front]
    type = Pressure
    variable = disp_z
    component = 2
    boundary = 6
    function = pressure
    factor   = 1.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 200.0e3
    poissons_ratio = .3
  [../]
  [./elastic_stress]
    type = ComputeSmearedCrackingStress
    cracking_stress = 120
    shear_retention_factor = 0.1
    softening_models = exponential_softening
  [../]
  [./exponential_softening]
    type = ExponentialSoftening
    residual_stress = 0.1
    beta = 0.1
  [../]
[]

[Executioner]
  type = Transient
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-ksp_gmres_restart -pc_type -sub_pc_type'
  petsc_options_value = '101                asm      lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-8
  l_tol = 1e-5
  start_time = 0.0
  end_time = 0.4
  dt = 0.04
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/poro_elasticity/pp_generation_unconfined_fully_saturated_volume.i

# A sample is constrained on all sides, except its top
# and its boundaries are
# also impermeable.  Fluid is pumped into the sample via a
# volumetric source (ie m^3/second per cubic meter), and the
# rise in the top surface, porepressure, and stress are observed.
#
# In the standard poromechanics scenario, the Biot Modulus is held
# fixed and the source has units 1/s.  Then the expected result
# is
# strain_zz = disp_z = BiotCoefficient*BiotModulus*s*t/((bulk + 4*shear/3) + BiotCoefficient^2*BiotModulus)
# porepressure = BiotModulus*(s*t - BiotCoefficient*strain_zz)
# stress_xx = (bulk - 2*shear/3)*strain_zz   (remember this is effective stress)
# stress_zz = (bulk + 4*shear/3)*strain_zz   (remember this is effective stress)
#
# In standard porous_flow, everything is based on mass, eg the source has
# units kg/s/m^3.  This is discussed in the other pp_generation_unconfined
# models.  In this test, we use the FullySaturated Kernel and set
# multiply_by_density = false
# meaning the fluid Kernel has units of volume, and the source, s, has units 1/time
#
# The ratios are:
# stress_xx/strain_zz = (bulk - 2*shear/3) = 1 (for the parameters used here)
# stress_zz/strain_zz = (bulk + 4*shear/3) = 4 (for the parameters used here)
# porepressure/strain_zz = 13.3333333 (for the parameters used here)
#
# Expect
# disp_z = 0.3*10*s*t/((2 + 4*1.5/3) + 0.3^2*10) = 0.612245*s*t
# porepressure = 10*(s*t - 0.3*0.612245*s*t) = 8.163265*s*t
# stress_xx = (2 - 2*1.5/3)*0.612245*s*t = 0.612245*s*t
# stress_zz = (2 + 4*shear/3)*0.612245*s*t = 2.44898*s*t
#
# Finally, note that the volumetric strain has
# consistent_with_displaced_mesh = false
# which is needed when using the FullySaturated version of the Kernels
# in order to generate the above results

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 2
    variable = disp_z
  [../]
  [./mass0]
    type = PorousFlowFullySaturatedMassTimeDerivative
    variable = porepressure
    multiply_by_density = false
    coupling_type = HydroMechanical
    biot_coefficient = 0.3
  [../]
  [./source]
    type = BodyForce
    function = 0.1
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 3.3333333333
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
    consistent_with_displaced_mesh = false
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # the "const" is irrelevant here: all that uses Porosity is the BiotModulus, which just uses the initial value of porosity
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.3
    fluid_bulk_modulus = 3.3333333333
    solid_bulk_compliance = 0.5
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./stress_xx_over_strain]
    type = FunctionValuePostprocessor
    function = stress_xx_over_strain_fcn
    outputs = csv
  [../]
  [./stress_zz_over_strain]
    type = FunctionValuePostprocessor
    function = stress_zz_over_strain_fcn
    outputs = csv
  [../]
  [./p_over_strain]
    type = FunctionValuePostprocessor
    function = p_over_strain_fcn
    outputs = csv
  [../]
[]

[Functions]
  [./stress_xx_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'stress_xx zdisp'
  [../]
  [./stress_zz_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'stress_zz zdisp'
  [../]
  [./p_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'p0 zdisp'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = pp_generation_unconfined_fully_saturated_volume
  [./csv]
    type = CSV
  [../]
[]

modules/tensor_mechanics/test/tests/2D_different_planes/gps_jacobian_testing_xy.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = square_xy_plane.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[Modules/TensorMechanics/Master]
  [./generalized_plane_strain]
    block = 1
    strain = SMALL
    scalar_out_of_plane_strain = scalar_strain_zz
    out_of_plane_direction = z
    planar_formulation = GENERALIZED_PLANE_STRAIN
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.0
    youngs_modulus = 1
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-ksp_type -pc_type -snes_type'
  petsc_options_value = 'bcgs bjacobi test'

  end_time = 1.0
[]

modules/porous_flow/test/tests/poro_elasticity/vol_expansion.i

# Apply an increasing porepressure, with zero mechanical forces,
# and observe the corresponding volumetric expansion
#
# P = t
# With the Biot coefficient being 0.3, the effective stresses should be
# stress_xx = stress_yy = stress_zz = 0.3t
# With bulk modulus = 1 then should have
# vol_strain = strain_xx + strain_yy + strain_zz = 0.3t.
# I use a single element lying 0<=x<=1, 0<=y<=1 and 0<=z<=1, and
# fix the left, bottom and back boundaries appropriately,
# so at the point x=y=z=1, the displacements should be
# disp_x = disp_y = disp_z = 0.3t/3 (small strain physics is used)
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = 0
  PorousFlowDictator = dictator
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./p]
  [../]
[]

[BCs]
  [./p]
    type = FunctionDirichletBC
    boundary = 'bottom top'
    variable = p
    function = t
  [../]
  [./xmin]
    type = DirichletBC
    boundary = left
    variable = disp_x
    value = 0
  [../]
  [./ymin]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0
  [../]
  [./zmin]
    type = DirichletBC
    boundary = back
    variable = disp_z
    value = 0
  [../]
[]

[Kernels]
  [./p_does_not_really_diffuse]
    type = Diffusion
    variable = p
  [../]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_z
    component = 2
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./corner_x]
    type = PointValue
    point = '1 1 1'
    variable = disp_x
  [../]
  [./corner_y]
    type = PointValue
    point = '1 1 1'
    variable = disp_y
  [../]
  [./corner_z]
    type = PointValue
    point = '1 1 1'
    variable = disp_z
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'p'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    # bulk modulus = 1, poisson ratio = 0.2
    C_ijkl = '0.5 0.75'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = p
    capillary_pressure = pc
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol'
    petsc_options_value = 'gmres bjacobi 1E-10 1E-10 10 1E-15 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  dt = 0.1
  end_time = 1
[]

[Outputs]
  file_base = vol_expansion
  exodus = true
[]

modules/tensor_mechanics/test/tests/beam/eigenstrain/thermal_expansion_small.i

# Test for thermal expansion eigenstrain

# A beam of length 4m fixed at one end is heated from 0 to 100 degrees
# celcius. The beam has a thermal expansion coefficient of 1e-4.
# The thermal expansion eigenstrain is 1e-2 which leads to the change
# in length of 0.04 m irrespective of the material properties of the
# beam.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.5
    Ay = 0.0
    Az = 0.0
    Iy = 0.01
    Iz = 0.01
    y_orientation = '0.0 1.0 0.0'
    eigenstrain_names = 'thermal'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
  [./thermal]
    type = ComputeThermalExpansionEigenstrainBeam
    thermal_expansion_coeff = 1e-4
    temperature = 100
    stress_free_temperature = 0
    eigenstrain_name = thermal
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/vectorpostprocessors/point_value_sampler_history/point_value_sampler_history.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[VectorPostprocessors]
  [./point_sample]
    type = PointValueSampler
    variable = 'u'
    points = '0.1 0.1 0'
    sort_by = x

    contains_complete_history = true
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian/coss_elastic.i

#Cosserat elastic, using ComputeMultipleInelasticCosseratStress
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 10.0
    poisson = 0.25
    layer_thickness = 10.0
    joint_normal_stiffness = 2.5
    joint_shear_stiffness = 2.0
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '5 1 2  1 4 3  2.1 3.1 1'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  end_time = 1
  dt = 1
  type = Transient
[]

modules/combined/test/tests/simple_contact/sm/merged_sm.i

[GlobalParams]
  volumetric_locking_correction = false
[]

[Mesh]
  file = merged.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[DiracKernels]
  [./master_x]
    type = ContactMaster
    variable = disp_x
    component = 0
    boundary = 3
    slave = 2
  [../]

  [./master_y]
    type = ContactMaster
    variable = disp_y
    component = 1
    boundary = 3
    slave = 2
  [../]

  [./master_z]
    type = ContactMaster
    variable = disp_z
    component = 2
    boundary = 3
    slave = 2
  [../]

  [./slave_x]
    type = SlaveConstraint
    variable = disp_x
    component = 0
    boundary = 2
    master = 3
  [../]

  [./slave_y]
    type = SlaveConstraint
    variable = disp_y
    component = 1
    boundary = 2
    master = 3
  [../]

  [./slave_z]
    type = SlaveConstraint
    variable = disp_z
    component = 2
    boundary = 2
    master = 3
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]

  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type '
  petsc_options_value = 'lu       '

  line_search = 'none'

  nl_abs_tol = 1e-8

  l_max_its = 20
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  file_base = merged_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/stochastic_tools/test/tests/multiapps/sampler_transient_multiapp/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
    #    coef = 0.1
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/numerical_diffusion/fltvd.i

# Using Flux-Limited TVD Advection ala Kuzmin and Turek, with antidiffusion from superbee flux limiting
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[Variables]
  [./tracer]
  [../]
[]

[ICs]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass_dot]
    type = MassLumpedTimeDerivative
    variable = tracer
  [../]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = superbee
    u = tracer
    velocity = '0.1 0 0'
  [../]
[]

[BCs]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_tracer]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = right
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 101
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  nl_abs_tol = 1E-8
  nl_max_its = 500
  timestep_tolerance = 1E-3
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/multiapps/relaxation/picard_relaxed_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
    initial_condition = 1
  [../]
  [./inverse_v]
    initial_condition = 1
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = inverse_v
  [../]
[]

[AuxKernels]
  [./invert_v]
    type = QuotientAux
    variable = inverse_v
    denominator = v
    numerator = 20.0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./Neumann_right]
    type = NeumannBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_abs_tol = 1e-14
  relaxation_factor = 0.95
  relaxed_variables = u
[]

[Outputs]
  exodus = true
  execute_on = 'INITIAL TIMESTEP_END'
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_begin
    positions = '0 0 0'
    input_files = picard_relaxed_sub.i
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

modules/combined/test/tests/mortar_tm/2drz/frictionless_second/finite_noaction.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_noaction'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]

  [./slave]
    input = block_sidesets
    type = LowerDBlockFromSidesetGenerator
    sidesets = 'block_left'
    new_block_id = '30'
    new_block_name = 'frictionless_slave_subdomain'
  [../]
  [./master]
    input = slave
    type = LowerDBlockFromSidesetGenerator
    sidesets = 'plank_right'
    new_block_id = '20'
    new_block_name = 'frictionless_master_subdomain'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./frictionless_normal_lm]
    order = ${order}
    block = 'frictionless_slave_subdomain'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
  [../]
  [./plank]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
  [../]
[]

[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = block_left
    master = plank_right
    variable = frictionless_normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = min
    use_displaced_mesh = true
  [../]
  [./normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = plank_right
    slave_boundary = block_left
    master_subdomain = frictionless_master_subdomain
    slave_subdomain = frictionless_slave_subdomain
    variable = frictionless_normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  [../]
  [./normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = plank_right
    slave_boundary = block_left
    master_subdomain = frictionless_master_subdomain
    slave_subdomain = frictionless_slave_subdomain
    variable = frictionless_normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_2/ring2_mu_0_2_pen.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring2_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = ring2_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = ring2_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/phase_field/test/tests/MultiPhase/lagrangemult.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 14
  ny = 10
  nz = 0
  xmin = 10
  xmax = 40
  ymin = 15
  ymax = 35
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 25.0
      y1 = 25.0
      radius = 6.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 3.0
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]

  [./eta1]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 30.0
      y1 = 25.0
      radius = 4.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 2.0
    [../]
  [../]
  [./eta2]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.5
  [../]

  [./lambda]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1.0
  [../]
[]

[Kernels]
  [./deta1dt]
    type = TimeDerivative
    variable = eta1
  [../]
  [./ACBulk1]
    type = AllenCahn
    variable = eta1
    args = 'c eta2'
    f_name = F
  [../]
  [./ACInterface1]
    type = ACInterface
    variable = eta1
    kappa_name = kappa_eta
  [../]
  [./lagrange1]
    type = SwitchingFunctionConstraintEta
    variable = eta1
    h_name   = h1
    lambda = lambda
  [../]

  [./deta2dt]
    type = TimeDerivative
    variable = eta2
  [../]
  [./ACBulk2]
    type = AllenCahn
    variable = eta2
    args = 'c eta1'
    f_name = F
  [../]
  [./ACInterface2]
    type = ACInterface
    variable = eta2
    kappa_name = kappa_eta
  [../]
  [./lagrange2]
    type = SwitchingFunctionConstraintEta
    variable = eta2
    h_name   = h2
    lambda = lambda
  [../]

  [./lagrange]
    type = SwitchingFunctionConstraintLagrange
    variable = lambda
    etas    = 'eta1 eta2'
    h_names = 'h1   h2'
    epsilon = 0
  [../]

  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    args = 'eta1 eta2'
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time1]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'L kappa_eta'
    prop_values = '1 1        '
  [../]
  [./consts2]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1 1'
  [../]

  [./switching1]
    type = SwitchingFunctionMaterial
    function_name = h1
    eta = eta1
    h_order = SIMPLE
    outputs = exodus
  [../]
  [./switching2]
    type = SwitchingFunctionMaterial
    function_name = h2
    eta = eta2
    h_order = SIMPLE
    outputs = exodus
  [../]

  [./barrier]
    type = MultiBarrierFunctionMaterial
    etas = 'eta1 eta2'
  [../]

  [./free_energy_A]
    type = DerivativeParsedMaterial
    f_name = Fa
    args = 'c'
    function = '(c-0.1)^2'
    derivative_order = 2
    enable_jit = true
  [../]
  [./free_energy_B]
    type = DerivativeParsedMaterial
    f_name = Fb
    args = 'c'
    function = '(c-0.9)^2'
    derivative_order = 2
    enable_jit = true
  [../]

  [./free_energy]
    type = DerivativeMultiPhaseMaterial
    f_name = F
    fi_names = 'Fa   Fb'
    hi_names = 'h1   h2'
    etas     = 'eta1 eta2'
    args = 'c'
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'PJFNK'
  #petsc_options = '-snes_ksp -snes_ksp_ew'
  #petsc_options = '-ksp_monitor_snes_lg-snes_ksp_ew'
  #petsc_options_iname = '-ksp_gmres_restart'
  #petsc_options_value = '1000              '

  l_max_its = 15
  l_tol = 1.0e-6

  nl_max_its = 50
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 1
  dt = 0.01
  dtmin = 0.01
[]

[Debug]
  # show_var_residual_norms = true
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/multi/two_surface01.i

# Plasticit models:
# SimpleTester with a = 0 and b = 1 and strength = 1
# SimpleTester with a = 1 and b = 1 and strength = 2
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 1.5E-6m in the z directions.
# stress_zz = 1.5
#
# Then only the first SimpleTester should activate, and the final stress
# should have have only nonzero component stress_zz = 1

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.5E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
[]

[UserObjects]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 2
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = two_surface01
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/postprocessors/element_time_derivative/el_time_deriv_1d_test.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -5
  xmax = 5
  ymin = -1
  nx = 5
  elem_type = EDGE
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    value = t*x+1
  [../]
[]

[Kernels]
  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
  [./diffusion]
    type = Diffusion
    variable = u
  [../]
  [./timeDer]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./all]
    type = DirichletBC
    variable = u
    boundary = '0 1'
    value = 0
  [../]
[]

[Postprocessors]
  [./elementAvgTimeDerivative]
    type = ElementAverageTimeDerivative
    variable = u
  [../]
  [./elementAvgValue]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  scheme = implicit-euler

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_el_time_deriv_1d
  csv = true
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer/errors/sub_wrong_control.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = RealFunctionControl
    function = '1'
    parameter = 'BCs/left/value'
  []
[]

[Outputs]
  exodus = true
[]

test/tests/functions/image_function/image_mesh_3d.i

[Mesh]
  type = ImageMesh
  dim = 3
  file_base = stack/test
  file_suffix = png
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    # ImageFunction gets its file range parameters from ImageMesh,
    # when it is present.  This prevents duplicating information in
    # input files.
    type = ImageFunction
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[../]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/restart_multilevel/subsub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 10
[]

[Functions]
  [./u_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./fn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = u_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_postprocessor_to_scalar/master2_wrong_positions.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_sub_app]
    order = THIRD
    family = SCALAR
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.01
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./pp_sub]
    app_type = MooseTestApp
    positions = '0.5 0.5 0'
    execute_on = timestep_end
    type = TransientMultiApp
    input_files = sub2.i
  [../]
[]

[Transfers]
  [./pp_transfer]
    type = MultiAppPostprocessorToAuxScalarTransfer
    direction = from_multiapp
    multi_app = pp_sub
    from_postprocessor = point_value
    to_aux_scalar = from_sub_app
  [../]
[]

modules/phase_field/test/tests/initial_conditions/RndBoundingBoxIC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 8
  xmax = 50
  ymax = 25
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./InitialCondition]
    type = RndBoundingBoxIC
    x1 = 15.0
    x2 = 35.0
    y1 = 0.0
    y2 = 25.0
    mx_invalue = 1.0
    mn_invalue = 0.9
    mx_outvalue = -0.7
    mn_outvalue = -0.8
    variable = c
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 15
  nl_max_its = 10

  start_time = 0.0
  num_steps = 4
  dt = 5.0
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/hcs02.i

# apply a half-cubic heat sink flux
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./temp]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = temp
    number_fluid_phases = 0
    number_fluid_components = 0
  [../]
[]

[ICs]
  [./temp]
    type = RandomIC
    variable = temp
    min = -1
    max = 0
  [../]
[]

[Kernels]
  [./dummy_temp]
    type = TimeDerivative
    variable = temp
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
[]

[BCs]
  [./flux_w]
    type = PorousFlowHalfCubicSink
    boundary = 'left'
    center = 0.1
    cutoff = -1.1
    max = 2.2
    variable = temp
    flux_function = 'x*y'
  [../]
  [./flux_g]
    type = PorousFlowHalfCubicSink
    boundary = 'top left front'
    center = 0.5
    cutoff = -1.1
    max = -2.2
    variable = temp
    flux_function = '-x*y'
  [../]
  [./flux_1]
    type = PorousFlowHalfCubicSink
    boundary = 'right'
    center = -0.1
    cutoff = -1.1
    max = 1.2
    variable = temp
    flux_function = '-1.1*x*y'
  [../]
  [./flux_2]
    type = PorousFlowHalfCubicSink
    boundary = 'bottom'
    center = 3.2
    cutoff = -1.1
    max = 1.2
    variable = temp
    flux_function = '0.5*x*y'
  [../]
[]


[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  file_base = hcs02
[]

modules/porous_flow/test/tests/jacobian/denergy01.i

# 0phase time derivative of energy-density
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./temp]
  [../]
[]

[ICs]
  [./temp]
    type = RandomIC
    variable = temp
    max = 1.0
    min = 0.0
  [../]
[]


[Kernels]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp'
    number_fluid_phases = 0
    number_fluid_components = 0
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.1
    density = 0.5
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

examples/ex06_transient/ex06.i

[Mesh]
  file = cyl-tet.e
[]

[Variables]
  [./diffused]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = diffused
  [../]

  # Include our time derivative here
  [./euler]
    type = ExampleTimeDerivative
    variable = diffused
    time_coefficient = 20.0
  [../]
[]

[BCs]
  [./bottom_diffused]
    type = DirichletBC
    variable = diffused
    boundary = 'bottom'
    value = 0
  [../]

  [./top_diffused]
    type = DirichletBC
    variable = diffused
    boundary = 'top'
    value = 1
  [../]
[]

# Transient (time-dependent) details for simulations go here:
[Executioner]
  type = Transient   # Here we use the Transient Executioner (instead of steady)
  solve_type = 'PJFNK'
  num_steps = 75 # Run for 75 time steps, solving the system each step.
  dt = 1 # each time step will have duration "1"
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/dynamics/wave_1D/wave_rayleigh_hht.i

# Wave propogation in 1D using HHT time integration in the presence of Rayleigh damping
#
# The test is for an 1D bar element of length 4m  fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the other end.
# alpha, beta and gamma are HHT  time integration parameters
# eta and zeta are mass dependent and stiffness dependent Rayleigh damping
# coefficients, respectively.
# The equation of motion in terms of matrices is:
#
# M*accel + (eta*M+zeta*K)*((1+alpha)*vel-alpha*vel_old)
# +(1+alpha)*K*disp-alpha*K*disp_old = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# The displacement at the first, second, third and fourth node at t = 0.1 are
# -7.787499960311491942e-02, 1.955566679096475483e-02 and -4.634888180231294501e-03, respectively.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
[]

[Kernels]
  [./DynamicTensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    alpha = -0.3
    zeta = 0.1
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.422
    gamma = 0.8
    eta=0.1
    alpha = -0.3
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.422
    gamma = 0.8
    eta=0.1
    alpha = -0.3
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.422
    gamma = 0.8
    eta = 0.1
    alpha = -0.3
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.8
    execute_on = timestep_end
  [../]
[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
    type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = bottom
    function = displacement_bc
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1'
  [../]

[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 6.0
  l_tol = 1e-12
  nl_rel_tol = 1e-12
  dt = 0.1
[]


[Functions]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp_1]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_2]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./disp_3]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./disp_4]
    type = NodalVariableValue
    nodeid = 14
    variable = disp_y
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/phase_field/test/tests/phase_field_kernels/ADSplitCahnHilliard.i

#
# Test the split parsed function free enery Cahn-Hilliard Bulk kernel
# The free energy used here has the same functional form as the SplitCHPoly kernel
# If everything works, the output of this test should replicate the output
# of marmot/tests/chpoly_test/CHPoly_Cu_Split_test.i (exodiff match)
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0
  xmax = 60
  ymin = 0
  ymax = 60
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0
      y1 = 0
      radius = 30.0
      invalue = 1.0
      outvalue = -0.5
      int_width = 30.0
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./c_res]
    type = ADSplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = ADSplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = ADCoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '100 40'
  [../]

  [./free_energy]
    type = ADMathFreeEnergy
    f_name = F
    c = 'c'
  [../]
[]

[Preconditioning]
  # active = ' '
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'
  num_steps = 2
  dt = 1
[]

[Outputs]
  exodus = true
  file_base = SplitCahnHilliard_out
[]

test/tests/materials/stateful_prop/stateful_prop_adaptivity_test.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
  uniform_refine = 2
  # This option is necessary if you have uniform refinement + stateful material properties + adaptivity
  skip_partitioning = true
  # stateful material properties + adaptivity are not yet compatible
  # with distributed meshes
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./prop1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = MatDiffusionTest
    variable = u
    prop_name = thermal_conductivity
    prop_state = old # Use the "Old" value to compute conductivity
  [../]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./prop1_output]
    type = MaterialRealAux
    variable = prop1
    property = thermal_conductivity
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0.0
  [../]
  [./top]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1.0
  [../]
[]

[Materials]
  [./stateful]
    type = StatefulTest
    prop_names = thermal_conductivity
    prop_values = 1.0
  [../]
[]

[Postprocessors]
  [./integral]
    type = ElementAverageValue
    variable = prop1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  l_max_its = 10
  start_time = 0.0
  num_steps = 4
  dt = .1
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  marker = box
  [./Markers]
    [./box]
      type = BoxMarker
      bottom_left = '0.2 0.2 0.2'
      top_right = '0.4 0.4 0.4'
      inside = refine
      outside = coarsen
    [../]
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/tosub_displaced_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0.48 0 0'
    input_files = tosub_displaced_sub.i
  [../]
[]

[Transfers]
  [./to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = from_master
    displaced_target_mesh = true
  [../]
  [./elemental_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = elemental_from_master
    displaced_target_mesh = true
  [../]
[]

test/tests/geomsearch/3d_moving_penetration/pl_test1.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test1.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test1_out
  exodus = true
[]

test/tests/postprocessors/nodal_extreme_value/nodal_max_pps_test.i

[Mesh]
  file = trapezoid.e
  uniform_refine = 1
  # This test will not work in parallel with DistributedMesh enabled
  # due to a bug in PeriodicBCs.
  parallel_type = replicated
[]

[Functions]
  active = '
    tr_x tr_y
    itr_x itr_y'

  [./tr_x]
    type = ParsedFunction
    value = -x*cos(pi/3)
  [../]

  [./tr_y]
    type = ParsedFunction
    value = x*sin(pi/3)
  [../]

  [./itr_x]
    type = ParsedFunction
    value = -x/cos(pi/3)
  [../]

  [./itr_y]
    type = ParsedFunction
    value = 0
  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff forcing dot'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
    x_center = 2
    y_center = -1
    x_spread = 0.25
    y_spread = 0.5
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  #active = ' '

  [./Periodic]
    [./x]
      primary = 1
      secondary = 4
      transform_func = 'tr_x tr_y'
      inv_transform_func = 'itr_x itr_y'
    [../]
  [../]
[]

[Postprocessors]
  [./max_nodal_pps]
    type = NodalMaxValue
    variable = u
    block = ANY_BLOCK_ID
  [../]

  [./max_node_id]
    type = NodalProxyMaxValue
    variable = u
    block = ANY_BLOCK_ID
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  num_steps = 6
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/xfem/test/tests/pressure_bc/edge_3d_pressure.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = false
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 9
  nz = 10
  xmin = -0.1
  xmax = 0.1
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
  elem_type = HEX8
[]

[UserObjects]
  [./square_planar_cut_uo]
    type = RectangleCutUserObject
    cut_data = '-0.2  0.0 -0.5
                -0.2  0.0  0.0
                 0.2  0.0  0.0
                 0.2  0.0 -0.5'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz'
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 2.0 4.0 6.0 8.0'
    y = '0 1000 0 1000 0'
  [../]
[]

[DiracKernels]
  [./p_x]
    type = XFEMPressure
    variable = disp_x
    component = 0
    function = pressure
  [../]
  [./p_y]
    type = XFEMPressure
    variable = disp_y
    component = 1
    function = pressure
  [../]
  [./p_z]
    type = XFEMPressure
    variable = disp_z
    component = 2
    function = pressure
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    boundary = 'bottom top'
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 'bottom top'
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = 'bottom top'
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  file_base = edge_3d_pressure_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/chemistry/except3.i

# Exception test.
# Incorrect number of mass-fractions

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 2
    number_aqueous_equilibrium = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1E2
  [../]
  [./eqm_k1]
    initial_condition = 1E-2
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'a b'
    num_reactions = 2
    equilibrium_constants = 'eqm_k0 eqm_k1'
    primary_activity_coefficients = '1 1'
    secondary_activity_coefficients = '1 1'
    reactions = '2 0
                 1 1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/combined/test/tests/hertz_contact/hertz_contact_rz.i

# Hertz Contact: Sphere on sphere

# Spheres have the same radius, Young's modulus, and Poisson's ratio.

# Define E:
# 1/E = (1-nu1^2)/E1 + (1-nu2^2)/E2
#
# Effective radius R:
# 1/R = 1/R1 + 1/R2
#
# F is the applied compressive load.
#
# Area of contact a::
# a^3 = 3FR/4E
#
# Depth of indentation d:
# d = a^2/R
#
#
# Let R1 = R2 = 2.  Then R = 1.
#
# Let nu1 = nu2 = 0.25, E1 = E2 = 1.40625e7.  Then E = 7.5e6.
#
# Let F = 10000.  Then a = 0.1, d = 0.01.
#

## Note: There is not a good way to check the result.  The standard approach is
## to map contact pressure as a function of radius, but we don't have the
## contact pressure available.  See the description on Wikipedia for details of
## analytic equations, and the Abaqus Benchmarks Manual, 1.1.11, for a plot of
## contact pressure vs. radius.

[Problem]
  coord_type = RZ
[]

[Mesh]#Comment
  file = hertz_contact_rz.e
  displacements = 'disp_x disp_y'
[] # Mesh

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 795.77471545947674 # 10000/pi/2^2
  [../]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.  1.    2.'
    y = '0. -0.01 -0.01'
  [../]
[] # Functions

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

[] # Variables

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydrostatic]
    order = CONSTANT
    family = MONOMIAL
  [../]

[] # AuxVariables

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[AuxKernels]

  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
  [../]
  [./hydrostatic]
    type = MaterialTensorAux
    tensor = stress
    variable = hydrostatic
    quantity = hydrostatic
  [../]

[] # AuxKernels

[BCs]

  [./base_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1000
    value = 0.0
  [../]

  [./symm_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./disp_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

[] # BCs

[Contact]
  [./dummy_name]
    master = 1000
    slave = 100
    disp_x = disp_x
    disp_y = disp_y
    penalty = 1e7
  [../]
[]

[Materials]

  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1.40625e7
    poissons_ratio = 0.25
  [../]
  [./stiffStuff2] # Rigid block
    type = Elastic
    block = 1000

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

[] # Materials

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'


  line_search = 'none'


  nl_abs_tol = 1e-7

  l_max_its = 200

  start_time = 0.0
  dt = 0.5
  end_time = 2.0
[] # Executioner

[Postprocessors]
  [./maxdisp]
    type = NodalVariableValue
    nodeid = 39 # 40-1 where 40 is the exodus node number of the top-left node
    variable = disp_y
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

modules/combined/test/tests/sliding_block/in_and_out/constraint/sm/frictional_04_penalty_sm.i

#  This is a benchmark test that checks constraint based frictional
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2 and a friction coefficient
#  of 0.4 is used.  The gold file is run on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm     lu    20    101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-3
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  # csv = true
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    friction_coefficient = 0.4
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform17.i

# Using CappedMohrCoulomb with compressive failure only
# A single element is incrementally compressed
# This causes the return direction to be along the hypersurface sigma_II = sigma_III
# and the resulting stresses are checked to lie on the expected yield surface

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-2*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-2*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-0.4*z*(t+2*t*t)'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 3
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 0.1
  type = Transient
[]


[Outputs]
  file_base = small_deform17
  csv = true
[]

modules/combined/test/tests/solid_mechanics/beam_pbp/beam_pbp.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = 1
  volumetric_locking_correction = false
[]

[Mesh]
  file = beam_pbp.e
[]

[Functions]
  [./press]
    type = ParsedFunction
    value = '100*t*x*z*z*z'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  []
[]

[BCs]
  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 10
    value = 0.0
  [../]

  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]

  [./Pressure]
    [./the_pressure]
      boundary = 2
      function = press
    [../]
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[] # Materials

[Preconditioning]
  [./PBP]
    type = PBP
    solve_order = 'disp_x disp_y disp_z'
    preconditioner = 'amg amg amg'
    off_diag_row = 'disp_y disp_z disp_z'
    off_diag_column = 'disp_x disp_x disp_y'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = JFNK

  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 2
[] # Executioner

[Postprocessors]
  [./nonlnrits]
    type = NumNonlinearIterations
  [../]
[] # Postprocessors

[Outputs]
  exodus = true
[] # Outputs

test/tests/controls/error/multiple_parameters_found.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./diff2]
    type = CoefDiffusion
    variable = u
    coef = 0.2
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

[Functions]
  [./func_coef]
    type = ParsedFunction
    value = '2*t + 0.1'
  [../]
[]

[Controls]
  [./func_control]
    type = TestControl
    test_type = 'real'
    parameter = '*/*/coef'
  [../]
[]

test/tests/test_harness/good.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  perf_graph = true
[]

test/tests/time_integrators/explicit-euler/ee-1d-linear.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -1
  xmax = 1
  nx = 200
  elem_type = EDGE2
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = x
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*x
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
    lumping = true
    implicit = true
  [../]

  [./diff]
    type = Diffusion
    variable = u
    implicit = false
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
    implicit = false
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = '0 1'
    function = exact_fn
    implicit = true
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'explicit-euler'
  solve_type = 'LINEAR'

  start_time = 0.0
  num_steps = 20
  dt = 0.00005
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/combined/test/tests/contact_verification/overclosure_removal/overclosure.i

# ---------------------------------------------------------------------------------------------------------
# REGRESSION TEST FOR OVERCLOSURE REMOVAL
# =======================================
# THIS TEST DEMONSTRATES THAT THE CODE IS CAPABLE OF REMOVING A SIZEABLE OVERCLOSURE IN A SINGLE TIME-STEP
# --------------------------------------------------------------------------------------------------------


[Mesh]
  file = oc_mesh.e
[]

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./penetration]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
    use_finite_deform_jacobian = true
  [../]
[]

[AuxKernels]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side1_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 5
    value = 0.0
  [../]
  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1001    #nodeset 1001 top central node
    value = 0.0
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    decomposition_method = EigenSolution
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]

  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e5
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    decomposition_method = EigenSolution
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  dtmin = 1.0
  l_tol = 1e-3

[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 4
    disp_y = disp_y
    disp_x = disp_x
    master = 3
    system = constraint
    model = frictionless
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/solid_mechanics/test/tests/predictor/predictor_skip_test.i

# The purpose of this test is to test the simple predictor.  This is a very
# small, monotonically loaded block of material.  If things are working right,
# the predictor should come very close to exactly nailing the solution on steps
# after the first step.  Because of nonlinear geometry, the predictor is slightly
# off in general, but that is mitigated by setting this up so that the elements
# undergo no rotations.

# This test checks to see that the predictor is skipped in the last step.

[Mesh]
  displacements = 'disp_x disp_y disp_z'
  file = predictor_test.e
[] # Mesh

[Functions]
  [./ramp1]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 0.2
  [../]
[] # Functions

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

[] # Variables

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]

  [./ss1_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./ss1_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
  [./ss1_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]

  [./ss2_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = ramp1
  [../]
  [./ss2_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = ramp1
  [../]
  [./ss2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

[] # BCs

[Materials]

  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
[] # Materials

[Executioner]

  type = Transient


  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'




# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-8

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-9

#  l_max_its = 20

  start_time = 0.0
  dt = 0.5
  num_steps = 2
  end_time = 1.0

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
    skip_times = '1.0'
  [../]
[] # Executioner

[Postprocessors]
  [./initial_residual]
    type = Residual
    residual_type = initial_after_preset
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[] # Outputs

modules/tensor_mechanics/test/tests/ad_viscoplasticity_stress_update/gtn_single.i

# This test provides an example of an individual GTN viscoplasticity model

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmax = 0.002
  ymax = 0.002
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  add_variables = true
  base_name = 'total'
  generate_output = 'strain_xx strain_yy strain_xy hydrostatic_stress vonmises_stress'
  use_automatic_differentiation = true
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0 0.1'
    y = '0 1e-5'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.3
    base_name = 'total'
  [../]
  [./stress]
    type = ADComputeMultiplePorousInelasticStress
    inelastic_models = gtn
    initial_porosity = 0.1
    outputs = all
    base_name = 'total'
  [../]

  [./gtn]
    type = ADViscoplasticityStressUpdate
    total_strain_base_name = 'total'
    coefficient = 'coef'
    power = 3
    viscoplasticity_model = GTN
    outputs = all
    relative_tolerance = 1e-11
  [../]
  [./coef]
    type = ParsedMaterial
    f_name = coef
    # Example of creep power law
    function = '1e-18 * exp(-4e4 / 1.987 / 1200)'
  [../]
[]

[BCs]
  [./no_disp_x]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_disp_y]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./pull_disp_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pull
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 0.01
  end_time = 0.12
[]

[Postprocessors]
  [./disp_x]
    type = SideAverageValue
    variable = disp_x
    boundary = right
  [../]
  [./disp_y]
    type = SideAverageValue
    variable = disp_y
    boundary = top
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = total_hydrostatic_stress
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = total_vonmises_stress
  [../]
  [./dt]
    type = TimestepSize
  [../]
  [./num_lin]
    type = NumLinearIterations
    outputs = console
  [../]
  [./num_nonlin]
    type = NumNonlinearIterations
    outputs = console
  [../]
  [./eff_creep_strain]
    type = ElementAverageValue
    variable = effective_viscoplasticity
  [../]
  [./porosity]
    type = ElementAverageValue
    variable = porosity
  [../]
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_4/ring4_template2.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring4_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform2.i

# Plastic deformation, tensile failure
# With Lame lambda=0 and Lame mu=1, applying the following
# deformation to the zmax surface of a unit cube:
# disp_z = t
# should yield trial stress:
# stress_zz = 2*t
# Use tensile strength = 1, we should return to stress_zz = 1
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 0
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = t
  [../]
[]

[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 30
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 40
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 2
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform2
  csv = true
[]

tutorials/darcy_thermo_mech/step09_mechanics/problems/step9.i

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  ny = 200
  nx = 10
  ymax = 0.304 # Length of test chamber
  xmax = 0.0257 # Test chamber radius
[]

[MeshModifiers]
  [bottom]
    type = SubdomainBoundingBox
    location = inside
    bottom_left = '0 0 0'
    top_right = '0.01285 0.304 0'
    block_id = 1
  []
[]

[Variables]
  [pressure]
  []
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[AuxVariables]
  [velocity]
    order = CONSTANT
    family = MONOMIAL_VEC
  []
[]

[Modules/TensorMechanics/Master]
  [all]
    # This block adds all of the proper Kernels, strain calculators, and Variables
    # for TensorMechanics in the correct coordinate system (autodetected)
    add_variables = true
    strain = FINITE
    eigenstrain_names = eigenstrain
    use_automatic_differentiation = true
    generate_output = 'vonmises_stress elastic_strain_xx elastic_strain_yy strain_xx strain_yy'
  []
[]

[Kernels]
  [darcy_pressure]
    type = DarcyPressure
    variable = pressure
  []
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
  [heat_convection]
    type = DarcyAdvection
    variable = temperature
    pressure = pressure
  []
[]

[AuxKernels]
  [velocity]
    type = DarcyVelocity
    variable = velocity
    execute_on = timestep_end
    pressure = pressure
  []
[]

[BCs]
  [inlet]
    type = DirichletBC
    variable = pressure
    boundary = bottom
    value = 4000 # (Pa) From Figure 2 from paper.  First data point for 1mm spheres.
  []
  [outlet]
    type = DirichletBC
    variable = pressure
    boundary = top
    value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
  []
  [inlet_temperature]
    type = FunctionDirichletBC
    variable = temperature
    boundary = bottom
    function = 'if(t<0,350+50*t,350)'
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = top
  []
  [hold_inlet]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0
  []
  [hold_center]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  []
  [hold_outside]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0
  []
[]

[Materials]
  viscosity_file = data/water_viscosity.csv
  density_file = data/water_density.csv
  thermal_conductivity_file = data/water_thermal_conductivity.csv
  specific_heat_file = data/water_specific_heat.csv
  thermal_expansion_file = data/water_thermal_expansion.csv

  [column_top]
    type = PackedColumn
    block = 0
    temperature = temperature
    radius = 1.15
    fluid_viscosity_file = ${viscosity_file}
    fluid_density_file = ${density_file}
    fluid_thermal_conductivity_file = ${thermal_conductivity_file}
    fluid_specific_heat_file = ${specific_heat_file}
    fluid_thermal_expansion_file = ${thermal_expansion_file}
  []
  [column_bottom]
    type = PackedColumn
    block = 1
    temperature = temperature
    radius = 1
    fluid_viscosity_file = ${viscosity_file}
    fluid_density_file = ${density_file}
    fluid_thermal_conductivity_file = ${thermal_conductivity_file}
    fluid_specific_heat_file = ${specific_heat_file}
    fluid_thermal_expansion_file = ${thermal_expansion_file}
  []

  [elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 200e9 # (Pa) from wikipedia
    poissons_ratio = .3 # from wikipedia

  []
  [elastic_stress]
    type = ADComputeFiniteStrainElasticStress
  []
  [thermal_strain]
    type = ADComputeThermalExpansionEigenstrain
    stress_free_temperature = 300
    eigenstrain_name = eigenstrain
    temperature = temperature
    thermal_expansion_coeff = 1e-5 # TM modules doesn't support material property, but it will
  []
[]

[Postprocessors]
  [average_temperature]
    type = ElementAverageValue
    variable = temperature
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Executioner]
  type = Transient
  start_time = -1
  end_time = 200
  steady_state_tolerance = 1e-7
  steady_state_detection = true
  dt = 0.25
  solve_type = PJFNK
  automatic_scaling = true
  compute_scaling_once = false
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
  #petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  #petsc_options_value = 'hypre boomeramg 500'
  line_search = none
  [TimeStepper]
    type = FunctionDT
    function = 'if(t<0,0.1,0.25)'
  []
[]

[Outputs]
  [out]
    type = Exodus
    elemental_as_nodal = true
  []
[]

test/tests/kernels/coupled_time_derivative/vector_coupled_time_derivative_test.i

###########################################################
# This is a simple test of the VectorCoupledTimeDerivative kernel.
# The expected solution for the vector variable v is
# v_x(x) = 1/2 * (x^2 + x)
# v_y(x) = 1/2 * (x^2 + x)
###########################################################

[Mesh]
  type = GeneratedMesh
  nx = 5
  ny = 5
  dim = 2
[]

[Variables]
  [./u]
    family = LAGRANGE_VEC
  [../]
  [./v]
    family = LAGRANGE_VEC
  [../]
[]

[Kernels]
  [./time_u]
    type = VectorTimeDerivative
    variable = u
  [../]
  [./fn_u]
    type = VectorBodyForce
    variable = u
    function_x = 1
    function_y = 1
  [../]
  [./time_v]
    type = VectorCoupledTimeDerivative
    variable = v
    v = u
  [../]
  [./diff_v]
    type = VectorDiffusion
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = VectorDirichletBC
    variable = v
    boundary = 'left'
    values = '0 0 0'
  [../]
  [./right]
    type = VectorDirichletBC
    variable = v
    boundary = 'right'
    values = '1 1 0'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'NEWTON'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/simple_contact/sm/simple_contact_test_sm.i

# Note: Run merged.i to generate a solution to compare to that doesn't use contact.

[Mesh]
  file = contact.e
  # PETSc < 3.5.0 requires the iteration patch_update_strategy to
  # avoid PenetrationLocator warnings, which are currently treated as
  # errors by the TestHarness.
  patch_update_strategy = 'iteration'
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e5
    formulation = kinematic
    system = constraint
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]

  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    formulation = Nonlinear3D
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    formulation = Nonlinear3D
    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'

  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/porous_flow/test/tests/jacobian/chem09.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Dissolution with temperature, with one primary variable = 0 and stoichiometry = 1
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.0
  [../]
  [./b]
    initial_condition = 0.2
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1.234
  [../]
  [./ini_sec_conc]
    initial_condition = 0.222
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1E10
    stoichiometry = 1
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 2.2E10
    stoichiometry = 3
  [../]
  [./temp]
    type = Diffusion
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b temp'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '0.5 0.8'
    reactions = '1 3'
    specific_reactive_surface_area = -44.4E-2
    kinetic_rate_constant = 0.678
    activation_energy = 4.4
    molar_volume = 3.3
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = 1
    eta_exponent = 1.2
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_sec_conc
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

test/tests/outputs/csv/csv_transient.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux0]
    order = SECOND
    family = SCALAR
  [../]
  [./aux1]
    family = SCALAR
    initial_condition = 5
  [../]
  [./aux2]
    family = SCALAR
    initial_condition = 10
  [../]
  [./aux_sum]
    family = SCALAR
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxScalarKernels]
  [./sum_nodal_aux]
    type = SumNodalValuesAux
    variable = aux_sum
    sum_var = u
    nodes = '1 2 3 4 5'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./mid_point]
    type = PointValue
    variable = u
    point = '0.5 0.5 0'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  verbose = true
[]

[Outputs]
  csv = true
[]

test/tests/multiapps/restart_subapp_ic/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 10
[]

[Functions]
  [./u_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./fn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = u_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/user_objects/uo4.i

# Seff 2-phase User objects give the correct value
#
# If you want to add another test for another UserObject
# then add the UserObject, add a Function defining the expected result,
# add an AuxVariable and AuxKernel that will record the UserObjects value
# and finally add a NodalL2Error that compares this with the Function
#
# Here pressure is x where x is between -5 and 5

[UserObjects]
  [./Seff2waterVG]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 0.3
  [../]
  [./Seff2gasVG]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 0.3
  [../]

  [./Seff2waterVGshifted]
    type = RichardsSeff2waterVGshifted
    m = 0.8
    al = 0.3
    shift = 2
  [../]
  [./Seff2gasVGshifted]
    type = RichardsSeff2gasVGshifted
    m = 0.8
    al = 0.3
    shift = 2
  [../]

  # following are unimportant in this test
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E6
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.10101
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1
  [../]
[]

[Functions]
  [./initial_pwater]
    type = ParsedFunction
    value = x
  [../]
  [./initial_pgas]
    type = ParsedFunction
    value = 5.0
  [../]

  [./answer_Seff2waterVG]
    type = ParsedFunction
    value = (1+max((-(x-5))*al,0)^(1/(1-m)))^(-m)
    vars = 'al m'
    vals = '0.3 0.8'
  [../]
  [./answer_dSeff2waterVG]
    type = GradParsedFunction
    direction = '1E-5 0 0'
    value = (1+max((-(x-5))*al,0)^(1/(1-m)))^(-m)
    vars = 'al m'
    vals = '0.3 0.8'
  [../]
  [./answer_d2Seff2waterVG]
    type = Grad2ParsedFunction
    direction = '1E-4 0 0'
    value = (1+max((-(x-5))*al,0)^(1/(1-m)))^(-m)
    vars = 'al m'
    vals = '0.3 0.8'
  [../]

  [./answer_Seff2gasVG]
    type = ParsedFunction
    value = 1-(1+max((-(x-5))*al,0)^(1/(1-m)))^(-m)
    vars = 'al m'
    vals = '0.3 0.8'
  [../]
  [./answer_dSeff2gasVG]
    type = GradParsedFunction
    direction = '1E-5 0 0'
    value = 1-(1+max((-(x-5))*al,0)^(1/(1-m)))^(-m)
    vars = 'al m'
    vals = '0.3 0.8'
  [../]
  [./answer_d2Seff2gasVG]
    type = Grad2ParsedFunction
    direction = '1E-4 0 0'
    value = 1-(1+max((-(x-5))*al,0)^(1/(1-m)))^(-m)
    vars = 'al m'
    vals = '0.3 0.8'
  [../]

  [./answer_Seff2waterVGshifted]
    type = ParsedFunction
    value = ((1+max((-(x-5-shift))*al,0)^(1/(1-m)))^(-m))/((1+max((-(-shift))*al,0)^(1/(1-m)))^(-m))
    vars = 'al m shift'
    vals = '0.3 0.8 2'
  [../]
  [./answer_dSeff2waterVGshifted]
    type = GradParsedFunction
    direction = '1E-5 0 0'
    value = ((1+max((-(x-5-shift))*al,0)^(1/(1-m)))^(-m))/((1+max((-(-shift))*al,0)^(1/(1-m)))^(-m))
    vars = 'al m shift'
    vals = '0.3 0.8 2'
  [../]
  [./answer_d2Seff2waterVGshifted]
    type = Grad2ParsedFunction
    direction = '1E-4 0 0'
    value = ((1+max((-(x-5-shift))*al,0)^(1/(1-m)))^(-m))/((1+max((-(-shift))*al,0)^(1/(1-m)))^(-m))
    vars = 'al m shift'
    vals = '0.3 0.8 2'
  [../]

  [./answer_Seff2gasVGshifted]
    type = ParsedFunction
    value = 1-((1+max((-(x-5-shift))*al,0)^(1/(1-m)))^(-m))/((1+max((-(-shift))*al,0)^(1/(1-m)))^(-m))
    vars = 'al m shift'
    vals = '0.3 0.8 2'
  [../]
  [./answer_dSeff2gasVGshifted]
    type = GradParsedFunction
    direction = '1E-5 0 0'
    value = 1-((1+max((-(x-5-shift))*al,0)^(1/(1-m)))^(-m))/((1+max((-(-shift))*al,0)^(1/(1-m)))^(-m))
    vars = 'al m shift'
    vals = '0.3 0.8 2'
  [../]
  [./answer_d2Seff2gasVGshifted]
    type = Grad2ParsedFunction
    direction = '1E-4 0 0'
    value = 1-((1+max((-(x-5-shift))*al,0)^(1/(1-m)))^(-m))/((1+max((-(-shift))*al,0)^(1/(1-m)))^(-m))
    vars = 'al m shift'
    vals = '0.3 0.8 2'
  [../]
[]

[AuxVariables]
  [./Seff2waterVG_Aux]
  [../]
  [./dSeff2waterVG_Aux]
  [../]
  [./d2Seff2waterVG_Aux]
  [../]
  [./Seff2gasVG_Aux]
  [../]
  [./dSeff2gasVG_Aux]
  [../]
  [./d2Seff2gasVG_Aux]
  [../]

  [./Seff2waterVGshifted_Aux]
  [../]
  [./dSeff2waterVGshifted_Aux]
  [../]
  [./d2Seff2waterVGshifted_Aux]
  [../]
  [./Seff2gasVGshifted_Aux]
  [../]
  [./dSeff2gasVGshifted_Aux]
  [../]
  [./d2Seff2gasVGshifted_Aux]
  [../]

  [./check_Aux]
  [../]
[]

[AuxKernels]
  [./Seff2waterVG_AuxK]
    type = RichardsSeffAux
    variable = Seff2waterVG_Aux
    seff_UO = Seff2waterVG
    pressure_vars = 'pwater pgas'
  [../]
  [./dSeff2waterVG_AuxK]
    type = RichardsSeffPrimeAux
    variable = dSeff2waterVG_Aux
    seff_UO = Seff2waterVG
    pressure_vars = 'pwater pgas'
    wrtnum = 0
  [../]
  [./d2Seff2waterVG_AuxK]
    type = RichardsSeffPrimePrimeAux
    variable = d2Seff2waterVG_Aux
    seff_UO = Seff2waterVG
    pressure_vars = 'pwater pgas'
    wrtnum1 = 0
    wrtnum2 = 0
  [../]
  [./Seff2gasVG_AuxK]
    type = RichardsSeffAux
    variable = Seff2gasVG_Aux
    seff_UO = Seff2gasVG
    pressure_vars = 'pwater pgas'
  [../]
  [./dSeff2gasVG_AuxK]
    type = RichardsSeffPrimeAux
    variable = dSeff2gasVG_Aux
    seff_UO = Seff2gasVG
    pressure_vars = 'pwater pgas'
    wrtnum = 0
  [../]
  [./d2Seff2gasVG_AuxK]
    type = RichardsSeffPrimePrimeAux
    variable = d2Seff2gasVG_Aux
    seff_UO = Seff2gasVG
    pressure_vars = 'pwater pgas'
    wrtnum1 = 0
    wrtnum2 = 0
  [../]

  [./Seff2waterVGshifted_AuxK]
    type = RichardsSeffAux
    variable = Seff2waterVGshifted_Aux
    seff_UO = Seff2waterVGshifted
    pressure_vars = 'pwater pgas'
  [../]
  [./dSeff2waterVGshifted_AuxK]
    type = RichardsSeffPrimeAux
    variable = dSeff2waterVGshifted_Aux
    seff_UO = Seff2waterVGshifted
    pressure_vars = 'pwater pgas'
    wrtnum = 0
  [../]
  [./d2Seff2waterVGshifted_AuxK]
    type = RichardsSeffPrimePrimeAux
    variable = d2Seff2waterVGshifted_Aux
    seff_UO = Seff2waterVGshifted
    pressure_vars = 'pwater pgas'
    wrtnum1 = 0
    wrtnum2 = 0
  [../]
  [./Seff2gasVGshifted_AuxK]
    type = RichardsSeffAux
    variable = Seff2gasVGshifted_Aux
    seff_UO = Seff2gasVGshifted
    pressure_vars = 'pwater pgas'
  [../]
  [./dSeff2gasVGshifted_AuxK]
    type = RichardsSeffPrimeAux
    variable = dSeff2gasVGshifted_Aux
    seff_UO = Seff2gasVGshifted
    pressure_vars = 'pwater pgas'
    wrtnum = 0
  [../]
  [./d2Seff2gasVGshifted_AuxK]
    type = RichardsSeffPrimePrimeAux
    variable = d2Seff2gasVGshifted_Aux
    seff_UO = Seff2gasVGshifted
    pressure_vars = 'pwater pgas'
    wrtnum1 = 0
    wrtnum2 = 0
  [../]

  [./check_AuxK]
    type = FunctionAux
    variable = check_Aux
    function = answer_d2Seff2waterVGshifted
  [../]
[]

[Postprocessors]
  [./cf_Seff2waterVG]
    type = NodalL2Error
    function = answer_Seff2waterVG
    variable = Seff2waterVG_Aux
  [../]
  [./cf_dSeff2waterVG]
    type = NodalL2Error
    function = answer_dSeff2waterVG
    variable = dSeff2waterVG_Aux
  [../]
  [./cf_d2Seff2waterVG]
    type = NodalL2Error
    function = answer_d2Seff2waterVG
    variable = d2Seff2waterVG_Aux
  [../]

  [./cf_Seff2gasVG]
    type = NodalL2Error
    function = answer_Seff2gasVG
    variable = Seff2gasVG_Aux
  [../]
  [./cf_dSeff2gasVG]
    type = NodalL2Error
    function = answer_dSeff2gasVG
    variable = dSeff2gasVG_Aux
  [../]
  [./cf_d2Seff2gasVG]
    type = NodalL2Error
    function = answer_d2Seff2gasVG
    variable = d2Seff2gasVG_Aux
  [../]

  [./cf_Seff2waterVGshifted]
    type = NodalL2Error
    function = answer_Seff2waterVGshifted
    variable = Seff2waterVGshifted_Aux
  [../]
  [./cf_dSeff2waterVGshifted]
    type = NodalL2Error
    function = answer_dSeff2waterVGshifted
    variable = dSeff2waterVGshifted_Aux
  [../]
  [./cf_d2Seff2waterVGshifted]
    type = NodalL2Error
    function = answer_d2Seff2waterVGshifted
    variable = d2Seff2waterVGshifted_Aux
  [../]

  [./cf_Seff2gasVGshifted]
    type = NodalL2Error
    function = answer_Seff2gasVGshifted
    variable = Seff2gasVGshifted_Aux
  [../]
  [./cf_dSeff2gasVGshifted]
    type = NodalL2Error
    function = answer_dSeff2gasVGshifted
    variable = dSeff2gasVGshifted_Aux
  [../]
  [./cf_d2Seff2gasVGshifted]
    type = NodalL2Error
    function = answer_d2Seff2gasVGshifted
    variable = d2Seff2gasVGshifted_Aux
  [../]

[]



#############################################################################
#
# Following is largely unimportant as we are not running an actual similation
#
#############################################################################
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = -5
  xmax = 5
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pwater
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pgas
    [../]
  [../]
[]

[Kernels]
  active = 'watert gast'
  [./watert]
    type = RichardsMassChange
    richardsVarNames_UO = PPNames
    variable = pwater
  [../]
  [./gast]
    type = RichardsMassChange
    richardsVarNames_UO = PPNames
    variable = pgas
  [../]
[]

[Materials]
  [./unimportant_material]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-20 0 0  0 1E-20 0  0 0 1E-20'
    richardsVarNames_UO = PPNames
    density_UO = 'DensityConstBulk DensityConstBulk'
    relperm_UO = 'RelPermPower RelPermPower'
    sat_UO = 'Saturation Saturation'
    seff_UO = 'Seff2waterVG Seff2gasVG'
    SUPG_UO = 'SUPGstandard SUPGstandard'
    viscosity = '1E-3 1E-5'
    gravity = '0 0 -10'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  [./does_nothing]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E50 1E50 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
  dt = 1E-100
[]

[Outputs]
  execute_on = 'timestep_end'
  active = 'csv'
  file_base = uo4
  [./csv]
    type = CSV
    [../]
  [./exodus]
    type = Exodus
  [../]
[]

test/tests/postprocessors/nodal_var_value/nodal_aux_var_value.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  elem_type = QUAD4
  # This test can only be run with renumering disabled, so the
  # NodalVariableValue postprocessor's node id is well-defined.
  allow_renumbering = false
[]

[Variables]
  active = 'v'

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  active = 'v1'

  [./v1]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[Functions]
  active = 'left_bc'

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = 'time_v diff_v'

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[AuxKernels]
  active = 'ak1'

  [./ak1]
    type = CoupledAux
    variable = v1
    coupled = v
    value = 1
    operator = '+'
  [../]
[]

[BCs]
  active = 'left_v right_v'

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '1'
    value = 1
  [../]
[]

[Postprocessors]
  active = 'node4v node4v1'

  [./node4v]
    type = NodalVariableValue
    variable = v
    nodeid = 3
  [../]

  [./node4v1]
    type = NodalVariableValue
    variable = v1
    nodeid = 3
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_nodal_aux_var_value
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_pressure/pressure_test.i

#
# Pressure Test
#
# This test is designed to compute pressure loads on three faces of a unit cube.
#
# The mesh is composed of one block with a single element.  Symmetry bcs are
# applied to the faces opposite the pressures.  Poisson's ratio is zero,
# which makes it trivial to check displacements.
#


[Mesh]
  type = FileMesh
  file = pressure_test.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1.0
  [../]
  [./zeroRamp]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 0. 1.'
    scale_factor = 1.0
  [../]
  [./rampUnramp]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 0.'
    scale_factor = 10.0
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_automatic_differentiation = true
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 5
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 1
      function = rampConstant
      displacements = 'disp_x disp_y disp_z'
      use_automatic_differentiation = true
    [../]
    [./Side2]
      boundary = 2
      function = zeroRamp
      displacements = 'disp_x disp_y disp_z'
      use_automatic_differentiation = true
      factor = 2.0
    [../]
    [./Side3]
      boundary = 3
      function = rampUnramp
      displacements = 'disp_x disp_y disp_z'
      use_automatic_differentiation = true
    [../]
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 1
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5e6'
  [../]
  [./strain]
    type = ADComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
    block = 1
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
    block = 1
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  nl_abs_tol = 1e-10
  l_max_its = 20
  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/peridynamics/test/tests/jacobian_check/generalized_planestrain_smallstrain_NOSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  scalar_out_of_plane_strain = scalar_strain_zz
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[Modules/Peridynamics/Mechanics]
  [./Master]
    [./all]
      formulation = NONORDINARY_STATE
    [../]
  [../]
  [./GeneralizedPlaneStrain]
    [./all]
      formulation = NONORDINARY_STATE
    [../]
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./strain]
    type = ComputePlaneSmallStrainNOSPD
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

test/tests/executioners/executioner/steady_state_check_test.i

#
# Run transient simulation into steady state
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD9
[]

[Variables]
  active = 'u'

  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
#    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
    value = -4
  [../]

  [./exact_fn]
    type = ParsedFunction
#    value = t*t*t*((x*x)+(y*y))
    value = ((x*x)+(y*y))
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'

  solve_type = 'PJFNK'

  nl_abs_tol = 1e-14

  start_time = 0.0
  num_steps = 12
  dt = 1

  steady_state_detection = true
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_ss_check
  exodus = true
[]

test/tests/multiapps/reset/multilevel_sub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/richards/test/tests/gravity_head_2/gh_fu_06.i

# unsaturated = true
# gravity = true
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-13 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh_fu_06
  csv = true
[]

tutorials/darcy_thermo_mech/step08_postprocessors/problems/step8.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 3
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
  uniform_refine = 2
[]

[Variables]
  [pressure]
  []
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[AuxVariables]
  [velocity]
    order = CONSTANT
    family = MONOMIAL_VEC
  []
[]

[Kernels]
  [darcy_pressure]
    type = DarcyPressure
    variable = pressure
  []
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
  [heat_convection]
    type = DarcyAdvection
    variable = temperature
    pressure = pressure
  []
[]

[AuxKernels]
  [velocity]
    type = DarcyVelocity
    variable = velocity
    execute_on = timestep_end
    pressure = pressure
  []
[]

[BCs]
  [inlet]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 4000 # (Pa) From Figure 2 from paper.  First data point for 1mm spheres.
  []
  [outlet]
    type = DirichletBC
    variable = pressure
    boundary = right
    value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
  []
  [inlet_temperature]
    type = FunctionDirichletBC
    variable = temperature
    boundary = left
    function = 'if(t<0,350+50*t,350)'
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = right
  []
[]

[Materials]
  [column]
    type = PackedColumn
    radius = 1
    temperature = temperature
    porosity = '0.25952 + 0.7*y/0.0257'
  []
[]

[Postprocessors]
  [average_temperature]
    type = ElementAverageValue
    variable = temperature
  []
  [outlet_heat_flux]
    type = SideFluxIntegral
    variable = temperature
    boundary = right
    diffusivity = thermal_conductivity
  []
[]

[VectorPostprocessors]
  [temperature_sample]
    type = LineValueSampler
    num_points = 500
    start_point = '0.1 0      0'
    end_point =   '0.1 0.0257 0'
    variable = temperature
    sort_by = y
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  automatic_scaling = true

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  end_time = 100
  dt = 0.25
  start_time = -1

  steady_state_tolerance = 1e-5
  steady_state_detection = true

  [TimeStepper]
    type = FunctionDT
    function = 'if(t<0,0.1,0.25)'
  []
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/poro/vol_expansion_action.i

# This is identical to vol_expansion.i, but uses the PoroMechanics action
#
# Apply an increasing porepressure, with zero mechanical forces,
# and observe the corresponding volumetric expansion
#
# P = t
# With the Biot coefficient being 2.0, the effective stresses should be
# stress_xx = stress_yy = stress_zz = 2t
# With bulk modulus = 1 then should have
# vol_strain = strain_xx + strain_yy + strain_zz = 2t.
# I use a single element lying 0<=x<=1, 0<=y<=1 and 0<=z<=1, and
# fix the left, bottom and back boundaries appropriately,
# so at the point x=y=z=1, the displacements should be
# disp_x = disp_y = disp_z = 2t/3 (small strain physics is used)
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./p]
  [../]
[]

[BCs]
  [./p]
    type = FunctionDirichletBC
    boundary = 'bottom top'
    variable = p
    function = t
  [../]
  [./xmin]
    type = DirichletBC
    boundary = left
    variable = disp_x
    value = 0
  [../]
  [./ymin]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0
  [../]
  [./zmin]
    type = DirichletBC
    boundary = back
    variable = disp_z
    value = 0
  [../]
[]


[Kernels]
  [./PoroMechanics]
    porepressure = p
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./unimportant_p]
    type = Diffusion
    variable = p
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./corner_x]
    type = PointValue
    point = '1 1 1'
    variable = disp_x
  [../]
  [./corner_y]
    type = PointValue
    point = '1 1 1'
    variable = disp_y
  [../]
  [./corner_z]
    type = PointValue
    point = '1 1 1'
    variable = disp_z
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    # bulk modulus = 1, poisson ratio = 0.2
    C_ijkl = '0.5 0.75'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./biot]
    type = GenericConstantMaterial
    prop_names = biot_coefficient
    prop_values = 2.0
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol'
    petsc_options_value = 'gmres bjacobi 1E-10 1E-10 10 1E-15 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  dt = 0.1
  end_time = 1
[]

[Outputs]
  file_base = vol_expansion_action
  exodus = true
[]

modules/tensor_mechanics/test/tests/thermal_expansion/constant_expansion_coeff.i

# This test involves only thermal expansion strains on a 2x2x2 cube of approximate
# steel material.  An initial temperature of 25 degrees C is given for the material,
# and an auxkernel is used to calculate the temperature in the entire cube to
# raise the temperature each time step.  After the first timestep,in which the
# temperature jumps, the temperature increases by 6.25C each timestep.
# The thermal strain increment should therefore be
#     6.25 C * 1.3e-5 1/C = 8.125e-5 m/m.

# This test is also designed to be used to identify problems with restart files

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t*(500.0)+300.0
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = SMALL
        incremental = true
        add_variables = true
        eigenstrain_names = eigenstrain
        generate_output = 'strain_xx strain_yy strain_zz'
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
  [../]
[]

[BCs]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 298
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 0.075
  dt = 0.0125
  dtmin = 0.0001
[]

[Outputs]
  csv = true
  exodus = true
  checkpoint = true
[]

[Postprocessors]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]
  [./strain_zz]
    type = ElementAverageValue
    variable = strain_zz
  [../]
  [./temperature]
    type = AverageNodalVariableValue
    variable = temp
  [../]
[]

modules/tensor_mechanics/tutorials/basics/part_2.4.i

#Tensor Mechanics tutorial: the basics
#Step 2, part 4
#2D axisymmetric RZ simulation of uniaxial tension with J2 plasticity with
#hardening

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = necking_quad4.e
  uniform_refine = 0
  second_order = true
[]

[Modules/TensorMechanics/Master]
  [./block1]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_yy strain_yy vonmises_stress'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1e-9
    plastic_models = J2
  [../]
[]

[UserObjects]
  [./hardening]
    type = TensorMechanicsHardeningCubic
    value_0 = 2.4e2
    value_residual = 3.0e2
    internal_0 = 0
    internal_limit = 0.005
  [../]
  [./J2]
    type = TensorMechanicsPlasticJ2
    yield_strength = hardening
    yield_function_tolerance = 1E-9
    internal_constraint_tolerance = 1E-9
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = top
    function = '0.0007*t'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.25
  end_time = 20

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm lu 1 101'
[]

[Postprocessors]
  [./ave_stress_bottom]
    type = SideAverageValue
    variable = stress_yy
    boundary = bottom
  [../]
  [./ave_strain_bottom]
    type = SideAverageValue
    variable = strain_yy
    boundary = bottom
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
  csv = true
  print_linear_residuals = false
[]

modules/porous_flow/examples/tutorial/06.i

# Darcy flow with a tracer
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
    input = annular
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer_concentration]
  [../]
[]

[ICs]
  [./tracer_concentration]
    type = FunctionIC
    function = '0.5*if(x*x+y*y<1.01,1,0)'
    variable = tracer_concentration
  [../]
[]

[PorousFlowFullySaturated]
  porepressure = porepressure
  coupling_type = Hydro
  gravity = '0 0 0'
  fp = the_simple_fluid
  mass_fraction_vars = tracer_concentration
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1E6
    boundary = injection_area
  [../]
  [./constant_outer_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = rmax
  [../]
  [./injected_tracer]
    type = DirichletBC
    variable = tracer_concentration
    value = 0.5
    boundary = injection_area
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      viscosity = 1.0E-3
      density0 = 1000.0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1E-14 0 0   0 1E-14 0   0 0 1E-14'
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityConst
    block = caps
    permeability = '1E-15 0 0   0 1E-15 0   0 0 1E-16'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E5
  nl_rel_tol = 1E-14
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/oversample/over_sampling_second_file.i

[Mesh]
  type = FileMesh
  # Read in and work with a second order mesh
  file = wedge18_mesh.e
  # If we have an oversample mesh file, we haven not yet implemented
  # synchronization of its partitioning with the problem mesh, so we
  # need to keep the problem mesh replicated.
  parallel_type = replicated
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = -4+(x*x+y*y)
  [../]
[]

[Variables]
  active = 'u'

  [./u]
  [../]
[]

[Kernels]
  active = 'ie diff ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '1 2 4'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.2
  start_time = 0
  num_steps = 3
[]

[Outputs]
  file_base = out_wedge
  [./oversample]
    type = Exodus
    file_base = out_wedge_oversample
    file = wedge6_mesh.e
  [../]
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/except5.i

# Exception: incorrect userobject types
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = -2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]

modules/level_set/examples/rotating_circle/circle_rotate_supg.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 32
  ny = 32
  uniform_refine = 2
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./vel_y]
  [../]
[]

[AuxKernels]
  [./vel_x]
    type = FunctionAux
    function = 4*y
    variable = vel_x
    execute_on = initial
  [../]
  [./vel_y]
    type = FunctionAux
    function = -4*x
    variable = vel_y
    execute_on = initial
  [../]
[]

[Variables]
  [./phi]
  [../]
[]

[Functions]
  [./phi_exact]
    type = LevelSetOlssonBubble
    epsilon = 0.03
    center = '0 0.5 0'
    radius = 0.15
  [../]
[]

[ICs]
  [./phi_ic]
    type = FunctionIC
    function = phi_exact
    variable = phi
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = phi
  [../]
  [./advection]
    type = LevelSetAdvection
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  [../]
  [./advection_supg]
    type = LevelSetAdvectionSUPG
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  [../]
  [./time_supg]
    type = LevelSetTimeDerivativeSUPG
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  [../]
[]

[Postprocessors]
  [./area]
    type = LevelSetVolume
    threshold = 0.5
    variable = phi
    location = outside
    execute_on = 'initial timestep_end'
  [../]
  [./cfl]
    type = LevelSetCFLCondition
    velocity_x = vel_x
    velocity_y = vel_y
    execute_on = 'initial'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  start_time = 0
  end_time = 1.570796
  scheme = crank-nicolson
  petsc_options_iname = '-pc_type -pc_sub_type'
  petsc_options_value = 'asm      ilu'
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = cfl
    scale = 0.8
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/combined/test/tests/power_law_hardening/sm/PowerLawHardening_sm.i

# This is a test of the isotropic power law hardening constitutive model.
# In this problem, a single Hex 8 element is fixed at the bottom and pulled at the top
# at a constant rate of 0.1.
# Before yield, stress = strain (=0.1*t) as youngs modulus is 1.0.
# The yield stress for this problem is 0.25 ( as strength coefficient is 0.5 and strain rate exponent is 0.5).
# Therefore, the material should start yielding at t = 2.5 seconds and then follow stress = K *pow(strain,n) or
# stress ~ 0.5*pow(0.1*t,0.5).

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./total_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t*(0.1)
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./total_strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = total_strain_yy
    index = 1
  [../]
 []


[BCs]

  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

[]

[Materials]
  [./vermont]
    type = SolidModel
    formulation = linear
    block = 0
    youngs_modulus = 1.0
    poissons_ratio = 0.3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    constitutive_model = powerlaw
  [../]
  [./powerlaw]
    type = IsotropicPowerLawHardening
    block = 0
    strength_coefficient = 0.5 #K
    strain_hardening_exponent = 0.5 #n
    relative_tolerance = 1e-10
    absolute_tolerance = 1e-12
  [../]

[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-ksp_snes_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 5.0
  dt = 0.25
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = total_strain_yy
  [../]
[]


[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/phase_field/test/tests/free_energy_material/MathEBFreeEnergy_split.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  xmin = 0.0
  xmax = 30.0
  ymin = 0.0
  ymax = 30.0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = CrossIC
      x1 = 0.0
      x2 = 30.0
      y1 = 0.0
      y2 = 30.0
    [../]
  [../]
  [./w]
  [../]
[]

[Preconditioning]
active = 'SMP'
  [./PBP]
   type = PBP
   solve_order = 'w c'
   preconditioner = 'AMG ASM'
   off_diag_row = 'c '
   off_diag_column = 'w '
  [../]

  [./SMP]
   type = SMP
   off_diag_row = 'w c'
   off_diag_column = 'c w'
  [../]
[]

[Kernels]

  [./cres]
    type = SplitCHParsed
    variable = c
    kappa_name = kappa_c
    w = w
    f_name = F
  [../]

  [./wres]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]

  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]

[]

[BCs]
  [./Periodic]
    [./top_bottom]
      primary = 0
      secondary = 2
      translation = '0 30.0 0'
    [../]

    [./left_right]
      primary = 1
      secondary = 3
      translation = '-30.0 0 0'
    [../]
  [../]
[]

[Materials]

  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 2.0'
  [../]
  [./free_energy]
    type = MathEBFreeEnergy
    f_name = F
    c = c
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  l_max_its = 30
  l_tol = 1.0e-3

  nl_max_its = 50
  nl_rel_tol = 1.0e-10

  dt = 10.0
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/chemical_reactions/test/tests/parser/kinetic_without_action.i

# Explicitly adds all Kernels and AuxKernels. Used to check that the
# SolidKineticReactions parser is working correctly

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a]
    initial_condition = 0.1
  [../]
  [./b]
    initial_condition = 0.1
  [../]
  [./c]
    initial_condition = 0.1
  [../]
  [./d]
    initial_condition = 0.1
  [../]
[]

[AuxVariables]
  [./m1]
  [../]
  [./m2]
  [../]
  [./m3]
  [../]
[]

[AuxKernels]
  [./m1]
    type = KineticDisPreConcAux
    variable = m1
    v = 'a b'
    sto_v = '1 1'
    log_k = -8
    r_area = 1
    ref_kconst = 1e-8
    e_act = 1e4
    gas_const = 8.314
    ref_temp = 298.15
    sys_temp = 298.15
  [../]
  [./m2]
    type = KineticDisPreConcAux
    variable = m2
    v = 'c d'
    sto_v = '2 3'
    log_k = -8
    r_area = 2
    ref_kconst = 2e-8
    e_act = 2e4
    gas_const = 8.314
    ref_temp = 298.15
    sys_temp = 298.15
  [../]
  [./m3]
    type = KineticDisPreConcAux
    variable = m3
    v = 'a c'
    sto_v = '1 -2'
    log_k = -8
    r_area = 3
    ref_kconst = 3e-8
    e_act = 3e4
    gas_const = 8.314
    ref_temp = 298.15
    sys_temp = 298.15
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./c_ie]
    type = PrimaryTimeDerivative
    variable = c
  [../]
  [./d_ie]
    type = PrimaryTimeDerivative
    variable = d
  [../]
  [./a_kin]
    type = CoupledBEKinetic
    variable = a
    v = 'm1 m3'
    weight = '1 1'
  [../]
  [./b_kin]
    type = CoupledBEKinetic
    variable = b
    v = m1
    weight = 1
  [../]
  [./c_kin]
    type = CoupledBEKinetic
    variable = c
    v = 'm2 m3'
    weight = '2 -2'
  [../]
  [./d_kin]
    type = CoupledBEKinetic
    variable = d
    v = m2
    weight = 3
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = porosity
    prop_values = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  end_time = 1
  l_tol = 1e-10
  nl_rel_tol = 1e-10
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  file_base = kinetic_out
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

modules/solid_mechanics/test/tests/rate_dep_smear_crack/crack_one_elem.i

#
# Test to exercise the exponential stress release
#
# Stress vs. strain should show a linear relationship until cracking,
#   an exponential stress release, a linear relationship back to zero
#   strain, a linear relationship with the original stiffness in
#   compression and then back to zero strain, a linear relationship
#   back to the exponential curve, and finally further exponential
#   stress release.
#

[GlobalParams]
  volumetric_locking_correction = false
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 1.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

[]

[AuxVariables]

  [./resid_x]
  [../]

  [./resid_y]
  [../]

  [./resid_z]
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./damage]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./ref_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress0_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Functions]
  [./displz]
    type = ParsedFunction
    value = ' 0.01 * t '
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = resid_x
    save_in_disp_y = resid_y
    save_in_disp_z = resid_z
  [../]
[]


[AuxKernels]
  [./strain_xx]
    type = MaterialTensorAux
    variable = strain_xx
    tensor = total_strain
    index = 0
  [../]

  [./strain_yy]
    type = MaterialTensorAux
    variable = strain_yy
    tensor = total_strain
    index = 1
  [../]

  [./strain_zz]
    type = MaterialTensorAux
    variable = strain_zz
    tensor = total_strain
    index = 2
  [../]

  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    tensor = stress
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    variable = stress_zz
    tensor = stress
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    variable = stress_xy
    tensor = stress
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    variable = stress_yz
    tensor = stress
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    variable = stress_zx
    tensor = stress
    index = 5
  [../]

  [./stress0_zz]
    type = MaterialTensorAux
    variable = stress0_zz
    tensor = stress_undamaged
    index = 2
  [../]

  [./damage]
    type = MaterialStdVectorAux
    variable = damage
    property = intvar
    index = 0
  [../]

  [./ref_stress]
    type = MaterialStdVectorAux
    variable = ref_energy
    property = intvar
    index = 1
  [../]

[]


[BCs]
  [./pull_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = displz
  [../]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0.0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0.0
  [../]
  [./fix_z]
    type = DirichletBC
    variable = disp_z
    boundary = 'back'
    value = 0.0
  [../]
[]

[Materials]
  [./elastic]
    type = SolidModel
    block = 0
    youngs_modulus = 186.5e9
    poissons_ratio = .316
    formulation = linear
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    constitutive_model = crack
  [../]

  [./crack]
    type = RateDepSmearIsoCrackModel
    block = 0
    critical_energy = 1e6
    ref_damage_rate = 1e-2
    tol = 1e-5
    maxiter = 100
    exponent = 0.75
    nstate = 2
    intvar_incr_tol = 10.0 #large value to avoid cutback
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type'
  petsc_options_value = '101                lu'

  line_search = 'none'
  nl_max_its = 20
  nl_rel_tol = 1.5e-11
  nl_abs_tol = 1e-8

  dt = 0.01
  dtmin = 0.01
  end_time = 0.5
[]

[Outputs]
  exodus = true
  csv = true
  gnuplot = true
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./stress0_zz]
    type = ElementAverageValue
    variable = stress0_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./strain_zz]
    type = ElementAverageValue
    variable = strain_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./damage]
    type = ElementAverageValue
    variable = damage
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./ref_energy]
    type = ElementAverageValue
    variable = ref_energy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./react_x]
    type = NodalSum
    variable = resid_x
    boundary = left
  [../]
  [./react_y]
    type = NodalSum
    variable = resid_y
    boundary = bottom
  [../]
  [./react_z]
    type = NodalSum
    variable = resid_z
    boundary = back
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_2/cyl2_template2.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl2_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/tensor_mechanics/test/tests/auxkernels/tensorelasticenergyaux.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  nz = 0
  xmax = 3
  ymax = 2
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./dummy]
  [../]
[]

[AuxVariables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = sin(x)*0.1
    [../]
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = cos(y)*0.05
    [../]
  [../]
  [./E]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./elastic_energy]
    type = ElasticEnergyAux
    variable = E
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityTensor
    fill_method = symmetric9
    C_ijkl = '1 2 4 3 2 5 1 3 1'
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Problem]
  kernel_coverage_check = false
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/stateful_material_sub_cycling/material_sub_app_test_master.i

[Problem]
  solve = false
[]

[Mesh] #dummy
  type = GeneratedMesh
  dim = 2
[]

[Executioner]
  type = Transient
  start_time = 0.0
  dt = 1
  end_time = 10.0
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    input_files = material_sub_app_test_sub.i

    # Test that stateful material properties
    # are updated properly with subcycling
    sub_cycling = true
  [../]
[]

[Outputs]
  csv = false
  exodus = false
[]

modules/porous_flow/test/tests/functions/mpf1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dummy]
    type = TimeDerivative
    variable = u
  [../]
[]

[Functions]
  [./dist]
    type = PiecewiseLinear
    x = '1 10'  # time
    y = '0 9'   # distance
  [../]
  [./moving_planar_front]
    type = MovingPlanarFront
    start_posn = '1 1 0'
    end_posn = '2 2 0' # it does not matter that dist exceeds this
    active_length = 5
    activation_time = 1
    deactivation_time = 9
    distance = dist
  [../]
[]

[AuxVariables]
  [./mpf]
  [../]
[]

[AuxKernels]
  [./mpf]
    type = FunctionAux
    variable = mpf
    function = moving_planar_front
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  end_time = 10
[]

[Outputs]
  file_base = mpf1
  exodus = true
[]

test/tests/parser/cli_multiapp_all/dt_from_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

[MultiApps]
  [./sub_left]
    positions = '0 0 0  0.5 0.5 0  0.6 0.6 0  0.7 0.7 0'
    type = TransientMultiApp
    input_files = 'dt_from_master_sub.i'
    app_type = MooseTestApp
  [../]

  [./sub_right]
    positions = '0 0 0  0.5 0.5 0  0.6 0.6 0  0.7 0.7 0'
    type = TransientMultiApp
    input_files = 'dt_from_master_sub.i'
    app_type = MooseTestApp
  [../]
[]

test/tests/time_integrators/implicit-euler/ie_adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 4
  ny = 4
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.25

  [./Adaptivity]
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/kernels/conservative_advection/no_upwinding_2D.i

# 2D test of advection with no upwinding
# Note there are overshoots or undershoots
# but numerical diffusion is minimized.
# The center of the blob advects with the correct velocity
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u_blob]
    type = FunctionIC
    variable = u
    function = 'if(x<0.2,if(y<0.2,1,0),0)'
  [../]
[]

[Kernels]
  [./udot]
    type = TimeDerivative
    variable = u
  [../]
  [./advection]
    type = ConservativeAdvection
    variable = u
    velocity = '2 1 0'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = LINEAR
  dt = 0.01
  end_time = 0.1
  l_tol = 1E-14
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/beam/action/2_block.i

# Test for LineElementAction on multiple blocks

# 2 beams of length 1m are fixed at one end and a force of 1e-4 N
# is applied at the other end of the beams. Beam 1 is in block 1
# and beam 2 is in block 2. All the material properties for the two
# beams are identical. The moment of inertia of beam 2 is twice that
# of beam 1.

# Since the end displacement of a cantilever beam is inversely proportional
# to the moment of inertia, the y displacement at the end of beam 1 should be twice
# that of beam 2.

[Mesh]
  type = FileMesh
  file = 2_beam_block.e
  displacements = 'disp_x disp_y disp_z'
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = 1
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = 1
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = 1
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_1]
    type = ConstantRate
    variable = disp_y
    boundary = 2
    rate = 1e-4
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Modules/TensorMechanics/LineElementMaster]
  [./block_1]
    add_variables = true
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'

    # Geometry parameters
    area = 0.5
    Iy = 1e-5
    Iz = 1e-5
    y_orientation = '0.0 1.0 0.0'

    block = 1
  [../]
  [./block_2]
    add_variables = true
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'

    # Geometry parameters
    area = 0.5
    Iy = 2e-5
    Iz = 2e-5
    y_orientation = '0.0 1.0 0.0'

    block = 2
  [../]
[]

[Materials]
  [./stress]
    type = ComputeBeamResultants
    block = '1 2'
  [../]
  [./elasticity_1]
    type = ComputeElasticityBeam
    youngs_modulus = 2.0
    poissons_ratio = 0.3
    shear_coefficient = 1.0
    block = '1 2'
  [../]
[]

[Postprocessors]
  [./disp_y_1]
    type = PointValue
    point = '1.0 0.0 0.0'
    variable = disp_y
  [../]
  [./disp_y_2]
    type = PointValue
    point = '1.0 1.0 0.0'
    variable = disp_y
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/dirackernels/nonlinear_source/nonlinear_source.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
  elem_type = QUAD4
  uniform_refine = 4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./ddt_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ddt_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[DiracKernels]
  [./nonlinear_source]
    type = NonlinearSource
    variable = u
    coupled_var = v
    scale_factor = 1000
    point = '0.2 0.3 0'
  [../]
[]

[BCs]
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]

  [./left_v]
    type = DirichletBC
    variable = v
    boundary = 3
    value = 1
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 0
  [../]
[]

[Preconditioning]
  [./precond]
    type = SMP
    # 'full = true' is required for computeOffDiagJacobian() to get
    # called.  If you comment this out, you should see that this test
    # requires more linear and nonlinear iterations.
    full = true

    # Added to test Jacobian contributions for Dirac Kernels
    # Options that do not seem to do anything for this problem? -snes_check_jacobian -snes_check_jacobian_view
    # petsc_options = '-snes_test_display' # print out all the matrix entries
    # petsc_options_iname = '-snes_type'
    # petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON' # NEWTON provides a more stringent test of off-diagonal Jacobians
  num_steps = 5
  dt = 1
  dtmin = 1
  l_max_its = 100
  nl_max_its = 6
  nl_abs_tol = 1.e-13
[]

[Postprocessors]
  # A PointValue postprocessor at the Dirac point location
  [./point_value]
    type = PointValue
    variable = u
    point = '0.2 0.3 0'
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/iterative/output_end_step.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    end_step = 5
  [../]
[]

modules/tensor_mechanics/test/tests/multi/three_surface05.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 1E-6m in y direction and 1.1E-6 in z direction.
# trial stress_yy = 1 and stress_zz = 1.1
#
# Then SimpleTester0 and SimpleTester2 should activate and the algorithm will return to
# the corner stress_yy=0.5, stress_zz=1
# However, this will mean internal0 < 0, so SimpleTester0 will be deactivated and
# then the algorithm will return to
# stress_yy=0.7, stress_zz=0.8
# internal0 should be 0.0, and internal2 should be 0.3

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1.0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface05
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

python/peacock/tests/input_tab/InputTree/gold/transient.i

# ##########################################################
# This is a simple test with a time-dependent problem
# demonstrating the use of a "Transient" Executioner.
#
# @Requirement F1.10
# ##########################################################
[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Variables]
  [u]
    order = FIRST
    family = LAGRANGE
    [InitialCondition]
      type = ConstantIC
      value = 0
    []
  []
[]

[Functions]
  [forcing_fn]
    # dudt = 3*t^2*(x^2 + y^2)
    type = ParsedFunction
    value = '3*t*t*((x*x)+(y*y))-(4*t*t*t)'
  []
  [exact_fn]
    type = ParsedFunction
    value = 't*t*t*((x*x)+(y*y))'
  []
[]

[Kernels]
  [ie]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = Diffusion
    variable = u
  []
  [ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  []
[]

[BCs]
  inactive = 'left right'
  [all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  []
  [left]
    type = DirichletBC
    variable = u
    boundary = '3'
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = '1'
    value = 1
  []
[]

[Postprocessors]
  [l2_err]
    type = ElementL2Error
    variable = 'u'
    function = exact_fn
  []
  [dt]
    type = TimestepSize
  []
[]

[Executioner]
  # Preconditioned JFNK (default)
  type = Transient
  scheme = implicit-euler
  solve_type = PJFNK
  start_time = 0.0
  num_steps = 5
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_transient
  exodus = true
[]

modules/phase_field/test/tests/SimpleACInterface/SimpleCoupledACInterface.i

#
# Test the coupled Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  nz = 0
  xmin = 0
  xmax = 50
  ymin = 0
  ymax = 50
  zmin = 0
  zmax = 50
  elem_type = QUAD4

  uniform_refine = 1
[]

[Variables]
  [./w]
  [../]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 25.0
      y1 = 25.0
      radius = 6.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 5.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]

  [./ACBulk]
    type = AllenCahn
    variable = eta
    f_name = F
  [../]

  [./CoupledBulk]
    type = MatReaction
    variable = eta
    v = w
  [../]

  [./W]
    type = Reaction
    variable = w
  [../]

  [./CoupledACInterface]
    type = SimpleCoupledACInterface
    variable = w
    v = eta
    kappa_name = 1
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'L'
    prop_values = '1'
  [../]

  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta'
    function = 'eta^2 * (1-eta)^2'
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'PJFNK'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 2
  dt = 2
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  hide = w
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_4/cyl4_template1.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl4_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/tensor_mechanics/test/tests/truss/truss_2d_action.i

#
# Truss in two dimensional space
#
# The truss is made of five equilateral triangles supported at each end.
# The truss starts at (0,0).  At (1,0), there is a point load of 25.
# The reactions are therefore
#  Ryleft  = 2/3 * 25 = 16.7
#  Ryright = 1/3 * 25 = 8.33
# The area of each member is 0.8.
# Statics gives the stress in each member.  For example, for element 6 (from
#   (0,0) to (1/2,sqrt(3)/2)), the force is
#   f = 2/3 * 25 * 2/sqrt(3) = 100/3/sqrt(3) (compressive)
#   and the stress is
#   s = -100/3/sqrt(3)/0.8 = -24.06
#

[Mesh]
  type = FileMesh
  file = truss_2d.e
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./axial_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_over_l]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./area]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./react_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./x2]
    type = PiecewiseLinear
    x = '0  1 2 3'
    y = '0 .5 1 1'
  [../]
  [./y2]
    type = PiecewiseLinear
    x = '0 1  2 3'
    y = '0 0 .5 1'
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./fixy4]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0
  [../]
[]

[DiracKernels]
  [./pull]
    type = ConstantPointSource
    value = -25
    point = '1 0 0'
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./axial_stress]
    type = MaterialRealAux
    block = 1
    property = axial_stress
    variable = axial_stress
  [../]
  [./e_over_l]
    type = MaterialRealAux
    block = 1
    property = e_over_l
    variable = e_over_l
  [../]
  [./area]
    type = ConstantAux
    block = 1
    variable = area
    value = 0.8
    execute_on = 'initial timestep_begin'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'jacobi   101'

  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10

  dt = 1
  num_steps = 1
  end_time = 1
[]

[Modules/TensorMechanics/LineElementMaster]
  [./block]
    truss = true
    add_variables = true
    displacements = 'disp_x disp_y'

#    area = area # commented out for error check

    block = 1
    save_in = 'react_x react_y'
  [../]
[]

[Materials]
  [./linelast]
    type = LinearElasticTruss
    block = 1
    youngs_modulus = 1e6
    displacements = 'disp_x disp_y'
  [../]
[]

[Outputs]
  file_base = 'truss_2d_out'
  exodus = true
[]

modules/tensor_mechanics/test/tests/visco/gen_kv_creep.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    variable = stress_xx
    rank_two_tensor = stress
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./strain_xx]
    type = RankTwoAux
    variable = strain_xx
    rank_two_tensor = total_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    variable = creep_strain_xx
    rank_two_tensor = creep_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./axial_load]
    type = NeumannBC
    variable = disp_x
    boundary = right
    value    = 10e6
  [../]
[]

[Materials]
  [./kelvin_voigt]
    type = GeneralizedKelvinVoigtModel
    creep_modulus = '10e9 10e9'
    creep_viscosity = '1 10'
    poisson_ratio = 0.2
    young_modulus = 10e9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'creep'
  [../]
  [./creep]
    type = LinearViscoelasticStressUpdate
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./update]
    type = LinearViscoelasticityManager
    viscoelastic_model = kelvin_voigt
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./creep_strain_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  l_max_its  = 100
  l_tol      = 1e-8
  nl_max_its = 50
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8

  dtmin = 0.01
  end_time = 100
  [./TimeStepper]
    type = LogConstantDT
    first_dt = 0.1
    log_dt = 0.1
  [../]

[]

[Outputs]
  file_base = gen_kv_creep_out
  exodus = true
[]

modules/porous_flow/test/tests/chemistry/except11.i

# Exception test.
# Incorrect number of molar volumes

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    reactions = '1 1'
    specific_reactive_surface_area = 1.0
    kinetic_rate_constant = 1.0e-8
    activation_energy = 1.5e4
    molar_volume = '1 1'
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

test/tests/functions/solution_function/solution_function_rot3.i

# checking rotation of points by 90 deg about z axis, then 45 deg about x axis in a SolutionUserObject
[Mesh]
  # this is chosen so when i rotate through 45deg i get a length of "1" along the x or y or z direction
  type = GeneratedMesh
  dim = 3
  xmin = -0.70710678
  xmax = 0.70710678
  nx = 3
  ymin = -0.70710678
  ymax = 0.70710678
  ny = 3
  zmin = -0.70710678
  zmax = 0.70710678
  nz = 3
[]

[UserObjects]
  [./solution_uo]
    type = SolutionUserObject
    mesh = cube_with_u_equals_x.e
    timestep = 1
    system_variables = u
    # the following takes:
    # (0.7, 0.7, +/-0.7) -> (-0.7, 0.7, +/-0.7)
    # (-0.7, 0.7, +/-0.7) -> (-0.7, -0.7, +/-0.7)
    # (0.7, -0.7, +/-0.7) -> (0.7, 0.7, +/-0.7)
    # (-0.7, -0.7, +/-0.7) -> (0.7, -0.7, +/-0.7)
    rotation0_vector = '0 0 1'
    rotation0_angle = 90
    # then the following takes:
    # (+/-0.7, 0.7, 0.7) -> (+/-0.7, 0, 1)
    # (+/-0.7, 0.7, -0.7) -> (+/-0.7, 1, 0)
    # (+/-0.7, -0.7, 0.7) -> (+/-0.7, -1, 0)
    # (+/-0.7, -0.7, -0.7) -> (+/-0.7, 0, -1)
    rotation1_vector = '1 0 0'
    rotation1_angle = 45
    # so, in total: a point y = +/-0.7 takes values from x = -/+0.7, so solution_function_rot3 should have u = -y
    transformation_order = 'rotation0 rotation1'
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = solution_fcn
  [../]
[]

[Functions]
  [./solution_fcn]
    type = SolutionFunction
    from_variable = u
    solution = solution_uo
  [../]
[]

[Kernels]
  [./diff]
    type = TimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 1
  end_time = 1
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = solution_function_rot3
  exodus = true
[]

test/tests/functions/piecewise_multilinear/twoD_const.i

# PiecewiseMultilinear function tests in 2D
# See [Functions] block for a description of the tests
# The functions are compared with ParsedFunctions using postprocessors

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 2
  nx = 4
  ymin = -1
  ymax =  1
  ny = 4
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./constant]
    family = MONOMIAL
    order = CONSTANT
  [../]

  [./constant_ref]
    family = MONOMIAL
    order = CONSTANT
  [../]

  [./diff]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./const_AuxK]
    type = FunctionAux
    variable = constant
    function = const_fcn
  [../]

  [./const_ref_AuxK]
    type = FunctionAux
    variable = constant_ref
    function = const_ref
  [../]

  [./diff]
    type = ParsedAux
    variable = diff
    function = 'constant - constant_ref'
    args = 'constant constant_ref'
  [../]
[]


[Functions]
  [./const_fcn]
    type = PiecewiseMulticonstant
    direction = 'left right'
    data_file = twoD_const.txt
  [../]

  [./const_ref]
    type = ParsedFunction
    value = '
            ix := if(x < 0.5, 0, if(x < 1, 1, 2));
            iy := if(y > 0, 2, if(y > -0.5, 1, 0));
            iy * 3 + ix
            '
  [../]
[]


[Postprocessors]
  [./diff_pp]
    type = ElementIntegralVariablePostprocessor
    variable = diff
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = twoD_const
  hide = dummy
  exodus = true
[]

modules/xfem/test/tests/bimaterials/inclusion_bimaterials_2d.i

# This test is for a matrix-inclusion composite materials
# The global stress is determined by switching the stress based on level set values
# The inclusion geometry is marked by a level set function
# The matrix and inclusion are glued together

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 11
  ny = 11
  xmin = 0.0
  xmax = 5.
  ymin = 0.0
  ymax = 5.
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Functions]
  [./ls_func]
    type = ParsedFunction
    value = 'sqrt((y-2.5)*(y-2.5) + (x-2.5)*(x-2.5)) - 1.5'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./a_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./a_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./a_strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./b_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./b_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./b_strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_xx
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_yy
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
    variable = stress_xy
  [../]
  [./a_strain_xx]
    type = RankTwoAux
    rank_two_tensor = A_total_strain
    index_i = 0
    index_j = 0
    variable = a_strain_xx
  [../]
  [./a_strain_yy]
    type = RankTwoAux
    rank_two_tensor = A_total_strain
    index_i = 1
    index_j = 1
    variable = a_strain_yy
  [../]
  [./a_strain_xy]
    type = RankTwoAux
    rank_two_tensor = A_total_strain
    index_i = 0
    index_j = 1
    variable = a_strain_xy
  [../]
  [./b_strain_xx]
    type = RankTwoAux
    rank_two_tensor = B_total_strain
    index_i = 0
    index_j = 0
    variable = b_strain_xx
  [../]
  [./b_strain_yy]
    type = RankTwoAux
    rank_two_tensor = B_total_strain
    index_i = 1
    index_j = 1
    variable = b_strain_yy
  [../]
  [./b_strain_xy]
    type = RankTwoAux
    rank_two_tensor = B_total_strain
    index_i = 0
    index_j = 1
    variable = b_strain_xy
  [../]
[]

[Constraints]
  [./dispx_constraint]
    type = XFEMSingleVariableConstraint
    use_displaced_mesh = false
    variable = disp_x
    alpha = 1e8
    geometric_cut_userobject = 'level_set_cut_uo'
  [../]
  [./dispy_constraint]
    type = XFEMSingleVariableConstraint
    use_displaced_mesh = false
    variable = disp_y
    alpha = 1e8
    geometric_cut_userobject = 'level_set_cut_uo'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_x
    function = '0.03*t'
  [../]
  [./topy]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_y
    function = '0.03*t'
  [../]
[]

[Materials]
  [./elasticity_tensor_A]
    type = ComputeIsotropicElasticityTensor
    base_name = A
    youngs_modulus = 1e9
    poissons_ratio = 0.3
  [../]
  [./strain_A]
    type = ComputeSmallStrain
    base_name = A
  [../]
  [./stress_A]
    type = ComputeLinearElasticStress
    base_name = A
  [../]
  [./elasticity_tensor_B]
    type = ComputeIsotropicElasticityTensor
    base_name = B
    youngs_modulus = 1e5
    poissons_ratio = 0.3
  [../]
  [./strain_B]
    type = ComputeSmallStrain
    base_name = B
  [../]
  [./stress_B]
    type = ComputeLinearElasticStress
    base_name = B
  [../]
  [./combined_stress]
    type = LevelSetBiMaterialRankTwo
    levelset_positive_base = 'A'
    levelset_negative_base = 'B'
    level_set_var = ls
    prop_name = stress
  [../]
  [./combined_dstressdstrain]
    type = LevelSetBiMaterialRankFour
    levelset_positive_base = 'A'
    levelset_negative_base = 'B'
    level_set_var = ls
    prop_name = Jacobian_mult
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

# controls for linear iterations
  l_max_its = 20
  l_tol = 1e-3

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-7

# time control
  start_time = 0.0
  dt = 0.5
  end_time = 1.0
  num_steps = 2

  max_xfem_update = 1
[]

[Outputs]
  exodus = true
  execute_on = timestep_end
  csv = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/chemical_reactions/test/tests/desorption/langmuir_lumping_problem.i

# exploring CONSTANT MONOMIAL
[Mesh]
  type = FileMesh
  file = three_eles.e
[]

[Variables]
  [./pressure]
    # try with and without the CONSTANT MONOMIAL to see that
    # CONSTANT MONOMIAL yields the correct result that pressure(x=0) is unchanged
    # but LINEAR LAGRANGE changes pressure(x=0) since pressure is not lumped at x=0
    # (the x=0 eqn is a*dot(p0)+b*dot(p10)=0, and x=10 eqn a*dot(p10)+b*dot(p20)=desorption,
    #  and since dot(p10)>0, we get dot(p0)<0)
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./conc]
    family = MONOMIAL
    order = CONSTANT
    block = centre_block
  [../]
[]

[ICs]
  [./p_ic]
    type = ConstantIC
    variable = pressure
    value = 1.0
  [../]
  [./conc_ic]
    type = ConstantIC
    variable = conc
    value = 1.0
    block = centre_block
  [../]
[]


[Kernels]
  [./c_dot]
    type = TimeDerivative
    block = centre_block
    variable = conc
  [../]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    block = centre_block
    variable = conc
    pressure_var = pressure
  [../]
  [./rho_dot]
    type = TimeDerivative
    variable = pressure
  [../]
  [./flux_to_porespace]
    type = DesorptionToPorespace
    block = centre_block
    variable = pressure
    conc_var = conc
  [../]
[]

[Materials]
  [./rock]
    type = GenericConstantMaterial
    block = 'left_block centre_block right_block'
  [../]
  [./lang_stuff]
    type = LangmuirMaterial
    block = centre_block
    mat_desorption_time_const = 0.1
    mat_adsorption_time_const = 0.1
    mat_langmuir_density = 1
    mat_langmuir_pressure = 1
    pressure_var = pressure
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

[Outputs]
  file_base = langmuir_lumping_problem
  exodus = true
[]

modules/peridynamics/test/tests/jacobian_check/2D_thermomechanics_BPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = BOND
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConductionBPD
    variable = temp
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.33
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialBPD
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
  [../]

  [./thermal]
    type = ThermalConstantHorizonMaterialBPD
    thermal_conductivity = 1.0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1
[]

test/tests/multiapps/grid-sequencing/fine.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 40
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [rxn]
    type = Reaction
    variable = u
  []
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]


[Executioner]
  type = Transient
  num_steps = 2
  dt = 1

  solve_type = 'PJFNK'
  petsc_options = '-snes_monitor_solution'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./coarse]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_begin
    positions = '0 0 0'
    input_files = coarse.i
  [../]
[]

[Transfers]
  [./mesh_function_begin]
    type = MultiAppMeshFunctionTransfer
    direction = from_multiapp
    multi_app = coarse
    source_variable = u
    variable = u
    execute_on = timestep_begin
  [../]
[]

test/tests/multiapps/loose_couple_time_adapt/begin.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[MultiApps]
  [./dummy]
    type = TransientMultiApp
    input_files = adaptiveDT.i
    execute_on = timestep_begin
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 0.006
  dt = 0.006
  nl_abs_tol = 1.0e-8
[]

[Outputs]
  exodus = true
  file_base = begin
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update5.i

# MC update version, with only Tensile with tensile strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.
# Returns to close to the tip of the yield function.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '15 1 0.2  1 10 -0.3  -0.3 0.2 8'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/ad_viscoplasticity_stress_update/creep.i

# This test is provided as a check to ensure ADComputeMultiplePorousInelasticStress

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  xmax = 0.002
  ymax = 0.002
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  add_variables = true
  base_name = 'total'
  generate_output = 'strain_xx strain_yy strain_xy hydrostatic_stress vonmises_stress'
  use_automatic_differentiation = true
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0 0.1'
    y = '0 1e-5'
  [../]
[]

[Materials]
  active='elasticity_tensor porous_stress creep'
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.3
    base_name = 'total'
  [../]
  [./porous_stress]
    type = ADComputeMultiplePorousInelasticStress
    inelastic_models = creep
    initial_porosity = 0.1
    outputs = all
    base_name = 'total'
  [../]
  [./regular_stress]
    type = ADComputeMultipleInelasticStress
    inelastic_models = creep
    outputs = all
    base_name = 'total'
  [../]
  [./porosity]
    type = GenericConstantMaterial
    prop_names = porosity
    prop_values = 0.1
    outputs = all
  [../]
  [./creep]
    type = ADPowerLawCreepStressUpdate
    activation_energy = 4e4
    temperature = 1200
    coefficient = 1e-18
    gas_constant = 1.987
    n_exponent = 3
    base_name = 'creep'
    outputs = all
  [../]
[]

[BCs]
  [./no_disp_x]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_disp_y]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./pull_disp_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pull
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 0.01
  end_time = 0.12
[]

[Postprocessors]
  [./disp_x]
    type = SideAverageValue
    variable = disp_x
    boundary = right
  [../]
  [./disp_y]
    type = SideAverageValue
    variable = disp_y
    boundary = top
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = total_hydrostatic_stress
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = total_vonmises_stress
  [../]
  [./dt]
    type = TimestepSize
  [../]
  [./num_lin]
    type = NumLinearIterations
    outputs = console
  [../]
  [./num_nonlin]
    type = NumNonlinearIterations
    outputs = console
  [../]
  [./eff_creep_strain]
    type = ElementAverageValue
    variable = creep_effective_creep_strain
  [../]
  [./porosity]
    type = ElementAverageValue
    variable = porosity
  [../]
[]

[Outputs]
  csv = true
[]

test/tests/materials/output/output_via_outputs.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmax = 10
  ymax = 10
  uniform_refine = 1
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 10
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./test_material]
    type = OutputTestMaterial
    block = 0
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    output_material_properties = true
  [../]
[]

test/tests/functions/solution_function/solution_function_rot4.i

# checking rotation of points by 45 deg about z axis in a SolutionUserObject for a 2D situation
[Mesh]
  # this is chosen so when i rotate through 45deg i get a length of "1" along the x or y direction
  type = GeneratedMesh
  dim = 2
  xmin = -0.70710678
  xmax = 0.70710678
  nx = 3
  ymin = -0.70710678
  ymax = 0.70710678
  ny = 3
[]

[UserObjects]
  [./solution_uo]
    type = SolutionUserObject
    mesh = square_with_u_equals_x.e
    timestep = 1
    system_variables = u
    rotation0_vector = '0 0 1'
    rotation0_angle = 45
    transformation_order = rotation0
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = solution_fcn
  [../]
[]

[Functions]
  [./solution_fcn]
    type = SolutionFunction
    from_variable = u
    solution = solution_uo
  [../]
[]

[Kernels]
  [./diff]
    type = TimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 1
  end_time = 1
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = solution_function_rot4
  exodus = true
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest5.i

# 2D, non-concave
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  xmin = 0
  xmax = 4
  ymin = 0
  ymax = 4
[]

[MeshModifiers]
  [./SubdomainBoundingBox1]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '1 2 1'
  [../]
  [./SubdomainBoundingBox2]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '1 1 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeleter
    block_id = 1
    depends_on = 'SubdomainBoundingBox1 SubdomainBoundingBox2'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/time_steppers/function_dt/function_dt_no_interpolation.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax =  1
  ymin = -1
  ymax =  1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]

  [./dts]
    type = PiecewiseConstant
    x = '0  4  8 12  20'
    y = '0  1  2  4  8'
    direction = right
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  start_time = 0
  end_time = 20
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_4/brick4_template1_sm.i

[Mesh]
  file = brick4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_x
  [../]
  [./disp_x64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_x
  [../]
  [./disp_y59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_y
  [../]
  [./disp_y64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x59 disp_y59 disp_x64 disp_y64 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/stochastic_tools/test/tests/transfers/errors/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/chem03.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Dissolution with temperature
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.1
  [../]
  [./b]
    initial_condition = 0.2
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1.234
  [../]
  [./ini_sec_conc]
    initial_condition = 0.222
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1E-5
    stoichiometry = 2
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 2.2E-5
    stoichiometry = 3
  [../]
  [./temp]
    type = Diffusion
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b temp'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '0.5 0.8'
    reactions = '2 3'
    specific_reactive_surface_area = -44.4E-2
    kinetic_rate_constant = 0.678
    activation_energy = 4.4
    molar_volume = 3.3
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = 1.1
    eta_exponent = 1.2
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_sec_conc
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

modules/phase_field/test/tests/phase_field_crystal/PFCRFF/PFCRFF_expansion_test.i

[GlobalParams]
  num_L = 5
  L_name_base = L
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 12
  ny = 12
  xmax = 6
  ymax = 6
[]

[Variables]
  [./PFCRFFVariables]
  [../]
  [./n]
    [./InitialCondition]
      type = RandomIC
      max = 1.00187734619
      min = -1.00187734619
      seed = 12345
    [../]
  [../]
[]

[Kernels]
  [./PFCRFFKernel]
    n_name = n
    log_approach = expansion
    n_exp_terms = 5
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./PFC]
    type = PFCRFFMaterial
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Preconditioning]
  active = 'SMP'
  [./SMP]
    type = SMP
    full = true
  [../]
  [./FDP]
    type = FDP
    full = true
  [../]
[]

[Executioner]
  # petsc_options = '-snes_mf_operator -ksp_monitor'
  # petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  # petsc_options_value = 'hypre boomeramg 31'
  # petsc_options_iname = -pc_type
  # petsc_options_value = lu
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         101   preonly   lu      5'
  type = Transient
  num_steps = 1
  dt = 0.1
  l_max_its = 50
  nl_max_its = 20
  solve_type = NEWTON
  petsc_options = '-pc_factor_shift_nonzero '
  l_tol = 1e-04
  nl_rel_tol = 1e-6
  scheme = bdf2
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/thermal_expansion_function/thermal_expansion_function_linear_alpha_test.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function is a linear function
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# The two models produce very similar results.  There are slight
# differences due to the large deformation treatment.

[Mesh]
  file = 'blocks.e'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./mean_alpha]
    type = Elastic
    block = 1
    youngs_modulus = 1e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion_function = cte_func_mean
    stress_free_temperature = 0.0
    thermal_expansion_reference_temperature = 0.5
    thermal_expansion_function_type = mean
  [../]

  [./inst_alpha]
    type = Elastic
    block = 2
    youngs_modulus = 1e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    thermal_expansion_function_type = instantaneous
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (0.5 * t^2 - 0.5 * tsf^2) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 0.0
               2 2.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  file_base = linear_alpha_out
  exodus = true
  csv = true
[]

python/peacock/tests/common/transient_with_date.i

###########################################################
# This is a simple test with a time-dependent problem
# demonstrating the use of a "Transient" Executioner.
#
# @Requirement F1.10
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./dt]
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'

  # Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = with_date
  exodus = true
  [./with_date]
    type = Exodus
    file_base = with_date
    append_date = true
    append_date_format = '%Y-%m-%d'
  [../]
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_adaptivity.i

# Pressure pulse in 1D with 1 phase - transient simulation with a constant
# PorousFlowPorosity and mesh adaptivity with an indicator

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[Adaptivity]
  marker = marker
  [./Markers]
    [./marker]
      type = ErrorFractionMarker
      indicator = front
      refine = 0.5
      coarsen = 0.2
    [../]
  [../]
  [./Indicators]
    [./front]
      type = GradientJumpIndicator
      variable = pp
    [../]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 2E6
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = pp
    gravity = '0 0 0'
    fluid_component = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    preset = false
    value = 3E6
    variable = pp
  [../]
  [./right]
    type = PorousFlowPiecewiseLinearSink
    variable = pp
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E9'
    multipliers = '0 1E9'
    mass_fraction_component = 0
    use_mobility = true
    flux_function = 1E-6
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1e3
  end_time = 5e3
[]

[Postprocessors]
  [./p000]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p010]
    type = PointValue
    variable = pp
    point = '10 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p020]
    type = PointValue
    variable = pp
    point = '20 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p030]
    type = PointValue
    variable = pp
    point = '30 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p040]
    type = PointValue
    variable = pp
    point = '40 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p050]
    type = PointValue
    variable = pp
    point = '50 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p060]
    type = PointValue
    variable = pp
    point = '60 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p070]
    type = PointValue
    variable = pp
    point = '70 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p080]
    type = PointValue
    variable = pp
    point = '80 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p090]
    type = PointValue
    variable = pp
    point = '90 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p100]
    type = PointValue
    variable = pp
    point = '100 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  print_linear_residuals = false
  csv = true
[]

test/tests/materials/stateful_prop/computing_initial_residual_test.i

[Mesh]
  dim = 3
  file = cube.e
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./prop1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./prop1_output]
    type = MaterialRealAux
    variable = prop1
    property = thermal_conductivity
  [../]
[]

[Kernels]
  [./heat]
    type = MatDiffusionTest
    variable = u
    prop_name = thermal_conductivity
  [../]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0.0
  [../]

  [./top]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1.0
  [../]
[]

[Materials]
  [./stateful]
    type = ComputingInitialTest
    block = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  l_max_its = 10
  start_time = 0.0
  num_steps = 5
  dt = .1
[]

[Outputs]
  file_base = computing_initial_residual_test_out
  [./out]
    type = Exodus
    elemental_as_nodal = true
    execute_elemental_on = none
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform_hard21.i

# Mohr-Coulomb only
# apply stretches in x direction and smaller stretches in the y direction
# to observe return to the MC plane
# This tests uses hardening of the cohesion.  The returned configuration
# should obey
# 0 = 0.5 * (Smax - Smin) + 0.5 * (Smax + Smin) * sin(phi) - C cos(phi)
# which allows inference of C.
# The tensile internal parameter is recorded, to check that it is zero

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.4E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.1E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 6
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
[]

[Postprocessors]
  [./s_max]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_mid]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_min]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningCubic
    value_0 = 10
    value_residual = 20
    internal_limit = 5E-6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1E7
    poissons_ratio = 0.3
  [../]
  [./mc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    smoothing_tol = 0
    yield_function_tol = 1.0E-9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard21
  csv = true
[]

modules/tensor_mechanics/test/tests/finite_strain_tensor_mechanics_tests/elastic_rotation.i

#
# Rotation Test
#
# This test is designed to compute a uniaxial stress and then follow that
# stress as the mesh is rotated 90 degrees.
#
# The mesh is composed of one block with a single element.  The nodal
# displacements in the x and y directions are prescribed.  Poisson's
# ratio is zero.
#

[Mesh]
  file = rotation_test.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  # Functions
  [./x_200]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, delta*t, (1.0+delta)*cos(pi/2*(t-t0)) - 1.0)'
  [../]
  [./y_200]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, 0.0, (1.0+delta)*sin(pi/2*(t-t0)))'
  [../]
  [./x_300]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, delta*t, (1.0+delta)*cos(pi/2.0*(t-t0)) - sin(pi/2.0*(t-t0)) - 1.0)'
  [../]
  [./y_300]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, 0.0, cos(pi/2.0*(t-t0)) + (1+delta)*sin(pi/2.0*(t-t0)) - 1.0)'
  [../]
  [./x_400]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, 0.0, -sin(pi/2.0*(t-t0)))'
  [../]
  [./y_400]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, 0.0, cos(pi/2.0*(t-t0)) - 1.0)'
  [../]
[]

[Variables]
  # Variables
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  # AuxVariables
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  # AuxKernels
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
[]

[BCs]
  # BCs
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 100
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./x_200]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 200
    function = x_200
  [../]
  [./y_200]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 200
    function = y_200
  [../]
  [./x_300]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 300
    function = x_300
  [../]
  [./y_300]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 300
    function = y_300
  [../]
  [./x_400]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 400
    function = x_400
  [../]
  [./y_400]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 400
    function = y_400
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '100 200 300 400'
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 1
    C_ijkl = '1.0e6  0.0   0.0 1.0e6  0.0  1.0e6 0.5e6 0.5e6 0.5e6'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 1
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 1
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_xy]
    type = ElementAverageValue
    variable = stress_xy
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  # Executioner
  type = Transient

  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type '
  petsc_options_value = 'lu'
  nl_rel_tol = 1e-30
  nl_abs_tol = 1e-20
  l_max_its = 20
  start_time = 0.0
  dt = 0.01
  end_time = 2.0
[]

[Outputs]
  exodus = true
[] # Outputs

modules/porous_flow/test/tests/dirackernels/pls02.i

# fully-saturated situation with a poly-line sink with use_mobility=true
# The poly-line consists of 2 points, and has a length
# of 0.5.  Each point is weighted with a weight of 0.1
# The PorousFlowPolyLineSink has
# p_or_t_vals = 0 1E7
# fluxes = 0 1
# so that for 0<=porepressure<=1E7
# base flux = porepressure * 1E-6 * mobility  (measured in kg.m^-1.s^-1),
# and when multiplied by the poly-line length, and
# the weighting of each point, the mass flux is
# flux = porepressure * 0.5*E-8 * mobility (kg.s^-1).
#
# The fluid and matrix properties are:
# porosity = 0.1
# element volume = 8 m^3
# density = dens0 * exp(P / bulk), with bulk = 2E7
# initial porepressure P0 = 1E7
# viscosity = 0.2
# So, fluid mass = 0.8 * density (kg)
#
# The equation to solve is
# d(Mass)/dt = - porepressure * 0.5*E-8 * density / viscosity
#
# PorousFlow discretises time to conserve mass, so to march
# forward in time, we must solve
# Mass(dt) = Mass(0) - P * 0.5E-8 * density / viscosity * dt
# or
# 0.8 * dens0 * exp(P/bulk) = 0.8 * dens0 * exp(P0/bulk) - P * 0.5E-8 * density / viscosity * dt
# For the numbers written above this gives
# P(t=1) = 6.36947 MPa
# which is given precisely by MOOSE
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./pls_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e7
      viscosity = 0.2
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./pls]
    # This defines a sink that has strength
    # f = L(P) * relperm * L_seg
    # where
    #    L(P) is a piecewise-linear function of porepressure
    #      that is zero at pp=0 and 1 at pp=1E7
    #    relperm is the relative permeability of the fluid
    #    L_seg is the line-segment length associated with
    #      the Dirac points defined in the file pls02.bh
    type = PorousFlowPolyLineSink

    # Because the Variable for this Sink is pp, and pp is associated
    # with the fluid-mass conservation equation, this sink is extracting
    # fluid mass (and not heat energy or something else)
    variable = pp

    # The following specfies that the total fluid mass coming out of
    # the porespace via this sink in this timestep should be recorded
    # in the pls_total_outflow_mass UserObject
    SumQuantityUO = pls_total_outflow_mass

    # The following file defines the polyline geometry
    # which is just two points in this particular example
    point_file = pls02.bh

    # Now define the piecewise-linear function, L

    # First, we want L to be a function of porepressure (and not
    # temperature or something else).  The following means that
    # p_or_t_vals should be intepreted by MOOSE as the zeroth-phase
    # porepressure
    function_of = pressure
    fluid_phase = 0

    # Second, define the piecewise-linear function, L
    # The following means
    #    flux=0 when pp=0  (and also pp<0)
    #    flux=1 when pp=1E7  (and also pp>1E7)
    #    flux=linearly intepolated between pp=0 and pp=1E7
    # When flux>0 this means a sink, while flux<0 means a source
    p_or_t_vals = '0 1E7'
    fluxes = '0 1'

    # Finally, in this case we want to always multiply
    # L by the fluid mobility (of the zeroth phase) and
    # use that in the sink strength instead of the bare L
    # computed above
    use_mobility = true
  [../]
[]

[Postprocessors]
  [./pls_report]
    type = PorousFlowPlotQuantity
    uo = pls_total_outflow_mass
  [../]
  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 pls_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
  dt = 1
  solve_type = NEWTON
[]

[Outputs]
  file_base = pls02
  exodus = false
  csv = true
  execute_on = timestep_end
[]

test/tests/auxkernels/time_derivative/time_derivative_nl.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = -5.0
  xmax =  5.0
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./c_dot]
    order = FIRST
    family = LAGRANGE
  [../]
  [./c_dot_elem]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./coupled_dot]
    type = DotCouplingAux
    variable = c_dot
    v = c
  [../]
  [./coupled_dot_elem]
    type = DotCouplingAux
    variable = c_dot_elem
    v = c
  [../]
[]

[ICs]
  [./centered_gauss_func]
    type = FunctionIC
    variable = c
    function = gaussian_1d
  [../]
[]

[Functions]
  [./gaussian_1d]
    type = ParsedFunction
    value = exp(-x*x/2.0/1.0/1.0)
  [../]
[]

[Kernels]
  [./dot]
    type = TimeDerivative
    variable = c
  [../]
  [./diff]
    type = Diffusion
    variable = c
  [../]
[]

[BCs]
  [./Periodic]
    [./auto]
      variable = c
      auto_direction = 'x'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  dt = 0.1
  num_steps = 5
[]


[Outputs]
  exodus = true
  #
[]

modules/porous_flow/test/tests/flux_limited_TVD_pflow/jacobian_02.i

# Checking the Jacobian of Flux-Limited TVD Advection, 1 phase, 3 components, unsaturated, using flux_limiter_type = none
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  xmin = 0
  xmax = 1
  ny = 1
  ymin = -1
  ymax = 2
[]

[GlobalParams]
  gravity = '1 2 -0.5'
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./tracer0]
  [../]
  [./tracer1]
  [../]
[]


[ICs]
  [./pp]
    variable = pp
    type = RandomIC
    min = -1
    max = 0
  [../]
  [./tracer0]
    variable = tracer0
    type = RandomIC
    min = 0
    max = 1
  [../]
  [./tracer1]
    variable = tracer1
    type = RandomIC
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./fluxpp]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = pp
    advective_flux_calculator = advective_flux_calculator_0
  [../]
  [./flux0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = tracer0
    advective_flux_calculator = advective_flux_calculator_1
  [../]
  [./flux1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = tracer1
    advective_flux_calculator = advective_flux_calculator_2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.4
      viscosity = 1.1
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp tracer0 tracer1'
    number_fluid_phases = 1
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1
    m = 0.5
  [../]
  [./advective_flux_calculator_0]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = None
    fluid_component = 0
  [../]
  [./advective_flux_calculator_1]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = None
    fluid_component = 1
  [../]
  [./advective_flux_calculator_2]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = None
    fluid_component = 2
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'tracer0 tracer1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    phase = 0
    n = 2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.21 0 0  0 1.5 0  0 0 0.8'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
  num_steps = 1
  dt = 1
[]

modules/phase_field/test/tests/phase_field_kernels/SplitCHWRes.i

#
# Test the split parsed function free enery Cahn-Hilliard Bulk kernel
# with two concentration variables and coupling through off-diagonal Onsager
# matrix coefficients
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0
  xmax = 60
  ymin = 0
  ymax = 60
  elem_type = QUAD4
[]

[Variables]
  [./c1]
    [./InitialCondition]
      type = FunctionIC
      function = 'cos(x/60*pi)'
    [../]
  [../]
  [./c2]
    [./InitialCondition]
      type = FunctionIC
      function = 'cos(y/60*pi)'
    [../]
  [../]
  [./w1]
  [../]
  [./w2]
  [../]
[]

[Kernels]
  [./c1_res]
    type = SplitCHParsed
    variable = c1
    f_name = F
    kappa_name = kappa_c
    w = w1
  [../]
  [./w11_res]
    type = SplitCHWRes
    variable = w1
    mob_name = M11
  [../]
  [./w12_res]
    type = SplitCHWRes
    variable = w1
    w = w2
    mob_name = M12
  [../]

  [./c2_res]
    type = SplitCHParsed
    variable = c2
    f_name = F
    kappa_name = kappa_c
    w = w2
  [../]
  [./w22_res]
    type = SplitCHWRes
    variable = w2
    mob_name = M22
  [../]
  [./w21_res]
    type = SplitCHWRes
    variable = w2
    w = w1
    mob_name = M21
  [../]

  [./time1]
    type = CoupledTimeDerivative
    variable = w1
    v = c1
  [../]
  [./time2]
    type = CoupledTimeDerivative
    variable = w2
    v = c2
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names  = 'M11 M12 M21 M22 kappa_c'
    prop_values = '10  2.5 20  5   40'
  [../]

  [./free_energy]
    # equivalent to `MathFreeEnergy`
    type = DerivativeParsedMaterial
    f_name = F
    args = 'c1 c2'
    function = '0.25*(1+c1)^2*(1-c1)^2 + 0.25*(1+c2)^2*(1-c2)^2'
    derivative_order = 2
  [../]
[]

[Preconditioning]
  # active = ' '
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = 'NEWTON'
  petsc_options_iname = -pc_type
  petsc_options_value = lu

  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 2

  dt = 10
[]

[Outputs]
  exodus = true
[]

modules/functional_expansion_tools/test/tests/errors/multiapp_missing_sub_object.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = Diffusion
    variable = m
  [../]
  [./time_diff_m]
    type = TimeDerivative
    variable = m
  [../]
  [./s_in]
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'left right'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = multiapp_sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

modules/combined/test/tests/mortar_tm/2drz/frictionless_second/small.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'small'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./corner]
    type = ExtraNodesetGenerator
    input = block_rename
    coord = '0 -10.0'
    new_boundary = point
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = corner
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
  [../]
  [./plank]
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/combined/test/tests/simple_contact/sm/simple_contact_test2_sm.i

[Mesh]
  file = contact.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 5e6
    formulation = penalty
    system = constraint
    master_slave_jacobian = false
    normalize_penalty = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]

  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    formulation = Nonlinear3D
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    formulation = Nonlinear3D
    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'

  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/surface_tension_KKS/surface_tension_VDWgas.i

# Test for ComputeExtraStressVDWGas
# Gas bubble with r = 15 nm in a solid matrix
# The gas pressure is counterbalanced by the surface tension of the solid-gas interface,
# which is included with ComputeSurfaceTensionKKS

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 300
  xmin = 0
  xmax = 30
[]

[Problem]
  coord_type = RSPHERICAL
[]

[GlobalParams]
  displacements = 'disp_x'
[]

[Variables]
  # order parameter
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]

  # gas concentration
  [./cg]
    order = FIRST
    family = LAGRANGE
  [../]

  # vacancy concentration
  [./cv]
    order = FIRST
    family = LAGRANGE
  [../]


  # gas chemical potential
  [./wg]
    order = FIRST
    family = LAGRANGE
  [../]

  # vacancy chemical potential
  [./wv]
    order = FIRST
    family = LAGRANGE
  [../]


  # Matrix phase gas concentration
  [./cgm]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1.01e-31
  [../]

  # Matrix phase vacancy concentration
  [./cvm]
    order = FIRST
    family = LAGRANGE
    initial_condition = 2.25e-11
  [../]

  # Bubble phase gas concentration
  [./cgb]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.2714
  [../]

  # Bubble phase vacancy concentration
  [./cvb]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.7286
  [../]
[]

[ICs]
  [./eta_ic]
    variable = eta
    type = FunctionIC
    function = ic_func_eta
  [../]
  [./cv_ic]
    variable = cv
    type = FunctionIC
    function = ic_func_cv
  [../]
  [./cg_ic]
    variable = cg
    type = FunctionIC
    function = ic_func_cg
  [../]
[]

[Functions]
  [./ic_func_eta]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2+z^2);0.5*(1.0-tanh((r-r0)/delta_eta/sqrt(2.0)))'
    vars = 'delta_eta r0'
    vals = '0.321     15'
  [../]
  [./ic_func_cv]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2+z^2);eta_an:=0.5*(1.0-tanh((r-r0)/delta/sqrt(2.0)));cvbubinit*eta_an^3*(6*eta_an^2-15*eta_an+10)+cvmatrixinit*(1-eta_an^3*(6*eta_an^2-15*eta_an+10))'
    vars = 'delta r0  cvbubinit cvmatrixinit'
    vals = '0.321 15  0.7286    2.25e-11'
  [../]
  [./ic_func_cg]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2+z^2);eta_an:=0.5*(1.0-tanh((r-r0)/delta/sqrt(2.0)));cgbubinit*eta_an^3*(6*eta_an^2-15*eta_an+10)+cgmatrixinit*(1-eta_an^3*(6*eta_an^2-15*eta_an+10))'
    vars = 'delta r0  cgbubinit cgmatrixinit'
    vals = '0.321 15  0.2714    1.01e-31'
  [../]
[]



[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    generate_output = 'hydrostatic_stress stress_xx stress_yy stress_zz'
  [../]
[]

[Kernels]
  # enforce cg = (1-h(eta))*cgm + h(eta)*cgb
  [./PhaseConc_g]
    type = KKSPhaseConcentration
    ca       = cgm
    variable = cgb
    c        = cg
    eta      = eta
  [../]

  # enforce cv = (1-h(eta))*cvm + h(eta)*cvb
  [./PhaseConc_v]
    type = KKSPhaseConcentration
    ca       = cvm
    variable = cvb
    c        = cv
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotVacancies]
    type = KKSPhaseChemicalPotential
    variable = cvm
    cb       = cvb
    fa_name  = f_total_matrix
    fb_name  = f_total_bub
    args_a = 'cgm'
    args_b = 'cgb'
  [../]
  [./ChemPotGas]
    type = KKSPhaseChemicalPotential
    variable = cgm
    cb       = cgb
    fa_name  = f_total_matrix
    fb_name  = f_total_bub
    args_a = 'cvm'
    args_b = 'cvb'
  [../]

  #
  # Cahn-Hilliard Equations
  #
  [./CHBulk_g]
    type = KKSSplitCHCRes
    variable = cg
    ca       = cgm
    fa_name  = f_total_matrix
    w        = wg
    args_a   = 'cvm'
  [../]
  [./CHBulk_v]
    type = KKSSplitCHCRes
    variable = cv
    ca       = cvm
    fa_name  = f_total_matrix
    w        = wv
    args_a   = 'cgm'
  [../]

  [./dcgdt]
    type = CoupledTimeDerivative
    variable = wg
    v = cg
  [../]
  [./dcvdt]
    type = CoupledTimeDerivative
    variable = wv
    v = cv
  [../]

  [./wgkernel]
    type = SplitCHWRes
    mob_name = M
    variable = wg
  [../]
  [./wvkernel]
    type = SplitCHWRes
    mob_name = M
    variable = wv
  [../]

  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = f_total_matrix
    fb_name  = f_total_bub
    w        = 0.356
    args = 'cvm cvb cgm cgb'
  [../]
  [./ACBulkCv]
    type = KKSACBulkC
    variable = eta
    ca       = cvm
    cb       = cvb
    fa_name  = f_total_matrix
    args     = 'cgm'
  [../]
  [./ACBulkCg]
    type = KKSACBulkC
    variable = eta
    ca       = cgm
    cb       = cgb
    fa_name  = f_total_matrix
    args     = 'cvm'
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = kappa
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[Materials]
  # Chemical free energy of the matrix
  [./fm]
    type = DerivativeParsedMaterial
    f_name = fm
    args = 'cvm cgm'
    material_property_names = 'kvmatrix kgmatrix cvmatrixeq cgmatrixeq'
    function = '0.5*kvmatrix*(cvm-cvmatrixeq)^2 + 0.5*kgmatrix*(cgm-cgmatrixeq)^2'
  [../]
# Elastic energy of the matrix
  [./elastic_free_energy_m]
    type = ElasticEnergyMaterial
    base_name = matrix
    f_name = fe_m
    args = ' '
  [../]
# Total free energy of the matrix
  [./Total_energy_matrix]
    type = DerivativeSumMaterial
    f_name = f_total_matrix
    sum_materials = 'fm fe_m'
    args = 'cvm cgm'
  [../]

  # Free energy of the bubble phase
  [./fb]
    type = DerivativeParsedMaterial
    f_name = fb
    args = 'cvb cgb'
    material_property_names = 'kToverV nQ Va b f0 kpen kgbub kvbub cvbubeq cgbubeq'
    function = '0.5*kgbub*(cvb-cvbubeq)^2 + 0.5*kvbub*(cgb-cgbubeq)^2'
  [../]

# Elastic energy of the bubble
  [./elastic_free_energy_p]
    type = ElasticEnergyMaterial
    base_name = bub
    f_name = fe_b
    args = ' '
  [../]

# Total free energy of the bubble
  [./Total_energy_bub]
    type = DerivativeSumMaterial
    f_name = f_total_bub
    sum_materials = 'fb fe_b'
    # sum_materials = 'fb'
    args = 'cvb cgb'
  [../]

  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'M   L   kappa  Va      kvmatrix  kgmatrix  kgbub kvbub f0      kpen  cvbubeq cgbubeq b      T'
    prop_values = '0.7 0.7 0.0368 0.03629 223.16    223.16    2.23  2.23  0.0224  1.0   0.6076  0.3924  0.085  800'
  [../]
  [./cvmatrixeq]
    type = ParsedMaterial
    f_name = cvmatrixeq
    material_property_names = 'T'
    constant_names        = 'kB           Efv'
    constant_expressions  = '8.6173324e-5 1.69'
    function = 'exp(-Efv/(kB*T))'
  [../]
  [./cgmatrixeq]
    type = ParsedMaterial
    f_name = cgmatrixeq
    material_property_names = 'T'
    constant_names        = 'kB           Efg'
    constant_expressions  = '8.6173324e-5 4.92'
    function = 'exp(-Efg/(kB*T))'
  [../]
  [./kToverV]
    type = ParsedMaterial
    f_name = kToverV
    material_property_names = 'T Va'
    constant_names        = 'k          C44dim' #k in J/K and dimensional C44 in J/m^3
    constant_expressions  = '1.38e-23   63e9'
    function = 'k*T*1e27/Va/C44dim'
  [../]
  [./nQ]
    type = ParsedMaterial
    f_name = nQ
    material_property_names = 'T'
    constant_names        = 'k          Pi      M         hbar' #k in J/K, M is Xe atomic mass in kg, hbar in J s
    constant_expressions  = '1.38e-23   3.14159 2.18e-25  1.05459e-34'
    function = '(M*k*T/2/Pi/hbar^2)^1.5 * 1e-27' #1e-27 converts from #/m^3 to #/nm^3
  [../]

  #Mechanical properties
  [./Stiffness_matrix]
    type = ComputeElasticityTensor
    C_ijkl = '0.778 0.7935'
    fill_method = symmetric_isotropic
    base_name = matrix
  [../]
  [./Stiffness_bub]
    type = ComputeElasticityTensor
    C_ijkl = '0.0778 0.07935'
    fill_method = symmetric_isotropic
    base_name = bub
  [../]
  [./strain_matrix]
    type = ComputeRSphericalSmallStrain
    base_name = matrix
  [../]
  [./strain_bub]
    type = ComputeRSphericalSmallStrain
    base_name = bub
  [../]
  [./stress_matrix]
    type = ComputeLinearElasticStress
    base_name = matrix
  [../]
  [./stress_bub]
    type = ComputeLinearElasticStress
    base_name = bub
  [../]
  [./global_stress]
    type = TwoPhaseStressMaterial
    base_A = matrix
    base_B = bub
  [../]
  [./surface_tension]
    type = ComputeSurfaceTensionKKS
    v = eta
    kappa_name = kappa
    w = 0.356
  [../]
  [./gas_pressure]
    type = ComputeExtraStressVDWGas
    T = T
    b = b
    cg = cgb
    Va = Va
    nondim_factor = 63e9
    base_name = bub
    outputs = exodus
  [../]
[]

[BCs]
  [./left_r]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
[]

[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       lu            nonzero'

  l_max_its = 30
  nl_max_its = 15
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1e-11
  num_steps = 2
  dt = 0.5
[]

[Outputs]
  exodus = true
[]

test/tests/interfacekernels/1d_interface/reaction_1D_transient.i

# Transient-state test for the InterfaceReaction kernel.
#
# Same to steady-state, except the following
#
# Natural BCs are applied (i.e. NewmannBC h=0 at left and right)

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 1
    nx = 10
    xmax = 2
  []
  [./subdomain1]
    input = gen
    type = SubdomainBoundingBoxGenerator
    bottom_left = '1.0 0 0'
    block_id = 1
    top_right = '2.0 1.0 0'
  [../]
  [./interface]
    type = SideSetsBetweenSubdomainsGenerator
    input = 'subdomain1'
    master_block = '0'
    paired_block = '1'
    new_boundary = 'master0_interface'
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    block = '0'
  [../]
  [./v]
    order = FIRST
    family = LAGRANGE
    block = '1'
  [../]
[]

[Kernels]
  [./diff_u]
    type = MatDiffusion
    diffusivity = D
    variable = u
    block = '0'
  [../]
  [./diff_v]
    type = MatDiffusion
    diffusivity = D
    variable = v
    block = '1'
  [../]
  [./diff_u_dt]
    type = TimeDerivative
    variable = u
    block = '0'
  [../]
  [./diff_v_dt]
    type = TimeDerivative
    variable = v
    block = '1'
  [../]
  [./source_u]
    type = BodyForce
    variable = u
    block = '0'
  [../]
[]

[InterfaceKernels]
  [./interface]
    type = InterfaceDiffusion
    variable = u
    neighbor_var = 'v'
    boundary = 'master0_interface'
    D = D
    D_neighbor = D
  [../]
  [./interface_reaction]
    type = InterfaceReaction
    variable = u
    neighbor_var = 'v'
    boundary = 'master0_interface'
    kf = 1 # Forward reaction rate coefficient
    kb = 2 # Backward reaction rate coefficient
  [../]
[]

[Materials]
  [./block0]
    type = GenericConstantMaterial
    block = '0'
    prop_names = 'D'
    prop_values = '4'
  [../]
  [./block1]
    type = GenericConstantMaterial
    block = '1'
    prop_names = 'D'
    prop_values = '2'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = NEWTON
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
[]

[Debug]
  show_var_residual_norms = true
[]

modules/combined/test/tests/simple_contact/simple_contact_test.i

# Note: Run merged.i to generate a solution to compare to that doesn't use contact.

[Mesh]
  file = contact.e
  # PETSc < 3.5.0 requires the iteration patch_update_strategy to
  # avoid PenetrationLocator warnings, which are currently treated as
  # errors by the TestHarness.
  patch_update_strategy = 'iteration'
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx'
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e5
    formulation = kinematic
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]

  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'

  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/chemical_reactions/test/tests/desorption/langmuir_jac_ad.i

# testing adsorption jacobian
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[Variables]
  [./pressure]
  [../]
  [./conc]
  [../]
[]

[ICs]
  [./p_ic]
    type = RandomIC
    variable = pressure
    min = 0
    max = 1
  [../]
  [./conc_ic]
    type = RandomIC
    variable = conc
    min = -1
    max = 1
  [../]
[]


[Kernels]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    variable = conc
    pressure_var = pressure
  [../]
  [./flux_to_porespace]
    type = DesorptionToPorespace
    variable = pressure
    conc_var = conc
  [../]
[]

[Materials]
  [./langmuir_params]
    type = LangmuirMaterial
    block = 0
    one_over_desorption_time_const = 0
    one_over_adsorption_time_const = 0.813
    langmuir_density = 2.34
    langmuir_pressure = 1.5
    conc_var = conc
    pressure_var = pressure
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = langmuir_jac1
[]

modules/porous_flow/test/tests/jacobian/desorped_mass01.i

# 1phase
# vanGenuchten, constant-bulk density, HM porosity, 1component, unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pp]
  [../]
  [./conc]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
  [./pp]
    type = RandomIC
    variable = pp
    min = -1
    max = 1
  [../]
  [./conc]
    type = RandomIC
    variable = conc
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./conc]
    type = PorousFlowDesorpedMassTimeDerivative
    conc_var = conc
    variable = conc
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp disp_x disp_y disp_z conc'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.1
    biot_coefficient = 0.5
    solid_bulk = 1
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/combined/test/tests/multiphase_mechanics/elasticenergymaterial.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  nz = 0
  xmax = 250
  ymax = 250
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./c]
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 125.0
      y1 = 125.0
      radius = 60.0
      invalue = 1.0
      outvalue = 0.1
      int_width = 50.0
    [../]
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./left]
    type = DirichletBC
    boundary = left
    variable = disp_x
    value = 0.0
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
  [./dummy]
    type = MatDiffusion
    variable = c
    diffusivity = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric9
    C_ijkl = '3 1 1 3 1 3 1 1 1 '
  [../]
  [./strain]
    type = ComputeSmallStrain
    eigenstrain_names = eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./prefactor]
    type = DerivativeParsedMaterial
    args = c
    f_name = prefactor
    constant_names       = 'epsilon0 c0'
    constant_expressions = '0.05     0'
    function = '(c - c0) * epsilon0'
  [../]
  [./eigenstrain]
    type = ComputeVariableEigenstrain
    eigen_base = '1'
    args = c
    prefactor = prefactor
    eigenstrain_name = eigenstrain
  [../]

  [./elasticenergy]
    type = ElasticEnergyMaterial
    args = 'c'
    outputs = exodus
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  nl_abs_tol = 1e-10
  num_steps = 1

  petsc_options_iname = '-pc_factor_shift_type'
  petsc_options_value = 'nonzero'
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/reconstruction/2phase_reconstruction3.i

#
# In this test , which is set up similarly to 2phase_reconstruction_test2.i
# we demonstrate that the feature numbers in the EBSD file can be chosen arbitrarily.
# There is no need for then to start at a certain index or even to be contiguous!
# The EBSDReaderPointDataAux AuxKernel outputs the original feature IDs (grain numbers)
#

[Problem]
  type = FEProblem
  solve = false
  kernel_coverage_check = false
[]

[Mesh]
  type = EBSDMesh
  filename = Renumbered.txt
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[UserObjects]
  [./ebsd_reader]
    type = EBSDReader
  [../]
  [./ebsd]
    type = PolycrystalEBSD
    coloring_algorithm = bt
    ebsd_reader = ebsd_reader
    phase = 1
    output_adjacency_matrix = true
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = ebsd
    [../]
  [../]
[]

[AuxVariables]
  [./GRAIN]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./grain_aux]
    type = EBSDReaderPointDataAux
    variable = GRAIN
    ebsd_reader = ebsd_reader
    data_name = 'feature_id'
    execute_on = 'initial'
  [../]
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  exodus = true
[]

test/tests/materials/ad_material/ad_stateful_material.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 2
[]

[Variables]
  [./u]
    initial_condition = 1
  [../]
[]

[Kernels]
  [./diff]
    type = ADMatDiffusionTest
    variable = u
    prop_to_use = 'AdAd'
    ad_mat_prop = 'diffusivity'
    regular_mat_prop = 'unused_diffusivity'
  [../]
[]

[Kernels]
  [./force]
    type = BodyForce
    variable = u
    value = 1
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./constant_material]
    type = GenericConstantMaterial
    prop_names = 'unused_diffusivity'
    prop_values = '0'
  [../]
  [./ad_stateful]
    type = ADStatefulMaterial
    u = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  line_search = 'none'

  solve_type = 'Newton'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  l_tol = 1e-10
  nl_rel_tol = 1e-9
[]

[Outputs]
  [./exodus]
    type = Exodus
    show_material_properties = 'diffusivity'
  [../]
[]

modules/stochastic_tools/test/tests/transfers/sampler_postprocessor/master.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = SobolSampler
    num_rows = 3
    distributions = 'uniform_left uniform_right'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
    execute_on = 'INITIAL TIMESTEP_BEGIN'
  []
[]

[Transfers]
  [runner]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
    execute_on = INITIAL
    check_multiapp_execute_on = false
  []
  [data]
    type = SamplerPostprocessorTransfer
    multi_app = sub
    sampler = sample
    to_vector_postprocessor = storage
    from_postprocessor = avg
    execute_on = TIMESTEP_BEGIN
    check_multiapp_execute_on = false
  []
[]

[VectorPostprocessors]
  [storage]
    type = StochasticResults
    samplers = sample
    execute_on = 'INITIAL TIMESTEP_END'
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/check_error/num_constants.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = cube.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 1e6
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/combined/test/tests/glued_contact/sm/glued_contact_test_sm.i

[Mesh]
  file = glued_contact_test.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.5001'
  [../]

  [./lateral]
    type = PiecewiseLinear
    x = '0 1 2 3'
    y = '0 0 1 0'
    scale_factor = 0.5
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = glued
    formulation = kinematic
    system = Constraint
  [../]
[]

[BCs]
  [./bottom_lateral]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = lateral
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = up
  [../]

  [./bottom_out]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'ilu      101'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-8
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 10
  dt = 0.1
  num_steps = 30

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Postprocessors]
  active = ''
  [./resid]
    type = Residual
  [../]
  [./iters]
    type = NumNonlinearIterations
  [../]
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/transfers/multiapp_projection_transfer/fromsub_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  ymin = 0
  xmax = 9
  ymax = 9
  nx = 9
  ny = 9
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [v_nodal]
  []
  [v_elemental]
    order = CONSTANT
    family = MONOMIAL
  []
  [x_nodal]
  []
  [x_elemental]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  solve_type = 'NEWTON'
[]

[Outputs]
  [out]
    type = Exodus
    elemental_as_nodal = true
  []
[]

[MultiApps]
  [sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '1 1 0 5 5 0'
    input_files = fromsub_sub.i
  []
[]

[Transfers]
  [v_nodal_tr]
    type = MultiAppProjectionTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v_nodal
  []
  [v_elemental_tr]
    type = MultiAppProjectionTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v_elemental
  []
  [x_elemental_tr]
    type = MultiAppProjectionTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = x
    variable = x_elemental
  []
  [x_nodal_tr]
    type = MultiAppProjectionTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = x
    variable = x_nodal
  []
[]

modules/tensor_mechanics/test/tests/scalar_material_damage/combined_scalar_damage.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
[]

[AuxVariables]
  [damage_index]
    order = CONSTANT
    family = MONOMIAL
  []
  [damage_index_a]
    order = CONSTANT
    family = MONOMIAL
  []
  [damage_index_b]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[Modules/TensorMechanics/Master]
  [all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_xx strain_xx'
  []
[]

[AuxKernels]
  [damage_index]
    type = MaterialRealAux
    variable = damage_index
    property = damage_index
    execute_on = timestep_end
  []
  [damage_index_a]
    type = MaterialRealAux
    variable = damage_index_a
    property = damage_index_a
    execute_on = timestep_end
  []
  [damage_index_b]
    type = MaterialRealAux
    variable = damage_index_b
    property = damage_index_b
    execute_on = timestep_end
  []
[]

[BCs]
  [symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  []
  [symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  []
  [symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  []
  [axial_load]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.01
  []
[]

[Functions]
  [damage_evolution_a]
    type = PiecewiseLinear
    xy_data = '0.0   0.0
               0.1   0.0
               2.1   2.0'
  []
  [damage_evolution_b]
    type = PiecewiseLinear
    xy_data = '0.0   0.2
               0.1   0.2
               2.1   0.7'
  []
[]

[Materials]
  [damage_index_a]
    type = GenericFunctionMaterial
    prop_names = damage_index_prop_a
    prop_values = damage_evolution_a
  []
  [damage_index_b]
    type = GenericFunctionMaterial
    prop_names = damage_index_prop_b
    prop_values = damage_evolution_b
  []
  [damage_a]
    type = ScalarMaterialDamage
    damage_index = damage_index_prop_a
    damage_index_name = damage_index_a
  []
  [damage_b]
    type = ScalarMaterialDamage
    damage_index = damage_index_prop_b
    damage_index_name = damage_index_b
  []
  [damage]
    type = CombinedScalarDamage
    damage_models = 'damage_a damage_b'
  []
  [stress]
    type = ComputeDamageStress
    damage_model = damage
  []
  [elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.2
    youngs_modulus = 10e9
  []
[]

[Postprocessors]
  [stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  []
  [strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  []
  [damage_index]
    type = ElementAverageValue
    variable = damage_index
  []
  [damage_index_a]
    type = ElementAverageValue
    variable = damage_index_a
  []
  [damage_index_b]
    type = ElementAverageValue
    variable = damage_index_b
  []
[]

[Executioner]
  type = Transient

  l_max_its  = 50
  l_tol      = 1e-8
  nl_max_its = 20
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-8

  dt = 0.1
  dtmin = 0.1
  end_time = 1.1
[]

[Outputs]
  csv=true
[]

modules/combined/test/tests/power_law_creep/creep_only_combined_class_sm2.i

#
# Simple power law creep example (without instantaneous plasticity)
# NOTE: this test is not replicated in a direct tensor mechanics form because the functioning
#   of the individual TM power law creep and TM isotropic plasticity is already tested in the
#   tensor mechanics module.
#
# The mesh is a 1x1x1 cube with a constant pressure of 10 MPa on the top face.
#   Symmetry boundary conditions on three planes provide a uniaxial stress
#   field. The temperature is held constant at 1000. The yield stress is set
#   at twice the load pressure, thus there is no plasticity.  The solution is
#   advanced through ten time steps of 0.1 for a total time of 1.
#
#   The total strain at time 1 can be computed as:
#
#    e_tot = e_elas + e_creep
#
#           = P/E   + A * sigma**n * exp(-Q/(RT)) * t**m * dt
#
#              where P = pressure load
#                    E = Young's modulus
#                    A = material parameter
#                    sigma = stress
#                    n = power law exponent
#                    Q = activation energy
#               R = gas constant
#                    T = temperature
#                    t = time
#                    m = time hardening exponent
#                    dt = problem time
#
# For this test, the analytical solutuon is:
#
#   e_tot = (10e6/2e11) + 1e-15 * (10e6)**4 * exp(-3e5/(8.3143*1000) * t**0 * 1
#         = 5e-5        + 2.136031e-3
#         = 2.186031e-3
#
#
#  For either linear (formulation = linear) or nonlinear (formulation = nonlinear3d)
#    kinematics, PLC_LSH gets:
#
#  e_elas = 5e-5
#  e_creep = 2.13600e-3
#  e_tot = 2.18600e-3
#
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'x_disp y_disp z_disp'
[]

[Variables]
  [./x_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./y_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./z_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./creep_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear

    x = '0 1'
    y = '1 1'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = x_disp
    disp_y = y_disp
    disp_z = z_disp
  [../]
[]

[Kernels]
  [./solid_x_ie]
    type = SolidMechImplicitEuler
    variable = x_disp
  [../]

  [./solid_y_ie]
    type = SolidMechImplicitEuler
    variable = y_disp
  [../]

  [./solid_z_ie]
    type = SolidMechImplicitEuler
    variable = z_disp
  [../]

  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]
[]


[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./creep_strain_xx]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_xx
    index = 0
  [../]

  [./creep_strain_yy]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_yy
    index = 1
  [../]


  [./creep_strain_zz]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_zz
    index = 2
  [../]

  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]

 []


[BCs]
  [./u_top_pull]
    type = Pressure
    variable = y_disp
    component = 1
    boundary = top
    factor = -10.0e6
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = y_disp
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = x_disp
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'top bottom'
    value = 1000.0
  [../]
[]

[Materials]

  [./fred]
    type = SolidModel
    block = 0
    youngs_modulus = 2.e11
    poissons_ratio = .3
    disp_x = x_disp
    disp_y = y_disp
    disp_z = z_disp
    temp = temp
    formulation = nonlinear3d
    constitutive_model = creep
  [../]
  [./creep]
    type = PowerLawCreepModel
    block = 0
    coefficient = 1.0e-15
    n_exponent = 4
    m_exponent = 0
    activation_energy = 3.0e5
    temp = temp
  [../]

  [./thermal]
    type = HeatConductionMaterial
    block = 0
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]

  [./density]
    type = Density
    block = 0
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'


  l_max_its = 10
  nl_max_its = 10
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.0
  num_steps = 10
  dt = 0.1
[]

[Outputs]
  file_base = creep_only_combined_class_sm_out
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/actions/grain_growth_with_T_grad.i

#
# This test ensures that a flat grain boundary does not move
# under a temperature gradient using the normal grain growth model
#
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 20
  xmax = 1000
  ymax = 500
  elem_type = QUAD
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Modules]
  [./PhaseField]
    [./GrainGrowth]
      args = T
      variable_mobility = true
    [../]
  [../]
[]


[Functions]
  [./TGradient]
    type = ParsedFunction
    value = '450 + 0.1*x'
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalBoundingBoxIC]
      x1 = 0.0
      x2 = 500.0
      y1 = 0.0
      y2 = 500.0
    [../]
  [../]
[]

[AuxVariables]
  [./T]
  [../]
[]

[AuxKernels]
  [./Tgrad]
    type = FunctionAux
    variable = T
    function = TGradient
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = T # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 # m^4/(Js) from Schoenfelder 1997
    Q = 0.23 # Migration energy in eV
    GBenergy = 0.708 # GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./gr0_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr0
    execute_on = 'initial TIMESTEP_END'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 10
  dt = 100.0
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/buckley_leverett/bl01.i

# Buckley-Leverett 1-phase.
# The front starts at (around) x=5, and at t=50 it should
# have moved to x=9.6.  The version below has a nonzero
# suction function, and at t=50, the front sits between
# (about) x=9.6 and x=9.9.  Changing the van-Genuchten
# al parameter to 1E-4 softens the front so it sits between
# (about) x=9.7 and x=10.4, and the simulation runs much faster.
# With al=1E-2 and nx=600, the front sits between x=9.6 and x=9.8,
# but takes about 100 times longer to run.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 150
  xmin = 0
  xmax = 15
[]

[GlobalParams]
  PorousFlowDictator = dictator
  compute_enthalpy = false
  compute_internal_energy = false
[]

[Variables]
  [./pp]
    [./InitialCondition]
      type = FunctionIC
      function = 'max((1000000-x/5*1000000)-20000,-20000)'
    [../]
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
    gravity = '0 0 0'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = pp
    boundary = left
    value = 980000
  [../]
[]

[AuxVariables]
  [./sat]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./sat]
    type = MaterialStdVectorAux
    variable = sat
    execute_on = timestep_end
    index = 0
    property = PorousFlow_saturation_qp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1e-3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e6
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.15
  [../]
[]

[Preconditioning]
  active = andy
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres bjacobi 1E-10 1E-10 20'
  [../]
[]

[Functions]
  [./timestepper]
    type = PiecewiseLinear
    x = '0    0.01 0.1 1   1.5 2   20  30  40  50'
    y = '0.01 0.1  0.2 0.3 0.1 0.3 0.3 0.4 0.4 0.5'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 50
  [./TimeStepper]
    type = FunctionDT
    function = timestepper
  [../]
[]

[VectorPostprocessors]
  [./pp]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '15 0 0'
    num_points = 150
    sort_by = x
    variable = pp
  [../]
  [./sat]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '15 0 0'
    num_points = 150
    sort_by = x
    variable = sat
  [../]
[]


[Outputs]
  file_base = bl01
  [./csv]
    type = CSV
    sync_only = true
    sync_times = '0.01 50'
  [../]
  [./exodus]
    type = Exodus
    execute_on = 'initial final'
  [../]
[]

modules/solid_mechanics/test/tests/cracking/cracking_xyz.i

#
# Test to exercise the exponential stress release
#
# First x, then y, then z directions crack
#

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = cracking_test.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]

  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

[]

[AuxVariables]
  [./crack_1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./crack_2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./crack_3]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Functions]
  [./displx]
    type = PiecewiseLinear
#   x = '0 1'
#   y = '0 .0035'
    x = '0 1'
    y = '0 0.00175'
  [../]
  [./velocity_y]
    type = ParsedFunction
    value = 'if(t < 2, 0.00175, 0)'
  [../]
  [./velocity_z]
    type = ParsedFunction
    value = 0.00175
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]
  [./crack_1]
    type = MaterialRealVectorValueAux
    variable = crack_1
    property = crack_flags
    component = 0
  [../]
  [./crack_2]
    type = MaterialRealVectorValueAux
    variable = crack_2
    property = crack_flags
    component = 1
  [../]
  [./crack_3]
    type = MaterialRealVectorValueAux
    variable = crack_3
    property = crack_flags
    component = 2
  [../]

  [./strain_xx]
    type = MaterialTensorAux
    variable = strain_xx
    tensor = total_strain
    index = 0
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    variable = strain_yy
    tensor = total_strain
    index = 1
  [../]
  [./strain_zz]
    type = MaterialTensorAux
    variable = strain_zz
    tensor = total_strain
    index = 2
  [../]

  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    tensor = stress
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    variable = stress_zz
    tensor = stress
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    variable = stress_xy
    tensor = stress
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    variable = stress_yz
    tensor = stress
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    variable = stress_zx
    tensor = stress
    index = 5
  [../]
[]


[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./move_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = displx
  [../]

  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./move_y]
    type = PresetVelocity
    variable = disp_y
    boundary = 5
    function = velocity_y
#    time_periods = 'p2 p3'
  [../]

  [./fix_z]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]
  [./move_z]
    type = PresetVelocity
    variable = disp_z
    boundary = 6
    function = velocity_z
#    time_periods = 'p3'
  [../]
[]

[Materials]
  [./fred]
    type = Elastic
    block = 1
    youngs_modulus = 186.5e9
    poissons_ratio = .316
    cracking_stress = 119.3e6
    cracking_release = exponential

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    formulation = linear
  [../]
[]

#[Preconditioning]
#  [./SMP]
#    type = SMP
#    full = true
#  []
#[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



  petsc_options_iname = '-ksp_gmres_restart -pc_type'
  petsc_options_value = '101                lu'


  line_search = 'none'


  l_max_its = 100
  l_tol = 1e-6

  nl_max_its = 100
  nl_abs_tol = 4e-8
  #nl_rel_tol = 1e-3
  nl_rel_tol = 1e-6

  start_time = 0.0
  end_time = 3.0
#  dt = 0.005
  dt = 0.01
[]

[Controls]
  [./p1]
    type = TimePeriod
    start_time = 0.0
    end_time = 1.0
    disable_objects = 'BCs/move_y BCs/move_z'
    reverse_on_false = false
    execute_on = 'initial timestep_begin'
  [../]

  [./p2]
    type = TimePeriod
    start_time = 1.0
    end_time = 2.0
    disable_objects = 'BCs/move_z'
    enable_objects = 'BCs/move_y'
    reverse_on_false = false
    execute_on = 'initial timestep_begin'
  [../]

  [./p3]
    type = TimePeriod
    start_time = 2.0
    end_time = 3.0
    enable_objects = 'BCs/move_y BCs/move_z'
    reverse_on_false = false
    execute_on = 'initial timestep_begin'
    set_sync_times = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/generalized_plane_strain/planestrain_prescribed.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = square.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./scalar_strain_zz]
    family = SCALAR
    order = FIRST
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./aux_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegralSM
    tensor = stress
    index = 2
    use_displaced_mesh = true
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    temp = temp
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]

  [./strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xx
    index = 0
  [../]
  [./strain_xy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xy
    index = 3
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_yy
    index = 1
  [../]
  [./strain_zz]
    type = MaterialTensorAux
    tensor = total_strain
    variable = aux_strain_zz
    index = 2
  [../]
[]

[AuxScalarKernels]
  [./scalar_strain_zz]
    type = FunctionScalarAux
    variable = scalar_strain_zz
    function = scalar_strain_zz
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0     1  100'
    y='0  0.00 0.00'
  [../]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
  [./scalar_strain_zz]
    type = PiecewiseLinear
    xy_data = '0 0
               1 7.901e-5
               2 1.103021e-2'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    thermal_expansion = 0.02
    stress_free_temperature = 0.5
    temp = temp
    formulation = PlaneStrain
    scalar_strain_zz = scalar_strain_zz
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none


# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial2_planar.i

# same as uni_axial2 but with planar mohr-coulomb
[Mesh]
  type = FileMesh
  file = quarter_hole.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./zmin_zzero]
    type = DirichletBC
    variable = disp_z
    boundary = 'zmin'
    value = '0'
  [../]
  [./xmin_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = 'xmin'
    value = '0'
  [../]
  [./ymin_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = 'ymin'
    value = '0'
  [../]
  [./ymax_disp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'ymax'
    function = '-1E-4*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E7
  [../]
  [./fric]
    type = TensorMechanicsHardeningConstant
    value = 2
    convert_to_radians = true
  [../]
  [./dil]
    type = TensorMechanicsHardeningConstant
    value = 2
    convert_to_radians = true
  [../]

  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = coh
    friction_angle = fric
    dilation_angle = dil
    yield_function_tolerance = 1.0 # THIS IS HIGHER THAN THE SMOOTH CASE TO AVOID PRECISION-LOSS PROBLEMS!
    shift = 1.0
    internal_constraint_tolerance = 1E-9
    use_custom_returnMap = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 1
    fill_method = symmetric_isotropic
    C_ijkl = '0 5E9' # young = 10Gpa, poisson = 0.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 1
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 1
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    max_NR_iterations = 100
    deactivation_scheme = 'safe'
    min_stepsize = 1
    max_stepsize_for_dumb = 1
    debug_fspb = crash
  [../]
[]

# Preconditioning and Executioner options kindly provided by Andrea
[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]


[Executioner]
  end_time = 0.5
  dt = 0.1
  solve_type = NEWTON
  type = Transient
[]


[Outputs]
  file_base = uni_axial2_planar
  [./exodus]
    type = Exodus
    hide = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz yield_fcn s_xx s_xy s_xz s_yy s_yz s_zz f'
  [../]
  [./csv]
    type = CSV
    interval = 1
  [../]
[]

test/tests/multiapps/picard_sub_cycling/picard_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
  [./td_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/frictionless_kinematic.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the kinematic method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2. The gold file is run
#  on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm     lu    20    101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+6
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/xfem/test/tests/second_order_elements/sm/square_branch_quad9_2d.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
  volumetric_locking_correction = false
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD9
  displacements = 'disp_x disp_y'
[]

[UserObjects]
  [./line_seg_cut_set_uo]
    type = LineSegmentCutSetUserObject
    cut_data = '-1.0000e-10   6.6340e-01   6.6340e-01  -1.0000e-10  0.0  1.0
                 3.3120e-01   3.3200e-01   1.0001e+00   3.3200e-01  1.0  2.0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./right_disp_x]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
  [./top_disp_y]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionDirichletBC
    boundary = 1
    variable = disp_x
    function = right_disp_x
  [../]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = top_disp_y
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.2
  num_steps = 5000
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/navier_stokes/test/tests/scalar_adr/supg/2d_advection_error_testing.i

ax=1
ay=1

[GlobalParams]
  u = ${ax}
  v = ${ay}
  p = 0
  tau_type = mod
  transient_term = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  xmax = 1
  ymax = 1
  elem_type = QUAD9
[]

[Variables]
  [./c]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[Kernels]
  [./adv]
    type = Advection
    variable = c
    forcing_func = 'ffn'
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = c
    boundary = 'left right top bottom'
    function = 'c_func'
  [../]
[]

[Materials]
  [./mat]
    type = GenericConstantMaterial
    prop_names = 'mu rho'
    prop_values = '0 1'
  [../]
[]

[Functions]
  [./ffn]
    type = ParsedFunction
    value = '${ax}*(0.14*pi*y*cos(0.2*pi*x*y) + 0.2*pi*cos(0.5*pi*x)) + ${ay}*(0.14*pi*x*cos(0.2*pi*x*y) + 0.4*pi*cos(pi*y))'
  [../]
  [./c_func]
    type = ParsedFunction
    value = '0.4*sin(0.5*pi*x) + 0.4*sin(pi*y) + 0.7*sin(0.2*pi*x*y) + 0.5'
  [../]
  [./cx_func]
    type = ParsedFunction
    value = '0.14*pi*y*cos(0.2*pi*x*y) + 0.2*pi*cos(0.5*pi*x)'
  [../]
[]

# [Executioner]
#   type = Steady
#   petsc_options_iname = '-pc_type -pc_factor_shift_type'
#   petsc_options_value = 'lu NONZERO'
# []

[Executioner]
  type = Transient
  num_steps = 10
  petsc_options = '-snes_converged_reason -ksp_converged_reason -snes_view'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu NONZERO superlu_dist'
  line_search = 'none'
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-12
  nl_max_its = 10
  l_tol = 1e-6
  l_max_its = 10
  [./TimeStepper]
    dt = .05
    type = IterationAdaptiveDT
    cutback_factor = 0.4
    growth_factor = 1.2
    optimal_iterations = 20
  [../]
[]

[Outputs]
  [./exodus]
    type = Exodus
  [../]
  [./csv]
    type = CSV
  [../]
[]

[Postprocessors]
  [./L2c]
    type = ElementL2Error
    variable = c
    function = c_func
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
  [./L2cx]
    type = ElementL2Error
    variable = cx
    function = cx_func
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
[]

[AuxVariables]
  [./cx]
    family = MONOMIAL
    order = FIRST
  [../]
[]

[AuxKernels]
  [./cx_aux]
    type = VariableGradientComponent
    component = x
    variable = cx
    gradient_variable = c
  [../]
[]

modules/tensor_mechanics/test/tests/elem_prop_read_user_object/prop_grain_read_3d.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
  nx = 30
  ny = 30
  nz = 30
[]

[Variables]
  [./disp_x]
    block = 0
  [../]
  [./disp_y]
    block = 0
  [../]
  [./disp_z]
    block = 0
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.05*t
  [../]
[]

[UserObjects]
  [./prop_read]
    type = ElementPropertyReadFile
    prop_file_name = 'input_file.txt'
    nprop = 4
    read_type = grain
    ngrain = 4
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
  [./e_yy]
    type = RankTwoAux
    variable = e_yy
    rank_two_tensor = elastic_strain
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./fix_z]
    type = DirichletBC
    variable = disp_z
    boundary = 'back'
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = tdisp
  [../]
[]

[Materials]
  [./elasticity_tensor_with_Euler]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
    read_prop_user_object = prop_read
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_yy]
    type = ElementAverageValue
    variable = e_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.05
  num_steps = 2
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  file_base = prop_grain_read_3d_out
  exodus = true
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

modules/porous_flow/test/tests/poro_elasticity/pp_generation_fullysat_action.i

# Same as pp_generation.i, but using an Action
#
# A sample is constrained on all sides and its boundaries are
# also impermeable.  Fluid is pumped into the sample via a
# volumetric source (ie kg/second per cubic meter), and the
# rise in porepressure is observed.
#
# Source = s  (units = kg/m^3/second)
#
# Expect:
# fluid_mass = mass0 + s*t
# stress = 0 (remember this is effective stress)
# Porepressure = fluid_bulk*log(fluid_mass_density/density_P0), where fluid_mass_density = fluid_mass*porosity
# porosity = biot+(phi0-biot)*exp(pp(biot-1)/solid_bulk)
#
# Parameters:
# Biot coefficient = 0.3
# Phi0 = 0.1
# Solid Bulk modulus = 2
# fluid_bulk = 13
# density_P0 = 1

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]
[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.0
      bulk_modulus = 13.0
      viscosity = 1.0
      density0 = 1.0
    [../]
  [../]
[]

[PorousFlowFullySaturated]
  coupling_type = HydroMechanical
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  biot_coefficient = 0.3
  gravity = '0 0 0'
  fp = the_simple_fluid
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
[]


[Kernels]
  [./source]
    type = BodyForce
    function = 0.1
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./porosity]
    type = PorousFlowPropertyAux
    variable = porosity
    property = porosity
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.1
    biot_coefficient = 0.3
    solid_bulk = 2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0   0 1 0   0 0 1' # unimportant
  [../]
[]

[Functions]
  [./porosity_analytic]
    type = ParsedFunction
    value = 'biot+(phi0-biot)*exp(pp*(biot-1)/bulk)'
    vars = 'biot phi0 pp bulk'
    vals = '0.3 0.1 p0 2'
  [../]
[]

[Postprocessors]
  [./fluid_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
    use_displaced_mesh = true
  [../]
  [./porosity]
    type = PointValue
    outputs = 'console csv'
    point = '0 0 0'
    variable = porosity
  [../]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./porosity_analytic]
    type = FunctionValuePostprocessor
    function = porosity_analytic
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]

[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = pp_generation_fullysat_action
  csv = true
[]

modules/phase_field/test/tests/actions/conserved_forward_split_1var.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  xmax = 25.0
  ymax = 25.0
  elem_type = QUAD
[]

[Debug]
  show_actions = true
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./c]
        solve_type = FORWARD_SPLIT
        mobility = 1.0
        kappa = kappa_c
        free_energy = F
      [../]
    [../]
  [../]
[]

[ICs]
  [./c_IC]
    type = CrossIC
    variable = c
    x1 = 0.0
    x2 = 25.0
    y1 = 0.0
    y2 = 25.0
  [../]
[]

[AuxVariables]
  [./local_energy]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./local_energy]
    type = TotalFreeEnergy
    variable = local_energy
    f_name = F
    kappa_names = kappa_c
    interfacial_vars = c
  [../]
[]

[Materials]
  [./kappa_c]
    type = GenericConstantMaterial
    prop_names = kappa_c
    prop_values = 2.0
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    args = c
    function = '(1 - c)^2 * (1 + c)^2'
    f_name = F
  [../]
[]

[Postprocessors]
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    variable = local_energy
  [../]
  [./total_c]
    type = ElementIntegralVariablePostprocessor
    variable = c
    execute_on = 'initial TIMESTEP_END'
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 10
  nl_rel_tol = 1.0e-10

  start_time = 0.0
  num_steps = 5
  dt = 0.7
[]

[Outputs]
  perf_graph = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/multi/eight_surface14.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
# SimpleTester3 with a = 0 and b = 1 and strength = 1.1
# SimpleTester4 with a = 1 and b = 0 and strength = 1.1
# SimpleTester5 with a = 1 and b = 1 and strength = 3.1
# SimpleTester6 with a = 1 and b = 2 and strength = 3.1
# SimpleTester7 with a = 2 and b = 1 and strength = 3.1
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 2.1E-6m in y direction and 3E-6 in z direction.
# trial stress_yy = 2.1 and stress_zz = 3.0
#
# This is similar to three_surface14.i, and a description is found there.
# The result should be stress_zz=1=stress_yy, with internal0=2
# and internal1=1.1

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2.1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '3.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f5]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f6]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f7]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int5]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int6]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int7]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./f3]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 3
    variable = f3
  [../]
  [./f4]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 4
    variable = f4
  [../]
  [./f5]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 5
    variable = f5
  [../]
  [./f6]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 6
    variable = f6
  [../]
  [./f7]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 7
    variable = f7
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
  [./int3]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 3
    variable = int3
  [../]
  [./int4]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 4
    variable = int4
  [../]
  [./int5]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 5
    variable = int5
  [../]
  [./int6]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 6
    variable = int6
  [../]
  [./int7]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 7
    variable = int7
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./f3]
    type = PointValue
    point = '0 0 0'
    variable = f3
  [../]
  [./f4]
    type = PointValue
    point = '0 0 0'
    variable = f4
  [../]
  [./f5]
    type = PointValue
    point = '0 0 0'
    variable = f5
  [../]
  [./f6]
    type = PointValue
    point = '0 0 0'
    variable = f6
  [../]
  [./f7]
    type = PointValue
    point = '0 0 0'
    variable = f7
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
  [./int3]
    type = PointValue
    point = '0 0 0'
    variable = int3
  [../]
  [./int4]
    type = PointValue
    point = '0 0 0'
    variable = int4
  [../]
  [./int5]
    type = PointValue
    point = '0 0 0'
    variable = int5
  [../]
  [./int6]
    type = PointValue
    point = '0 0 0'
    variable = int6
  [../]
  [./int7]
    type = PointValue
    point = '0 0 0'
    variable = int7
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple3]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple4]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple5]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple6]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 2
    strength = 3.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple7]
    type = TensorMechanicsPlasticSimpleTester
    a = 2
    b = 1
    strength = 3.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2 simple3 simple4 simple5 simple6 simple7'
    deactivation_scheme = optimized_to_safe
    max_NR_iterations = 4
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1'
    debug_jac_at_intnl = '1 1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = eight_surface14
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/sliding_block/sliding/constraint/frictional_04_penalty.i

#  This is a benchmark test that checks constraint based frictional
#  contact using the penalty method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  A friction coefficient of 0.4 is used.  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]


[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 14.99999
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    friction_coefficient = 0.4
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/tensor_mechanics/test/tests/dynamics/prescribed_displacement/3D_QStatic_1_Ramped_Displacement_ti.i

# One 3D element under ramped displacement loading.
#
# loading:
# time : 0.0 0.1  0.2  0.3
# disp : 0.0 0.0 -0.01 -0.01

# This displacement loading is applied using the PresetDisplacement boundary condition.

# Here, the given displacement time history is converted to an acceleration
# time history using Backward Euler time differentiation. Then, the resulting
# acceleration is integrated using Newmark time integration to obtain a
# displacement time history which is then applied to the boundary.

# This is done because if the displacement is applied using Dirichlet BC, the
# resulting acceleration is very noisy.

# Boundaries:
# x = 0 left
# x = 1 right
# y = 0 bottom
# y = 1 top
# z = 0 back
# z = 1 front

# Result: The displacement at the top node in the z direction should match
# the prescribed displacement. Also, the z acceleration should
# be two triangular pulses, one peaking at 0.1 and another peaking at
# 0.2.


[Mesh]
  type = GeneratedMesh
  dim = 3 # Dimension of the mesh
  nx = 1 # Number of elements in the x direction
  ny = 1 # Number of elements in the y direction
  nz = 1 # Number of elements in the z direction
  xmin = 0.0
  xmax = 1
  ymin = 0.0
  ymax = 1
  zmin = 0.0
  zmax = 1
  allow_renumbering = false # So NodalVariableValue can index by id
[]

[Variables] # variables that are solved
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables] # variables that are calculated for output
  [./accel_x]
  [../]
  [./vel_x]
  [../]
  [./accel_y]
  [../]
  [./vel_y]
  [../]
  [./accel_z]
  [../]
  [./vel_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./DynamicTensorMechanics] # zeta*K*vel + K * disp
    displacements = 'disp_x disp_y disp_z'
    zeta = 0.000025
  [../]
  [./inertia_x] # M*accel + eta*M*vel
    type = InertialForce
    variable = disp_x
    eta = 19.63
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    eta = 19.63
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    eta = 19.63
  [../]
[]

[AuxKernels]
  [./accel_x] # These auxkernels are only to check output
    type = TestNewmarkTI
    displacement = disp_x
    variable = accel_x
    first = false
  [../]
  [./accel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = accel_y
    first = false
  [../]
  [./accel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = accel_z
    first = false
  [../]
  [./vel_x]
    type = TestNewmarkTI
    displacement = disp_x
    variable = vel_x
  [../]
  [./vel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = vel_y
  [../]
  [./vel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = vel_z
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Functions]
  [./displacement_front]
    type = PiecewiseLinear
    data_file = 'displacement.csv'
    format = columns
  [../]
[]

[BCs]
  [./Preset_displacement]
    type = PresetDisplacement
    variable = disp_z
    function = displacement_front
    boundary = front
    beta = 0.25
    velocity = vel_z
    acceleration = accel_z
  [../]
  [./anchor_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./anchor_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./anchor_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    youngs_modulus = 325e6 #Pa
    poissons_ratio = 0.3
    type = ComputeIsotropicElasticityTensor
    block = 0
  [../]
  [./strain]
    #Computes the strain, assuming small strains
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    #Computes the stress, using linear elasticity
    type = ComputeLinearElasticStress
    block = 0
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = density
    prop_values = 2000 #kg/m3
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 3.0
  l_tol = 1e-6
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  dt = 0.1
  timestep_tolerance = 1e-6

  # Time integrator scheme
  scheme = "newmark-beta"
[]

[Postprocessors] # These quantites are printed to a csv file at every time step
  [./_dt]
    type = TimestepSize
  [../]
  [./accel_6x]
    type = NodalVariableValue
    nodeid = 6
    variable = accel_x
  [../]
  [./accel_6y]
    type = NodalVariableValue
    nodeid = 6
    variable = accel_y
  [../]
  [./accel_6z]
    type = NodalVariableValue
    nodeid = 6
    variable = accel_z
  [../]
  [./vel_6x]
    type = NodalVariableValue
    nodeid = 6
    variable = vel_x
  [../]
  [./vel_6y]
    type = NodalVariableValue
    nodeid = 6
    variable = vel_y
  [../]
  [./vel_6z]
    type = NodalVariableValue
    nodeid = 6
    variable = vel_z
  [../]
  [./disp_6x]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_6y]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./disp_6z]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_z
  [../]
[]

[Outputs]
  file_base = "3D_QStatic_1_Ramped_Displacement_out"
  exodus = true
  csv = true
  perf_graph = true
[]

modules/porous_flow/test/tests/actions/basicthm_hm.i

# PorousFlowBasicTHM action with coupling_type = HydroMechanicalGenerator

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 3
    xmax = 10
    ymax = 3
  []
  [./aquifer]
    input = gen
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 1 0'
    top_right = '10 2 0'
  [../]
  [./injection_area]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = 'injection_area'
    normal = '-1 0 0'
    input = 'aquifer'
  [../]
  [./outflow_area]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = 'outflow_area'
    normal = '1 0 0'
    input = 'injection_area'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caprock aquifer'
    input = 'outflow_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y'
  biot_coefficient = 1.0
[]

[Variables]
  [./porepressure]
    initial_condition = 1e6
  [../]
  [./disp_x]
    scaling = 1e-10
  [../]
  [./disp_y]
    scaling = 1e-10
  [../]
[]

[AuxVariables]
  [./temperature]
    initial_condition = 293
  [../]
[]

[PorousFlowBasicTHM]
  porepressure = porepressure
  temperature = temperature
  coupling_type = HydroMechanical
  gravity = '0 0 0'
  fp = simple_fluid
  use_displaced_mesh = false
  add_stress_aux = false
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1.5e6
    boundary = injection_area
  [../]
  [./constant_outflow_porepressure]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = outflow_area
    pt_vals = '0 1e9'
    multipliers = '0 1e9'
    flux_function = 1e-6
    PT_shift = 1e6
  [../]
  [./top_bottom]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'top bottom'
  [../]
  [./right]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = right
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    solid_bulk_compliance = 2e-7
    fluid_bulk_modulus = 1e7
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1e-13 0 0   0 1e-13 0   0 0 1e-13'
  [../]
  [./permeability_caprock]
    type = PorousFlowPermeabilityConst
    block = caprock
    permeability = '1e-15 0 0   0 1e-15 0   0 0 1e-15'
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 5e9
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1e4
  dt = 1e3
  nl_abs_tol = 1e-14
  nl_rel_tol = 1e-14
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/sliding_block/in_and_out/dirac/frictionless_kinematic.i

#  This is a benchmark test that checks Dirac based frictionless
#  contact using the kinematic method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2. The gold file is run
#  on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./constitutive]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  file_base = frictionless_kinematic_out
  interval = 10
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+6
    formulation = kinematic
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cto27.i

# CappedDruckerPrager and CappedWeakPlane, both with all parameters softening/hardening.
# With large tolerance in ComputeMultipleInelasticStress so that only 1 iteration is performed

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 2
    internal_limit = 100
  [../]
  [./cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 5
    value_residual = 3
    internal_limit = 100
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningCubic
    value_0 = 10
    value_residual = 1
    internal_limit = 100
  [../]
  [./phi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.8
    value_residual = 0.4
    internal_limit = 50
  [../]
  [./psi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.4
    value_residual = 0
    internal_limit = 10
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    yield_function_tolerance = 1E-11     # irrelevant here
    internal_constraint_tolerance = 1E-9 # irrelevant here
  [../]
  [./wp_ts]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 100
    rate = 1
  [../]
  [./wp_cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0
    internal_0 = -2
    internal_limit = 0
  [../]
  [./wp_coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 2
    rate = 1
  [../]
  [./wp_tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./wp_tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    lambda = 0.1
    shear_modulus = 1.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6 5 4  5 7 2  4 2 2'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'dp wp'
    relative_tolerance = 1E4
    absolute_tolerance = 2
    tangent_operator = nonlinear
  [../]
  [./dp]
    type = CappedDruckerPragerStressUpdate
    base_name = cdp
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-11
    tip_smoother = 1
    smoothing_tol = 1
  [../]
  [./wp]
    type = CappedWeakPlaneStressUpdate
    base_name = cwp
    cohesion = wp_coh
    tan_friction_angle = wp_tanphi
    tan_dilation_angle = wp_tanpsi
    tensile_strength = wp_ts
    compressive_strength = wp_cs
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-11
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/bcs/periodic/wedge.i

[Mesh]
  file = wedge.e
  uniform_refine = 1
[]

[Functions]
  active = 'tr_x tr_y'

  [./tr_x]
    type = ParsedFunction
    value = -x
  [../]

  [./tr_y]
    type = ParsedFunction
    value = y
  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff forcing dot'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
    x_center = -0.5
    y_center = 3.0
    x_spread = 0.2
    y_spread = 0.2
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  #active = ' '

  [./Periodic]
    [./x]
      primary = 1
      secondary = 2
      transform_func = 'tr_x tr_y'
      inv_transform_func = 'tr_x tr_y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  num_steps = 6
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_wedge
  exodus = true
[]

modules/tensor_mechanics/test/tests/dynamics/rayleigh_damping/rayleigh_hht_ti.i

# Test for rayleigh damping implemented using HHT time integration
#
# The test is for an 1D bar element of  unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# zeta and eta correspond to the stiffness and mass proportional rayleigh damping
# alpha, beta and gamma are HHT time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel + (eta*M+zeta*K)*[(1+alpha)vel-alpha vel_old]
# + alpha*(K*disp - K*disp_old) + K*disp = P(t+alpha dt)*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + eta*density*[(1+alpha)vel-alpha vel_old]
# + zeta*[(1+alpha)*d/dt(Div stress)- alpha*d/dt(Div stress_old)]
# + alpha *(Div stress - Div stress_old) +Div Stress= P(t+alpha dt)
#
# The first two terms on the left are evaluated using the Inertial force kernel
# The next three terms on the left involving zeta and alpha are evaluated using
# the DynamicStressDivergenceTensors Kernel
# The residual due to Pressure is evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure becomes constant.
# Alpha equal to zero will result in Newmark integration.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./DynamicTensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    zeta = 0.1
    alpha = 0.11
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    eta=0.1
    alpha = 0.11
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    eta=0.1
    alpha = 0.11
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    eta = 0.1
    alpha = 0.11
  [../]

[]

[AuxKernels]
  [./accel_x] # These auxkernels are only to check output
    type = TestNewmarkTI
    displacement = disp_x
    variable = accel_x
    first = false
  [../]
  [./accel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = accel_y
    first = false
  [../]
  [./accel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = accel_z
    first = false
  [../]
  [./vel_x]
    type = TestNewmarkTI
    displacement = disp_x
    variable = vel_x
  [../]
  [./vel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = vel_y
  [../]
  [./vel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = vel_z
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 0
    index_j = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = bottom
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
      factor = 1
      alpha  = 0.11
    [../]
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '210e9 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 2
  dt = 0.1

  # Time integrator scheme
  scheme = "newmark-beta"
[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp]
    type = NodalMaxValue
    variable = disp_y
    boundary = bottom
  [../]
  [./vel]
    type = NodalMaxValue
    variable = vel_y
    boundary = bottom
  [../]
  [./accel]
    type = NodalMaxValue
    variable = accel_y
    boundary = bottom
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]
[]

[Outputs]
  file_base = 'rayleigh_hht_out'
  exodus = true
  perf_graph = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/fromsub_displaced_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_sub]
  [../]
  [./elemental_from_sub]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0.48 0 0 -1.01 0 0'
    input_files = fromsub_displaced_sub.i
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = from_sub
    displaced_source_mesh = true
  [../]
  [./elemental_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = elemental_from_sub
    displaced_source_mesh = true
  [../]
[]

modules/level_set/examples/rotating_circle/circle_rotate_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 32
  ny = 32
  uniform_refine = 2
[]

[Variables]
  [./phi]
  [../]
[]

[AuxVariables]
  [./phi_0]
  [../]
  [./marker]
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = phi
  [../]
  [./reinit]
    type = LevelSetOlssonReinitialization
    variable = phi
    phi_0 = phi_0
    epsilon = 0.03
  [../]
[]

[Problem]
  type = LevelSetReinitializationProblem
[]

[UserObjects]
  [./arnold]
    type = LevelSetOlssonTerminator
    tol = 1
    min_steps = 3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  start_time = 0
  num_steps = 100
  nl_abs_tol = 1e-14
  scheme = crank-nicolson
  line_search = none
  petsc_options_iname = '-pc_type -pc_sub_type'
  petsc_options_value = 'asm      ilu'
  dt = 0.003
[]

[Outputs]
[]

modules/phase_field/test/tests/MultiSmoothCircleIC/multismoothcircleIC_test.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 15
  ny = 15
  nz = 15
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 100
  zmin = 0
  zmax = 100
  elem_type = HEX8
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./c]
    type = MultiSmoothCircleIC
    variable = c
    invalue = 1.0
    outvalue = 0.0001
    bubspac = 30.0 # This spacing is from bubble center to bubble center
    numbub = 6
    radius = 10.0
    int_width = 12.0
    radius_variation = 0.2
    radius_variation_type = uniform
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./diff]
    type = MatDiffusion
    variable = c
    diffusivity = D_v
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y z'
    [../]
  [../]
[]

[Materials]
  [./Dv]
    type = GenericConstantMaterial
    prop_names = D_v
    prop_values = 0.074802
  [../]
[]

[Postprocessors]
  [./bubbles]
    type = FeatureFloodCount
    variable = c
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 101 ds'
  l_max_its = 20
  l_tol = 1e-4
  nl_max_its = 20
  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-11
  start_time = 0.0
  num_steps = 1
  dt = 100.0
  [./Adaptivity]
    refine_fraction = .5
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/Time_integration/Newmark_time_integration/sm/Newmark_test_sm.i

# Test for  Newmark time integration
#
# The test is for an 1-D bar element of unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# beta and gamma are Newmark time integration parameters The equation
# of motion in terms of matrices is:
#
# M*accel + K*disp = P*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + Div Stress = P
#
# The first term on the left is evaluated using the Inertial force
# kernel The last term on the left is evaluated using StressDivergence
# Kernel The residual due to Pressure is evaluated using Pressure
# boundary condition
[GlobalParams]
  volumetric_locking_correction = false
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
  [../]
  [./stiffness_x]
    type = StressDivergence
    variable = disp_x
    component = 0
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
  [../]
  [./stiffness_y]
    type = StressDivergence
    variable = disp_y
    component = 1
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
  [../]
  [./stiffness_z]
    type = StressDivergence
    variable = disp_z
    component = 2
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
     type = MaterialTensorAux
     variable = stress_yy
     tensor = stress
     index = 1
  [../]
  [./strain_yy]
     type = MaterialTensorAux
     variable = strain_yy
     tensor = total_strain
     index = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
    boundary = bottom
    function = pressure
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    factor = 1
    [../]
  [../]
[]

[Materials]

  [./constant]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    youngs_modulus = 210e+09
    poissons_ratio = 0
    thermal_expansion = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 2
  dtmax = 0.1
  dtmin = 0.1
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
  [./vel_ic]
    type = PiecewiseLinear
    x = '0.0 0.5 1.0'
    y = '0.1 0.1 0.1'
    scale_factor = 1
  [../]
[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
   [./disp]
     type = NodalMaxValue
     variable = disp_y
     boundary = bottom
   [../]
   [./vel]
     type = NodalMaxValue
     variable = vel_y
     boundary = bottom
   [../]
   [./accel]
     type = NodalMaxValue
     variable = accel_y
     boundary = bottom
   [../]
   [./stress_yy]
      type = ElementAverageValue
      variable = stress_yy
   [../]
   [./strain_yy]
      type = ElementAverageValue
      variable = strain_yy
   [../]

[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/cp_user_object/patch_recovery.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  displacements = 'ux uy'
[]

[Variables]
  [./ux]
  [../]
  [./uy]
  [../]
[]

[AuxVariables]
  [./stress_xx_recovered]
    order = FIRST
    family = LAGRANGE
  [../]
  [./stress_yy_recovered]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx_recovered]
    type = RankTwoAux
    patch_polynomial_order = first
    rank_two_tensor = stress
    variable = stress_xx_recovered
    index_i = 0
    index_j = 0
    execute_on = 'timestep_end'
  [../]
  [./stress_yy_recovered]
    type = RankTwoAux
    patch_polynomial_order = first
    rank_two_tensor = stress
    variable = stress_yy_recovered
    index_i = 1
    index_j = 1
    execute_on = 'timestep_end'
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uy
    boundary = top
    function = tdisp
  [../]
[]

[UserObjects]
  [./slip_rate_gss]
    type = CrystalPlasticitySlipRateGSS
    variable_size = 12
    slip_sys_file_name = input_slip_sys.txt
    num_slip_sys_flowrate_props = 2
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    uo_state_var_name = state_var_gss
  [../]
  [./slip_resistance_gss]
    type = CrystalPlasticitySlipResistanceGSS
    variable_size = 12
    uo_state_var_name = state_var_gss
  [../]
  [./state_var_gss]
    type = CrystalPlasticityStateVariable
    variable_size = 12
    groups = '0 4 8 12'
    group_values = '60.8 60.8 60.8'
    uo_state_var_evol_rate_comp_name = state_var_evol_rate_comp_gss
    scale_factor = 1.0
  [../]
  [./state_var_evol_rate_comp_gss]
    type = CrystalPlasticityStateVarRateComponentGSS
    variable_size = 12
    hprops = '1.0 541.5 109.8 2.5'
    uo_slip_rate_name = slip_rate_gss
    uo_state_var_name = state_var_gss
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainUObasedCP
    stol = 1e-2
    tan_mod_type = exact
    uo_slip_rates = 'slip_rate_gss'
    uo_slip_resistances = 'slip_resistance_gss'
    uo_state_vars = 'state_var_gss'
    uo_state_var_evol_rate_comps = 'state_var_evol_rate_comp_gss'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'ux uy'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.05
  num_steps = 10
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

test/tests/mesh/unique_ids/unique_ids.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[UserObjects]
  [./verify_elem_unique_ids]
    type = VerifyElementUniqueID
  [../]

  [./verify_nodal_unique_ids]
    type = VerifyNodalUniqueID
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform25.i

# Mohr-Coulomb only
# apply equal stretches in x, y and z directions, to observe return to the MC tip
# Because of smoothing, the expected result is around
# Smax = Smid = Smin = 12.9
# The result is not exact because the smoothing is assymetrical.
# This test also employs a very small dilation angle, which makes return
# to the tip quite numerically difficult, so max_NR_iterations has been increased to 100

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 6
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_max]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_mid]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_min]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 1E-4
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1E7
    poissons_ratio = 0.3
  [../]
  [./mc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    smoothing_tol = 5
    yield_function_tol = 1.0E-9
    max_NR_iterations = 100
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform25
  csv = true
[]

modules/combined/test/tests/contact/sm/pressureAugLag_sm.i

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = false
[]

[Mesh]
  file = pressure.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[Contact]
  [./m20_s10]
    master = 20
    slave = 10
    penalty = 1e7
    formulation = augmented_lagrange
    al_penetration_tolerance = 1e-8
    tangential_tolerance = 1e-3
    system = Constraint
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 5
    value = 0.0
  [../]

  [./Pressure]
    [./press]
      boundary = 7
      factor = 1e3
    [../]
  [../]

  [./down]
    type = DirichletBC
    variable = disp_y
    boundary = 8
    value = -2e-3
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
  [./stiffStuff2]
    type = Elastic
    block = 2

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
[]

[Dampers]
  [./limitX]
    type = MaxIncrement
    max_increment = 1e-5
    variable = disp_x
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  #petsc_options_iname = '-pc_type -pc_hypre_type -snes_type -snes_ls -snes_linesearch_type -ksp_gmres_restart'
  #petsc_options_value = 'hypre    boomeramg      ls         basic    basic                    101'
  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-5
  nl_abs_tol = 1e-6

  l_tol = 1e-8

  l_max_its = 100
  nl_max_its = 20
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/check_error/contact_displacements.i

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Contact]
  [./fred]
    master = 1
    slave = 2
    displacements = 'disp_x disp_y disp_z'
    system = Constraint
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/geomsearch/2d_moving_penetration/pl_test4q.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1.e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test4q_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_thermal_expansion_function/instantaneous.i

# This test checks the thermal expansion calculated via a instantaneous thermal expansion coefficient.
# The coefficient is selected so as to result in a 1e-4 strain in the x-axis, and to cross over
# from positive to negative strain.

[Mesh]
  [./gen]
    type = GeneratedMeshGenerator
    dim = 3
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
    use_automatic_differentiation = true
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    function = '1 + t'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ADComputeInstantaneousThermalExpansionFunctionEigenstrain
    thermal_expansion_function = 4e-4
    stress_free_temperature = 1.5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Postprocessors]
  [./disp_x_max]
    type = SideAverageValue
    variable = disp_x
    boundary = right
  [../]
  [./temp_avg]
    type = ElementAverageValue
    variable = temp
  [../]
[]

[Executioner]
  type = Transient

  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/DiffuseCreep/strain_gb_relax.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 2
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);0.1+0.1*v'
    [../]
  [../]
  [./mu]
  [../]
  [./jx]
  [../]
  [./jy]
  [../]
[]

[AuxVariables]
  [./gb]
    family = LAGRANGE
    order  = FIRST
  [../]
  [./strain_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./strain_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./strain_xy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
[]

[Kernels]
  [./conc]
    type = CHSplitConcentration
    variable = c
    mobility = mobility_prop
    chemical_potential_var = mu
  [../]
  [./chempot]
    type = CHSplitChemicalPotential
    variable = mu
    chemical_potential_prop = mu_prop
    c = c
  [../]
  [./flux_x]
    type = CHSplitFlux
    variable = jx
    component = 0
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./flux_y]
    type = CHSplitFlux
    variable = jy
    component = 1
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[AuxKernels]
  [./gb]
    type = FunctionAux
    variable = gb
    function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);v'
  [../]
  [./strain_xx]
    type = RankTwoAux
    variable = strain_xx
    rank_two_tensor = strain
    index_i = 0
    index_j = 0
  [../]
  [./strain_yy]
    type = RankTwoAux
    variable = strain_yy
    rank_two_tensor = strain
    index_i = 1
    index_j = 1
  [../]
  [./strain_xy]
    type = RankTwoAux
    variable = strain_xy
    rank_two_tensor = strain
    index_i = 0
    index_j = 1
  [../]
[]

[Materials]
  [./chemical_potential]
    type = DerivativeParsedMaterial
    block = 0
    f_name = mu_prop
    args = c
    function = 'c'
    derivative_order = 1
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    function = 'c*(1.0-c)'
    args = c
    f_name = var_dep
    derivative_order = 1
  [../]
  [./mobility]
    type = CompositeMobilityTensor
    block = 0
    M_name = mobility_prop
    tensors = diffusivity
    weights = var_dep
    args = c
  [../]
  [./phase_normal]
    type = PhaseNormalTensor
    phase = gb
    normal_tensor_name = gb_normal
  [../]
  [./aniso_tensor]
    type = GBDependentAnisotropicTensor
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = aniso_tensor
  [../]
  [./diffusivity]
    type = GBDependentDiffusivity
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = diffusivity
  [../]
  [./gb_relax_prefactor]
    type = DerivativeParsedMaterial
    block = 0
    function = '0.01*(c-0.15)*gb'
    args = 'c gb'
    f_name = gb_relax_prefactor
    derivative_order = 1
  [../]
  [./gb_relax]
    type = GBRelaxationStrainIncrement
    property_name = gb_relax
    prefactor_name = gb_relax_prefactor
    gb_normal_name = gb_normal
  [../]
  [./strain]
    type = SumTensorIncrements
    tensor_name = strain
    coupled_tensor_increment_names = gb_relax
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_max_its = 5
  dt = 20
  num_steps = 5
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/flux_limited_TVD_pflow/jacobian_04.i

# Checking the Jacobian of Flux-Limited TVD Advection, 1 phase, 1 component, unsaturated, using flux_limiter_type != none
# This is quite a heavy test, but we need a fairly big mesh to check the flux-limiting+TVD is happening correctly
#
# Here we use snes_check_jacobian instead of snes_type=test.  The former just checks the Jacobian for the
# random initial conditions, while the latter checks for u=1 and u=-1
#
# The Jacobian is correct for u=1 and u=-1, but the finite-difference scheme used by snes_type=test gives the
# wrong answer.
# For u=constant, the Kuzmin-Turek scheme adds as much antidiffusion as possible, resulting in a central-difference
# version of advection (flux_limiter = 1).  This is correct, and the Jacobian is calculated correctly.
# However, when computing the Jacobian using finite differences, u is increased or decreased at a node.
# This results in that node being at a maximum or minimum, which means no antidiffusion should be added
# (flux_limiter = 0).  This corresponds to a full-upwind scheme.  So the finite-difference computes the
# Jacobian in the full-upwind scenario, which is incorrect (the original residual = 0, after finite-differencing
# the residual comes from the full-upwind scenario).
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  xmin = 0
  xmax = 1
  ny = 4
  ymin = -1
  ymax = 2
  bias_y = 1.5
  nz = 4
  zmin = 1
  zmax = 2
  bias_z = 0.8
[]

[GlobalParams]
  gravity = '1 2 -0.5'
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
[]


[ICs]
  [./pp]
    variable = pp
    type = RandomIC
    min = -1
    max = 0
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = pp
    advective_flux_calculator = advective_flux_calculator
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.4
      viscosity = 1.1
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1
    m = 0.5
  [../]
  [./advective_flux_calculator]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturated
    flux_limiter_type = minmod
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    phase = 0
    n = 2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.21 0 0  0 1.5 0  0 0 0.8'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options = '-snes_check_jacobian'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Linear # this is to force convergence even though the nonlinear residual is high: we just care about the Jacobian in this test
  end_time = 1
  num_steps = 1
  dt = 1
[]

modules/porous_flow/test/tests/poroperm/except1.i

# Exception test: thermal=true but no thermal_expansion_coeff provided
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
  biot_coefficient = 0.7
[]

[Variables]
  [./porepressure]
    initial_condition = 2
  [../]
  [./temperature]
    initial_condition = 4
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[ICs]
  [./disp_x]
    type = FunctionIC
    function = '0.5 * x'
    variable = disp_x
  [../]
[]

[Kernels]
  [./dummy_p]
    type = TimeDerivative
    variable = porepressure
  [../]
  [./dummy_t]
    type = TimeDerivative
    variable = temperature
  [../]
  [./dummy_x]
    type = TimeDerivative
    variable = disp_x
  [../]
  [./dummy_y]
    type = TimeDerivative
    variable = disp_y
  [../]
  [./dummy_z]
    type = TimeDerivative
    variable = disp_z
  [../]
[]

[AuxVariables]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[Postprocessors]
  [./porosity]
    type = PointValue
    variable = porosity
    point = '0 0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure temperature'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./porosity]
    type = PorousFlowPorosity
    mechanical = true
    fluid = true
    thermal = true
    ensure_positive = false
    porosity_zero = 0.5
    solid_bulk = 0.3
    reference_porepressure = 3
    reference_temperature = 3.5
  [../]
[]

[Executioner]
  solve_type = Newton
  type = Transient
  num_steps = 1
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/drucker_prager/small_deform2_native.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1.5E-6*x+2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./mc]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    smoother = 4
    mc_interpolation_scheme = native
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_native
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/richards/test/tests/jacobian_2/jn17.i

# two phase
# water saturated

# gravity = true
# supg = true
# transient = true


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      block = 0
      function = init_p
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      block = 0
      function = init_p
    [../]
  [../]
[]

[Functions]
  [./init_p]
    type = ParsedFunction
    value = x+0.6*y+0.3*z
  [../]
[]

[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn17
  exodus = false
[]

test/tests/postprocessors/default_value/default_value.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = DefaultPostprocessorDiffusion
    variable = u
    #pps_name = invalid_postprocessor_name
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  dt = 0.1
  num_steps = 10
[]

[Outputs]
  exodus = true
[]

modules/level_set/test/tests/verification/1d_level_set_mms/level_set_mms.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 32
  nx = 64
  uniform_refine = 0
[]

[Variables]
  [./phi]
  [../]
[]

[AuxVariables]
  [./v_x]
    initial_condition = 1
  [../]
[../]

[ICs]
  [./phi_ic]
    function = phi_exact
    variable = phi
    type = FunctionIC
  [../]
[]

[Functions]
  [./phi_exact]
    type = ParsedFunction
    value = 'a*exp(1/(10*t))*sin(2*pi*x/b) + 1'
    vars = 'a b'
    vals = '1 8'
  [../]
  [./phi_mms]
    type = ParsedFunction
    value = '-a*exp(1/(10*t))*sin(2*pi*x/b)/(10*t^2) + 2*pi*a*exp(1/(10*t))*cos(2*pi*x/b)/b'
    vars = 'a b'
    vals = '1 8'
  [../]
[]

[Kernels]
  [./phi_advection]
    type = LevelSetAdvection
    variable = phi
    velocity_x = v_x
  [../]
  [./phi_time]
    type = TimeDerivative
    variable = phi
  [../]
  [./phi_forcing]
    type = BodyForce
    variable = phi
    function = phi_mms
  [../]
[]

[Postprocessors]
  [./error]
    type = ElementL2Error
    function = phi_exact
    variable = phi
  [../]
  [./h]
    type = AverageElementSize
  [../]
  [./point]
    type = PointValue
    point = '0.1 0 0'
    variable = phi
  [../]
[]

[Executioner]
  type = Transient
  start_time = 1
  dt = 0.01
  end_time = 1.25
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_sub_type'
  petsc_options_value = 'asm      ilu'
  scheme = bdf2
  nl_rel_tol = 1e-12
[]

[Outputs]
  interval = 10
  execute_on = 'timestep_end'
  csv = true
[]

modules/porous_flow/test/tests/energy_conservation/heat02.i

# checking that the heat-energy postprocessor correctly calculates the energy
# 1phase, constant porosity
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 3
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./temp]
  [../]
  [./pp]
  [../]
[]

[ICs]
  [./tinit]
    type = FunctionIC
    function = '100*x'
    variable = temp
  [../]
  [./pinit]
    type = FunctionIC
    function = 'x'
    variable = pp
  [../]
[]

[Kernels]
  [./dummyt]
    type = TimeDerivative
    variable = temp
  [../]
  [./dummyp]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      viscosity = 0.001
      thermal_expansion = 0
      cv = 1.3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 2.2
    density = 0.5
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Postprocessors]
  [./total_heat]
    type = PorousFlowHeatEnergy
    phase = 0
  [../]
  [./rock_heat]
    type = PorousFlowHeatEnergy
  [../]
  [./fluid_heat]
    type = PorousFlowHeatEnergy
    include_porous_skeleton = false
    phase = 0
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1 1 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = heat02
  csv = true
[]

modules/combined/test/tests/sliding_block/sliding/dirac/sm/frictional_04_penalty_sm.i

#  This is a benchmark test that checks Dirac based frictional
#  contact using the penalty method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  A friction coefficient of 0.4 is used.  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.05
  end_time = 10
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    friction_coefficient = 0.4
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/combined/test/tests/solid_mechanics/spherical_shell/sm/3D_test_sm.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces. Three versions of the test are
# provided, assuming 1D spherical geometry (1D-SPH), 2D axisymmetic geometry
# (2D-RZ), and 3D geometry (3D). The tests demonstrate that all three geometric
# approaches produce the same correct solution.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000, respectively. The resulting compressive tangential
# stress is largest at the inner wall and, from the above equation, has a value
# of -271429.
#
# RESULTS are below. Since stresses are average element values, values for the
# edge element and one-element-in are used to extrapolate the stress to the
# inner surface. The vesrion of the tests that are checked use the coarsest meshes.
#
#  Mesh    Radial elem   S(edge elem)  S(one elem in)  S(extrap to surf)
# 1D-SPH       12          -264842      -254419        -270053
# 2D-RZ        12          -265007      -254668        -270177
#  3D          12 (4x4)    -258922      -251099        -262834
#  3D          12 (6x6)    -262194      -252969        -266807
#
# 1D-SPH       48          -269679      -266390        -271323
# 2D-RZ        48          -269723      -266470        -271350
#  3D          48          -268617      -265717        -270067
#
# 1D-SPH      100          -270580      -268932        -271404
# 2D-RZ       100          -270587      -268946        -271408
#
# The numerical solution converges to the analytical solution as the mesh is
# refined.

[GlobalParams]
  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  volumetric_locking_correction = false
[]

[Mesh]
  file = 3D_mesh.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
#    disp_r = disp_x
#    disp_z = disp_y
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
[]

[BCs]

# pin particle along symmetry planes
  [./no_disp_x]
    type = DirichletBC
    variable = disp_x
    boundary = xzero
    value = 0.0
  [../]

  [./no_disp_y]
    type = DirichletBC
    variable = disp_y
    boundary = yzero
    value = 0.0
  [../]

  [./no_disp_z]
    type = DirichletBC
    variable = disp_z
    boundary = zzero
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = outer
    component = 0
    factor = 200000
  [../]

 [./exterior_pressure_y]
    type = Pressure
    variable = disp_y
    boundary = outer
    component = 1
    factor = 200000
  [../]

[./exterior_pressure_z]
    type = Pressure
    variable = disp_z
    boundary = outer
    component = 2
    factor = 200000
  [../]

  [./interior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = inner
    component = 0
    factor = 100000
  [../]

  [./interior_pressure_y]
    type = Pressure
    variable = disp_y
    boundary = inner
    component = 1
    factor = 100000
  [../]

[./interior_pressure_z]
    type = Pressure
    variable = disp_z
    boundary = inner
    component = 2
    factor = 100000
  [../]
[]

[Materials]

 [./elastic]
    type = Elastic
    formulation = Nonlinear3D
    block = 1
#    disp_r = disp_x
#    disp_z = disp_y
    youngs_modulus = 1e10
    poissons_ratio = .345
    thermal_expansion = 0
  [../]
[]

[Debug]
    show_var_residual_norms = true
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

   start_time = 0.0
   end_time = 1
   num_steps = 1000

  dtmax = 5e6
  dtmin = 1
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    optimal_iterations = 6
    iteration_window = 0
    linear_iteration_ratio = 100
  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

#  [./Quadrature]
#    order = THIRD
#  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
[]

modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-fb-lm-nodal-disp.i

starting_point = 2e-1
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
  scaling = 1e0
[]

[Mesh]
  file = long-bottom-block-1elem-blocks.e
[]

[Problem]
  kernel_coverage_check = false
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
  [./normal_lm]
    block = 3
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = 10
    master = 20
    variable = normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = 'fb'
  [../]
  [./disp_x]
    type = NormalNodalMechanicalContact
    slave = 10
    master = 20
    variable = disp_x
    master_variable = disp_x
    lambda = normal_lm
    component = x
  [../]
  [./disp_y]
    type = NormalNodalMechanicalContact
    slave = 10
    master = 20
    variable = disp_y
    master_variable = disp_y
    lambda = normal_lm
    component = y
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  active = 'num_nl cumulative contact'
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '3'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/phase_field/test/tests/free_energy_material/IdealGasFreeEnergy.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  elem_type = QUAD4
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = x*0.4+0.001
    [../]
  [../]
  [./T]
    [./InitialCondition]
      type = FunctionIC
      function = y*1999+1
    [../]
  [../]
[]

[Materials]
  [./free_energy]
    type = IdealGasFreeEnergy
    f_name = Fgas
    m = 134 # Xenon
    omega = 41
    c = c
    T = T
    outputs = exodus
  [../]
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_1/cyl1_mu_0_2_pen.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl1_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = cyl1_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = cyl1_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

test/tests/multiapps/picard_catch_up_keep_solution/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = FunctionDirichletBC
    variable = v
    boundary = right
    function = 't + 1'
  [../]
[]

[Problem]
  type = FailingProblem
  fail_step = 2
[../]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/examples/flow_through_fractured_media/diffusion.i

[Mesh]
  file = diffusion_1.e # or diffusion_5.e or diffusion_fine.e
[]

[Variables]
  [./T]
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = 2
    variable = T
    value = 1
  [../]
[]

[Kernels]
  [./dot]
    type = TimeDerivative
    variable = T
  [../]
  [./fracture_diffusion]
    type = AnisotropicDiffusion
    block = 1
    tensor_coeff = '1 0 0  0 1 0  0 0 1'
    variable = T
  [../]
  [./matrix_diffusion]
    type = AnisotropicDiffusion
    block = '2 3'
    tensor_coeff = '0 0 0  0 0 0  0 0 0'
    variable = T
  [../]
[]

[Preconditioning]
  [./entire_jacobian]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 10
  end_time = 100
  nl_abs_tol = 1E-13
  nl_rel_tol = 1E-12
[]

[Outputs]
  print_linear_residuals = false
  exodus = true
[]

modules/richards/test/tests/jacobian_1/jn12.i

# unsaturated = true
# gravity = true
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGnone
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn12
  exodus = false
[]

modules/tensor_mechanics/test/tests/initial_stress/mc_tensile.i

# In this example, an initial stress is applied that
# is inadmissible, and the return-map algorithm must be
# used to return to the yield surface before any other
# computations can be carried out.
# In this case, the return-map algorithm must subdivide
# the initial stress, otherwise it does not converge.
# This test is testing that subdivision process.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = 'back'
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = 'back'
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = 'back'
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front'
    function = '2*t-1'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front'
    function = 't-1'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front'
    function = 't-1'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
    outputs = console
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E5
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4.0
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]

  [./str]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./pt]
    type = TensorMechanicsPlasticTensile
    tensile_strength = str
    yield_function_tolerance = 1E-3
    tensile_tip_smoother = 0.05
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '8E6 4E6 -18E6 4E6 -40E6 -2E6 -18E6 -2E6 -34E6'
    eigenstrain_name = ini_stress
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-9
    plastic_models = 'pt mc'
    deactivation_scheme = safe
    max_NR_iterations = 100
    min_stepsize = 0.1
  [../]
[]


[Executioner]
  end_time = 2
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = mc_tensile
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/transfers/multiapp_copy_transfer/aux_to_aux/from_sub.i

[Problem]
  solve = false
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[MultiApps/sub]
  type = TransientMultiApp
  input_files = sub.i
[]

[Transfers/from_sub]
  type = MultiAppCopyTransfer
  direction = from_multiapp
  multi_app = sub
  source_variable = aux
  variable = x
[]

[AuxVariables/x]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  execute_on = 'FINAL'
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/monte_carlo/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Postprocessors]
  [left_bc]
    type = NodalVariableValue
    nodeid = 0
    variable = u
  []
  [right_bc]
    type = NodalVariableValue
    nodeid = 10
    variable = u
  []
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update16.i

# MC update version, with only Compressive with compressive strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.
# Returns to the plane of compressive yield

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1 -0.1 -0.2  -0.1 -15 0.3  -0.2 0.3 0'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/multi/six_surface14.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
# SimpleTester3 with a = 0 and b = 1 and strength = 1.1
# SimpleTester4 with a = 1 and b = 0 and strength = 1.1
# SimpleTester5 with a = 1 and b = 1 and strength = 3.1
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 2.1E-6m in y direction and 3E-6 in z direction.
# trial stress_yy = 2.1 and stress_zz = 3.0
#
# This is similar to three_surface14.i, and a description is found there.
# The result should be stress_zz=1=stress_yy, with internal0=2
# and internal1=1.1

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2.1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '3.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f5]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int5]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./f3]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 3
    variable = f3
  [../]
  [./f4]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 4
    variable = f4
  [../]
  [./f5]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 5
    variable = f5
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
  [./int3]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 3
    variable = int3
  [../]
  [./int4]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 4
    variable = int4
  [../]
  [./int5]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 5
    variable = int5
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./f3]
    type = PointValue
    point = '0 0 0'
    variable = f3
  [../]
  [./f4]
    type = PointValue
    point = '0 0 0'
    variable = f4
  [../]
  [./f5]
    type = PointValue
    point = '0 0 0'
    variable = f5
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
  [./int3]
    type = PointValue
    point = '0 0 0'
    variable = int3
  [../]
  [./int4]
    type = PointValue
    point = '0 0 0'
    variable = int4
  [../]
  [./int5]
    type = PointValue
    point = '0 0 0'
    variable = int5
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple3]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple4]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple5]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2 simple3 simple4 simple5'
    max_NR_iterations = 4
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1'
    debug_jac_at_intnl = '1 1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = six_surface14
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/navier_stokes/test/tests/ins/RZ_cone/RZ_cone_high_reynolds.i

[GlobalParams]
  gravity = '0 0 0'
  laplace = true
  transient_term = false
  supg = true
  pspg = true
  family = LAGRANGE
  order = FIRST
[]

[Mesh]
  file = 'cone_linear_alltri.e'
[]

[Problem]
  coord_type = RZ
[]

[Preconditioning]
  [./SMP_PJFNK]
    type = SMP
    full = true
    solve_type = NEWTON
  [../]
[]

[Executioner]
  # type = Transient
  # dt = 0.005
  # dtmin = 0.005
  # num_steps = 5
  # l_max_its = 100

  # Block Jacobi works well for this problem, as does "-pc_type asm
  # -pc_asm_overlap 2", but an overlap of 1 does not work for some
  # reason?
  # petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_levels'
  # petsc_options_value = 'bjacobi  ilu          4'

  # Note: The Steady executioner can be used for this problem, if you
  # drop the INSMomentumTimeDerivative kernels and use the following
  # direct solver options.
  type = Steady
  petsc_options_iname = '-pc_type -pc_factor_shift_type'
  petsc_options_value = 'lu NONZERO'

  nl_rel_tol = 1e-12
  nl_max_its = 20
[]

[Outputs]
  csv = true
  console = true
  [./out]
    type = Exodus
  [../]
[]

[Variables]
  [./vel_x]
    # Velocity in radial (r) direction
  [../]
  [./vel_y]
    # Velocity in axial (z) direction
  [../]
  [./p]
    order = FIRST
  [../]
[]

[BCs]
  [./u_in]
    type = DirichletBC
    boundary = bottom
    variable = vel_x
    value = 0
  [../]
  [./v_in]
    type = FunctionDirichletBC
    boundary = bottom
    variable = vel_y
    function = 'inlet_func'
  [../]
  [./u_axis_and_walls]
    type = DirichletBC
    boundary = 'left right'
    variable = vel_x
    value = 0
  [../]
  [./v_no_slip]
    type = DirichletBC
    boundary = 'right'
    variable = vel_y
    value = 0
  [../]
[]


[Kernels]
  # [./x_momentum_time]
  #   type = INSMomentumTimeDerivative
  #   variable = vel_x
  # [../]
  # [./y_momentum_time]
  #   type = INSMomentumTimeDerivative
  #   variable = vel_y
  # [../]
  [./mass]
    type = INSMassRZ
    variable = p
    u = vel_x
    v = vel_y
    p = p
  [../]
  [./x_momentum_space]
    type = INSMomentumLaplaceFormRZ
    variable = vel_x
    u = vel_x
    v = vel_y
    p = p
    component = 0
  [../]
  [./y_momentum_space]
    type = INSMomentumLaplaceFormRZ
    variable = vel_y
    u = vel_x
    v = vel_y
    p = p
    component = 1
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 1
    prop_names = 'rho mu'
    prop_values = '1  1e-3'
  [../]
[]

[Functions]
  [./inlet_func]
    type = ParsedFunction
    value = '-4 * x^2 + 1'
  [../]
[]

[Postprocessors]
  [./flow_in]
    type = VolumetricFlowRate
    vel_x = vel_x
    vel_y = vel_y
    boundary = 'bottom'
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
  [./flow_out]
    type = VolumetricFlowRate
    vel_x = vel_x
    vel_y = vel_y
    boundary = 'top'
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
[]

modules/functional_expansion_tools/examples/2D_volumetric_Cartesian/main.i

# Basic example coupling a master and sub app in a 2D Cartesian volume.
#
# The master app provides field values to the sub app via Functional Expansions, which then performs
# its calculations. The sub app's solution field values are then transferred back to the master app
# and coupled into the solution of the master app solution.
#
# This example couples Functional Expansions via AuxVariable.
[Mesh]
  type = GeneratedMesh
  dim = 2

  xmin = 0.0
  xmax = 10.0
  nx = 15

  ymin = 1.0
  ymax = 11.0
  ny = 25
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = HeatConduction
    variable = m
  [../]
  [./time_diff_m]
    type = HeatConductionTimeDerivative
    variable = m
  [../]
  [./s_in] # Add in the contribution from the SubApp
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[Materials]
  [./Unobtanium]
    type = GenericConstantMaterial
    prop_names =  'thermal_conductivity specific_heat density'
    prop_values = '1.0                  1.0           1.0' # W/(cm K), J/(g K), g/cm^3
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'top bottom left right'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3   4'
    physical_bounds = '0.0  10.0    1.0 11.0'
    x = Legendre
    y = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

test/tests/postprocessors/random_pps/random_pps.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[Problem]
  solve = false
[]

[Postprocessors]
  [./random_pps]
    type = RandomPostprocessor
    seed = 1
    generator = 2
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/chemistry/except15.i

# Exception test
# Incorrect number of secondary densities
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = '1 1'
    stoichiometry = 2
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 1
    stoichiometry = 3
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    reactions = '2 3'
    specific_reactive_surface_area = 1.0
    kinetic_rate_constant = 1.0e-8
    activation_energy = 1.5e4
    molar_volume = 1
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/navier_stokes/test/tests/step/step.i

# Navier-Stokes (or Euler) flow of an ideal gas over a step.
#
# Note: this problem is not currently a regression test for the
# Navier-Stokes module since it is in some sense ill-posed.  As
# discussed in [0], the sharp corner of the step (both forward and
# backward-facing) introduces a singularity in the first derivative of
# the velocity and pressure fields, and therefore produces large
# numerical errors in the neighborhood of these points.  Physically,
# this numerical error can be interpreted as causing an artificial
# "boundary layer" to form just above the step, as well as a spurious
# production of entropy even though the flow remains subsonic.
# Nevertheless, the forward-facing step problem in particular remains
# a challenging and well-document test problem for flow solvers, and
# this input file is included to help facilitate its development and
# employment by users of the module.
#
# [0]: Woodward and Colella, "The numerical simulation of
# two-dimenstional fluid flow with strong shocks," Journal of
# Computational Physics 54(1), pp. 115-173, 1984

[Mesh]
  type = FileMesh
  file = step.e
  dim = 2
  # uniform_refine = 3
[]


[Modules]
  [./FluidProperties]
    [./ideal_gas]
      type = IdealGasFluidProperties
      gamma = 1.4
      R = 287
    [../]
  [../]

  [./NavierStokes]
    [./Variables]
      #         'rho rhou rhov   rhoE'
      scaling = '1.  1.    1.    9.869232667160121e-6'
      family = LAGRANGE
      order = FIRST
    [../]

    [./ICs]
      initial_pressure = 101325.
      initial_temperature = 300.
      initial_velocity = '173.594354746921 0 0' # Mach 0.5: = 0.5*sqrt(gamma*R*T)
      fluid_properties = ideal_gas
    [../]

    [./Kernels]
      fluid_properties = ideal_gas
    [../]

    [./BCs]
      [./inlet]
        type = NSWeakStagnationInletBC
        boundary = 'left'
        stagnation_pressure = 120192.995549849 # Pa, Mach=0.5 at 1 atm
        stagnation_temperature = 315 # K, Mach=0.5 at 1 atm
        sx = 1.
        sy = 0.
        fluid_properties = ideal_gas
      [../]

      [./solid_walls]
        type = NSNoPenetrationBC
        boundary = 'top bottom step_top step_left step_right'
        fluid_properties = ideal_gas
      [../]

      [./outlet]
        type = NSStaticPressureOutletBC
        boundary = 'right'
        specified_pressure = 101325 # Pa
        fluid_properties = ideal_gas
      [../]
    [../]
  [../]
[]



[Materials]
  [./fluid]
    type = Air
    block = 1
    rho = rho
    rhou = rhou
    rhov = rhov
    rhoE = rhoE
    vel_x = vel_x
    vel_y = vel_y
    temperature = temperature
    enthalpy = enthalpy
    # This value is not used in the Euler equations, but it *is* used
    # by the stabilization parameter computation, which it decreases
    # the amount of artificial viscosity added, so it's best to use a
    # realistic value.
    dynamic_viscosity = 0.0
    fluid_properties = ideal_gas
  [../]
[]



[Preconditioning]
  [./SMP_PJFNK]
    type = SMP
    full = true
    solve_type = 'PJFNK'
  [../]
[]



[Executioner]
  type = Transient
  dt = 5.e-5
  dtmin = 1.e-5
  start_time = 0.0
  num_steps = 10000
  nl_rel_tol = 1e-5
  nl_abs_tol = 1e-9
  # nl_abs_step_tol = 1e-15
  nl_max_its = 5
  l_tol = 1e-4 # Relative linear tolerance for each Krylov solve
  l_max_its = 100 # Number of linear iterations for each Krylov solve

  # Specify the order as FIRST, otherwise you will get warnings in DEBUG mode...
  [./Quadrature]
    type = TRAP
    order = FIRST
  [../]
[]



[Outputs]
  file_base = step_out
  interval = 1
  exodus = true
[]

modules/solid_mechanics/test/tests/domain_integral_thermal/j_integral_2d_ctefunc.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
[]

[Mesh]
  file = crack2d.e
  displacements = 'disp_x disp_y'
#  uniform_refine = 3
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*x/504)
  [../]
  [./cte_func]
    type = PiecewiseLinear
    x = '-10 -6 -2 0 2 6 10'
    y = '1.484e-5 1.489e-5 1.494e-5 1.496e-5 1.498e-5 1.502e-5 1.505e-5'

#     x = '-10 10'
#     y = '1.35e-5 1.35e-5'
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 400
    value = 0.0
  [../]

  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = 900
    value = 0.0
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
#    thermal_expansion = 1.35e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
    temp = temp
    stress_free_temperature = 0.0
    thermal_expansion_function = cte_func

  [../]
[]


[Executioner]

  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 40

   nl_rel_step_tol= 1e-10
   nl_rel_tol = 1e-10


   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  csv = true
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

modules/xfem/test/tests/pressure_bc/inclined_edge_2d_pressure.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = False
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 9
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.0 0.33 0.5 0.67'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    generate_output = 'stress_xx stress_yy'
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1.0 2.0'
    y = '0 500 1000'
  [../]
[]

[BCs]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    variable = disp_x
    value = 0.0
  [../]
[]

[DiracKernels]
  [./pressure_x]
    type = XFEMPressure
    variable = disp_x
    component = 0
    function = pressure
  [../]

  [./pressure_y]
    type = XFEMPressure
    variable = disp_y
    component = 1
    function = pressure
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1
  end_time = 2
[]

[Outputs]
  file_base = inclined_edge_2d_pressure_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/tensor_mechanics/test/tests/crystal_plasticity/orthotropic_rotation_Cijkl.i

# This test is designed to test the correct application of the Euler angle
# rotations to the elasticity tensor. The test uses values for the nine C_ijkl
# entries that correspond to the engineering notation placement:
#  e.g. C11 = 11e3, c12 = 12e3, c13 = 13e3, c22 = 22e3 ..... c66 = 66e3
#
# A rotation of (0, 90, 0) is applied to the 1x1x1 cube, such that the values of
# c12 and c13 switch, c22 and c33 switch, and c55 and c66 switch. Postprocessors
# are used to verify this switch (made simple with the value convention above)
# and to verify that the unrotated components along the x-axis remain constant.

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./lage_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./lage_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pk2_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./lage_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c12]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c13]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c23]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c33]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c44]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c55]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c66]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
  [../]
[]

[AuxKernels]
  [./lage_xx]
    type = RankTwoAux
    rank_two_tensor = lage
    variable = lage_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./lage_yy]
    type = RankTwoAux
    rank_two_tensor = lage
    variable = lage_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./pk2_yy]
    type = RankTwoAux
    variable = pk2_yy
    rank_two_tensor = pk2
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./lage_zz]
    type = RankTwoAux
    rank_two_tensor = lage
    variable = lage_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./fp_yy]
    type = RankTwoAux
    variable = fp_yy
    rank_two_tensor = fp
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./c11]
    type = RankFourAux
    variable = c11
    rank_four_tensor = elasticity_tensor
    index_i = 0
    index_j = 0
    index_k = 0
    index_l = 0
    execute_on = timestep_end
  [../]
  [./c12]
    type = RankFourAux
    variable = c12
    rank_four_tensor = elasticity_tensor
    index_i = 0
    index_j = 0
    index_k = 1
    index_l = 1
    execute_on = timestep_end
  [../]
  [./c13]
    type = RankFourAux
    variable = c13
    rank_four_tensor = elasticity_tensor
    index_i = 0
    index_j = 0
    index_k = 2
    index_l = 2
    execute_on = timestep_end
  [../]
  [./c22]
    type = RankFourAux
    variable = c22
    rank_four_tensor = elasticity_tensor
    index_i = 1
    index_j = 1
    index_k = 1
    index_l = 1
    execute_on = timestep_end
  [../]
  [./c23]
    type = RankFourAux
    variable = c23
    rank_four_tensor = elasticity_tensor
    index_i = 1
    index_j = 1
    index_k = 2
    index_l = 2
    execute_on = timestep_end
  [../]
  [./c33]
    type = RankFourAux
    variable = c33
    rank_four_tensor = elasticity_tensor
    index_i = 2
    index_j = 2
    index_k = 2
    index_l = 2
    execute_on = timestep_end
  [../]
  [./c44]
    type = RankFourAux
    variable = c44
    rank_four_tensor = elasticity_tensor
    index_i = 1
    index_j = 2
    index_k = 1
    index_l = 2
    execute_on = timestep_end
  [../]
  [./c55]
    type = RankFourAux
    variable = c55
    rank_four_tensor = elasticity_tensor
    index_i = 2
    index_j = 0
    index_k = 2
    index_l = 0
    execute_on = timestep_end
  [../]
  [./c66]
    type = RankFourAux
    variable = c66
    rank_four_tensor = elasticity_tensor
    index_i = 0
    index_j = 1
    index_k = 0
    index_l = 1
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCrystalPlasticity
    block = 0
    gtol = 1e-2
    slip_sys_file_name = input_slip_sys.txt
    nss = 12
    num_slip_sys_flowrate_props = 2 #Number of properties in a slip system
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    hprops = '1.0 541.5 60.8 109.8 2.5'
    gprops = '1 4 60.8e3 5 8 60.8e3 9 12 60.8e3'
    tan_mod_type = exact
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    C_ijkl = '11e3 12e3 13e3 22e3 23e3 33e3 44e3 55e3 66e3'
    fill_method = symmetric9
    euler_angle_1 = 0.0
    euler_angle_2 = 90.0
    euler_angle_3 = 0.0
  [../]
[]

[Postprocessors]
  [./lage_xx]
    type = ElementAverageValue
    variable = lage_xx
  [../]
  [./pk2_yy]
    type = ElementAverageValue
    variable = pk2_yy
  [../]
  [./lage_yy]
    type = ElementAverageValue
    variable = lage_yy
  [../]
  [./lage_zz]
    type = ElementAverageValue
    variable = lage_zz
  [../]
  [./fp_yy]
    type = ElementAverageValue
    variable = fp_yy
  [../]
  [./c11]
    type = ElementAverageValue
    variable = c11
  [../]
  [./c12]
    type = ElementAverageValue
    variable = c12
  [../]
  [./c13]
    type = ElementAverageValue
    variable = c13
  [../]
  [./c22]
    type = ElementAverageValue
    variable = c22
  [../]
  [./c23]
    type = ElementAverageValue
    variable = c23
  [../]
  [./c33]
    type = ElementAverageValue
    variable = c33
  [../]
  [./c44]
    type = ElementAverageValue
    variable = c44
  [../]
  [./c55]
    type = ElementAverageValue
    variable = c55
  [../]
  [./c66]
    type = ElementAverageValue
    variable = c66
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  l_tol = 1e-3
  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      1              lu            gmres     200'
  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-10

  dtmax = 0.1
  dtmin = 1.0e-3
  dt = 0.05
  end_time = 0.5
[]

[Outputs]
  exodus = false
  csv = true
[]

modules/tensor_mechanics/test/tests/beam/static/euler_pipe_axial_disp.i

# Test for small strain Euler beam axial loading in x direction.

# Modeling a pipe with an OD of 10 inches and ID of 8 inches
# The length of the pipe is 5 feet (60 inches) and E = 30e6
# G = 11.54e6 with nu = 0.3
# The applied axial load is 50000 lb which results in a
# displacement of 3.537e-3 inches at the end

# delta = PL/AE = 50000 * 60 / pi (5^2 - 4^2) * 30e6 = 3.537e-3

# In this analysis the displacement is used as a BC

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 60.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
  [./appl_disp_x2]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 3.537e-3
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 30e6
    poissons_ratio = 0.3
    shear_coefficient = 1.0
    block = 0
    outputs = exodus
    output_properties = 'material_stiffness material_flexure'
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 28.274
    Ay = 0.0
    Az = 0.0
    Iy = 1.0
    Iz = 1.0
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
    outputs = exodus
    output_properties = 'forces moments'
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '60.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '60.0 0.0 0.0'
    variable = disp_y
  [../]
  [./forces_x]
    type = PointValue
    point = '60.0 0.0 0.0'
    variable = forces_x
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/fflux11.i

# 1phase, 3components, constant viscosity, constant insitu permeability
# density with constant bulk, VG relative perm with a cubic, nonzero gravity, unsaturated with VG
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
  [./massfrac1]
  [../]
[]

[ICs]
  [./pp]
    type = RandomIC
    variable = pp
    min = -1.0
    max = 0.0
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 0.3
  [../]
  [./massfrac1]
    type = RandomIC
    variable = massfrac1
    min = 0
    max = 0.4
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
    gravity = '-1 -0.1 0'
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = massfrac0
    gravity = '-1 -0.1 0'
  [../]
  [./flux2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 2
    variable = massfrac1
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0 massfrac1'
    number_fluid_phases = 1
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.6
    alpha = 1 # small so that most effective saturations are close to 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0 massfrac1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityVG
    m = 0.6
    seff_turnover = 0.8
    phase = 0
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/combined/test/tests/ad_cavity_pressure/negative_volume.i

#
# Cavity Pressure Test
#
# This test is designed to compute a negative number of moles
# to trigger an error check in the CavityPressureUserObject.
# The negative number of moles is achieved by supplying an
# open volume to the InternalVolume postprocessor, which
# calculates a negative volume.

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 2
[]

[Functions]
  [./temperature]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 2'
    scale_factor = 100
  [../]
[]

[Variables]
  [./temperature]
    initial_condition = 100
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    strain = FINITE
    add_variables = true
    use_automatic_differentiation = true
  [../]
[]

[Kernels]
  [./heat]
    type = Diffusion
    variable = temperature
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./no_x]
    type = ADDirichletBC
    variable = disp_r
    boundary = left
    value = 0.0
  [../]
  [./no_y]
    type = ADDirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]
  [./temperatureInterior]
    type = ADFunctionDirichletBC
    boundary = 2
    function = temperature
    variable = temperature
  [../]
  [./CavityPressure]
    [./pressure]
      boundary = 'top bottom right'
      initial_pressure = 10e5
      R = 8.3143
      output_initial_moles = initial_moles
      temperature = aveTempInterior
      volume = internalVolume
      startup_time = 0.5
      output = ppress
      use_automatic_differentiation = true
    [../]
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress1]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  nl_abs_tol = 1e-10
  l_max_its = 20
  dt = 0.5
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 'top bottom right'
    execute_on = 'initial linear'
  [../]
  [./aveTempInterior]
    type = AxisymmetricCenterlineAverageValue
    boundary = left
    variable = temperature
    execute_on = 'initial linear'
  [../]
[]

[Outputs]
  exodus = false
[]

tutorials/darcy_thermo_mech/step05_heat_conduction/problems/step5b_transient.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 10
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
[]

[Variables]
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[Kernels]
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
[]

[BCs]
  [inlet_temperature]
    type = DirichletBC
    variable = temperature
    boundary = left
    value = 350 # (K)
  []
  [outlet_temperature]
    type = DirichletBC
    variable = temperature
    boundary = right
    value = 300 # (K)
  []
[]

[Materials]
  [steel]
    type = GenericConstantMaterial
    prop_names = 'thermal_conductivity specific_heat density'
    prop_values = '18 0.466 8000' # W/m*K, J/kg-K, kg/m^3 @ 296K
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  num_steps = 10
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_simple_linear/linear-ad-reverse-dependency.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./stress_x]
    type = ADStressDivergenceTensors
    component = 0
    variable = disp_x
  [../]
  [./stress_y]
    type = ADStressDivergenceTensors
    component = 1
    variable = disp_y
  [../]
  [./stress_z]
    type = ADStressDivergenceTensors
    component = 2
    variable = disp_z
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
[]

[Materials]
  [./stress]
    type = ADComputeLinearElasticStress
  [../]
  [./strain]
    type = ADComputeSmallStrain
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
  file_base = "linear-out"
[]

modules/porous_flow/examples/restart/gravityeq.i

# Initial run to establish gravity equilibrium. As only brine is present (no gas),
# we can use the single phase equation of state and kernels, reducing the computational
# cost. An estimate of the hydrostatic pressure gradient is used as the initial condition
# using an approximate brine density of 1060 kg/m^3.
# The end time is set to a large value (~100 years) to allow the pressure to reach
# equilibrium. Steady state detection is used to halt the run when a steady state is reached.

[Mesh]
  type = GeneratedMesh
  dim = 2
  ny = 10
  nx = 10
  ymax = 100
  xmax = 5000
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 -9.81 0'
  temperature_unit = Celsius
[]

[Variables]
  [./porepressure]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    function = ppic
    variable = porepressure
  [../]
[]

[Functions]
  [./ppic]
    type = ParsedFunction
    value = '10e6 + 1060*9.81*(100-y)'
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = porepressure
    value = 10e6
    boundary = top
  [../]
[]

[AuxVariables]
  [./temperature]
    initial_condition = 50
  [../]
  [./xnacl]
    initial_condition = 0.1
  [../]
  [./brine_density]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = porepressure
  [../]
  [./flux0]
    type = PorousFlowFullySaturatedDarcyFlow
    variable = porepressure
  [../]
[]

[AuxKernels]
  [./brine_density]
    type = PorousFlowPropertyAux
    property = density
    variable = brine_density
    execute_on = 'initial timestep_end'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = porepressure
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./brine]
      type = BrineFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./ps]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./brine]
    type = PorousFlowBrine
    compute_enthalpy = false
    compute_internal_energy = false
    xnacl = xnacl
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-13 0 0 0 1e-13 0  0 0 1e-13'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 3e9
  nl_abs_tol = 1e-12
  nl_rel_tol = 1e-06
  steady_state_detection = true
  steady_state_tolerance = 1e-12
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1e1
  [../]
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  perf_graph = true
[]

test/tests/misc/check_error/time_integrator_error.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  # Don't allow multiple TimeIntegrators
  scheme = 'implicit-euler'
  [./TimeIntegrator]
    type = 'ImplicitEuler'
  [../]

  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/phase_field_fracture/crack2d_iso_wo_time.i

#This input does not add time derivative kernel for phase field equation
[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 20
    ny = 10
    ymax = 0.5
  []
  [./noncrack]
    type = BoundingBoxNodeSetGenerator
    new_boundary = noncrack
    bottom_left = '0.5 0 0'
    top_right = '1 0 0'
    input = gen
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./mech]
        add_variables = true
        strain = SMALL
        additional_generate_output = 'stress_yy'
        save_in = 'resid_x resid_y'
      [../]
    [../]
  [../]
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./resid_x]
  [../]
  [./resid_y]
  [../]
[]

[Kernels]
  [./solid_x]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_x
    component = 0
    c = c
  [../]
  [./solid_y]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_y
    component = 1
    c = c
  [../]
  [./ACBulk]
    type = AllenCahn
    variable = c
    f_name = F
  [../]

  [./ACInterface]
    type = ACInterface
    variable = c
    kappa_name = kappa_op
  [../]
[]

[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 't'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = noncrack
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value = 0
  [../]
[]

[Materials]
  [./pfbulkmat]
    type = GenericConstantMaterial
    prop_names = 'gc_prop l visco'
    prop_values = '1e-3 0.04 1e-4'
  [../]
  [./define_mobility]
    type = ParsedMaterial
    material_property_names = 'gc_prop visco'
    f_name = L
    function = '1.0/(gc_prop * visco)'
  [../]
  [./define_kappa]
    type = ParsedMaterial
    material_property_names = 'gc_prop l'
    f_name = kappa_op
    function = 'gc_prop * l'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
  [../]
  [./elastic]
    type = ComputeLinearElasticPFFractureStress
    c = c
    E_name = 'elastic_energy'
    D_name = 'degradation'
    F_name = 'local_fracture_energy'
    decomposition_type = strain_spectral
  [../]
  [./degradation]
    type = DerivativeParsedMaterial
    f_name = degradation
    args = 'c'
    function = '(1.0-c)^2*(1.0 - eta) + eta'
    constant_names       = 'eta'
    constant_expressions = '0.0'
    derivative_order = 2
  [../]
  [./local_fracture_energy]
    type = DerivativeParsedMaterial
    f_name = local_fracture_energy
    args = 'c'
    material_property_names = 'gc_prop l'
    function = 'c^2 * gc_prop / 2 / l'
    derivative_order = 2
  [../]
  [./fracture_driving_energy]
    type = DerivativeSumMaterial
    args = c
    sum_materials = 'elastic_energy local_fracture_energy'
    derivative_order = 2
    f_name = F
  [../]
[]

[Postprocessors]
  [./resid_x]
    type = NodalSum
    variable = resid_x
    boundary = 2
  [../]
  [./resid_y]
    type = NodalSum
    variable = resid_y
    boundary = 2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_rel_tol = 1e-8
  l_max_its = 10
  nl_max_its = 10

  dt = 1e-4
  dtmin = 1e-4
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/checkpoint/checkpoint_block.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 11
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  [./out]
    type = Checkpoint
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_1/brick1_mu_0_2_pen.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick1_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
  [./tang_force_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_x
  [../]
  [./disp_x13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_y
  [../]
  [./disp_y13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  file_base = brick1_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = brick1_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x5 disp_x8 disp_x13 disp_x16 disp_y5 disp_y8 disp_y13 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/porous_flow/test/tests/radioactive_decay/radioactive_decay01.i

# checking radioactive decay
# 1phase, 1component, constant porosity
#
# Note that we don't get mass = mass0 * exp(-Lambda * t)
# because of the time discretisation.  We are solving
# the equation
# (mass - mass0)/dt = -Lambda * mass
# which has the solution
# mass = mass0/(1 + Lambda * dt)
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 3
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pinit]
    type = FunctionIC
    function = 10
    variable = pp
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./decay]
    type = PorousFlowMassRadioactiveDecay
    fluid_component = 0
    variable = pp
    decay_rate = 2.0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Postprocessors]
  [./total_mass]
    type = PorousFlowFluidMass
    execute_on = 'timestep_end'
  [../]
  [./total_mass0]
    type = PorousFlowFluidMass
    execute_on = 'timestep_begin'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_0
  [../]
[]

[Functions]
  [./should_be_0]
    type = ParsedFunction
    vars = 'm0 m rate dt'
    vals = 'total_mass0 total_mass 2.0 1'
    value = 'm-m0/(1.0+rate*dt)'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = radioactive_decay01
  csv = true
[]

modules/combined/test/tests/internal_volume/rz_sm.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a space considering
#   an embedded volume inside.
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total volume
#   is 7.
#

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = meshes/rz.e
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e4
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2'
    value = 0.0
  [../]

  [./Pressure]
    [./fred]
      boundary = 3
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
    [../]
  [../]
[]

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    block = 2

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 2
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/combined/test/tests/contact_verification/hertz_cyl/half_symm_q8/hertz_cyl_half_1deg_template3.i

[GlobalParams]
  order = SECOND
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = hertz_cyl_half_1deg.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./disp_ramp_vert]
    type = PiecewiseLinear
    x = '0. 1. 11.'
    y = '0. -0.0020 -0.0020'
  [../]
  [./disp_ramp_horz]
    type = PiecewiseLinear
    x = '0. 1. 11.'
    y = '0. 0.0 0.0014'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./disp_x639]
    type = NodalVariableValue
    nodeid = 638
    variable = disp_x
  [../]
  [./disp_y639]
    type = NodalVariableValue
    nodeid = 638
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2'
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]
  [./top_y_disp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = disp_ramp_vert
  [../]
  [./top_x_disp]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = disp_ramp_horz
  [../]
[]

[Materials]
  [./stuff1_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e10
    poissons_ratio = 0.0
  [../]
  [./stuff1_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./stuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./stuff2_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff2_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./stuff2_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
  [./stuff3_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '3'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff3_strain]
    type = ComputeFiniteStrain
    block = '3'
  [../]
  [./stuff3_stress]
    type = ComputeFiniteStrainElasticStress
    block = '3'
  [../]
  [./stuff4_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '4'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff4_strain]
    type = ComputeFiniteStrain
    block = '4'
  [../]
  [./stuff4_stress]
    type = ComputeFiniteStrainElasticStress
    block = '4'
  [../]
  [./stuff5_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '5'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff5_strain]
    type = ComputeFiniteStrain
    block = '5'
  [../]
  [./stuff5_stress]
    type = ComputeFiniteStrainElasticStress
    block = '5'
  [../]
  [./stuff6_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '6'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff6_strain]
    type = ComputeFiniteStrain
    block = '6'
  [../]
  [./stuff6_stress]
    type = ComputeFiniteStrainElasticStress
    block = '6'
  [../]
  [./stuff7_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '7'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff7_strain]
    type = ComputeFiniteStrain
    block = '7'
  [../]
  [./stuff7_stress]
    type = ComputeFiniteStrainElasticStress
    block = '7'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 200

  start_time = 0.0
  end_time = 2.0
  l_tol = 5e-4
  dt = 0.1
  dtmin = 0.1
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '3 4'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '3 4'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'x_disp y_disp cont_press'
    start_time = 0.9
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./chkfile2]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x639 disp_y639 top_react_x top_react_y'
    start_time = 0.9
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./interface]
    master = 2
    slave = 3
    model = coulomb
    friction_coefficient = 0.0
    system = constraint
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    master = '2'
    slave = '3'
  [../]
[]

modules/richards/test/tests/buckley_leverett/bl20_lumped.i

# two-phase version
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 30
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '0.1 0.5 0.5 1 2  4'
    x = '0   0.1 1   5 40 42'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E6
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./w_aux_seff]
  [../]
[]



[Kernels]
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[AuxKernels]
  [./w_aux_seff_auxk]
    type = RichardsSeffAux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
    variable = w_aux_seff
  [../]
[]


[ICs]
  [./water_ic]
    type = FunctionIC
    variable = pwater
    function = initial_water
  [../]
  [./gas_ic]
    type = FunctionIC
    variable = pgas
    function = initial_gas
  [../]
[]

[BCs]
  [./left_w]
    type = DirichletBC
    variable = pwater
    boundary = left
    value = 1E6
  [../]
  [./left_g]
    type = DirichletBC
    variable = pgas
    boundary = left
    value = 1000
  [../]
  [./right_w]
    type = DirichletBC
    variable = pwater
    boundary = right
    value = -300000
  [../]
  [./right_g]
    type = DirichletBC
    variable = pgas
    boundary = right
    value = 0
  [../]
[]


[Functions]
  [./initial_water]
    type = ParsedFunction
    value = 1000000*(1-min(x/5,1))-if(x<5,0,300000)
  [../]
  [./initial_gas]
    type = ParsedFunction
    value = 1000
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    viscosity = '1E-3 1E-6'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'standard'

  [./bounded]
  # must use --use-petsc-dm command line argument
    type = SMP
    full = true
    petsc_options_iname = '-snes_type   -pc_factor_shift_type'
    petsc_options_value = 'vinewtonssls nonzero'
  [../]

  [./standard]
    type = SMP
    full = true
    petsc_options_iname = '-pc_factor_shift_type'
    petsc_options_value = 'nonzero'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 50

  nl_rel_tol = 1.e-9
  nl_max_its = 10

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = bl20_lumped
  execute_on = 'initial timestep_end final'
  interval = 100000
  exodus = true
  hide = pgas
  [./console_out]
    type = Console
    interval = 1
  [../]
[]

modules/richards/test/tests/gravity_head_2/gh_fu_18.i

# with immobile saturation - this illustrates a perfect case of fullyupwind working very well
# unsaturated = true
# gravity = true
# full upwinding = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 0.5E1 0.5E2 0.4E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.4
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.3
    n = 2
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = gh_fu_18
  execute_on = 'timestep_end final'
  interval = 100000
  exodus = true
[]

modules/porous_flow/test/tests/chemistry/except10.i

# Exception test.
# Incorrect number of activation energies

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    reactions = '1 1'
    specific_reactive_surface_area = 1.0
    kinetic_rate_constant = 1.0e-8
    activation_energy = '1.5e4 1'
    molar_volume = 1
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test3.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
    xmin = 0
    xmax = 4
    ymin = 0
    ymax = 4
  []

  [./SubdomainBoundingBox]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    bottom_left = '1 1 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeletionGenerator
    block_id = 1
    input = SubdomainBoundingBox
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/auxkernels/nodal_aux_var/nodal_aux_init_test.i

#
# Testing nodal aux variables that are computed only at the end of the time step
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 3
  ny = 3
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 5
  [../]
[]

[AuxVariables]
  active = 'aux1 aux2'

  [./aux1]
    order = FIRST
    family = LAGRANGE
    initial_condition = 2
  [../]

  [./aux2]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'ie diff force'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  #Coupling of nonlinear to Aux
  [./force]
    type = CoupledForce
    variable = u
    v = aux2
  [../]
[]

[AuxKernels]
  active = 'constant field'

  #Simple Aux Kernel
  [./constant]
    variable = aux1
    type = ConstantAux
    value = 1
    execute_on = nonlinear
  [../]

  #AuxKernel that is setup only before the simulation starts
  [./field]
    variable = aux2
    type = CoupledAux
    value = 2
    coupled = u
    execute_on = initial
  [../]
[]

[BCs]
  active = 'left right'

  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  start_time = 0
  dt = 0.1
  num_steps = 2


  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
  file_base = out_init
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test2.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 4
    ny = 4
    nz = 1
    xmin = 0
    xmax = 4
    ymin = 0
    ymax = 4
    zmin = 0
    zmax = 1
  []

  [./SubdomainBoundingBox]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeletionGenerator
    input = SubdomainBoundingBox
    block_id = 1
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/moment_fitting/sm/solid_mechanics_moment_fitting.i

# Test for a mechanics problem which uses four points moment_fitting approach.
# See this paper (https://doi.org/10.1007/s00466-018-1544-2) for more details about moment_fitting approach.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = moment_fitting
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
[]

[UserObjects]
  [./line_seg_cut_uo0]
    type = LineSegmentCutUserObject
    cut_data = '0.0000e+00   6.3330e-01   3.9000e-01   6.3330e-01'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./line_seg_cut_uo1]
    type = LineSegmentCutUserObject
    cut_data = '3.9000e-01   6.3330e-01   6.8000e-01   6.3330e-01'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./right_trac_x]
    type = ParsedFunction
    value = '-(t*M*y)/I'
    vars = 'M E I'
    vals = '2e4 1e6 0.666666667'
  [../]
  [./bottom_disp_y]
    type = ParsedFunction
    value = '((t*M)/(2*E*I))*(1-nu*nu)*(x*x-0.25*l*l)'
    vars = 'M E I l nu'
    vals = '2e4 1e6 0.666666667 2.0 0.3'
  [../]
  [./soln_x]
    type = ParsedFunction
    value = '-(M/(E*I))*(1-nu*nu)*x*y'
    vars = 'M E I nu'
    vals = '2e4 1e6 0.666666667 0.3'
  [../]
  [./soln_y]
    type = ParsedFunction
    value = '(M/(2*E*I))*(1-nu*nu)*(x*x-0.25*l*l+(nu/(1-nu))*y*y)'
    vars = 'M E I l nu'
    vals = '2e4 1e6 0.666666667 2.0 0.3'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionNeumannBC
    boundary = 1
    variable = disp_x
    function = right_trac_x
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    boundary = 0
    variable = disp_y
    function = bottom_disp_y
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

#  [./Quadrature]
#    order = FOURTH
#    type = MONOMIAL
#  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 0.5
  end_time = 1.0
  num_steps = 5000
[]

[Postprocessors]
  [./numel]
    type = NumElems
    execute_on = timestep_end
  [../]
  [./integral]
    type = ElementVectorL2Error
    var_x = disp_x
    var_y = disp_y
    function_x = soln_x
    function_y = soln_y
    execute_on = timestep_end
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest9.i

# 2D, removal of a block which should also completely remove a sideset
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  xmin = 0
  xmax = 4
  ymin = 0
  ymax = 4
[]

[MeshModifiers]
  [./SubdomainBoundingBox1]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '3 4 1'
  [../]
  [./ed0]
    type = BlockDeleter
    block_id = 1
    depends_on = 'SubdomainBoundingBox1'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/jacobian_1/jn_fu_30.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true
# wellbore = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = jn30.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = 1E12
    fully_upwind = true
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn_fu_30
  exodus = false
[]

modules/combined/test/tests/thermal_strain/thermal_strain.i

# Patch Test

# This test is designed to compute displacements from a thermal strain.

# The cube is displaced by 1e-6 units in x, 2e-6 in y, and 3e-6 in z.
#  The faces are sheared as well (1e-6, 2e-6, and 3e-6 for xy, yz, and
#  zx).  This gives a uniform strain/stress state for all six unique
#  tensor components.

# The temperature moves 100 degrees, and the coefficient of thermal
#  expansion is 1e-6.  Therefore, the strain (and the displacement
#  since this is a unit cube) is 1e-4.
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = thermal_strain_test.e
[]

[Functions]
  [./tempFunc]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '117.56 217.56'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules/TensorMechanics/Master]
  use_displaced_mesh = true
  add_variables = true
  strain = SMALL
  incremental = true
  generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'

  [./block1]
    eigenstrain_names = eigenstrain1
    block = 1
  [../]
  [./block2]
    eigenstrain_names = eigenstrain2
    block = 2
  [../]
  [./block3]
    eigenstrain_names = eigenstrain3
    block = 3
  [../]
  [./block4]
    eigenstrain_names = eigenstrain4
    block = 4
  [../]
  [./block5]
    eigenstrain_names = eigenstrain5
    block = 5
  [../]
  [./block6]
    eigenstrain_names = eigenstrain6
    block = 6
  [../]
  [./block7]
    eigenstrain_names = eigenstrain7
    block = 7
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 10
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 9
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 14
    value = 0
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = '10 12'
    function = tempFunc
  [../]
[]

[Materials]
  [./elasticity_tensor1]
    type = ComputeIsotropicElasticityTensor
    block = 1
    bulk_modulus = 0.333333333333e6
    poissons_ratio = 0.0
  [../]
  [./thermal_strain1]
    type = ComputeThermalExpansionEigenstrain
    block = 1
    temperature = temp
    stress_free_temperature = 117.56
    thermal_expansion_coeff = 1e-6
    eigenstrain_name = eigenstrain1
  [../]
  [./stress1]
    type = ComputeStrainIncrementBasedStress
    block = 1
  [../]

  [./elasticity_tensor2]
    type = ComputeIsotropicElasticityTensor
    block = 2
    bulk_modulus = 0.333333333333e6
    lambda = 0.0
  [../]
  [./thermal_strain2]
    type = ComputeThermalExpansionEigenstrain
    block = 2
    temperature = temp
    stress_free_temperature = 117.56
    thermal_expansion_coeff = 1e-6
    eigenstrain_name = eigenstrain2
  [../]
  [./stress2]
    type = ComputeStrainIncrementBasedStress
    block = 2
  [../]

  [./elasticity_tensor3]
    type = ComputeIsotropicElasticityTensor
    block = 3
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
  [./thermal_strain3]
    type = ComputeThermalExpansionEigenstrain
    block = 3
    temperature = temp
    stress_free_temperature = 117.56
    thermal_expansion_coeff = 1e-6
    eigenstrain_name = eigenstrain3
  [../]
  [./stress3]
    type = ComputeStrainIncrementBasedStress
    block = 3
  [../]

  [./elasticity_tensor4]
    type = ComputeIsotropicElasticityTensor
    block = 4
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
  [./thermal_strain4]
    type = ComputeThermalExpansionEigenstrain
    block = 4
    temperature = temp
    stress_free_temperature = 117.56
    thermal_expansion_coeff = 1e-6
    eigenstrain_name = eigenstrain4
  [../]
  [./stress4]
    type = ComputeStrainIncrementBasedStress
    block = 4
  [../]

  [./elasticity_tensor5]
    type = ComputeIsotropicElasticityTensor
    block = 5
    youngs_modulus = 1e6
    lambda = 0.0
  [../]
  [./thermal_strain5]
    type = ComputeThermalExpansionEigenstrain
    block = 5
    temperature = temp
    stress_free_temperature = 117.56
    thermal_expansion_coeff = 1e-6
    eigenstrain_name = eigenstrain5
  [../]
  [./stress5]
    type = ComputeStrainIncrementBasedStress
    block = 5
  [../]

  [./elasticity_tensor6]
    type = ComputeIsotropicElasticityTensor
    block = 6
    youngs_modulus = 1e6
    shear_modulus = 5e5
  [../]
  [./thermal_strain6]
    type = ComputeThermalExpansionEigenstrain
    block = 6
    temperature = temp
    stress_free_temperature = 117.56
    thermal_expansion_coeff = 1e-6
    eigenstrain_name = eigenstrain6
  [../]
  [./stress6]
    type = ComputeStrainIncrementBasedStress
    block = 6
  [../]

  [./elasticity_tensor7]
    type = ComputeIsotropicElasticityTensor
    block = 7
    shear_modulus = 5e5
    poissons_ratio = 0.0
  [../]
  [./thermal_strain7]
    type = ComputeThermalExpansionEigenstrain
    block = 7
    temperature = temp
    stress_free_temperature = 117.56
    thermal_expansion_coeff = 1e-6
    eigenstrain_name = eigenstrain7
  [../]
  [./stress7]
    type = ComputeStrainIncrementBasedStress
    block = 7
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = '1 2 3 4 5 6 7'
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    block = '1 2 3 4 5 6 7'
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 0.5
  num_steps = 2
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/functional_expansion_tools/examples/3D_volumetric_cylindrical/sub.i

# Basic example coupling a master and sub app in a 3D cylindrical mesh from an input file
#
# The master app provides field values to the sub app via Functional Expansions, which then performs
# its calculations. The sub app's solution field values are then transferred back to the master app
# and coupled into the solution of the master app solution.
#
# This example couples Functional Expansions via AuxVariable, the recommended approach.
#
# Note: this problem is not light, and may take a few minutes to solve.
[Mesh]
  type = FileMesh
  file = cyl-tet.e
[]

# Non-copy transfers only work with AuxVariable, but nothing will be solved without a variable
# defined. The solution is to define an empty variable tha does nothing, but causes MOOSE to solve
# the AuxKernels that we need.
[Variables]
  [./empty]
  [../]
[]

[AuxVariables]
  [./s]
    order = FIRST
    family = LAGRANGE
  [../]
  [./m_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

# We must have a kernel for every variable, hence this null kernel to match the variable 'empty'
[Kernels]
  [./null_kernel]
    type = NullKernel
    variable = empty
  [../]
[]

[AuxKernels]
  [./reconstruct_m_in]
    type = FunctionSeriesToAux
    function = FX_Basis_Value_Sub
    variable = m_in
  [../]
  [./calculate_s] # Something to make 's' change each time, but allow a converging solution
    type = ParsedAux
    variable = s
    args = m_in
    function = '2*exp(-m_in/0.8)'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = CylindricalDuo
    orders = '5   3' # Axial first, then (r, t) FX
    physical_bounds = '-2.5 2.5   0 0 1' # z_min z_max   x_center y_center radius
    z = Legendre # Axial in z
    disc = Zernike # (r, t) default to unit disc in x-y plane
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Sub
    variable = s
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

modules/solid_mechanics/test/tests/generalized_plane_strain/planestrain.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = square.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./aux_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegralSM
    tensor = stress
    index = 2
    use_displaced_mesh = true
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    use_displaced_mesh = true
    temp = temp
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]

  [./strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xx
    index = 0
  [../]
  [./strain_xy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xy
    index = 3
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_yy
    index = 1
  [../]
  [./strain_zz]
    type = MaterialTensorAux
    tensor = total_strain
    variable = aux_strain_zz
    index = 2
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    thermal_expansion = 0.02
    stress_free_temperature = 0.5
    temp = temp
    formulation = PlaneStrain
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none


# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_periodic_fromfile.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 85
  ny = 85
  nz = 0
  xmax = 250
  ymax = 250
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 8
  var_name_base = gr
  numbub = 15
  bubspac = 22
  radius = 8
  int_width = 10
  invalue = 1
  outvalue = 0.1
  file_name = 'grains.txt'
[]

[Variables]
  [./c]
  [../]
  [./w]
    scaling = 1.0e4
  [../]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalVoronoiVoidIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
  [./c_IC]
    variable = c
    type = PolycrystalVoronoiVoidIC
    structure_type = voids
    polycrystal_ic_uo = voronoi
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 12444
    int_width = 0
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  exodus = true
[]

test/tests/misc/ad_robustness/ad_two_nl_var_transient_diffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [v][]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = ADTimeDerivative
    variable = u
  [../]
  [coupled]
    type = ADCoupledValueTest
    variable = u
    v = v
  []
  [v_diff]
    type = Diffusion
    variable = v
  []
[]

[DGKernels]
  [dummy]
    type = ADDGCoupledTest
    variable = u
    v = v
  []
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 0
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  [dof_map]
    type = DOFMap
    execute_on = 'initial'
  []
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_2/cyl2_template1.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl2_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

test/tests/multiapps/relaxation/sub_relaxed_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
    initial_condition = 1
  [../]
  [./inverse_v]
    initial_condition = 1
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = inverse_v
  [../]
[]

[AuxKernels]
  [./invert_v]
    type = QuotientAux
    variable = inverse_v
    denominator = v
    numerator = 20.0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./Neumann_right]
    type = NeumannBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_abs_tol = 1e-14
[]

[Outputs]
  exodus = true
  execute_on = 'INITIAL TIMESTEP_END'
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_begin
    positions = '0 0 0'
    input_files = sub_relaxed_sub.i
    relaxed_variables = v
    relaxation_factor = 0.94
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

modules/combined/test/tests/power_law_creep/power_law_creep.i

# 1x1x1 unit cube with uniform pressure on top face

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy creep_strain_xx creep_strain_yy creep_strain_zz elastic_strain_yy'
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./u_top_pull]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    factor = -10.0e6
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'bottom top'
    value = 1000.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e11
    poissons_ratio = 0.3
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'power_law_creep'
    tangent_operator = elastic
  [../]
  [./power_law_creep]
    type = PowerLawCreepStressUpdate
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    temperature = temp
  [../]

  [./thermal]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]
  [./density]
    type = Density
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.0
  num_steps = 10
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_3/cyl3_template1.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl3_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/evolving_mass_density/uniform_expand_compress_test_tensors.i

#  Element mass tests

#  This series of tests is designed to compute the mass of elements based on
#  an evolving mass density calculation.  The tests consist of expansion and compression
#  of the elastic patch test model along each axis, uniform expansion and compression,
#  and shear in each direction.  The expansion and compression tests change the volume of
#  the elements.  The corresponding change in density should compensate for this so the
#  mass remains constant.  The shear tests should not result in a volume change, and this
#  is checked too.  The mass calculation is done with the post processor called Mass.

#  The tests/file names are as follows:

#  Expansion and compression along a single axis
#  expand_compress_x_test_out.e
#  expand_compress_y_test_out.e
#  expand_compress_z_test_out.e

#  Volumetric expansion and compression
#  uniform_expand_compress_test.i

#  Zero volume change shear along each axis
#  shear_x_test_out.e
#  shear_y_test_out.e
#  shear_z_test_out.e

#  The resulting mass calculation for these tests should always be = 1.

# This test is a duplicate of the uniform_expand_compress_test.i test for solid mechanics, and the
#   output of this tensor mechanics test is compared to the original
#   solid mechanics output.  The duplication is necessary to test the
#   migrated tensor mechanics version while maintaining tests for solid mechanics.

[Mesh]
  file = elastic_patch.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./rampConstant2]
    type = PiecewiseLinear
    x = '0.00 1.00  2.0   3.00'
    y = '0.00 0.25  0.0  -0.25'
    scale_factor = 1
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./9_y]
    type = DirichletBC
    variable = disp_y
    boundary = 9
    value = 0
  [../]
  [./10_y]
    type = DirichletBC
    variable = disp_x
    boundary = 10
    value = 0
  [../]
  [./14_y]
    type = DirichletBC
    variable = disp_z
    boundary = 14
    value = 0
  [../]

  [./top]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 11
    function = rampConstant2
  [../]
  [./front]
    type = FunctionDirichletBC
    variable = disp_z
    preset = false
    boundary = 13
    function = rampConstant2
  [../]
  [./side]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = 12
    function = rampConstant2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2 3 4 5 6 7'
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

  [./small_strain]
    type = ComputeSmallStrain
    block = ' 1 2 3 4 5 6 7'
  [../]

  [./elastic_stress]
    type = ComputeLinearElasticStress
    block = '1 2 3 4 5 6 7'
  [../]
[]

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10
  l_max_its = 20
  start_time = 0.0
  dt = 1.0
  num_steps = 3
  end_time =3.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
    file_base = uniform_expand_compress_test_out
  [../]
[]

[Postprocessors]
  [./Mass]
    type = Mass
    variable = disp_x
    execute_on = 'initial timestep_end'
  [../]
[]

modules/combined/test/tests/mortar_tm/2drz/frictionless_second/finite.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
  [../]
  [./plank]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

test/tests/parser/cli_multiapp_group/dt_from_master_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1 # This will be constrained by the master solve

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/tensile/random_update.i

# Plasticity models:
# Planar tensile with strength = 1MPa
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 1234
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1234
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./tot_iters]
    type = ElementIntegralMaterialProperty
    mat_prop = plastic_NR_iterations
    outputs = console
  [../]
  [./raw_f0]
    type = ElementExtremeValue
    variable = f0
    outputs = console
  [../]
  [./raw_f1]
    type = ElementExtremeValue
    variable = f1
    outputs = console
  [../]
  [./raw_f2]
    type = ElementExtremeValue
    variable = f2
    outputs = console
  [../]
  [./iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./f0]
    type = FunctionValuePostprocessor
    function = should_be_zero0_fcn
  [../]
  [./f1]
    type = FunctionValuePostprocessor
    function = should_be_zero1_fcn
  [../]
  [./f2]
    type = FunctionValuePostprocessor
    function = should_be_zero2_fcn
  [../]
[]

[Functions]
  [./should_be_zero0_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f0'
  [../]
  [./should_be_zero1_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f1'
  [../]
  [./should_be_zero2_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f2'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E6
    value_residual = 0
    internal_limit = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 1.3E9'
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 1E5
    max_NR_iterations = 100
    yield_function_tol = 1.0E-1
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random_update
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/sliding_block/in_and_out/dirac/frictional_02_penalty.i

#  This is a benchmark test that checks Dirac based frictional
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2 and a friction coefficient
#  of 0.2 is used.  The gold file is run on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./constitutive]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  file_base = frictional_02_penalty_out
  interval = 10
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    formulation = penalty
    friction_coefficient = 0.2
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/combined/test/tests/power_law_hardening/PowerLawHardening.i

# This is a test of the isotropic power law hardening constitutive model.
# In this problem, a single Hex 8 element is fixed at the bottom and pulled at the top
# at a constant rate of 0.1.
# Before yield, stress = strain (=0.1*t) as youngs modulus is 1.0.
# The yield stress for this problem is 0.25 ( as strength coefficient is 0.5 and strain rate exponent is 0.5).
# Therefore, the material should start yielding at t = 2.5 seconds and then follow stress = K *pow(strain,n) or
# stress ~ 0.5*pow(0.1*t,0.5).
#
# This tensor mechanics version of the power law hardening plasticity model matches
# the solid mechanics version for this toy problem under exodiff limits

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[AuxVariables]
  [./total_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t*(0.1)
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = SMALL
    incremental = true
    generate_output = 'stress_yy'
  []
[]

[AuxKernels]
  [./total_strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_yy
    index_i = 1
    index_j = 1
  [../]
 []

[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = top_pull
  [../]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1.0
    poissons_ratio = 0.3
  [../]
  [./power_law_hardening]
    type = IsotropicPowerLawHardeningStressUpdate
    strength_coefficient = 0.5 #K
    strain_hardening_exponent = 0.5 #n
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'power_law_hardening'
    tangent_operator = elastic
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-ksp_snes_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 5.0
  dt = 0.25
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = total_strain_yy
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/solid_mechanics/test/tests/generalized_plane_strain/generalized_plane_strain_field_kinematic.i

# Tests kinematic formulation for the EqualValueBoundaryConstraint.
# The rest of the input file is identical to generalized_plane_strain.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = square.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./strain_zz]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./aux_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegralSM
    tensor = stress
    index = 2
  [../]
  [./min_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = min
  [../]
  [./max_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = max
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    temp = temp
  [../]
[]

[Kernels]
  [./solid_z]
    type = OutOfPlaneStress
    variable = strain_zz
    save_in = saved_z
    disp_x = disp_x
    disp_y = disp_y
    temp = temp
  [../]
[]

[Constraints]
  [./szz]
    type = EqualValueBoundaryConstraint
    variable = strain_zz
    master = '8'
    slave = 10
    penalty = 1e12
    formulation = kinematic
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]

  [./strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xx
    index = 0
  [../]
  [./strain_xy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xy
    index = 3
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_yy
    index = 1
  [../]
  [./strain_zz]
    type = MaterialTensorAux
    tensor = total_strain
    variable = aux_strain_zz
    index = 2
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0     1  100'
    y='0  0.00 0.00'
  [../]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    thermal_expansion = 0.02
    stress_free_temperature = 0.5
    temp = temp
    formulation = PlaneStrain
    strain_zz = strain_zz
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none


# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/MultiSmoothCircleIC/specifiedsmoothcircleIC_test.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 5
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 100
  zmin = 0
  zmax = 100
  elem_type = HEX8
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./diff]
    type = MatDiffusion
    variable = c
    diffusivity = D_v
  [../]
[]

[ICs]
  [./c]
    type = SpecifiedSmoothCircleIC
    variable = c
    x_positions = '10 50 90'
    y_positions = '30 20 80'
    z_positions = '30 50 75'
    radii = '21 25 16'
    invalue = 1.0
    outvalue = 0.0001
    int_width = 4
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Dv]
    type = GenericConstantMaterial
    prop_names = D_v
    prop_values = 0.074802
  [../]
[]

[Postprocessors]
  [./bubbles]
    type = FeatureFloodCount
    variable = c
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 101 ds'
  l_max_its = 20
  l_tol = 1e-4
  nl_max_its = 20
  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-11
  start_time = 0.0
  num_steps = 1
  dt = 100.0
[]

[Outputs]
  exodus = true
[]

modules/heat_conduction/test/tests/transient_heat/transient_heat.i

[Mesh]
  file = cube.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = u
  [../]

  [./ie]
    type = SpecificHeatConductionTimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0.0
  [../]

  [./top]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1.0
  [../]
[]

[Materials]
  [./constant]
    type = HeatConductionMaterial
    block = 1
    thermal_conductivity = 1
    specific_heat = 1
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 1
    prop_names = density
    prop_values = 1
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



  start_time = 0.0
  num_steps = 5
  dt = .1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_4/brick4_template2_sm.i

[Mesh]
  file = brick4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_x
  [../]
  [./disp_x64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_x
  [../]
  [./disp_y59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_y
  [../]
  [./disp_y64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x59 disp_y59 disp_x64 disp_y64 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

test/tests/meshgenerators/subdomain_bounding_box_generator/subdomain_bounding_box_generator_inside.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 10
    xmax = 1
    ymax = 1
    #uniform_refine = 2
  []

  [./subdomains]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    bottom_left = '0.1 0.1 0'
    block_id = 1
    top_right = '0.9 0.9 0'
  []
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = MatCoefDiffusion
    variable = u
    conductivity = 'k'
    block = '0 1'
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./outside]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'k'
    prop_values = 1
  [../]
  [./inside]
    type = GenericConstantMaterial
    block = 1
    prop_names = 'k'
    prop_values = 0.1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/Rayleigh_damping/Newmark_time_integration/Rayleigh_Newmark.i

# Test for rayleigh damping implemented using Newmark time integration

# The test is for an 1-D bar element of unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# zeta and eta correspond to the stiffness and mass proportional
# rayleigh damping beta and gamma are Newmark time integration
# parameters The equation of motion in terms of matrices is:
#
# M*accel + eta*M*vel + zeta*K*vel + K*disp = P*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + eta*density*vel + zeta*d/dt(Div stress) + Div stress = P
#
# The first two terms on the left are evaluated using the Inertial
# force kernel The next two terms on the left involving zeta ise
# evaluated using the StressDivergence Kernel The residual due to
# Pressure is evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure
# becomes constant.
[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./DynamicTensorMechanics]
    use_displaced_mesh = true
    zeta = 0.1
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
    eta=0.1
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
    eta=0.1
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
    eta = 0.1
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
     type = RankTwoAux
     variable = stress_yy
     rank_two_tensor = stress
     index_i = 1
     index_j = 1
  [../]
  [./strain_yy]
     type = RankTwoAux
     variable = strain_yy
     rank_two_tensor = total_strain
     index_i = 1
     index_j = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
    boundary = bottom
    function = pressure
    factor = 1
    [../]
  [../]
[]

[Materials]
  [./elastic]
    type = ComputeIsotropicElasticityTensor
    block = '0'
    youngs_modulus = 210e+09
    poissons_ratio = 0
  [../]
  [./elastic_strain]
    type= ComputeFiniteStrain
    block = '0'
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
    block = '0'
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]
[]


[Executioner]

  type = Transient
  start_time = 0
  end_time = 2
  dtmax = 0.1
  dtmin = 0.1
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
  [./vel_ic]
    type = PiecewiseLinear
    x = '0.0 0.5 1.0'
    y = '0.1 0.1 0.1'
    scale_factor = 1
  [../]
[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
   [./disp]
     type = NodalMaxValue
     variable = disp_y
     boundary = bottom
   [../]
   [./vel]
     type = NodalMaxValue
     variable = vel_y
     boundary = bottom
   [../]
   [./accel]
     type = NodalMaxValue
     variable = accel_y
     boundary = bottom
   [../]
   [./stress_yy]
      type = ElementAverageValue
      variable = stress_yy
   [../]
   [./strain_yy]
      type = ElementAverageValue
      variable = strain_yy
   [../]

[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/mass01_fully_saturated.i

# FullySaturatedMassTimeDerivative
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.5
      bulk_modulus = 1.5
      density0 = 1.0
    [../]
  [../]
[]

[Variables]
  [./pp]
  [../]
  [./T]
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./disp_y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./disp_z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
  [./pp]
    type = RandomIC
    variable = pp
    min = 0
    max = 1
  [../]
  [./T]
    type = RandomIC
    variable = T
    min = 0
    max = 1
  [../]
[]

[BCs]
  # necessary otherwise volumetric strain rate will be zero
  [./disp_x]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./disp_y]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'left right'
  [../]
  [./disp_z]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'left right'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowFullySaturatedMassTimeDerivative
    variable = pp
    coupling_type = ThermoHydroMechanical
    biot_coefficient = 0.9
  [../]
  [./dummyT]
    type = TimeDerivative
    variable = T
  [../]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp disp_x disp_y disp_z T'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1E20
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 2.0
    shear_modulus = 3.0
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = T
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = the_simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst  # only the initial vaue of this is ever used
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.9
    fluid_bulk_modulus = 1.5
    solid_bulk_compliance = 0.5
  [../]
  [./thermal_expansion]
    type = PorousFlowConstantThermalExpansionCoefficient
    biot_coefficient = 0.9
    fluid_coefficient = 0.5
    drained_coefficient = 0.4
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 2
[]

[Outputs]
  exodus = false
[]

modules/richards/test/tests/buckley_leverett/bl22.i

# two-phase version
# super-sharp front version
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 150
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-4 1E-3 1E-2 2E-2 5E-2 6E-2 0.1 0.2'
    x =  '0    1E-2 1E-1 1    5    20   40  41'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E6
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-4
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-4
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
  [./bounds_dummy]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
  [./richardsppenalty]
    type = RichardsPPenalty
    variable = pgas
    a = 1E-18
    lower_var = pwater
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[Bounds]
  [./pwater_bounds]
    type = BoundsAux
    variable = bounds_dummy
    bounded_variable = pwater
    upper = 1E7
    lower = -110000
  [../]
[]


[ICs]
  [./water_ic]
    type = FunctionIC
    variable = pwater
    function = initial_water
  [../]
  [./gas_ic]
    type = FunctionIC
    variable = pgas
    function = initial_gas
  [../]
[]

[BCs]
  [./left_w]
    type = DirichletBC
    variable = pwater
    boundary = left
    value = 1E6
  [../]
  [./left_g]
    type = DirichletBC
    variable = pgas
    boundary = left
    value = 1E6
  [../]
  [./right_w]
    type = DirichletBC
    variable = pwater
    boundary = right
    value = -100000
  [../]
  [./right_g]
    type = DirichletBC
    variable = pgas
    boundary = right
    value = 0
  [../]
[]


[Functions]
  [./initial_water]
    type = ParsedFunction
    value = 1000000*(1-min(x/5,1))-100000*(max(x-5,0)/max(abs(x-5),1E-10))
  [../]
  [./initial_gas]
    type = ParsedFunction
    value = max(1000000*(1-x/5),0)+1000
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 1E-6'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'standard'

  [./bounded]
  # must use --use-petsc-dm command line argument
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type -ksp_rtol -ksp_atol'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 50 vinewtonssls 1E-20 1E-20'
  [../]

  [./standard]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 20 1E-20 1E-20'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 50

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = bl22
  [./exodus]
    type = Exodus
    interval = 100000
    hide = pgas
    execute_on = 'initial final timestep_end'
  [../]
[]

modules/combined/test/tests/contact/8ElemTensionRelease.i

[Mesh]
  file = 8ElemTensionRelease.e
  partitioner = centroid
  centroid_partitioner_direction = x
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1      2 3'
    y = '0 0.0001 0 -.0001'
  [../]
[]

[AuxVariables]
  [./status]
  [../]
  [./pid]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  []
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = frictionless
    tangential_tolerance = 0.01
    system = Constraint
  [../]
[]

[AuxKernels]
  [./pid]
    type = ProcessorIDAux
    variable = pid
    execute_on = 'initial timestep_end'
  [../]
  [./status]
    type = PenetrationAux
    quantity = mechanical_status
    variable = status
    boundary = 3
    paired_boundary = 2
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./lateral]
    type = DirichletBC
    variable = disp_x
    boundary = '1 4'
    value = 0
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = up
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 10
  dt = 0.1
  num_steps = 30

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/test_jacobian/jacobian_test_planestrain.i

# This test is designed to test the jacobian for a single
# element with volumetric locking correction.
# This test uses small plane strain formulations.

# To test the jacobian obtained from finite strain formulation comment out
# formulation = NonlinearPlaneStrain in the materials block.

# The mesh contains one element whose y displacement is zero at
# the bottom surface (y=0) and -1.0 at the top surface (y=1).

# Result: The hand coded jacobian matches well with the finite
# difference jacobian with a error norm of 2.9e-15 for the small planestrain
# formulation.

# For the finite strain formulation, the error norm is in the order of 2.3e-8.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[Variables]
  [./x_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./y_disp]
    order = FIRST
    family = LAGRANGE
  [../]

[]

[SolidMechanics]
  [./solid]
    disp_x = x_disp
    disp_y = y_disp
  [../]
[]

[BCs]

  [./y_force]
    type = NeumannBC
    variable = y_disp
    boundary = top
    value = -1.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = y_disp
    boundary = bottom
    value = 0.0
  [../]

[]

[Materials]
  [./elastic]
    type = Elastic
    block = 0
    disp_x = x_disp
    disp_y = y_disp
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    formulation = PlaneStrain
  [../]
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient #Transient

  solve_type = NEWTON
  petsc_options = '-snes_check_jacobian -snes_check_jacobian_view'

  l_max_its = 100
  nl_abs_tol = 1e-4
  start_time = 0.0
  num_steps = 1
  dt = 0.005
  dtmin = 0.005
  end_time = 0.005
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/theis/th_lumped_22.i

# two-phase, fully-saturated
# production
# lumped
[Mesh]
  type = FileMesh
  file = th02_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1 2 4 20'
    x = '0 1 10 100'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]

  [./total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[ICs]
  [./water_ic]
    type = FunctionIC
    variable = pwater
    function = initial_pressure
  [../]
  [./gas_ic]
    type = FunctionIC
    variable = pgas
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsPolyLineSink
    pressures = '-1E9 1E9'
    fluxes = '200 200'
    point_file = th01.points
    SumQuantityUO = total_outflow_mass
    variable = pwater
  [../]
[]


[Postprocessors]
  [./flow_report]
    type = RichardsPlotQuantity
    uo = total_outflow_mass
  [../]
  [./p50]
    type = PointValue
    variable = pwater
    point = '50 0 0'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E5
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    mat_porosity = 0.1
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    viscosity = '1E-3 1E-5'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               2E-7 1E-10 20 1E-10 1E-100'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 100
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = th_lumped_22
  exodus = true
  csv = true
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/frictional_04_penalty.i

#  This is a benchmark test that checks constraint based frictional
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2 and a friction coefficient
#  of 0.4 is used.  The gold file is run on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./left_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm     lu    20    101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-3
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  # csv = true
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    friction_coefficient = 0.4
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/tensor_mechanics/test/tests/radial_disp_aux/cylinder_3d_cartesian.i

# The purpose of this set of tests is to check the values computed
# by the RadialDisplacementAux AuxKernel. They should match the
# radial component of the displacment for a cylindrical or spherical
# model.
# This particular model is of a cylinder subjected to uniform thermal
# expansion represented using a 3D Cartesian model.

[Mesh]
  type = FileMesh
  file = cylinder_sector_3d.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  order = SECOND
  family = LAGRANGE
[]

[AuxVariables]
  [./temp]
  [../]
  [./rad_disp]
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t+300.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    eigenstrain_names = eigenstrain
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
    use_displaced_mesh = false
  [../]
  [./raddispaux]
    type = RadialDisplacementCylinderAux
    variable = rad_disp
    origin = '0 0 0'
    axis_vector = '0 0 1'
  [../]
[]

[BCs]
  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = '3 4'
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 300
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '51'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

  start_time = 0.0
  end_time = 1
  dt = 1
  dtmin = 1
[]

[Outputs]
 csv = true
 exodus = true
[]

#[Postprocessors]
#  [./strain_xx]
#    type = SideAverageValue
#    variable =
#    block = 0
#  [../]
#[]

modules/richards/test/tests/jacobian_1/jn30.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true
# wellbore = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = jn30.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = 1E12
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn30
  exodus = false
[]

modules/porous_flow/test/tests/radioactive_decay/exponential_decay.i

# ExponentialDecay
# Note that we do not get u - ref = (u_0 - ref) * exp(-rate * t)
# because of the time discretisation.  We are solving
# the equation
# (u(t+dt) - u(t))/dt = -rate * (u(t+dt) - ref)
# which has solution
# u(t+dt) = (u(t) + rate * ref * dt) / (1 + rate * dt)
# With u(0)=2, rate=1.5, ref=1 and dt=0.2 we get
# u(0.2) = 1.769
# u(0.4) = 1.592
# u(0.6) = 1.455
# u(0.8) = 1.350
# u(1.0) = 1.269
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[Variables]
  [./u]
    initial_condition = 2
  [../]
[]

[Kernels]
  [./time_derivative]
    type = TimeDerivative
    variable = u
  [../]
  [./exp_decay]
    type = PorousFlowExponentialDecay
    variable = u
    rate = 1.5
    reference = 1.0
  [../]
[]

[Postprocessors]
  [./u]
    type = PointValue
    variable = u
    point = '0 0 0'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.2
  end_time = 1
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/dirackernels/theis3.i

# Two phase Theis problem: Flow from single source
# Constant rate injection 0.5 kg/s
# 1D cylindrical mesh

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmax = 2000
  bias_x = 1.05
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = Y
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./ppwater]
    initial_condition = 20e6
  [../]
  [./sgas]
    initial_condition = 0
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = sgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 1e5
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      viscosity = 1e-3
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 10
      viscosity = 1e-4
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
    compute_enthalpy = false
    compute_internal_energy = false
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
    compute_enthalpy = false
    compute_internal_energy = false
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 1
  [../]
[]

[BCs]
  [./rightwater]
    type = DirichletBC
    boundary = right
    value = 20e6
    variable = ppwater
  [../]
[]

[DiracKernels]
  [./source]
    type = PorousFlowSquarePulsePointSource
    point = '0 0 0'
    mass_flux = 0.5
    variable = sgas
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-8       1E-10 20'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1e4
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 10
    growth_factor = 2
  [../]
[]

[VectorPostprocessors]
  [./line]
    type = NodalValueSampler
    sort_by = x
    variable = 'ppwater sgas'
    execute_on = 'timestep_end'
  [../]
[]

[Postprocessors]
  [./ppwater]
    type = PointValue
    point =  '4 0 0'
    variable = ppwater
  [../]
  [./sgas]
    type = PointValue
    point = '4 0 0'
    variable = sgas
  [../]
  [./massgas]
    type = PorousFlowFluidMass
    fluid_component = 1
  [../]
[]

[Outputs]
  file_base = theis3
  print_linear_residuals = false
  perf_graph = true
  [./csv]
    type = CSV
    execute_on = timestep_end
    execute_vector_postprocessors_on = final
  [../]
[]

test/tests/postprocessors/print_perf_data/use_log_data_no_print.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./elapsed]
    type = PerfGraphData
    section_name = "Root"
    data_type = total
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

modules/richards/test/tests/gravity_head_2/gh_bounded_17.i

# unsaturated = false
# gravity = true
# supg = true
# transient = true
# using RichardsMultiphaseProblem to bound pgas.  i take big timesteps to illustrate that the bounding works.  Note that s_res for gas = 0, in order to prevent the simulation from trying to reduce pgas at small x in order to conserve fluid mass by decreasing the density.  Because there is zero gas to begin with, but due to numerical inprecisions there is some gas at the end, the mass error for the gas is 0.5.

[Problem]
  type = RichardsMultiphaseProblem
  bounded_var = pgas
  lower_var = pwater
[]

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 0.5E-3'
  gravity = '-1 0 0'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.00
    sum_s_res = 0.1
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 1
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]

  # the following "dummy" variable is simply used for exception testing RichardsMultiphaseProblem
  # It is not part of the "gravity head" simulation
  [./dummy_var]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-pc_factor_shift_type'
    petsc_options_value = 'nonzero'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E6
  dtmin = 1E6
  line_search = bt

  nl_rel_tol = 1.e-6
  nl_max_its = 10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh_bounded_17
  csv = true
[]

modules/combined/test/tests/mortar_tm/2d/ad_frictionless_fir/finite_rr.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_rr'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
    extra_vector_tags = 'ref'
    use_automatic_differentiation = true
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
  nl_abs_tol = 1e-7
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/richards/test/tests/gravity_head_1/gh23.i

# investigating validity of immobile saturation
# 50 elements, with SUPG

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 50
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1 10 100 1000 10000'
    x = '0 10 100 1000 10000'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.3
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E-6
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -1.0
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E0
  end_time = 1E5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = gh23
  execute_on = 'timestep_end final'
  interval = 10000
  exodus = true
  [./console]
    interval = 1
    type = Console
  [../]
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_fully_saturated.i

# Pressure pulse in 1D with 1 phase - transient
# using the PorousFlowFullySaturatedDarcyBase Kernel
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 2E6
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./flux]
    type = PorousFlowFullySaturatedDarcyBase
    variable = pp
    gravity = '0 0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pp
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-20 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[Postprocessors]
  [./p005]
    type = PointValue
    variable = pp
    point = '5 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p015]
    type = PointValue
    variable = pp
    point = '15 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p025]
    type = PointValue
    variable = pp
    point = '25 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p035]
    type = PointValue
    variable = pp
    point = '35 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p045]
    type = PointValue
    variable = pp
    point = '45 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p055]
    type = PointValue
    variable = pp
    point = '55 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p065]
    type = PointValue
    variable = pp
    point = '65 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p075]
    type = PointValue
    variable = pp
    point = '75 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p085]
    type = PointValue
    variable = pp
    point = '85 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p095]
    type = PointValue
    variable = pp
    point = '95 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  file_base = pressure_pulse_1d_fully_saturated
  print_linear_residuals = false
  csv = true
[]

modules/combined/test/tests/poro_mechanics/pp_generation_unconfined.i

# A sample is constrained on all sides, except its top
# and its boundaries are
# also impermeable.  Fluid is pumped into the sample via a
# volumetric source (ie m^3/second per cubic meter), and the
# rise in the top surface, porepressure, and stress are observed.
#
# Source = s  (units = 1/second)
#
# Expect:
# strain_zz = disp_z = BiotCoefficient*BiotModulus*s*t/((bulk + 4*shear/3) + BiotCoefficient^2*BiotModulus)
# porepressure = BiotModulus*(s*t - BiotCoefficient*strain_zz)
# stress_xx = (bulk - 2*shear/3)*strain_zz   (remember this is effective stress)
# stress_xx = (bulk + 4*shear/3)*strain_zz   (remember this is effective stress)
#
# Parameters:
# Biot coefficient = 0.3
# Porosity = 0.1
# Bulk modulus = 2
# Shear modulus = 1.5
# fluid bulk modulus = 1/0.3 = 3.333333
# 1/Biot modulus = (1 - 0.3)*(0.3 - 0.1)/2 + 0.1*0.3 = 0.1. BiotModulus = 10
#
# s = 0.1
#
# Expect
# disp_z = 0.3*10*s*t/((2 + 4*1.5/3) + 0.3^2*10) = 0.612245*s*t
# porepressure = 10*(s*t - 0.3*0.612245*s*t) = 8.163265*s*t
# stress_xx = (2 - 2*1.5/3)*0.612245*s*t = 0.612245*s*t
# stress_zz = (2 + 4*shear/3)*0.612245*s*t = 2.44898*s*t


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back'
  [../]
[]


[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PoroMechanicsCoupling
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PoroMechanicsCoupling
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PoroMechanicsCoupling
    variable = disp_z
    component = 2
  [../]
  [./poro_timederiv]
    type = PoroFullSatTimeDerivative
    variable = porepressure
  [../]
  [./source]
    type = BodyForce
    function = 0.1
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]



[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./poro_material]
    type = PoroFullSatMaterial
    porosity0 = 0.1
    biot_coefficient = 0.3
    solid_bulk_compliance = 0.5
    fluid_bulk_compliance = 0.3
    constant_porosity = true
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]

[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = pp_generation_unconfined
  [./csv]
    type = CSV
  [../]
[]

modules/porous_flow/test/tests/jacobian/mass07.i

# 1phase with MD_Gaussian (var = log(mass-density) with Gaussian capillary) formulation
# constant-bulk density, constant porosity, 1component
# unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./md]
  [../]
[]

[ICs]
  [./md]
    type = RandomIC
    min = -1
    max = -0.224 # unsaturated for md<log(density_P0=0.8)=-0.223
    variable = md
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = md
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'md'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 0.8
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseMD_Gaussian
    mass_density = md
    al = 1.1
    density_P0 = 0.8
    bulk_modulus = 1.5
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/solid_mechanics/test/tests/cracking/cracking_function.i

#
# Simple pull test for cracking.
#
#
[Mesh]
   file = plate.e
   displacements = 'disp_x disp_y'
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./crack_xx_flags]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./crack_yy_flags]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./displ]
    type = PiecewiseLinear
    x = '0 0.1 0.2 0.3 0.4'
    y = '0 0.001 0 -0.001 0'
  [../]
  [./pressure]
    type = PiecewiseLinear
    x = '0 0.4'
    y = '1.0e5 1.0e5'
  [../]
  [./fstress]
    type = ParsedFunction
    value = 'if(x > 0.667, 1.1e6, 0) + if(x<=0.667, 1.2e6, 0)'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./crack_xx_flags]
    type = MaterialRealVectorValueAux
    property = crack_flags
    variable = crack_xx_flags
    component = 0
    block = 1
  [../]
  [./crack_yy_flags]
    type = MaterialRealVectorValueAux
    property = crack_flags
    variable = crack_yy_flags
    component = 1
    block = 1
  [../]
  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    tensor = stress
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    variable = stress_zz
    tensor = stress
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    variable = stress_xy
    tensor = stress
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    variable = stress_yz
    tensor = stress
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    variable = stress_zx
    tensor = stress
    index = 5
  [../]

  [./strain_xx]
    type = MaterialTensorAux
    variable = strain_xx
    tensor = total_strain
    index = 0
  [../]

  [./strain_yy]
    type = MaterialTensorAux
    variable = strain_yy
    tensor = total_strain
    index = 1
  [../]

  [./strain_zz]
    type = MaterialTensorAux
    variable = strain_zz
    tensor = total_strain
    index = 2
  [../]

  [./strain_xy]
    type = MaterialTensorAux
    variable = strain_xy
    tensor = total_strain
    index = 3
  [../]

  [./strain_yz]
    type = MaterialTensorAux
    variable = strain_yz
    tensor = total_strain
    index = 4
  [../]

  [./strain_zx]
    type = MaterialTensorAux
    variable = strain_zx
    tensor = total_strain
    index = 5
  [../]


[]

[BCs]
  [./pull]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '3 4'
    function = displ
  [../]

  [./pin_x]
    type = DirichletBC
    variable = disp_x
    boundary =  '1 2'
    value = 0
  [../]
  [./pin_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 4'
    value = 0.0
  [../]
[]

[Materials]
  [./SolidModel]
    type = Elastic
    block = 1
    youngs_modulus = 200.0e7
    poissons_ratio = 0.0 #.3
    cracking_stress_function  = fstress
    cracking_stress = 1.2e6
    cracking_residual_stress = 0.0
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[Postprocessors]
  [./elem_stress_xx]
    type = ElementalVariableValue
    variable = stress_xx
    elementid = 0
  [../]
  [./elem_strain_xx]
    type = ElementalVariableValue
    variable = strain_xx
    elementid = 0
  [../]
  [./elem_crack_flags_x]
    type = ElementalVariableValue
    variable = crack_xx_flags
    elementid = 0
  [../]
  [./elem_crack_flags_y]
    type = ElementalVariableValue
    variable = crack_yy_flags
    elementid = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK

  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101               '

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 0.2
  dt = 0.0025
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  csv = true
[]

modules/tensor_mechanics/test/tests/thermal_expansion/constant_expansion_stress_free_temp.i

# This test involves only thermal expansion strains on a 2x2x2 cube of approximate
# steel material; however, in this case the stress free temperature of the material
# has been set to 200K so that there is an initial delta temperature of 100K.

# An initial temperature of 300K is given for the material,
# and an auxkernel is used to calculate the temperature in the entire cube to
# raise the temperature each time step.  The final temperature is 675K
# The thermal strain increment should therefore be
#     (675K - 300K) * 1.3e-5 1/K + 100K * 1.3e-5 1/K = 6.175e-3 m/m.

# This test uses a start up step to identify problems in the calculation of
# eigenstrains with a stress free temperature that is different from the initial
# value of the temperature in the problem

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
    initial_condition = 300.0
  [../]
  [./eigenstrain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eigenstrain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eigenstrain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t*(5000.0)+300.0
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = SMALL
        incremental = true
        add_variables = true
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
  [../]
  [./eigenstrain_yy]
    type = RankTwoAux
    rank_two_tensor = eigenstrain
    variable = eigenstrain_yy
    index_i = 1
    index_j = 1
    execute_on = 'initial timestep_end'
  [../]
  [./eigenstrain_xx]
    type = RankTwoAux
    rank_two_tensor = eigenstrain
    variable = eigenstrain_xx
    index_i = 0
    index_j = 0
    execute_on = 'initial timestep_end'
  [../]
  [./eigenstrain_zz]
    type = RankTwoAux
    rank_two_tensor = eigenstrain
    variable = eigenstrain_zz
    index_i = 2
    index_j = 2
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_yy
    index_i = 1
    index_j = 1
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_xx
    index_i = 0
    index_j = 0
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_zz
    index_i = 2
    index_j = 2
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 200
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = -0.0125
  n_startup_steps = 1
  end_time = 0.075
  dt = 0.0125
  dtmin = 0.0001
[]

[Outputs]
  exodus = true
[]

[Postprocessors]
  [./eigenstrain_xx]
    type = ElementAverageValue
    variable = eigenstrain_xx
    execute_on = 'initial timestep_end'
  [../]
  [./eigenstrain_yy]
    type = ElementAverageValue
    variable = eigenstrain_yy
    execute_on = 'initial timestep_end'
  [../]
  [./eigenstrain_zz]
    type = ElementAverageValue
    variable = eigenstrain_zz
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_xx]
    type = ElementAverageValue
    variable = total_strain_xx
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_yy]
    type = ElementAverageValue
    variable = total_strain_yy
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_zz]
    type = ElementAverageValue
    variable = total_strain_zz
    execute_on = 'initial timestep_end'
  [../]
  [./temperature]
    type = AverageNodalVariableValue
    variable = temp
    execute_on = 'initial timestep_end'
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_1/cyl1_template1_sm.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[Mesh]
  file = cyl1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/gap_heat_transfer_htonly/planar_xy.i

# 1-D Gap Heat Transfer Test without mechanics
#
# This test exercises 1-D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of two element blocks in the x-y plane.  Each element block
# is a square. They sit next to one another with a unit between them.
#
# The conductivity of both blocks is set very large to achieve a uniform temperature
# across each block. The temperature of the far bottom boundary
# is ramped from 100 to 200 over one time unit.  The temperature of the far top
# boundary is held fixed at 100.
#
# A simple analytical solution is possible for the heat flux between the blocks:
#
# Flux = (T_left - T_right) * (gapK/gap_width)
#
# The gap conductivity is specified as 1, thus
#
# gapK(Tavg) = 1.0*Tavg
#
# The heat flux across the gap at time = 1 is then:
#
# Flux = 100 * (1.0/1.0) = 100
#
# For comparison, see results from the flux post processors.  These results
# are the same as for the unit 1-D gap heat transfer between two unit cubes.



[Mesh]
  file = simple_2D.e
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '100 200 200'
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_cond]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]


[BCs]
  [./temp_far_bottom]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]
  [./temp_far_top]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[AuxKernels]
  [./conductance]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_cond
    boundary = 2
  [../]
[]

[Materials]
  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 100000000.0
  [../]
  [./density]
    type = Density
    block = '1 2'
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'
  nl_rel_tol = 1e-14
  l_tol = 1e-3
  l_max_its = 100

  dt = 1e-1
  end_time = 1.0
[]

[Postprocessors]
  [./temp_bottom]
    type = SideAverageValue
    boundary = 2
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./temp_top]
    type = SideAverageValue
    boundary = 3
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./flux_bottom]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
    execute_on = 'initial timestep_end'
  [../]

  [./flux_top]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/fflux06.i

# 1phase with MD_Gaussian (var = log(mass-density) with Gaussian capillary) formulation
# constant viscosity, constant insitu permeability
# density with constant bulk, Corey relative perm, nonzero gravity
# unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./md]
  [../]
[]

[ICs]
  [./md]
    type = RandomIC
    min = -1
    max = -0.224 # unsaturated for md<log(density_P0=0.8)=-0.223
    variable = md
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = md
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'md'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseMD_Gaussian
    mass_density = md
    al = 1.1
    density_P0 = 0.8
    bulk_modulus = 1.5
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/combined/examples/phase_field-mechanics/LandauPhaseTrans.i

#
# Martensitic transformation
# Chemical driving force described by Landau Polynomial
# Coupled with elasticity (Mechanics)
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 100
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 100

  elem_type = QUAD4
[]

[Variables]
  [./eta1]
    [./InitialCondition]
      type = RandomIC
      min = 0
      max = 0.1
    [../]
  [../]
  [./eta2]
    [./InitialCondition]
      type = RandomIC
      min = 0
      max = 0.1
    [../]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    generate_output = 'stress_xx stress_yy'
    eigenstrain_names = 'eigenstrain1 eigenstrain2'
  [../]
[]

[Kernels]
  [./eta_bulk1]
    type = AllenCahn
    variable = eta1
    args = 'eta2'
    f_name = F
  [../]
  [./eta_bulk2]
    type = AllenCahn
    variable = eta2
    args = 'eta1'
    f_name = F
  [../]
  [./eta_interface1]
    type = ACInterface
    variable = eta1
    kappa_name = kappa_eta
  [../]
  [./eta_interface2]
    type = ACInterface
    variable = eta2
    kappa_name = kappa_eta
  [../]

  [./deta1dt]
    type = TimeDerivative
    variable = eta1
  [../]
  [./deta2dt]
    type = TimeDerivative
    variable = eta2
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'L kappa_eta'
    prop_values = '1 1'
  [../]

  [./chemical_free_energy]
    type = DerivativeParsedMaterial
    f_name = Fc
    args = 'eta1 eta2'
    constant_names = 'A2 A3 A4'
    constant_expressions = '0.2 -12.6 12.4'
    function = 'A2/2*(eta1^2+eta2^2) + A3/3*(eta1^3+eta2^3) + A4/4*(eta1^2+eta2^2)^2'
    enable_jit = true
    derivative_order = 2
  [../]

  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '700 300 300 700 300 700 300 300 300'
    fill_method = symmetric9
  [../]

  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./var_dependence1]
    type = DerivativeParsedMaterial
    f_name = var_dep1
    args = 'eta1'
    function = eta1
    enable_jit = true
    derivative_order = 2
  [../]
  [./var_dependence2]
    type = DerivativeParsedMaterial
    f_name = var_dep2
    args = 'eta2'
    function = eta2
    enable_jit = true
    derivative_order = 2
  [../]

  [./eigenstrain1]
    type = ComputeVariableEigenstrain
    eigen_base = '0.1 -0.1 0 0 0 0'
    prefactor = var_dep1
    args = 'eta1'
    eigenstrain_name = eigenstrain1
  [../]

  [./eigenstrain2]
    type = ComputeVariableEigenstrain
    eigen_base = '-0.1 0.1 0 0 0 0'
    prefactor = var_dep2
    args = 'eta2'
    eigenstrain_name = eigenstrain2
  [../]

  [./elastic_free_energy]
    type = ElasticEnergyMaterial
    f_name = Fe
    args = 'eta1 eta2'
    derivative_order = 2
  [../]

  [./totol_free_energy]
    type = DerivativeSumMaterial
    f_name = F
    sum_materials = 'Fc Fe'
    args = 'eta1 eta2'
    derivative_order = 2
  [../]
[]

[BCs]
  [./all_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'top bottom left right'
    value = 0
  [../]
  [./all_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'top bottom left right'
    value = 0
  [../]
[]

[Preconditioning]
  # active = ' '
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  # this gives best performance on 4 cores
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type  -sub_pc_type '
  petsc_options_value = 'asm       lu'

  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10
  start_time = 0.0
  num_steps = 10

  [./TimeStepper]
    type = IterationAdaptiveDT
    optimal_iterations = 9
    iteration_window = 2
    growth_factor = 1.1
    cutback_factor = 0.75
    dt = 0.3
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/porous_flow/test/tests/flux_limited_TVD_advection/jacobian_01.i

# Checking the Jacobian of Flux-Limited TVD Advection, using flux_limiter_type = none
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  xmin = 0
  xmax = 1
  ny = 4
  ymin = -1
  ymax = 2
  bias_y = 1.5
  nz = 4
  zmin = 1
  zmax = 2
  bias_z = 0.8
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u]
    type = RandomIC
    variable = u
  [../]
[]

[Kernels]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = u
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = none
    u = u
    velocity = '1 -2 1.5'
  [../]
[]


[Preconditioning]
  active = smp
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
  num_steps = 1
  dt = 1
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking_exponential.i

#
# Test to exercise the exponential stress release
#
# Stress vs. strain should show a linear relationship until cracking,
#   an exponential stress release, a linear relationship back to zero
#   strain, a linear relationship with the original stiffness in
#   compression and then back to zero strain, a linear relationship
#   back to the exponential curve, and finally further exponential
#   stress release.
#

[Mesh]
  file = cracking_test.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./displx]
    type = PiecewiseLinear
    x = '0 1       2  3      4 5       6'
    y = '0 0.00175 0 -0.0001 0 0.00175 0.0035'
  [../]
  [./disply]
    type = PiecewiseLinear
    x = '0 5 6'
    y = '0 0 .00175'
  [../]
  [./displz]
    type = PiecewiseLinear
    x = '0 2 3'
    y = '0 0 .0035'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[BCs]
  [./pullx]
    type = FunctionDirichletBC
    #type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = displx
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = '11 12'
    value = 0.0
  [../]

  [./move_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = '15 16'
    function = disply
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = '3'
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 186.5e9
    poissons_ratio = .316
  [../]
  [./elastic_stress]
    type = ComputeSmearedCrackingStress
    cracking_stress = 119.3e6
    softening_models = exponential_softening
  [../]
  [./exponential_softening]
    type = ExponentialSoftening
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type'
  petsc_options_value = '101                lu'

  line_search = 'none'
  l_max_its = 100
  l_tol = 1e-6

  nl_max_its = 10
  nl_rel_tol = 1e-12
  nl_abs_tol = 1.e-4

  start_time = 0.0
  dt = 0.02
  dtmin = 0.02
  num_steps = 300
[]

[Outputs]
  exodus = true
[]

modules/misc/test/tests/coupled_directional_mesh_height_interpolation/coupled_directional_mesh_height_interpolation.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 1
  xmax = 2
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./stretch]
  [../]
[]

[Functions]
  [./stretch_func]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./interpolation]
    type = CoupledDirectionalMeshHeightInterpolation
    variable = disp_x
    direction = x
    execute_on = timestep_begin
    coupled_var = stretch
  [../]
  [./stretch_aux]
    type = FunctionAux
    variable = stretch
    function = stretch_func
    execute_on = timestep_begin
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
    use_displaced_mesh = true
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = 1
    use_displaced_mesh = true
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 1

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_viscoplasticity_stress_update/lps_single.i

# This test provides an example of an individual LPS viscoplasticity model

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmax = 0.002
  ymax = 0.002
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  add_variables = true
  generate_output = 'strain_xx strain_yy strain_xy hydrostatic_stress vonmises_stress'
  use_automatic_differentiation = true
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0 0.1'
    y = '0 1e-5'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ADComputeMultiplePorousInelasticStress
    inelastic_models = lps
    initial_porosity = 0.1
    outputs = all
  [../]

  [./lps]
    type = ADViscoplasticityStressUpdate
    coefficient = 'coef'
    power = 3
    outputs = all
    relative_tolerance = 1e-11
  [../]
  [./coef]
    type = ParsedMaterial
    f_name = coef
    # Example of creep power law
    function = '1e-18 * exp(-4e4 / 1.987 / 1200)'
  [../]
[]

[BCs]
  [./no_disp_x]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_disp_y]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./pull_disp_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pull
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 0.01
  end_time = 0.12
[]

[Postprocessors]
  [./disp_x]
    type = SideAverageValue
    variable = disp_x
    boundary = right
  [../]
  [./disp_y]
    type = SideAverageValue
    variable = disp_y
    boundary = top
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
  [../]
  [./dt]
    type = TimestepSize
  [../]
  [./num_lin]
    type = NumLinearIterations
    outputs = console
  [../]
  [./num_nonlin]
    type = NumNonlinearIterations
    outputs = console
  [../]
  [./eff_creep_strain]
    type = ElementAverageValue
    variable = effective_viscoplasticity
  [../]
  [./porosity]
    type = ElementAverageValue
    variable = porosity
  [../]
[]

[Outputs]
  csv = true
[]

modules/richards/test/tests/gravity_head_2/gh18.i

# with immobile saturation
# unsaturated = true
# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 0.5E1 0.5E2 0.4E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.4
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.3
    n = 2
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = gh18
  execute_on = 'timestep_end final'
  interval = 100000
  exodus = true
  [./console]
    type = Console
    interval = 1
  [../]
[]

test/tests/userobjects/setup_interface_count/side.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    ny = 2
  []
  [./right_side]
    input = gen
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0 0 0'
    top_right = '1 0.5 0'
    block_id = 1
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [./initial] # 1 per simulation
    type = SideSetupInterfaceCount
    count_type = 'initial'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./timestep] # once per timestep
    type = SideSetupInterfaceCount
    count_type = 'timestep'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./subdomain] # 1 on initial and  for each timestep
    type = SideSetupInterfaceCount
    count_type = 'subdomain'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./initialize] # 1 for initial and 2 for each timestep
    type = SideSetupInterfaceCount
    count_type = 'initialize'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./finalize] # 1 for initial and 2 for each timestep
    type = SideSetupInterfaceCount
    count_type = 'finalize'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./execute] # 4 for initial and 8 for each timestep
    type = SideSetupInterfaceCount
    count_type = 'execute'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./threadjoin] # 1 for initial and 2 for each timestep
    type = SideSetupInterfaceCount
    count_type = 'threadjoin'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/mean_cap/random.i

# apply many random large deformations, checking that the algorithm returns correctly to
# the yield surface each time.  Two yield surfaces are used: one for compression and one for tension.


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./max_yield_fcn]
    type = ElementExtremeValue
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console'
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'max_yield_fcn'
  [../]
[]

[UserObjects]
  [./strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cap1]
    type = TensorMechanicsPlasticMeanCap
    a = -1
    strength = strength
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
  [./cap2]
    type = TensorMechanicsPlasticMeanCap
    a = 1
    strength = strength
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    max_NR_iterations = 2
    ep_plastic_tolerance = 1E-6
    plastic_models = 'cap1 cap2'
    debug_fspb = crash
    deactivation_scheme = optimized
    min_stepsize = 1
    max_stepsize_for_dumb = 1
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/misc/check_error/coupled_nodal_for_non_nodal_variable.i

# Checking that coupling a constant monomial variable into an object that expects
# a nodal variable will report an error

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
  elem_type = EDGE2
[]

[Variables]
  [./v]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Materials]
  [./m]
    type = CoupledNodalMaterial
    coupled = v
  [../]
[]

[Executioner]
  type = Transient
[]

modules/tensor_mechanics/test/tests/multi/three_surface16.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 3.0E-6m in y direction and 2.1E-6 in z direction.
# trial stress_yy = 3.0 and stress_zz = 2.1
#
# A complicated return will follow, with various contraints being
# deactivated, kuhn-tucker failing, line-searching, etc, but
# the result should be
# stress_yy=1=stress_zz, and internal0=1.1 internal1=2

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '3.0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '2.1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 4
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1'
    debug_jac_at_intnl = '1 1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface16
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/jacobian/thermal_coupling.i

# Thermal eigenstrain coupling
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temperature]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = StressDivergenceTensors
    variable = disp_x
    temperature = temperature
    thermal_eigenstrain_name = thermal_contribution
    component = 0
  [../]
  [./cy_elastic]
    type = StressDivergenceTensors
    variable = disp_y
    temperature = temperature
    thermal_eigenstrain_name = thermal_contribution
    component = 1
  [../]
  [./cz_elastic]
    type = StressDivergenceTensors
    variable = disp_z
    temperature = temperature
    thermal_eigenstrain_name = thermal_contribution
    component = 2
  [../]
  [./temperature]
    type = Diffusion
    variable = temperature
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 10.0
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeSmallStrain
    eigenstrain_names = thermal_contribution
  [../]
  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    temperature = temperature
    thermal_expansion_coeff = 1.0E2
    eigenstrain_name = thermal_contribution
    stress_free_temperature = 0.0
  [../]
  [./admissible]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  solve_type = NEWTON
  end_time = 1
  dt = 1
  type = Transient
[]

test/tests/transfers/multiapp_nearest_node_transfer/tosub_displaced_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_master]
  [../]
  [./elemental_from_master]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./disp_x]
    initial_condition = -.3
  [../]
  [./disp_y]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/fluidstate/theis.i

# Two phase Theis problem: Flow from single source using WaterNCG fluidstate.
# Constant rate injection 2 kg/s
# 1D cylindrical mesh
# Initially, system has only a liquid phase, until enough gas is injected
# to form a gas phase, in which case the system becomes two phase.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 40
  xmax = 200
  bias_x = 1.05
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = Y
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[AuxVariables]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./y0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1]
    type = PorousFlowPropertyAux
    variable = x1
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./y0]
    type = PorousFlowPropertyAux
    variable = y0
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = timestep_end
  [../]
[]

[Variables]
  [./pgas]
    initial_condition = 20e6
  [../]
  [./zi]
    initial_condition = 0
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pgas
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pgas
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = zi
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = zi
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowWaterNCG
    water_fp = water
    gas_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = zi
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
  [../]
[]

[BCs]
  [./rightwater]
    type = DirichletBC
    boundary = right
    value = 20e6
    variable = pgas
  [../]
[]

[DiracKernels]
  [./source]
    type = PorousFlowSquarePulsePointSource
    point = '0 0 0'
    mass_flux = 2
    variable = zi
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-8       1E-10 20'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 2e2
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 10
    growth_factor = 2
  [../]
[]

[VectorPostprocessors]
  [./line]
    type = NodalValueSampler
    sort_by = x
    variable = 'pgas zi'
    execute_on = 'timestep_end'
  [../]
[]

[Postprocessors]
  [./pgas]
    type = PointValue
    point =  '1 0 0'
    variable = pgas
  [../]
  [./sgas]
    type = PointValue
    point =  '1 0 0'
    variable = saturation_gas
  [../]
  [./zi]
    type = PointValue
    point = '1 0 0'
    variable = zi
  [../]
  [./massgas]
    type = PorousFlowFluidMass
    fluid_component = 1
  [../]
  [./x1]
    type = PointValue
    point =  '1 0 0'
    variable = x1
  [../]
  [./y0]
    type = PointValue
    point =  '1 0 0'
    variable = y0
  [../]
[]

[Outputs]
  print_linear_residuals = false
  perf_graph = true
  [./csvout]
    type = CSV
    execute_on = timestep_end
    execute_vector_postprocessors_on = final
  [../]
[]

modules/functional_expansion_tools/examples/3D_volumetric_cylindrical_subapp_mesh_refine/sub.i

# Derived from the example '3D_volumetric_cylindrical' with the following differences:
#
#   1) The model mesh is refined in the MasterApp by 1
#   2) Mesh adaptivity is enabled for the SubApp
#   3) Output from the SubApp is enabled so that the mesh changes can be visualized
[Mesh]
  type = FileMesh
  file = cyl-tet.e
[]

[Adaptivity]
  marker = errorfrac
  steps = 2
  [./Indicators]
    [./error]
      type = GradientJumpIndicator
      variable = s
      outputs = none
    [../]
  [../]
  [./Markers]
    [./errorfrac]
      type = ErrorFractionMarker
      refine = 0.4
      coarsen = 0.1
      indicator = error
      outputs = none
    [../]
  [../]
[]

# Non-copy transfers only work with AuxVariable, but nothing will be solved without a variable
# defined. The solution is to define an empty variable tha does nothing, but causes MOOSE to solve
# the AuxKernels that we need.
[Variables]
  [./empty]
  [../]
[]

[AuxVariables]
  [./s]
    order = FIRST
    family = LAGRANGE
  [../]
  [./m_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

# We must have a kernel for every variable, hence this null kernel to match the variable 'empty'
[Kernels]
  [./null_kernel]
    type = NullKernel
    variable = empty
  [../]
[]

[AuxKernels]
  [./reconstruct_m_in]
    type = FunctionSeriesToAux
    function = FX_Basis_Value_Sub
    variable = m_in
  [../]
  [./calculate_s] # Something to make 's' change each time, but allow a converging solution
    type = ParsedAux
    variable = s
    args = m_in
    function = '2*exp(-m_in/0.8)'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = CylindricalDuo
    orders = '5   3' # Axial first, then (r, t) FX
    physical_bounds = '-2.5 2.5   0 0 1' # z_min z_max   x_center y_center radius
    z = Legendre # Axial in z
    disc = Zernike # (r, t) default to unit disc in x-y plane
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Sub
    variable = s
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  file_base = sub
[]

modules/tensor_mechanics/test/tests/capped_drucker_prager/small_deform2_lode_zero.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1.5E-6*x+2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    mc_interpolation_scheme = lode_zero
    internal_constraint_tolerance = 1 # irrelevant here
    yield_function_tolerance = 1      # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    lambda = 0.0
    shear_modulus = 1.0e7
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = cdp
    perform_finite_strain_rotations = false
  [../]
  [./cdp]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-8
    tip_smoother = 4
    smoothing_tol = 1E-5
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_lode_zero
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/bcs/periodic/all_periodic_trans.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  nz = 0
  xmax = 10
  ymax = 10
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Functions]
  [./tr_x]
    type = ParsedFunction
    value = x
  [../]
  [./tr_y]
    type = ParsedFunction
    value = y+10
  [../]
  [./itr_x]
    type = ParsedFunction
    value = x
  [../]
  [./itr_y]
    type = ParsedFunction
    value = y-10
  [../]

  [./tr_x2]
    type = ParsedFunction
    value = x+10
  [../]
  [./tr_y2]
    type = ParsedFunction
    value = y
  [../]
  [./itr_x2]
    type = ParsedFunction
    value = x-10
  [../]
  [./itr_y2]
    type = ParsedFunction
    value = y
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./forcing]
    type = GaussContForcing
    variable = u
    x_center = 2
    y_center = 1
    x_spread = 0.25
    y_spread = 0.5
  [../]
  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  # active = ' '
  [./Periodic]
    [./x]
      primary = bottom
      secondary = top
      transform_func = 'tr_x tr_y'
      inv_transform_func = 'itr_x itr_y'
    [../]

    [./y]
      primary = left
      secondary = right
      transform_func = 'tr_x2 tr_y2'
      inv_transform_func = 'itr_x2 itr_y2'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  num_steps = 10
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/transfers/multiapp_postprocessor_transfer/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.01
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Postprocessors]
  [./from_master]
    type = Receiver
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/Wave_1_D/Rayleigh_HHT/sm/wave_bc_1d_sm.i

# Wave propogation in 1-D using HHT time integration in the presence
# of Rayleigh damping
#
# The test is for an 1-D bar element of length 4m fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the
# other end.  alpha, beta and gamma are HHT time integration
# parameters eta and zeta are mass dependent and stiffness dependent
# Rayleigh damping coefficients, respectively.  The equation of motion
# in terms of matrices is:
#
# M*accel + (eta*M+zeta*K)*((1+alpha)*vel-alpha*vel_old)+(1+alpha)*K*disp-alpha*K*disp_old = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# The displacement at the first, second, third and fourth node at t = 0.1 are
# -7.787499960311491942e-02, 1.955566679096475483e-02 and -4.634888180231294501e-03, respectively.
[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = false
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    zeta = 0.1
    alpha = -0.3
  [../]
[]
[Kernels]
 [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.422
    gamma = 0.8
    eta=0.1
    alpha = -0.3
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.422
    gamma = 0.8
    eta=0.1
    alpha = -0.3
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.422
    gamma = 0.8
    eta = 0.1
    alpha = -0.3
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.8
    execute_on = timestep_end
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
   type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
    [./bottom_x]
      type = DirichletBC
      variable = disp_x
      boundary = bottom
      value=0.0
    [../]
    [./bottom_z]
      type = DirichletBC
      variable = disp_z
      boundary = bottom
      value=0.0
    [../]
    [./bottom_y]
      type = FunctionDirichletBC
      variable = disp_y
      boundary = bottom
      function = displacement_bc
    [../]
[]

[Materials]
  [./constant]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    youngs_modulus = 1
    poissons_ratio = 0
    thermal_expansion = 0
   [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1'
  [../]

[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 6.0
  dtmax = 0.1
  dtmin = 0.1
  l_tol = 1e-8
  nl_rel_tol = 1e-8
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.001 1 0.001 0.0 0.0'
    scale_factor = 7750
  [../]
  [./displacement_ic]
    type = PiecewiseLinear
    axis = y
    x = '0.0 0.3 0.4 0.5 0.6 0.7 1.0'
    y = '0.0 0.0 0.0001 1.0 0.0001 0.0 0.0'
    scale_factor = 0.1
  [../]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
    [./disp_1]
       type = NodalVariableValue
       nodeid = 1
       variable = disp_y
     [../]
    [./disp_2]
       type = NodalVariableValue
       nodeid = 3
       variable = disp_y
     [../]
    [./disp_3]
       type = NodalVariableValue
       nodeid = 10
       variable = disp_y
     [../]
    [./disp_4]
       type = NodalVariableValue
       nodeid = 14
       variable = disp_y
     [../]
[]

[Outputs]
  exodus = true
  csv = true
  print_linear_residuals = true
  perf_graph = true
[]

modules/porous_flow/examples/tutorial/05_tabulated.i

# Darcy flow with heat advection and conduction, using Water97 properties
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
    input = annular
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
    initial_condition = 1E6
  [../]
  [./temperature]
    initial_condition = 313
    scaling = 1E-8
  [../]
[]

[PorousFlowBasicTHM]
  porepressure = porepressure
  temperature = temperature
  coupling_type = ThermoHydro
  gravity = '0 0 0'
  fp = tabulated_water
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 2E6
    boundary = injection_area
  [../]
  [./constant_injection_temperature]
    type = DirichletBC
    variable = temperature
    value = 333
    boundary = injection_area
  [../]
[]

[Modules]
  [./FluidProperties]
    [./true_water]
      type = Water97FluidProperties
    [../]
    [./tabulated_water]
      type = TabulatedFluidProperties
      fp = true_water
      temperature_min = 275
      interpolated_properties = 'density viscosity enthalpy internal_energy'
      fluid_property_file = water97_tabulated.csv
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.8
    solid_bulk_compliance = 2E-7
    fluid_bulk_modulus = 1E7
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1E-14 0 0   0 1E-14 0   0 0 1E-14'
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityConst
    block = caps
    permeability = '1E-15 0 0   0 1E-15 0   0 0 1E-16'
  [../]

  [./thermal_expansion]
    type = PorousFlowConstantThermalExpansionCoefficient
    biot_coefficient = 0.8
    drained_coefficient = 0.003
    fluid_coefficient = 0.0002
  [../]
  [./rock_internal_energy]
    type = PorousFlowMatrixInternalEnergy
    density = 2500.0
    specific_heat_capacity = 1200.0
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '10 0 0  0 10 0  0 0 10'
    block = 'caps aquifer'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E5
  nl_abs_tol = 1E-10
[]

[Outputs]
  exodus = true
[]

modules/combined/examples/xfem/xfem_thermomechanics_stress_growth.i

# This is a demonstration of a simple thermomechanics simulation using
# XFEM in which a single crack propagates based on a principal stress
# criterion.
#
# The top and bottom of the plate are fixed in the y direction, and the
# top of the plate is cooled down over time. The thermal contraction
# causes tensile stresses, which lead to crack propagation. The crack
# propagates in a curved path because of the changinging nature of
# the thermal gradient as a result of the crack. There is no heat
# conduction across the crack as soon as it forms.

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 11
  ny = 11
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[Variables]
  # Solve for the temperature and the displacements
  # Displacements are not specified because the TensorMechanics/Master Action sets them up
  [./temp]
    initial_condition = 300
  [../]
[]

[XFEM]
  geometric_cut_userobjects = 'line_seg_cut_uo'
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '1.0  0.5  0.8  0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./xfem_marker_uo]
    type = XFEMRankTwoTensorMarkerUserObject
    execute_on = timestep_end
    tensor = stress
    scalar_type = MaxPrincipal
    threshold = 5e+1
    average = true
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    planar_formulation = plane_strain
    add_variables = true
    eigenstrain_names = eigenstrain
  [../]
[]

[Kernels]
  [./htcond]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./topx]
    type = DirichletBC
    boundary = top
    variable = disp_x
    value = 0.0
  [../]
  [./topy]
    type = DirichletBC
    boundary = top
    variable = disp_y
    value = 0.0
  [../]
  [./topt]
    type = FunctionDirichletBC
    boundary = top
    variable = temp
    function = 273-t*27.3
  [../]
  [./bott]
    type = FunctionDirichletBC
    boundary = bottom
    variable = temp
    function = 273
#    value = 273.0
  [../]
[]

[Materials]
  [./thcond]
    type = GenericConstantMaterial
    prop_names = 'thermal_conductivity'
    prop_values = '5e-6'
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./_elastic_strain]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./thermal_strain]
    type= ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 10e-6
    temperature = temp
    stress_free_temperature = 273
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-9

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 10.0

  max_xfem_update = 5
[]

[Outputs]
  exodus = true
  execute_on = timestep_end
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/multiapps/initial_intactive/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    positions = '0 0 0'
    type = TransientMultiApp
    input_files = 'sub.i'
    app_type = MooseTestApp
    enable = false # Start with a multiapp that's disabled up front
    sub_cycling = true
  [../]
[]

[Controls]
  [./multiapp_enable]
    type = TimePeriod
    disable_objects = 'MultiApps::sub'
    start_time = 0
    end_time = 1.3
    execute_on = 'timestep_begin'
    reverse_on_false = true
  [../]
[]

test/tests/nodalkernels/jac_test/block_jacobian_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
[]

[Variables]
  [./u_x]
  [../]
  [./u_y]
  [../]
[]

[Kernels]
  [./diff_x]
    type = CoefDiffusion
    variable = u_x
    coef = 0.1
  [../]
  [./diff_y]
    type = CoefDiffusion
    variable = u_y
    coef = 0.1
  [../]
[]

[NodalKernels]
  [./test_y]
    type = JacobianCheck
    variable = u_y
  [../]
  [./test_x]
    type = JacobianCheck
    variable = u_x
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = u_x
    preset = false
    boundary = left
    value = 0
  [../]
  [./right_x]
    type = DirichletBC
    variable = u_x
    preset = false
    boundary = right
    value = 1
  [../]
  [./left_y]
    type = DirichletBC
    variable = u_y
    preset = false
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
  solve_type = NEWTON
#  petsc_options = '-snes_check_jacobian -snes_check_jacobian_view'
  nl_max_its = 1
  nl_abs_tol = 1e0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/interaction_integral/interaction_integral_2d.i

#This tests the Interaction Integral evaluation capability.
#This is a 2d nonlinear plane strain model

[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack2d.e
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]


[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = interaction_integral_2d_out
  exodus = true
  csv = true
[]

test/tests/restart/restart_add_variable/add_variable_restart.i

# Use the exodus file for restarting the problem:
# - restart one variable
# - and have one extra variable
# - have PBP active to have more system in Equation system
#

[Mesh]
  file = transient_with_stateful_out.e
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = -4+(x*x+y*y)
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./diffusivity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./out_diffusivity]
    type = MaterialRealAux
    variable = diffusivity
    property = diffusivity
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = MatDiffusionTest
    variable = u
    prop_name = diffusivity
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[Materials]
  [./mat]
    type = StatefulMaterial
    block = 0
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left_v]
    type = DirichletBC
    variable = v
    boundary = '3'
    value = 0
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '1'
    value = 1
  [../]
[]

[Preconditioning]
  [./PBP]
    type = PBP
    solve_order = 'u v'
    preconditioner = 'AMG AMG'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = JFNK
  dt = 0.1
  reset_dt = true #NECESSARY to force a change in DT when using restart!
  num_steps = 3
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
    execute_elemental_on = none
  [../]
[]

[Problem]
  restart_file_base = transient_with_stateful_out_cp/LATEST
[]

test/tests/restart/restart_steady_from_transient/transient.i

# We run a simple problem (5 time steps and save off the solution)
# In part2, we load the solution and solve a steady problem. The test check, that the initial state in part 2 is the same as the last state from part1

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 20
  ny = 20
  parallel_type = replicated
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = -4+(x*x+y*y)
  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'ie diff ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.2
  start_time = 0
  num_steps = 5
[]

[Outputs]
  exodus = true
  checkpoint = true
[]

modules/solid_mechanics/test/tests/interaction_integral/interaction_integral_2d_rot.i

#This tests the J-Integral evaluation capability.
#This is a 2d plane strain model
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = crack2d_rot.e
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '0 1 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_x
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_y
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = interaction_integral_2d_rot_out
  exodus = true
  csv = true
[]

test/tests/multiapps/sub_cycling_failure/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Problem]
  type = FailingProblem
  fail_step = 15
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/functions/solution_function/solution_function_rot2.i

# checking rotation of points by 45 deg about y axis in a SolutionUserObject
[Mesh]
  # this is chosen so when i rotate through 45deg i get a length of "1" along the x or y or z direction
  type = GeneratedMesh
  dim = 3
  xmin = -0.70710678
  xmax = 0.70710678
  nx = 3
  ymin = -0.70710678
  ymax = 0.70710678
  ny = 3
  zmin = -0.70710678
  zmax = 0.70710678
  nz = 3
[]

[UserObjects]
  [./solution_uo]
    type = SolutionUserObject
    mesh = cube_with_u_equals_x.e
    timestep = 1
    system_variables = u
    rotation0_vector = '0 1 0'
    rotation0_angle = 45
    transformation_order = rotation0
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = solution_fcn
  [../]
[]

[Functions]
  [./solution_fcn]
    type = SolutionFunction
    from_variable = u
    solution = solution_uo
  [../]
[]

[Kernels]
  [./diff]
    type = TimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 1
  end_time = 1
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = solution_function_rot2
  exodus = true
[]

modules/porous_flow/test/tests/sinks/injection_production_eg.i

# phase = 0 is liquid phase
# phase = 1 is gas phase
# fluid_component = 0 is water
# fluid_component = 1 is CO2

# Constant rate of CO2 injection into the left boundary
# 1D mesh
# The PorousFlowPiecewiseLinearSinks remove the correct water and CO2 from the right boundary

# Note i take pretty big timesteps here so the system is quite nonlinear

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmax = 20
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[AuxVariables]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./frac_water_in_liquid]
    initial_condition = 1.0
  [../]
  [./frac_water_in_gas]
    initial_condition = 0.0
  [../]
[]

[AuxKernels]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
[]

[Variables]
  [./pwater]
    initial_condition = 20E6
  [../]
  [./pgas]
    initial_condition = 20.1E6
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pwater
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = pgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = pgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas pwater'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1E-6
    m = 0.6
  [../]
[]

[Modules]
  [./FluidProperties]
    [./true_water]
      type = Water97FluidProperties
    [../]
    [./tabulated_water]
      type = TabulatedFluidProperties
      fp = true_water
      temperature_min = 275
      pressure_max = 1E8
      interpolated_properties = 'density viscosity enthalpy internal_energy'
      fluid_property_file = water97_tabulated_11.csv
    [../]
    [./true_co2]
      type = CO2FluidProperties
    [../]
    [./tabulated_co2]
      type = TabulatedFluidProperties
      fp = true_co2
      temperature_min = 275
      pressure_max = 1E8
      interpolated_properties = 'density viscosity enthalpy internal_energy'
      fluid_property_file = co2_tabulated_11.csv
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 293.15
  [../]
  [./saturation_calculator]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = pgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'frac_water_in_liquid frac_water_in_gas'
  [../]
  [./water]
    type = PorousFlowSingleComponentFluid
    fp = tabulated_water
    phase = 0
  [../]
  [./co2]
    type = PorousFlowSingleComponentFluid
    fp = tabulated_co2
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityBC
    nw_phase = true
    lambda = 2
    s_res = 0.1
    sum_s_res = 0.2
    phase = 1
  [../]
[]

[BCs]
  [./co2_injection]
    type = PorousFlowSink
    boundary = left
    variable = pgas # pgas is associated with the CO2 mass balance (fluid_component = 1 in its Kernels)
    flux_function = -1E-2 # negative means a source, rather than a sink
  [../]

  [./right_water]
    type = PorousFlowPiecewiseLinearSink
    boundary = right

    # a sink of water, since the Kernels given to pwater are for fluid_component = 0 (the water)
    variable = pwater

    # this Sink is a function of liquid porepressure
    # Also, all the mass_fraction, mobility and relperm are referenced to the liquid phase now
    fluid_phase = 0

    # Sink strength = (Pwater - 20E6)
    pt_vals = '0 1E9'
    multipliers = '0 1E9'
    PT_shift = 20E6

    # multiply Sink strength computed above by mass fraction of water at the boundary
    mass_fraction_component = 0

    # also multiply Sink strength by mobility of the liquid
    use_mobility = true

    # also multiply Sink strength by the relperm of the liquid
    use_relperm = true

    # also multiplly Sink strength by 1/L, where L is the distance to the fixed-porepressure external environment
    flux_function = 10 # 1/L
  [../]

  [./right_co2]
    type = PorousFlowPiecewiseLinearSink
    boundary = right
    variable = pgas
    fluid_phase = 1
    pt_vals = '0 1E9'
    multipliers = '0 1E9'
    PT_shift = 20.1E6
    mass_fraction_component = 1
    use_mobility = true
    use_relperm = true
    flux_function = 10 # 1/L
  [../]
[]

[Preconditioning]
  active = 'basic'
  [./basic]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu NONZERO 2'
  [../]
  [./preferred]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = 'lu mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  nl_abs_tol = 1E-13
  nl_rel_tol = 1E-10
  end_time = 1e4
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1E4
    growth_factor = 1.1
  [../]
[]

[VectorPostprocessors]
  [./pps]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '20 0 0'
    num_points = 20
    sort_by = x
    variable = 'pgas pwater saturation_gas'
  [../]
[]

[Outputs]
  print_linear_residuals = false
  perf_graph = true
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/combined/test/tests/solid_mechanics/LinearStrainHardening/sm/LinearStrainHardeningRestart1_sm.i

#

[GlobalParams]
  volumetric_locking_correction = false
[]

[Mesh]
  file = LinearStrainHardening_test.e

  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_mag]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t/5.0
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]

  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]

  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]

  [./plastic_strain_mag]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = plastic_strain_mag
  [../]

 []


[BCs]

  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

[]

[Materials]
  [./constant]
    type = LinearStrainHardening
    block = 1
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
    yield_stress = 2.4e2
    hardening_constant = 1206
    relative_tolerance = 1e-25
    absolute_tolerance = 1e-5
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
  start_time = 0.0
  end_time = 0.0105
  num_steps = 4
  dt = 1.5e-3
[]



[Outputs]
  exodus = true
  csv = true
  [./out]
    type = Checkpoint
    num_files = 1
  [../]
[]

modules/peridynamics/test/tests/jacobian_check/generalized_planestrain_OSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  scalar_out_of_plane_strain = scalar_strain_zz
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/Peridynamics/Mechanics]
  [./Master]
    [./all]
      formulation = ORDINARY_STATE
    [../]
  [../]
  [./GeneralizedPlaneStrain]
    [./all]
      formulation = ORDINARY_STATE
      out_of_plane_stress_variable = stress_zz
    [../]
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = NodalRankTwoPD
    variable = stress_zz

    poissons_ratio = 0.3
    youngs_modulus = 1e6

    rank_two_tensor = stress
    output_type = component
    index_i = 2
    index_j = 2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialOSPD
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_4/plane4_template1.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane4_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

test/tests/misc/jacobian/no_negative_jacobian.i

# The mesh is inverted using a prescribed displacement.
# However, due to use_displaced_mesh = false in the Kernel,
# libMesh does not throw a "negative jacobian" error
[Mesh]
  type = GeneratedMesh
  dim = 3
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxKernels]
  [./disp_x]
    variable = disp_x
    type = FunctionAux
    function = '-x*t'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
    use_displaced_mesh = false
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  end_time = 1.5
[]

modules/level_set/test/tests/reinitialization/reinit.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 8
  ny = 8
  uniform_refine = 3
[]

[Variables]
  [./phi]
  [../]
[]

[AuxVariables]
  [./phi_0]
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = phi
      auto_direction = 'x y'
    [../]
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = phi
  [../]

  [./reinit]
    type = LevelSetOlssonReinitialization
    variable = phi
    phi_0 = phi_0
    epsilon = 0.05
  [../]
[]

[Problem]
  type = LevelSetReinitializationProblem
[]

[UserObjects]
  [./arnold]
    type = LevelSetOlssonTerminator
    tol = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  start_time = 0
  num_steps = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  scheme = crank-nicolson
  petsc_options_iname = '-pc_type -pc_sub_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg    300'
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.001
    optimal_iterations = 5
    growth_factor = 5
  [../]
[]

[Outputs]
[]

modules/phase_field/test/tests/mobility_derivative/mobility_derivative_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  xmax = 30.0
  ymax = 30.0
  elem_type = QUAD4
[]

[Variables]
  [./c]
  [../]
  [./w]
  [../]
[]

[ICs]
  [./c_IC]
    type = CrossIC
    x1 = 0.0
    x2 = 30.0
    y1 = 0.0
    y2 = 30.0
    variable = c
  [../]
[]

[Kernels]
  [./cres]
    type = SplitCHParsed
    variable = c
    kappa_name = kappa_c
    w = w
    f_name = F
  [../]
  [./wres]
    type = SplitCHWRes
    variable = w
    mob_name = M
    args = c
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./kappa]
    type = GenericConstantMaterial
    prop_names = 'kappa_c'
    prop_values = '2.0'
  [../]
  [./mob]
    type = DerivativeParsedMaterial
    f_name = M
    args = c
    function = '1-0.9*c^2'
    outputs = exodus
    derivative_order = 1
  [../]
  [./free_energy]
    type = MathEBFreeEnergy
    f_name = F
    c = c
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   off_diag_row = 'w c'
   off_diag_column = 'c w'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31      lu      1'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 50
  nl_rel_tol = 1.0e-10

  dt = 10.0
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/initial_conditions/CrossIC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c_IC]
    type = CrossIC
    x1 = 0.0
    x2 = 50.0
    y1 = 0.0
    y2 = 50.0
    variable = c
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 2.0'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 15
  l_tol = 1.0e-4
  nl_max_its = 10
  nl_rel_tol = 1.0e-8

  start_time = 0.0
  num_steps = 2
  dt = 20.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/critical_time_step/timoshenko_smallstrain_critstep.i

# Test for small strain timoshenko beam bending in y direction

# A unit load is applied at the end of a cantilever beam of length 4m.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 2.60072400269
# Shear modulus (G) = 1.00027846257
# Poisson's ratio (nu) = 0.3
# Shear coefficient (k) = 0.85
# Cross-section area (A) = 0.554256
# Iy = 0.0141889 = Iz
# Length = 4 m

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 204.3734

# The small deformation analytical deflection of the beam is given by
# delta = PL^3/3EI * (1 + 3.0 / alpha) = 5.868e-4 m

# Using 10 elements to discretize the beam element, the FEM solution is 5.852e-2m.
# This deflection matches the FEM solution given in Prathap and Bhashyam (1982).

# References:
# Prathap and Bhashyam (1982), International journal for numerical methods in engineering, vol. 18, 195-210.
# Note that the force is scaled by 1e-4 compared to the reference problem.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = ConstantRate
    variable = disp_y
    boundary = right
    rate = 1.0e-4
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 1
  dtmin = 1
  end_time = 1
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 2.60072400269
    poissons_ratio = 0.3
    shear_coefficient = 0.85
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.554256
    Ay = 0.0
    Az = 0.0
    Iy = 0.0141889
    Iz = 0.0141889
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
  [./density]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '8050.0'
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./time_step]
    type = CriticalTimeStep
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/combined/test/tests/elastic_patch/ad_elastic_patch_plane_strain.i

#
# This problem is taken from the Abaqus verification manual:
#   "1.5.1 Membrane patch test"
# The stress solution is given as:
#   xx = yy = 1600
#   zz = 800
#   xy = 400
#   yz = zx = 0
#
# Since the strain is 1e-3 in both directions, the new density should be
#   new_density = original_density * V_0 / V
#   new_density = 0.283 / (1 + 1e-3 + 1e-3) = 0.282435

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
[]

[Mesh]
  file = elastic_patch_rz.e
[]

[Variables]
  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules/TensorMechanics/Master/All]
  strain = SMALL
  incremental = true
  planar_formulation = PLANE_STRAIN
  add_variables = true
  generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
[]

[Kernels]
  [./heat]
    type = TimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = '1e-3*(x+0.5*y)'
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = '1e-3*(y+0.5*x)'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]
[]

[Materials]
  [./density]
    type = ADDensity
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/functional_expansion_tools/test/tests/errors/multiapp_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./empty]
  [../]
[]

[AuxVariables]
  [./s]
    order = FIRST
    family = LAGRANGE
  [../]
  [./m_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./null_kernel]
    type = NullKernel
    variable = empty
  [../]
[]

[AuxKernels]
  [./reconstruct_m_in]
    type = FunctionSeriesToAux
    function = FX_Basis_Value_Sub
    variable = m_in
  [../]
  [./calculate_s]
    type = ParsedAux
    variable = s
    args = m_in
    function = '2*exp(-m_in/0.8)'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Sub
    variable = s
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

modules/tensor_mechanics/test/tests/strain_energy_density/incr_model_elas_plas.i

# Single element test to check the strain energy density calculation

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 2
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -100
  [../]
  [./ramp_disp_y]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 6.8e-6 1.36e-5'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = SMALL
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress elastic_strain_xx elastic_strain_yy elastic_strain_zz plastic_strain_xx plastic_strain_yy plastic_strain_zz strain_xx strain_yy strain_zz'
    planar_formulation = PLANE_STRAIN
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 'left'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 'bottom'
    value = 0.0
  [../]
  [./top_disp]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 'top'
    function = ramp_disp_y
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 30e+6
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'isoplas'
  [../]
  [./isoplas]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 1e2
    hardening_constant = 0.0
  [../]
  [./strain_energy_density]
    type = StrainEnergyDensity
    incremental = true
  [../]
[]

[Executioner]
   type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 3e-7
   nl_rel_tol = 1e-12
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 2
   num_steps = 2
[]

[Postprocessors]
  [./epxx]
    type = ElementalVariableValue
    variable = elastic_strain_xx
    elementid = 0
  [../]
  [./epyy]
    type = ElementalVariableValue
    variable = elastic_strain_yy
    elementid = 0
  [../]
  [./epzz]
    type = ElementalVariableValue
    variable = elastic_strain_zz
    elementid = 0
  [../]
  [./eplxx]
    type = ElementalVariableValue
    variable = plastic_strain_xx
    elementid = 0
  [../]
  [./eplyy]
    type = ElementalVariableValue
    variable = plastic_strain_yy
    elementid = 0
  [../]
  [./eplzz]
    type = ElementalVariableValue
    variable = plastic_strain_zz
    elementid = 0
  [../]
  [./etxx]
    type = ElementalVariableValue
    variable = strain_xx
    elementid = 0
  [../]
  [./etyy]
    type = ElementalVariableValue
    variable = strain_yy
    elementid = 0
  [../]
  [./etzz]
    type = ElementalVariableValue
    variable = strain_zz
    elementid = 0
  [../]
  [./sigxx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./sigyy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigzz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./SED]
    type = ElementAverageValue
    variable = SED
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/porous_flow/test/tests/chemistry/except20.i

# Exception test
# No reference chemistry
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./dummy]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./a]
    initial_condition = 0.5
  [../]
  [./ini_mineral_conc]
    initial_condition = 0.2
  [../]
  [./mineral]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./porosity]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./mineral]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = mineral
  [../]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./dummy]
    type = Diffusion
    variable = dummy
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = dummy
    number_fluid_phases = 1
    number_fluid_components = 2
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
    temperature = 1
  [../]
  [./predis_qp]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = a
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = 2
    reactions = 1
    specific_reactive_surface_area = 0.5
    kinetic_rate_constant = 0.6065306597126334
    activation_energy = 3
    molar_volume = 2
    gas_constant = 6
    reference_temperature = 0.5
  [../]
  [./mineral_conc_qp]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_mineral_conc
  [../]
  [./porosity]
    type = PorousFlowPorosity
    chemical = true
    porosity_zero = 0.6
    initial_mineral_concentrations = ini_mineral_conc
  [../]
[]


[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1E-10
  dt = 0.1
  end_time = 0.4
[]

[Postprocessors]
  [./porosity]
    type = PointValue
    point = '0 0 0'
    variable = porosity
  [../]
  [./c]
    type = PointValue
    point = '0 0 0'
    variable = mineral
  [../]
[]
[Outputs]
  csv = true
  perf_graph = true
[]

test/tests/auxkernels/solution_scalar_aux/solution_scalar_aux.i

[Mesh]
  # This test uses SolutionUserObject which doesn't work with DistributedMesh.
  type = GeneratedMesh
  dim = 1
  nx = 1
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./a]
    family = SCALAR
    order = FIRST
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxScalarKernels]
  [./a_sk]
    type = SolutionScalarAux
    variable = a
    solution = solution_uo
    from_variable = a
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./solution_uo]
    type = SolutionUserObject
    mesh = build_out.e
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 2
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  nl_rel_tol = 1e-10
  dt = 1
  num_steps = 3
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/elastic_thermal_patch/elastic_thermal_jacobian_rz_smp_sm.i

# This problem is intended to exercise the Jacobian for coupled RZ
# problems.  Only two iterations should be needed.

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_thermal_patch_rz_test.e
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '0'
  [../]
  [./uz]
    type = ParsedFunction
    value = '0'
  [../]
  [./body]
    type = ParsedFunction
    value = '-400/x'
  [../]
  [./temp]
    type = ParsedFunction
    value = '117.56+100*t'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    temp = temp
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
    execute_on = timestep_end
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
    execute_on = timestep_end
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = ur
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = uz
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = 10
    function = temp
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.25

    temp = temp
    thermal_expansion = 1e-6
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = 1

    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    density = 0.283
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-12

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[]

[Outputs]
  file_base = elastic_thermal_jacobian_rz_smp_out
  [./exodus]
    type = Exodus
    execute_on = 'initial timestep_end nonlinear'
    nonlinear_residual_dt_divisor = 100
  [../]
[]

modules/richards/test/tests/gravity_head_2/gh07.i

# unsaturated = true
# gravity = false
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-3
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-3
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = RandomIC
    min = 0.2
    max = 0.8
    variable = pwater
  [../]
  [./gas_ic]
    type = RandomIC
    min = 1.2
    max = 1.8
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((p0-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((p0-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-13 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh07
  csv = true
[]

modules/porous_flow/test/tests/jacobian/brineco2_twophase_nonisothermal.i

# Tests correct calculation of properties derivatives in PorousFlowFluidState
# for nonisothermal two phase conditions, including salt as a nonlinear variable

[Mesh]
  [./mesh]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    ny = 2
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pgas]
  [../]
  [./zi]
  [../]
  [./xnacl]
  [../]
  [./temperature]
  [../]
[]

[ICs]
  [./pgas]
    type = RandomIC
    min = 1e6
    max = 4e6
    variable = pgas
    seed = 1
  [../]
  [./z]
    type = RandomIC
    min = 0.2
    max = 0.8
    variable = zi
    seed = 1
  [../]
  [./xnacl]
    type = RandomIC
    min = 0.01
    max = 0.15
    variable = xnacl
    seed = 1
  [../]
  [./temperature]
    type = RandomIC
    min = 20
    max = 80
    variable = temperature
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = zi
    fluid_component = 1
  [../]
  [./mass2]
    type = PorousFlowMassTimeDerivative
    variable = xnacl
    fluid_component = 2
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    variable = pgas
    fluid_component = 0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    variable = zi
    fluid_component = 1
  [../]
  [./adv2]
    type = PorousFlowAdvectiveFlux
    variable = xnacl
    fluid_component = 2
  [../]
  [./energy]
    type = PorousFlowEnergyTimeDerivative
    variable = temperature
  [../]
  [./heat]
    type = PorousFlowHeatAdvection
    variable = temperature
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi xnacl temperature'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
    pc_max = 1e3
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = zi
    temperature = temperature
    temperature_unit = Celsius
    xnacl = xnacl
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1000
    density = 2500
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
  automatic_scaling = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

modules/tensor_mechanics/test/tests/dynamics/time_integration/newmark_test.i

# Test for  Newmark time integration

# The test is for an 1D bar element of  unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# beta and gamma are Newmark time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel + K*disp = P*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + Div Stress = P
#
# The first term on the left is evaluated using the Inertial force kernel
# The last term on the left is evaluated using StressDivergenceTensors
# The residual due to Pressure is evaluated using Pressure boundary condition

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 0
    index_j = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = bottom
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
      factor = 1
    [../]
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '210e9 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 2
  dt = 0.1
[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp]
    type = NodalMaxValue
    variable = disp_y
    boundary = bottom
  [../]
  [./vel]
    type = NodalMaxValue
    variable = vel_y
    boundary = bottom
  [../]
  [./accel]
    type = NodalMaxValue
    variable = accel_y
    boundary = bottom
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]

[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/richards/test/tests/gravity_head_2/gh08.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-3
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-3
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh08
  csv = true
[]

modules/tensor_mechanics/test/tests/drucker_prager/small_deform3_lode_zero.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-1.7E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    smoother = 8
    mc_interpolation_scheme = lode_zero
    yield_function_tolerance = 1E-7
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-13
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3_lode_zero
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/mean_cap_TC/small_deform5.i

# apply nonuniform stretch in x, y and z directions using
# Lame lambda = 0.7E7, Lame mu = 1.0E7,
# trial_stress(0, 0) = 2.9
# trial_stress(1, 1) = 10.9
# trial_stress(2, 2) = 14.9
# With tensile_strength = 2, decaying to zero at internal parameter = 4E-7
# via a Cubic, the algorithm should return to:
# internal parameter = 2.26829E-7
# trace(stress) = 0.799989 = tensile_strength
# stress(0, 0) = -6.4
# stress(1, 1) = 1.6
# stress(2, 2) = 5.6

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1E-7*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '3E-7*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '5E-7*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
[]

[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 2
    value_residual = 0
    internal_limit = 4E-7
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = -1
    value_residual = 0
    internal_limit = 1E-8
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
    use_custom_returnMap = false
    use_custom_cto = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mean_cap]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-11
    plastic_models = cap
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform5
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/tensor_mechanics/test/tests/cp_user_object/save_euler.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
  nx = 2
  ny = 2
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[GlobalParams]
  volumetric_locking_correction = true
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./gss]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./euler1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./euler2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./euler3]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[UserObjects]
  [./prop_read]
    type = ElementPropertyReadFile
    prop_file_name = 'euler_ang_file.txt'
    # Enter file data as prop#1, prop#2, .., prop#nprop
    nprop = 3
    read_type = element
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./e_yy]
    type = RankTwoAux
    variable = e_yy
    rank_two_tensor = lage
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./fp_yy]
    type = RankTwoAux
    variable = fp_yy
    rank_two_tensor = fp
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./gss]
    type = MaterialStdVectorAux
    variable = gss
    property = state_var_gss
    index = 0
    execute_on = timestep_end
  [../]
  [./euler1]
    type = MaterialRealVectorValueAux
    variable = euler1
    property = Euler_angles
    component = 0
    execute_on = timestep_end
  [../]
  [./euler2]
    type = MaterialRealVectorValueAux
    variable = euler2
    property = Euler_angles
    component = 1
    execute_on = timestep_end
  [../]
  [./euler3]
    type = MaterialRealVectorValueAux
    variable = euler3
    property = Euler_angles
    component = 2
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = tdisp
  [../]
[]

[UserObjects]
  [./slip_rate_gss]
    type = CrystalPlasticitySlipRateGSS
    variable_size = 12
    slip_sys_file_name = input_slip_sys.txt
    num_slip_sys_flowrate_props = 2
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    uo_state_var_name = state_var_gss
  [../]
  [./slip_resistance_gss]
    type = CrystalPlasticitySlipResistanceGSS
    variable_size = 12
    uo_state_var_name = state_var_gss
  [../]
  [./state_var_gss]
    type = CrystalPlasticityStateVariable
    variable_size = 12
    groups = '0 4 8 12'
    group_values = '60.8 60.8 60.8'
    uo_state_var_evol_rate_comp_name = state_var_evol_rate_comp_gss
    scale_factor = 1.0
  [../]
  [./state_var_evol_rate_comp_gss]
    type = CrystalPlasticityStateVarRateComponentGSS
    variable_size = 12
    hprops = '1.0 541.5 109.8 2.5'
    uo_slip_rate_name = slip_rate_gss
    uo_state_var_name = state_var_gss
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainUObasedCP
    stol = 1e-2
    tan_mod_type = exact
    uo_slip_rates = 'slip_rate_gss'
    uo_slip_resistances = 'slip_resistance_gss'
    uo_state_vars = 'state_var_gss'
    uo_state_var_evol_rate_comps = 'state_var_evol_rate_comp_gss'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'disp_x disp_y'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
    read_prop_user_object = prop_read
  [../]
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./e_yy]
    type = ElementAverageValue
    variable = e_yy
  [../]
  [./fp_yy]
    type = ElementAverageValue
    variable = fp_yy
  [../]
  [./gss]
    type = ElementAverageValue
    variable = gss
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.01
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.01
  num_steps = 10
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
    use_displaced_mesh = true
  [../]
[]

modules/combined/test/tests/mortar_tm/2drz/frictionless_first/finite_rr.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_rr'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
    extra_vector_tags = 'ref'
  [../]
  [./plank]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
    extra_vector_tags = 'ref'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
  nl_abs_tol = 1e-12
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test8.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 5
    ny = 5
    xmin = 0
    xmax = 5
    ymin = 0
    ymax = 5
  []

  [./SubdomainBoundingBox1]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '4 4 1'
  [../]
  [./interior_nodeset]
    type = GenerateBoundingBoxNodeSet
    input = SubdomainBoundingBox1
    new_boundary = interior_ns
    bottom_left = '2 2 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeletionGenerator
    block_id = 1
    input = interior_nodeset
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/heat_conduction/test/tests/joule_heating/transient_jouleheating.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 5
  ymax = 5
[]

[Variables]
  [./T]
    initial_condition = 20.0
  [../]
  [./elec]
  [../]
[]

[Kernels]
  [./HeatDiff]
    type = HeatConduction
    variable = T
  [../]
  [./HeatTdot]
    type = HeatConductionTimeDerivative
    variable = T
  [../]
  [./HeatSrc]
    type = JouleHeatingSource
    variable = T
    elec = elec
  [../]
  [./electric]
    type = HeatConduction
    variable = elec
    diffusion_coefficient = electrical_conductivity
  [../]
[]

[BCs]
  [./lefttemp]
    type = DirichletBC
    boundary = left
    variable = T
    value = 20
  [../]
  [./elec_left]
    type = DirichletBC
    variable = elec
    boundary = left
    value = 1
  [../]
  [./elec_right]
    type = DirichletBC
    variable = elec
    boundary = right
    value = 0
  [../]
[]

[Materials]
  [./k]
    type = GenericConstantMaterial
    prop_names = 'thermal_conductivity'
    prop_values = '0.95' #copper in cal/(cm sec C)
    block = 0
  [../]
  [./cp]
    type = GenericConstantMaterial
    prop_names = 'specific_heat'
    prop_values = '0.092' #copper in cal/(g C)
    block = 0
  [../]
  [./rho]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '8.92' #copper in g/(cm^3)
    block = 0
  [../]
  [./sigma]
    type = ElectricalConductivity
    temp = T
    ref_temp = 20
    ref_resistivity = 0.0168
    temp_coeff = 0.00386
    length_scale = 1e-02
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         101   preonly   ilu      1'
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  l_tol = 1e-4
  dt = 1
  end_time = 5
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform2_small_strain.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4
    mc_edge_smoother = 20
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_small_strain
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/phase_field/test/tests/grain_tracker_test/split_grain.i

[Mesh]
  type = EBSDMesh
  filename = EBSD_split_grain.txt
[]

[GlobalParams]
  op_num = 4
  var_name_base = gr
[]

[UserObjects]
  [./ebsd_reader]
    type = EBSDReader
  [../]
  [./ebsd]
    type = PolycrystalEBSD
    coloring_algorithm = bt
    ebsd_reader = ebsd_reader
    enable_var_coloring = true
    output_adjacency_matrix = true
  [../]
  [./grain_tracker]
    type = GrainTracker
    flood_entity_type = ELEMENTAL
    compute_halo_maps = true # For displaying HALO fields
    polycrystal_ic_uo = ebsd
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = ebsd
    [../]
  [../]
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ghost_elements]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halos]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ebsd_grains]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./ghost_elements]
    type = FeatureFloodCountAux
    variable = ghost_elements
    field_display = GHOSTED_ENTITIES
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
  [../]
  [./halos]
    type = FeatureFloodCountAux
    variable = halos
    field_display = HALOS
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
  [./grain_aux]
    type = EBSDReaderPointDataAux
    variable = ebsd_grains
    ebsd_reader = ebsd_reader
    data_name = 'feature_id'
    execute_on = 'initial timestep_end'
  [../]
[]

[Modules]
  [./PhaseField]
    [./EulerAngles2RGB]
      crystal_structure = cubic
      euler_angle_provider = ebsd_reader
      grain_tracker = grain_tracker
    [../]
  [../]
[]

[Materials]
  [./Copper]
    # T = 500 # K
    type = GBEvolution
    T = 500
    wGB = 0.6               # um
    GBmob0 = 2.5e-6         # m^4/(Js) from Schoenfelder 1997
    Q = 0.23                # Migration energy in eV
    GBenergy = 0.708        # GB energy in J/m^2
    molar_volume = 7.11e-6  # Molar volume in m^3/mol
    length_scale = 1.0e-6
    time_scale = 1.0e-6
  [../]
[]

[Postprocessors]
  [./n_elements]
    type = NumElems
    execute_on = 'initial timestep_end'
  [../]
  [./n_nodes]
    type = NumNodes
    execute_on = 'initial timestep_end'
  [../]
  [./DOFs]
    type = NumDOFs
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -pc_hypre_type -pc_hypre_boomeramg_strong_threshold'
  petsc_options_value = 'hypre    boomeramg      0.7'

  l_tol = 1.0e-4
  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1.0e-8

  start_time = 0.0
  num_steps = 2

  [./TimeStepper]
    type = IterationAdaptiveDT
    cutback_factor = 0.9
    dt = 10.0
    growth_factor = 1.1
    optimal_iterations = 7
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
[]

test/tests/transfers/get_transfers_from_feproblem/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./nearest_node]
  [../]
  [./mesh_function]
  [../]
[]

[Kernels]
  [./cd]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.01
  num_steps = 1
  nl_rel_tol = 1e-10
[]

modules/combined/test/tests/poro_mechanics/unconsolidated_undrained.i

# An unconsolidated-undrained test is performed.
# A sample's boundaries are impermeable.  The sample is
# squeezed by a uniform mechanical pressure, and the
# rise in porepressure is observed.
#
# Expect:
# volumetricstrain = -MechanicalPressure/UndrainedBulk
# porepressure = SkemptonCoefficient*MechanicalPressure
# stress_zz = -MechanicalPresure + BiotCoefficient*porepressure
#
# Parameters:
# Biot coefficient = 0.3
# Porosity = 0.1
# Bulk modulus = 2
# Shear modulus = 1.5
# fluid bulk modulus = 1/0.3 = 3.333333
# 1/Biot modulus = (1 - 0.3)*(0.3 - 0.1)/2 + 0.1*0.3 = 0.1. BiotModulus = 10
# Undrained Bulk modulus = 2 + 0.3^2*10 = 2.9
# Skempton coefficient = 0.3*10/2.9 = 1.034483
#
# The mechanical pressure is applied using Neumann BCs,
# since the Neumann BCs are setting stressTOTAL.
#
# MechanicalPressure = 0.1*t  (ie, totalstress_zz = total_stress_xx = totalstress_yy = -0.1*t)
#
# Expect:
# disp_z = volumetricstrain/3 = -MechanicalPressure/3/2.9 = -0.1149*0.1*t
# prorepressure = 1.034483*0.1*t
# stress_zz = -0.1*t + 0.3*1.034483*0.1*t = -0.68966*0.1*t


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./pressure_x]
    type = FunctionNeumannBC
    variable = disp_x
    function = -0.1*t
    boundary = 'right'
  [../]
  [./pressure_y]
    type = FunctionNeumannBC
    variable = disp_y
    function = -0.1*t
    boundary = 'top'
  [../]
  [./pressure_z]
    type = FunctionNeumannBC
    variable = disp_z
    function = -0.1*t
    boundary = 'front'
  [../]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back'
  [../]
[]


[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PoroMechanicsCoupling
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PoroMechanicsCoupling
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PoroMechanicsCoupling
    variable = disp_z
    component = 2
  [../]
  [./poro_timederiv]
    type = PoroFullSatTimeDerivative
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]



[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./poro_material]
    type = PoroFullSatMaterial
    porosity0 = 0.1
    biot_coefficient = 0.3
    solid_bulk_compliance = 0.5
    fluid_bulk_compliance = 0.3
    constant_porosity = true
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]

[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = unconsolidated_undrained
  [./csv]
    type = CSV
  [../]
[]

modules/tensor_mechanics/test/tests/scalar_material_damage/scalar_material_damage.i

# This is a basic test of the system for continuum damage mechanics
# materials. It uses ScalarMaterialDamage for the damage model,
# which simply gets its damage index from another material. In this
# case, we prescribe the evolution of the damage index using a
# function. A single element has a fixed prescribed displacement
# on one side that puts the element in tension, and then the
# damage index evolves from 0 to 1 over time, and this verifies
# that the stress correspondingly drops to 0.

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
[]

[AuxVariables]
  [damage_index]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[Modules/TensorMechanics/Master]
  [all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_xx strain_xx'
  []
[]

[AuxKernels]
  [damage_index]
    type = MaterialRealAux
    variable = damage_index
    property = damage_index_prop
    execute_on = timestep_end
  []
[]

[BCs]
  [symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  []
  [symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  []
  [symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  []
  [axial_load]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.01
  []
[]

[Functions]
  [damage_evolution]
    type = PiecewiseLinear
    xy_data = '0.0   0.0
               0.1   0.0
               2.1   2.0'
  []
[]

[Materials]
  [damage_index]
    type = GenericFunctionMaterial
    prop_names = damage_index_prop
    prop_values = damage_evolution
  []
  [damage]
    type = ScalarMaterialDamage
    damage_index = damage_index_prop
  []
  [stress]
    type = ComputeDamageStress
    damage_model = damage
  []
  [elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.2
    youngs_modulus = 10e9
  []
[]

[Postprocessors]
  [stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  []
  [strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  []
  [damage_index]
    type = ElementAverageValue
    variable = damage_index
  []
[]

[Executioner]
  type = Transient

  l_max_its  = 50
  l_tol      = 1e-8
  nl_max_its = 20
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-8

  dt = 0.1
  dtmin = 0.1
  end_time = 1.1
[]

[Outputs]
  csv=true
[]

modules/tensor_mechanics/test/tests/ad_viscoplasticity_stress_update/lps_single_split.i

# This test provides an example of combining two LPS viscoplasticity model.
# The answer should be close, but not exactly the same, as lps_single.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmax = 0.002
  ymax = 0.002
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  add_variables = true
  generate_output = 'strain_xx strain_yy strain_xy hydrostatic_stress vonmises_stress'
  use_automatic_differentiation = true
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0 0.1'
    y = '0 1e-5'
  [../]
  [./tot_effective_viscoplasticity]
    type = ParsedFunction
    vals = 'lps_1_eff_creep_strain lps_2_eff_creep_strain'
    vars = 'lps_1_eff_creep_strain lps_2_eff_creep_strain'
    value = 'lps_1_eff_creep_strain+lps_2_eff_creep_strain'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ADComputeMultiplePorousInelasticStress
    inelastic_models = 'one two'
    initial_porosity = 0.1
    outputs = all
  [../]

  [./one]
    type = ADViscoplasticityStressUpdate
    coefficient = 'coef'
    power = 3
    base_name = 'lps_first'
    outputs = all
    relative_tolerance = 1e-11
  [../]
  [./two]
    type = ADViscoplasticityStressUpdate
    coefficient = 'coef'
    power = 3
    base_name = 'lps_second'
    outputs = all
    relative_tolerance = 1e-11
  [../]
  [./coef]
    type = ParsedMaterial
    f_name = coef
    # Example of creep power law
    function = '0.5e-18 * exp(-4e4 / 1.987 / 1200)'
  [../]
[]

[BCs]
  [./no_disp_x]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_disp_y]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./pull_disp_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pull
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 0.01
  end_time = 0.12
[]

[Postprocessors]
  [./disp_x]
    type = SideAverageValue
    variable = disp_x
    boundary = right
  [../]
  [./disp_y]
    type = SideAverageValue
    variable = disp_y
    boundary = top
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
  [../]
  [./dt]
    type = TimestepSize
  [../]
  [./num_lin]
    type = NumLinearIterations
    outputs = console
  [../]
  [./num_nonlin]
    type = NumNonlinearIterations
    outputs = console
  [../]
  [./lps_1_eff_creep_strain]
    type = ElementAverageValue
    variable = lps_first_effective_viscoplasticity
    outputs = none
  [../]
  [./lps_2_eff_creep_strain]
    type = ElementAverageValue
    variable = lps_second_effective_viscoplasticity
    outputs = none
  [../]
  [./eff_creep_strain_tot]
    type = FunctionValuePostprocessor
    function = tot_effective_viscoplasticity
  [../]
  [./porosity]
    type = ElementAverageValue
    variable = porosity
  [../]
[]

[Outputs]
  csv = true
[]

modules/navier_stokes/test/tests/ins/lid_driven/lid_driven_split.i

[GlobalParams]
  gravity = '0 0 0'
[]

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 1.0
    ymin = 0
    ymax = 1.0
    nx = 40
    ny = 40
    elem_type = QUAD4
  []
  [./corner_node]
    type = ExtraNodesetGenerator
    boundary = 99
    nodes = '0'
    input = gen
  [../]
[]

[Variables]
  # x-velocity
  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0.0
    [../]
  [../]

  # y-velocity
  [./v]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0.0
    [../]
  [../]

  # x-acceleration
  [./a1]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0.0
    [../]
  [../]

  # y-acceleration
  [./a2]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0.0
    [../]
  [../]

  # Pressure
  [./p]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]



[Kernels]
  # split-momentum, x
  [./x_split_momentum]
    type = INSSplitMomentum
    variable = a1
    u = u
    v = v
    a1 = a1
    a2 = a2
    component = 0
  [../]

  # split-momentum, y
  [./y_split_momentum]
    type = INSSplitMomentum
    variable = a2
    u = u
    v = v
    a1 = a1
    a2 = a2
    component = 1
  [../]

  # projection-x, space
  [./x_proj_space]
    type = INSProjection
    variable = u
    a1 = a1
    a2 = a2
    p = p
    component = 0
  [../]

  # projection-y, space
  [./y_proj_space]
    type = INSProjection
    variable = v
    a1 = a1
    a2 = a2
    p = p
    component = 1
  [../]

  # projection-x, time
  [./x_proj_time]
    type = TimeDerivative
    variable = u
  [../]

  # projection-y, time
  [./y_proj_time]
    type = TimeDerivative
    variable = v
  [../]

  # Pressure
  [./pressure_poisson]
    type = INSPressurePoisson
    variable = p
    a1 = a1
    a2 = a2
  [../]
[]




[BCs]
  [./x_no_slip]
    type = DirichletBC
    variable = u
    boundary = 'bottom right left'
    value = 0.0
  [../]

  [./lid]
    type = DirichletBC
    variable = u
    boundary = 'top'
    value = 100.0
  [../]

  [./y_no_slip]
    type = DirichletBC
    variable = v
    boundary = 'bottom right top left'
    value = 0.0
  [../]

  # Acceleration boundary conditions.  What should these
  # be on the lid?  What should they be in general?  I tried pinning
  # values of acceleration at one node but that didn't seem to work.
  # I also tried setting non-zero acceleration values on the lid but
  # that didn't converge.
  [./x_no_accel]
    type = DirichletBC
    variable = a1
    boundary = 'bottom right top left'
    value = 0.0
  [../]

  [./y_no_accel]
    type = DirichletBC
    variable = a2
    boundary = 'bottom right top left'
    value = 0.0
  [../]

  # With solid walls everywhere, we specify dp/dn=0, i.e the
  # "natural BC" for pressure.  Technically the problem still
  # solves without pinning the pressure somewhere, but the pressure
  # bounces around a lot during the solve, possibly because of
  # the addition of arbitrary constants.
  [./pressure_pin]
    type = DirichletBC
    variable = p
    boundary = '99'
    value = 0
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 0
    # rho = 1000    # kg/m^3
    # mu = 0.798e-3 # Pa-s at 30C
    # cp = 4.179e3  # J/kg-K at 30C
    # k = 0.58      # W/m-K at ?C

    # Dummy parameters
    prop_names = 'rho mu cp k'
    prop_values = '1  1  1  1'
  [../]
[]

[Preconditioning]
# [./FDP_Newton]
#   type = FDP
#   full = true
#   petsc_options = '-snes'
#   #petsc_options_iname = '-mat_fd_coloring_err'
#   #petsc_options_value = '1.e-10'
# [../]

[./SMP_PJFNK]
  type = SMP
  full = true

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


[../]
[]


[Executioner]
  type = Transient
  dt = 1.e-4
  dtmin = 1.e-6
  petsc_options_iname = '-ksp_gmres_restart '
  petsc_options_value = '300                '

  line_search = 'none'

  nl_rel_tol = 1e-5
  nl_max_its = 6
  l_tol = 1e-6
  l_max_its = 100
  start_time = 0.0
  num_steps = 1000
[]




[Outputs]
  file_base = lid_driven_split_out
  exodus = true
[]

modules/combined/test/tests/adaptive_timestepping/adapt_tstep_function_force_step.i

# This is a test designed to evaluate the cabability of the
# IterationAdaptiveDT TimeStepper to adjust time step size according to
# a function.  For example, if the power input function for a BISON
# simulation rapidly increases or decreases, the IterationAdaptiveDT
# TimeStepper should take time steps small enough to capture the
# oscillation.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  block = 1
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = 1hex8_10mm_cube.e
[]

[Functions]
  [./Fiss_Function]
    type = PiecewiseLinear
    data_file = blip.csv
    format = columns
  [../]
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

  [./temp]
    initial_condition = 300.0
  [../]
[]


[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    eigenstrain_names = thermal_expansion
    add_variables  = true
    generate_output = 'vonmises_stress'
  [../]
[]


[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]

  [./heat_source]
     type = HeatSource
     variable = temp
     value = 1.0
     function = Fiss_Function
  [../]
[]

[BCs]
 [./bottom_temp]
   type = DirichletBC
   variable = temp
   boundary = 1
   value = 300
 [../]
 [./top_bottom_disp_x]
   type = DirichletBC
   variable = disp_x
   boundary = '1'
   value = 0
 [../]
 [./top_bottom_disp_y]
   type = DirichletBC
   variable = disp_y
   boundary = '1'
   value = 0
 [../]
 [./top_bottom_disp_z]
   type = DirichletBC
   variable = disp_z
   boundary = '1'
   value = 0
 [../]
[]

[Materials]
 [./thermal]
    type = HeatConductionMaterial
    temp = temp
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 300e6
    poissons_ratio = .3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 5e-6
    stress_free_temperature = 300.0
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]

  [./density]
    type = Density
    density = 10963.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  verbose = true
  nl_abs_tol = 1e-10
  start_time = 0.0
  num_steps = 50000

  end_time = 5.1e3
  [./TimeStepper]
    type = IterationAdaptiveDT
    timestep_limiting_function = Fiss_Function
    max_function_change = 3e20
    force_step_every_function_point = true
    dt = 1e2
  [../]
[]

[Postprocessors]
  [./Temperature_of_Block]
    type = ElementAverageValue
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./vonMises]
    type = ElementAverageValue
    variable = vonmises_stress
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/richards/test/tests/dirac/bh04.i

# unsaturated
# production
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1 1E1 1E2 1E3'
    x = '0 1E-1 1 1E1 1E2 1E3'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = -1E6
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = 1
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 0
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]

[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-12 0 0  0 1E-12 0  0 0 1E-12'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1E3
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  file_base = bh04
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/phase_field/examples/multiphase/DerivativeMultiPhaseMaterial.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  nz = 0
  xmin = -12
  xmax = 12
  ymin = -12
  ymax = 12
  elem_type = QUAD4
[]

[GlobalParams]
  # let's output all material properties for demonstration purposes
  outputs = exodus

  # prefactor on the penalty function kernels. The higher this value is, the
  # more rigorously the constraint is enforced
  penalty = 1e3
[]

#
# These AuxVariables hold the directly calculated free energy density in the
# simulation cell. They are provided for visualization purposes.
#
[AuxVariables]
  [./local_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./cross_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./local_free_energy]
    type = TotalFreeEnergy
    variable = local_energy
    interfacial_vars = 'c'
    kappa_names = 'kappa_c'
    additional_free_energy = cross_energy
  [../]

  #
  # Helper kernel to cpompute the gradient contribution from interfaces of order
  # parameters evolved using the ACMultiInterface kernel
  #
  [./cross_terms]
    type = CrossTermGradientFreeEnergy
    variable = cross_energy
    interfacial_vars = 'eta1 eta2 eta3'
    #
    # The interface coefficient matrix. This should be symmetrical!
    #
    kappa_names = 'kappa11 kappa12 kappa13
                   kappa21 kappa22 kappa23
                   kappa31 kappa32 kappa33'
  [../]
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    #
    # We set up a smooth cradial concentrtaion gradient
    # The concentration will quickly change to adapt to the preset order
    # parameters eta1, eta2, and eta3
    #
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0.0
      y1 = 0.0
      radius = 5.0
      invalue = 1.0
      outvalue = 0.01
      int_width = 10.0
    [../]
  [../]

  [./eta1]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      #
      # Note: this initial conditions sets up a _sharp_ interface. Ideally
      # we should start with a smooth interface with a width consistent
      # with the kappa parameter supplied for the given interface.
      #
      function = 'r:=sqrt(x^2+y^2);if(r<=4,1,0)'
    [../]
  [../]
  [./eta2]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = 'r:=sqrt(x^2+y^2);if(r>4&r<=7,1,0)'
    [../]
  [../]
  [./eta3]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = 'r:=sqrt(x^2+y^2);if(r>7,1,0)'
    [../]
  [../]
[]

[Kernels]
  #
  # Cahn-Hilliard kernel for the concentration variable.
  # Note that we are not using an interfcae kernel on this variable, but rather
  # rely on the interface width enforced on the order parameters. This allows us
  # to use a direct solve using the CahnHilliard kernel _despite_ only using first
  # order elements.
  #
  [./c_res]
    type = CahnHilliard
    variable = c
    f_name = F
    args = 'eta1 eta2 eta3'
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]

  #
  # Order parameter eta1
  # Each order parameter is acted on by 4 kernels:
  #  1. The stock time derivative deta_i/dt kernel
  #  2. The Allen-Cahn kernel that takes a Dervative Material for the free energy
  #  3. A gradient interface kernel that includes cross terms
  #     see http://mooseframework.org/wiki/PhysicsModules/PhaseField/DevelopingModels/MultiPhaseModels/ACMultiInterface/
  #  4. A penalty contribution that forces the interface contributions h(eta)
  #     to sum up to unity
  #
  [./deta1dt]
    type = TimeDerivative
    variable = eta1
  [../]
  [./ACBulk1]
    type = AllenCahn
    variable = eta1
    args = 'eta2 eta3 c'
    mob_name = L1
    f_name = F
  [../]
  [./ACInterface1]
    type = ACMultiInterface
    variable = eta1
    etas = 'eta1 eta2 eta3'
    mob_name = L1
    kappa_names = 'kappa11 kappa12 kappa13'
  [../]
  [./penalty1]
    type = SwitchingFunctionPenalty
    variable = eta1
    etas    = 'eta1 eta2 eta3'
    h_names = 'h1   h2   h3'
  [../]

  #
  # Order parameter eta2
  #
  [./deta2dt]
    type = TimeDerivative
    variable = eta2
  [../]
  [./ACBulk2]
    type = AllenCahn
    variable = eta2
    args = 'eta1 eta3 c'
    mob_name = L2
    f_name = F
  [../]
  [./ACInterface2]
    type = ACMultiInterface
    variable = eta2
    etas = 'eta1 eta2 eta3'
    mob_name = L2
    kappa_names = 'kappa21 kappa22 kappa23'
  [../]
  [./penalty2]
    type = SwitchingFunctionPenalty
    variable = eta2
    etas    = 'eta1 eta2 eta3'
    h_names = 'h1   h2   h3'
  [../]

  #
  # Order parameter eta3
  #
  [./deta3dt]
    type = TimeDerivative
    variable = eta3
  [../]
  [./ACBulk3]
    type = AllenCahn
    variable = eta3
    args = 'eta1 eta2 c'
    mob_name = L3
    f_name = F
  [../]
  [./ACInterface3]
    type = ACMultiInterface
    variable = eta3
    etas = 'eta1 eta2 eta3'
    mob_name = L3
    kappa_names = 'kappa31 kappa32 kappa33'
  [../]
  [./penalty3]
    type = SwitchingFunctionPenalty
    variable = eta3
    etas    = 'eta1 eta2 eta3'
    h_names = 'h1   h2   h3'
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  # here we declare some of the model parameters: the mobilities and interface
  # gradient prefactors. For this example we use arbitrary numbers. In an actual simulation
  # physical mobilities would be used, and the interface gradient prefactors would
  # be readjusted to the free energy magnitudes.
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'M   kappa_c L1 L2 L3  kappa11 kappa12 kappa13 kappa21 kappa22 kappa23 kappa31 kappa32 kappa33'
    prop_values = '0.2 0.75    1  1  1   0.75    0.75    0.75    0.75    0.75    0.75    0.75    0.75    0.75   '
  [../]

  # This material sums up the individual phase contributions. It is written to the output file
  # (see GlobalParams section above) and can be used to check the constraint enforcement.
  [./etasummat]
    type = ParsedMaterial
    f_name = etasum
    args = 'eta1 eta2 eta3'
    material_property_names = 'h1 h2 h3'
    function = 'h1+h2+h3'
  [../]

  # The phase contribution factors for each material point are computed using the
  # SwitchingFunctionMaterials. Each phase with an order parameter eta contributes h(eta)
  # to the global free energy density. h is a function that switches smoothly from 0 to 1
  [./switching1]
    type = SwitchingFunctionMaterial
    function_name = h1
    eta = eta1
    h_order = SIMPLE
  [../]
  [./switching2]
    type = SwitchingFunctionMaterial
    function_name = h2
    eta = eta2
    h_order = SIMPLE
  [../]
  [./switching3]
    type = SwitchingFunctionMaterial
    function_name = h3
    eta = eta3
    h_order = SIMPLE
  [../]

  # The barrier function adds a phase transformation energy barrier. It also
  # Drives order parameters toward the [0:1] interval to avoid negative or larger than 1
  # order parameters (these are set to 0 and 1 contribution by the switching functions
  # above)
  [./barrier]
    type = MultiBarrierFunctionMaterial
    etas = 'eta1 eta2 eta3'
  [../]

  # We use DerivativeParsedMaterials to specify three (very) simple free energy
  # expressions for the three phases. All necessary derivatives are built automatically.
  # In a real problem these expressions can be arbitrarily complex (or even provided
  # by custom kernels).
  [./phase_free_energy_1]
    type = DerivativeParsedMaterial
    f_name = F1
    function = '(c-1)^2'
    args = 'c'
  [../]
  [./phase_free_energy_2]
    type = DerivativeParsedMaterial
    f_name = F2
    function = '(c-0.5)^2'
    args = 'c'
  [../]
  [./phase_free_energy_3]
    type = DerivativeParsedMaterial
    f_name = F3
    function = 'c^2'
    args = 'c'
  [../]

  # The DerivativeMultiPhaseMaterial ties the phase free energies together into a global free energy.
  # http://mooseframework.org/wiki/PhysicsModules/PhaseField/DevelopingModels/MultiPhaseModels/
  [./free_energy]
    type = DerivativeMultiPhaseMaterial
    f_name = F
    # we use a constant free energy (GeneriConstantmaterial property Fx)
    fi_names = 'F1  F2  F3'
    hi_names = 'h1  h2  h3'
    etas     = 'eta1 eta2 eta3'
    args = 'c'
    W = 1
  [../]
[]

[Postprocessors]
  # The total free energy of the simulation cell to observe the energy reduction.
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    variable = local_energy
  [../]

  # for testing we also monitor the total solute amount, which should be conserved.
  [./total_solute]
    type = ElementIntegralVariablePostprocessor
    variable = c
  [../]
[]

[Preconditioning]
  # This preconditioner makes sure the Jacobian Matrix is fully populated. Our
  # kernels compute all Jacobian matrix entries.
  # This allows us to use the Newton solver below.
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  # Automatic differentiation provedes a _full_ Jacobian in this example
  # so we can safely use NEWTON for a fast solve
  solve_type = 'NEWTON'

  l_max_its = 15
  l_tol = 1.0e-6

  nl_max_its = 50
  nl_rel_tol = 1.0e-6
  nl_abs_tol = 1.0e-6

  start_time = 0.0
  end_time   = 150.0

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.1
  [../]
[]

[Debug]
  # show_var_residual_norms = true
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  [./table]
    type = CSV
    delimiter = ' '
  [../]
[]

modules/porous_flow/test/tests/dirackernels/bh_except08.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
    at_nodes = false # Needed to force expected error
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = bh02.bh
    use_mobility = true
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/combined/test/tests/heat_conduction_xfem/heat.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 6
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  geometric_cut_userobjects = 'line_seg_cut_uo'
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5  1.0  0.5  0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Variables]
  [./temp]
    initial_condition = 300.0     # set initial temp to ambient
  [../]
[]

[Functions]
  [./temp_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
[]

[Kernels]
  [./heat]         # gradient term in heat conduction equation
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = 3
    function = temp_left
  [../]

  [./right_temp]
    type = DirichletBC
    variable = temp
    boundary = 1
    value = 0
  [../]
[]

[Materials]
  [./fuel_thermal]
    type = HeatConductionMaterial
    block = 0
    temp = temp
    thermal_conductivity = 5.0
    specific_heat = 1.0
  [../]
[]

[Executioner]

  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  l_max_its = 100
  l_tol = 8e-3

  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
  num_steps = 2
[]

[Outputs]
  # Define output file(s)

  file_base = heat_out
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/richards/test/tests/jacobian_2/jn01.i

# two phase
# unsaturated = true

# gravity = false
# supg = false
# transient = false

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardsfgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn01
  exodus = false
[]

python/chigger/tests/input/mug_blocks.i

[Mesh]
  type = FileMesh
  file = mug.e
[]

[MeshModifiers]
  [./subdomains]
    type = SubdomainBoundingBox
    top_right = '3 3 3'
    bottom_left = '0 -3 -2.1'
    block_id = '76'
  [../]
[]

[Variables]
  [./convected]
    order = FIRST
    family = LAGRANGE
  [../]
  [./diffused]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./aux_elem]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff_convected]
    type = Diffusion
    variable = convected
  [../]
  [./conv]
    # Couple a variable into the convection kernel using local_name = simulationg_name syntax
    type = Convection
    variable = convected
    velocity = '1 1 1'
  [../]
  [./diff_diffused]
    type = Diffusion
    variable = diffused
  [../]
  [./diff_t]
    type = TimeDerivative
    variable = diffused
  [../]
  [./conv_t]
    type = TimeDerivative
    variable = convected
    block = '76'
  [../]
[]

[BCs]
  [./bottom_convected]
    type = DirichletBC
    variable = convected
    boundary = bottom
    value = 1
  [../]
  [./top_convected]
    type = DirichletBC
    variable = convected
    boundary = top
    value = 0
  [../]
  [./bottom_diffused]
    type = DirichletBC
    variable = diffused
    boundary = bottom
    value = 2
  [../]
  [./top_diffused]
    type = DirichletBC
    variable = diffused
    boundary = top
    value = 0
  [../]
[]

[Postprocessors]
  [./func_pp]
    type = FunctionValuePostprocessor
    function = 2*t
  [../]
[]

[Executioner]
  # Preconditioned JFNK (default)
  type = Transient
  num_steps = 20
  solve_type = PJFNK
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

[ICs]
  [./aux_ic]
    variable = aux_elem
    max = 10
    seed = 2
    type = RandomIC
  [../]
[]

test/tests/geomsearch/patch_update_strategy/always-grid-sequence.i

[Mesh]
  type = FileMesh
  file = long_range_coarse.e
  dim = 2
  patch_update_strategy = always
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  solution_variables = 'u'
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./linear_field]
  [../]
  [./receiver]
    # The field to transfer into
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./elemental_reciever]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 1
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./linear_in_y]
    # This just gives us something to transfer that varies in y so we can ensure the transfer is working properly...
    type = FunctionAux
    variable = linear_field
    function = y
    execute_on = initial
  [../]
  [./right_to_left]
    type = GapValueAux
    variable = receiver
    paired_variable = linear_field
    paired_boundary = rightleft
    execute_on = timestep_end
    boundary = leftright
  [../]
  [./y_displacement]
    type = FunctionAux
    variable = disp_y
    function = t
    execute_on = 'linear timestep_begin'
    block = left
  [../]
  [./elemental_right_to_left]
    type = GapValueAux
    variable = elemental_reciever
    paired_variable = linear_field
    paired_boundary = rightleft
    boundary = leftright
  [../]
[]

[BCs]
  [./top]
    type = FunctionDirichletBC
    variable = u
    boundary = 'lefttop righttop'
    function = 't'
  [../]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = 'leftbottom rightbottom'
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  num_grids = 2
[]

[Outputs]
  exodus = true
[]

[Postprocessors]
  [num_nl]
    type = NumNonlinearIterations
  []
  [total_nl]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  []
[]

test/tests/restart/new_dt/new_dt_restart.i

[Mesh]
  file = new_dt_out_cp/0010_mesh.cpr
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10

  # Here we are supplying a different dt
  dt = 0.25
  start_time = 1.0

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./exodus]
    type = Exodus
    execute_on = 'timestep_end final'
  [../]
[]

[Problem]
  restart_file_base = new_dt_out_cp/0010
[]

test/tests/transfers/multiapp_userobject_transfer/two_pipe_master.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 3
    xmin = 0
    xmax = 5
    nx = 5

    ymin = 0
    ymax = 5
    ny = 5

    zmin = 0
    zmax = 5
    nz = 5
  []
  [./blocks]
    input = gen
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '1 1 0'
    top_right = '4 4 5'
  [../]
[]

[AuxVariables]
  [./from_sub_app_var]
    order = CONSTANT
    family = MONOMIAL
    block = 1
    initial_condition = 0
  [../]
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [td]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = front
    value = -1
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = back
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 5

  solve_type = 'NEWTON'
  l_tol = 1e-8
  nl_rel_tol = 1e-10
[]

[Outputs]
  exodus = true
  execute_on = final
[]

[MultiApps]
  [sub_app]
    type = TransientMultiApp
    positions = '0 0 0'
    input_files = two_pipe_sub.i
    app_type = MooseTestApp
    execute_on = TIMESTEP_END
  []
[]

[Transfers]
  [layered_transfer_from_sub_app]
    type = MultiAppUserObjectTransfer
    direction = from_multiapp
    user_object = sub_app_uo
    variable = from_sub_app_var
    multi_app = sub_app
    displaced_source_mesh = true
    skip_bounding_box_check = true
  []
[]

modules/combined/test/tests/poro_mechanics/borehole_lowres.i

# Poroelastic response of a borehole.
#
# LOWRES VERSION: this version does not give perfect agreement with the analytical solution
#
# A fully-saturated medium contains a fluid with a homogeneous porepressure,
# but an anisitropic insitu stress.  A infinitely-long borehole aligned with
# the $$z$$ axis is instanteously excavated.  The borehole boundary is
# stress-free and allowed to freely drain.  This problem is analysed using
# plane-strain conditions (no $$z$$ displacement).
#
# The solution in Laplace space is found in E Detournay and AHD Cheng "Poroelastic response of a borehole in a non-hydrostatic stress field".  International Journal of Rock Mechanics and Mining Sciences and Geomechanics Abstracts 25 (1988) 171-182.  In the small-time limit, the Laplace transforms may be performed.  There is one typo in the paper.  Equation (A4)'s final term should be -(a/r)\sqrt(4ct/(a^2\pi)), and not +(a/r)\sqrt(4ct/(a^2\pi)).
#
# Because realistic parameters are chosen (below),
# the residual for porepressure is much smaller than
# the residuals for the displacements.  Therefore the
# scaling parameter is chosen.  Also note that the
# insitu stresses are effective stresses, not total
# stresses, but the solution in the above paper is
# expressed in terms of total stresses.
#
# Here are the problem's parameters, and their values:
# Borehole radius.  a = 1
# Rock's Lame lambda.  la = 0.5E9
# Rock's Lame mu, which is also the Rock's shear modulus.  mu = G = 1.5E9
# Rock bulk modulus.  K = la + 2*mu/3 = 1.5E9
# Drained Poisson ratio.  nu = (3K - 2G)/(6K + 2G) = 0.125
# Rock bulk compliance.  1/K = 0.66666666E-9
# Fluid bulk modulus.  Kf = 0.7171315E9
# Fluid bulk compliance.  1/Kf = 1.39444444E-9
# Rock initial porosity.  phi0 = 0.3
# Biot coefficient.  alpha = 0.65
# Biot modulus.  M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 2E9
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.345E9
# Undrained Poisson ratio.  nuu = (3Ku - 2G)/(6Ku + 2G) = 0.2364
# Skempton coefficient.  B = alpha*M/Ku = 0.554
# Fluid mobility (rock permeability/fluid viscosity).  k = 1E-12

[Mesh]
  type = FileMesh
  file = borehole_lowres_input.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  block = 1
[]

[GlobalParams]
  volumetric_locking_correction=true
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
    scaling = 1E9  # Notice the scaling, to make porepressure's kernels roughly of same magnitude as disp's kernels
  [../]
[]

[ICs]
  [./initial_p]
    type = ConstantIC
    variable = porepressure
    value = 1E6
  [../]
[]

[BCs]
  [./fixed_outer_x]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = outer
  [../]
  [./fixed_outer_y]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = outer
  [../]
  [./plane_strain]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'zmin zmax'
  [../]
  [./borehole_wall]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = bh_wall
  [../]
[]



[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./tot_yy]
    type = ParsedAux
    args = 'stress_yy porepressure'
    execute_on = timestep_end
    variable = tot_yy
    function = 'stress_yy-0.65*porepressure'
  [../]
[]



[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PoroMechanicsCoupling
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PoroMechanicsCoupling
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PoroMechanicsCoupling
    variable = disp_z
    component = 2
  [../]
  [./poro_timederiv]
    type = PoroFullSatTimeDerivative
    variable = porepressure
  [../]
  [./darcy_flow]
    type = CoefDiffusion
    variable = porepressure
    coef = 1E-12
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5E9 1.5E9'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*1.5/3 = 1.5E9
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-1.35E6 0 0  0 -3.35E6 0  0 0 0' # remember this is the effective stress
    eigenstrain_name = ini_stress
  [../]
  [./no_plasticity]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./poro_material]
    type = PoroFullSatMaterial
    porosity0 = 0.3
    biot_coefficient = 0.65
    solid_bulk_compliance = 0.6666666666667E-9
    fluid_bulk_compliance = 1.3944444444444E-9
    constant_porosity = false
  [../]
[]

[Postprocessors]
  [./p00]
    type = PointValue
    variable = porepressure
    point = '1.00 0 0'
    outputs = csv_p
  [../]
  [./p01]
    type = PointValue
    variable = porepressure
    point = '1.01 0 0'
    outputs = csv_p
  [../]
  [./p02]
    type = PointValue
    variable = porepressure
    point = '1.02 0 0'
    outputs = csv_p
  [../]
  [./p03]
    type = PointValue
    variable = porepressure
    point = '1.03 0 0'
    outputs = csv_p
  [../]
  [./p04]
    type = PointValue
    variable = porepressure
    point = '1.04 0 0'
    outputs = csv_p
  [../]
  [./p05]
    type = PointValue
    variable = porepressure
    point = '1.05 0 0'
    outputs = csv_p
  [../]
  [./p06]
    type = PointValue
    variable = porepressure
    point = '1.06 0 0'
    outputs = csv_p
  [../]
  [./p07]
    type = PointValue
    variable = porepressure
    point = '1.07 0 0'
    outputs = csv_p
  [../]
  [./p08]
    type = PointValue
    variable = porepressure
    point = '1.08 0 0'
    outputs = csv_p
  [../]
  [./p09]
    type = PointValue
    variable = porepressure
    point = '1.09 0 0'
    outputs = csv_p
  [../]
  [./p10]
    type = PointValue
    variable = porepressure
    point = '1.10 0 0'
    outputs = csv_p
  [../]
  [./p11]
    type = PointValue
    variable = porepressure
    point = '1.11 0 0'
    outputs = csv_p
  [../]
  [./p12]
    type = PointValue
    variable = porepressure
    point = '1.12 0 0'
    outputs = csv_p
  [../]
  [./p13]
    type = PointValue
    variable = porepressure
    point = '1.13 0 0'
    outputs = csv_p
  [../]
  [./p14]
    type = PointValue
    variable = porepressure
    point = '1.14 0 0'
    outputs = csv_p
  [../]
  [./p15]
    type = PointValue
    variable = porepressure
    point = '1.15 0 0'
    outputs = csv_p
  [../]
  [./p16]
    type = PointValue
    variable = porepressure
    point = '1.16 0 0'
    outputs = csv_p
  [../]
  [./p17]
    type = PointValue
    variable = porepressure
    point = '1.17 0 0'
    outputs = csv_p
  [../]
  [./p18]
    type = PointValue
    variable = porepressure
    point = '1.18 0 0'
    outputs = csv_p
  [../]
  [./p19]
    type = PointValue
    variable = porepressure
    point = '1.19 0 0'
    outputs = csv_p
  [../]
  [./p20]
    type = PointValue
    variable = porepressure
    point = '1.20 0 0'
    outputs = csv_p
  [../]
  [./p21]
    type = PointValue
    variable = porepressure
    point = '1.21 0 0'
    outputs = csv_p
  [../]
  [./p22]
    type = PointValue
    variable = porepressure
    point = '1.22 0 0'
    outputs = csv_p
  [../]
  [./p23]
    type = PointValue
    variable = porepressure
    point = '1.23 0 0'
    outputs = csv_p
  [../]
  [./p24]
    type = PointValue
    variable = porepressure
    point = '1.24 0 0'
    outputs = csv_p
  [../]
  [./p25]
    type = PointValue
    variable = porepressure
    point = '1.25 0 0'
    outputs = csv_p
  [../]

  [./s00]
    type = PointValue
    variable = disp_x
    point = '1.00 0 0'
    outputs = csv_s
  [../]
  [./s01]
    type = PointValue
    variable = disp_x
    point = '1.01 0 0'
    outputs = csv_s
  [../]
  [./s02]
    type = PointValue
    variable = disp_x
    point = '1.02 0 0'
    outputs = csv_s
  [../]
  [./s03]
    type = PointValue
    variable = disp_x
    point = '1.03 0 0'
    outputs = csv_s
  [../]
  [./s04]
    type = PointValue
    variable = disp_x
    point = '1.04 0 0'
    outputs = csv_s
  [../]
  [./s05]
    type = PointValue
    variable = disp_x
    point = '1.05 0 0'
    outputs = csv_s
  [../]
  [./s06]
    type = PointValue
    variable = disp_x
    point = '1.06 0 0'
    outputs = csv_s
  [../]
  [./s07]
    type = PointValue
    variable = disp_x
    point = '1.07 0 0'
    outputs = csv_s
  [../]
  [./s08]
    type = PointValue
    variable = disp_x
    point = '1.08 0 0'
    outputs = csv_s
  [../]
  [./s09]
    type = PointValue
    variable = disp_x
    point = '1.09 0 0'
    outputs = csv_s
  [../]
  [./s10]
    type = PointValue
    variable = disp_x
    point = '1.10 0 0'
    outputs = csv_s
  [../]
  [./s11]
    type = PointValue
    variable = disp_x
    point = '1.11 0 0'
    outputs = csv_s
  [../]
  [./s12]
    type = PointValue
    variable = disp_x
    point = '1.12 0 0'
    outputs = csv_s
  [../]
  [./s13]
    type = PointValue
    variable = disp_x
    point = '1.13 0 0'
    outputs = csv_s
  [../]
  [./s14]
    type = PointValue
    variable = disp_x
    point = '1.14 0 0'
    outputs = csv_s
  [../]
  [./s15]
    type = PointValue
    variable = disp_x
    point = '1.15 0 0'
    outputs = csv_s
  [../]
  [./s16]
    type = PointValue
    variable = disp_x
    point = '1.16 0 0'
    outputs = csv_s
  [../]
  [./s17]
    type = PointValue
    variable = disp_x
    point = '1.17 0 0'
    outputs = csv_s
  [../]
  [./s18]
    type = PointValue
    variable = disp_x
    point = '1.18 0 0'
    outputs = csv_s
  [../]
  [./s19]
    type = PointValue
    variable = disp_x
    point = '1.19 0 0'
    outputs = csv_s
  [../]
  [./s20]
    type = PointValue
    variable = disp_x
    point = '1.20 0 0'
    outputs = csv_s
  [../]
  [./s21]
    type = PointValue
    variable = disp_x
    point = '1.21 0 0'
    outputs = csv_s
  [../]
  [./s22]
    type = PointValue
    variable = disp_x
    point = '1.22 0 0'
    outputs = csv_s
  [../]
  [./s23]
    type = PointValue
    variable = disp_x
    point = '1.23 0 0'
    outputs = csv_s
  [../]
  [./s24]
    type = PointValue
    variable = disp_x
    point = '1.24 0 0'
    outputs = csv_s
  [../]
  [./s25]
    type = PointValue
    variable = disp_x
    point = '1.25 0 0'
    outputs = csv_s
  [../]

  [./t00]
    type = PointValue
    variable = tot_yy
    point = '1.00 0 0'
    outputs = csv_t
  [../]
  [./t01]
    type = PointValue
    variable = tot_yy
    point = '1.01 0 0'
    outputs = csv_t
  [../]
  [./t02]
    type = PointValue
    variable = tot_yy
    point = '1.02 0 0'
    outputs = csv_t
  [../]
  [./t03]
    type = PointValue
    variable = tot_yy
    point = '1.03 0 0'
    outputs = csv_t
  [../]
  [./t04]
    type = PointValue
    variable = tot_yy
    point = '1.04 0 0'
    outputs = csv_t
  [../]
  [./t05]
    type = PointValue
    variable = tot_yy
    point = '1.05 0 0'
    outputs = csv_t
  [../]
  [./t06]
    type = PointValue
    variable = tot_yy
    point = '1.06 0 0'
    outputs = csv_t
  [../]
  [./t07]
    type = PointValue
    variable = tot_yy
    point = '1.07 0 0'
    outputs = csv_t
  [../]
  [./t08]
    type = PointValue
    variable = tot_yy
    point = '1.08 0 0'
    outputs = csv_t
  [../]
  [./t09]
    type = PointValue
    variable = tot_yy
    point = '1.09 0 0'
    outputs = csv_t
  [../]
  [./t10]
    type = PointValue
    variable = tot_yy
    point = '1.10 0 0'
    outputs = csv_t
  [../]
  [./t11]
    type = PointValue
    variable = tot_yy
    point = '1.11 0 0'
    outputs = csv_t
  [../]
  [./t12]
    type = PointValue
    variable = tot_yy
    point = '1.12 0 0'
    outputs = csv_t
  [../]
  [./t13]
    type = PointValue
    variable = tot_yy
    point = '1.13 0 0'
    outputs = csv_t
  [../]
  [./t14]
    type = PointValue
    variable = tot_yy
    point = '1.14 0 0'
    outputs = csv_t
  [../]
  [./t15]
    type = PointValue
    variable = tot_yy
    point = '1.15 0 0'
    outputs = csv_t
  [../]
  [./t16]
    type = PointValue
    variable = tot_yy
    point = '1.16 0 0'
    outputs = csv_t
  [../]
  [./t17]
    type = PointValue
    variable = tot_yy
    point = '1.17 0 0'
    outputs = csv_t
  [../]
  [./t18]
    type = PointValue
    variable = tot_yy
    point = '1.18 0 0'
    outputs = csv_t
  [../]
  [./t19]
    type = PointValue
    variable = tot_yy
    point = '1.19 0 0'
    outputs = csv_t
  [../]
  [./t20]
    type = PointValue
    variable = tot_yy
    point = '1.20 0 0'
    outputs = csv_t
  [../]
  [./t21]
    type = PointValue
    variable = tot_yy
    point = '1.21 0 0'
    outputs = csv_t
  [../]
  [./t22]
    type = PointValue
    variable = tot_yy
    point = '1.22 0 0'
    outputs = csv_t
  [../]
  [./t23]
    type = PointValue
    variable = tot_yy
    point = '1.23 0 0'
    outputs = csv_t
  [../]
  [./t24]
    type = PointValue
    variable = tot_yy
    point = '1.24 0 0'
    outputs = csv_t
  [../]
  [./t25]
    type = PointValue
    variable = tot_yy
    point = '1.25 0 0'
    outputs = csv_t
  [../]

  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = 2*t
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_monitor -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it -sub_pc_type -sub_pc_factor_shift_type'
    petsc_options_value = 'gmres asm 1E0 1E-10 200 500 lu NONZERO'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 0.3
  dt = 0.3
  #[./TimeStepper]
  #  type = PostprocessorDT
  #  postprocessor = dt
  #  dt = 0.003
  #[../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = borehole_lowres
  exodus = true
  sync_times = '0.003 0.3'
  [./csv_p]
    file_base = borehole_lowres_p
    type = CSV
  [../]
  [./csv_s]
    file_base = borehole_lowres_s
    type = CSV
  [../]
  [./csv_t]
    file_base = borehole_lowres_t
    type = CSV
  [../]
[]

modules/tensor_mechanics/test/tests/dynamics/wave_1D/wave_rayleigh_hht_ti.i

# Wave propogation in 1D using HHT time integration in the presence of Rayleigh damping
#
# The test is for an 1D bar element of length 4m  fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the other end.
# alpha, beta and gamma are HHT  time integration parameters
# eta and zeta are mass dependent and stiffness dependent Rayleigh damping
# coefficients, respectively.
# The equation of motion in terms of matrices is:
#
# M*accel + (eta*M+zeta*K)*((1+alpha)*vel-alpha*vel_old)
# +(1+alpha)*K*disp-alpha*K*disp_old = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# The displacement at the first, second, third and fourth node at t = 0.1 are
# -7.787499960311491942e-02, 1.955566679096475483e-02 and -4.634888180231294501e-03, respectively.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
[]

[Kernels]
  [./DynamicTensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    alpha = -0.3
    zeta = 0.1
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    eta=0.1
    alpha = -0.3
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    eta=0.1
    alpha = -0.3
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    eta = 0.1
    alpha = -0.3
  [../]

[]

[AuxKernels]
  [./accel_x] # These auxkernels are only to check output
    type = TestNewmarkTI
    displacement = disp_x
    variable = accel_x
    first = false
  [../]
  [./accel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = accel_y
    first = false
  [../]
  [./accel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = accel_z
    first = false
  [../]
  [./vel_x]
    type = TestNewmarkTI
    displacement = disp_x
    variable = vel_x
  [../]
  [./vel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = vel_y
  [../]
  [./vel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = vel_z
  [../]
[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
    type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = bottom
    function = displacement_bc
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1'
  [../]

[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 6.0
  l_tol = 1e-12
  nl_rel_tol = 1e-12
  dt = 0.1

  [./TimeIntegrator]
    type = NewmarkBeta
    beta = 0.422
    gamma = 0.8
  [../]
[]


[Functions]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp_1]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_2]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./disp_3]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./disp_4]
    type = NodalVariableValue
    nodeid = 14
    variable = disp_y
  [../]
[]

[Outputs]
  file_base = 'wave_rayleigh_hht_out'
  exodus = true
  perf_graph = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/fromsub_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  elem_type = QUAD8
[]

[Variables]
  [u]
    family = LAGRANGE
    order = FIRST
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[AuxVariables]
  [nodal_source_from_sub_nodal]
    family = LAGRANGE
    order = FIRST
  []
  [nodal_source_from_sub_elemental]
    family = MONOMIAL
    order = CONSTANT
  []
  [elemental_source_from_sub_nodal]
    family = LAGRANGE
    order = FIRST
  []
  [elemental_source_from_sub_elemental]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0.48 0.01 0 -1.01 0.01 0'
    input_files = fromsub_sub.i
  []
[]

[Transfers]
  [from_sub_nodal_from_nodal]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = nodal_source_from_sub_nodal
  []
  [from_sub_nodal_from_elemental]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = nodal_source_from_sub_elemental
  []
  [from_sub_elemental_from_nodal]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u_elemental
    variable = elemental_source_from_sub_nodal
  []
  [from_sub_elemental_from_elemental]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u_elemental
    variable = elemental_source_from_sub_elemental
  []
[]

modules/combined/test/tests/incremental_slip/incremental_slip_sm.i


[Mesh]
  file = incremental_slip.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[] # Variables

[Functions]
  [./slave_x]
    type = PiecewiseLinear
    x = '0 1 2   3 4 5  6    7 8   9'
    y = '0 0 0.5 0 0 0 -0.25 0 0.5 0'
  [../]
  [./slave_y]
    type = PiecewiseLinear
    x = '0  1     9'
    y = '0 -0.15 -0.15'
  [../]
  [./slave_z]
    type = PiecewiseLinear
    x = '0 1  2   3 4 5 6    7  8   9'
    y = '0 0 -0.5 0 0 0 0.25 0 -0.5 0'
  [../]

  [./master_x]
    type = PiecewiseLinear
    x = '0 1  2 3 4   5 6    7 8   9'
    y = '0 0  0 0 0.5 0 0.25 0 0.5 0'
  [../]
  [./master_y]
    type = PiecewiseLinear
    x = '0 9'
    y = '0 0'
  [../]
  [./master_z]
    type = PiecewiseLinear
    x = '0 1  2 3 4   5  6    7  8   9'
    y = '0 0  0 0 0.5 0 -0.25 0 -0.5 0'
  [../]
[]

[AuxVariables]

  [./inc_slip_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./inc_slip_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./inc_slip_z]
    order = FIRST
    family = LAGRANGE
  [../]

[] # AuxVariables

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_z]
    type = PenetrationAux
    variable = inc_slip_z
    quantity = incremental_slip_z
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e7
  [../]
[]

[BCs]

  [./slave_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = slave_x
  [../]

  [./slave_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = slave_y
  [../]

  [./slave_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 4
    function = slave_z
  [../]


  [./master_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '1 2'
    function = master_x
  [../]

  [./master_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = '1 2'
    function = master_y
  [../]

  [./master_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = '1 2'
    function = master_z
  [../]

[] # BCs

[Materials]

  [./stiffStuff1]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
  [./stiffStuff2]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
[] # Materials

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu            superlu_dist'


  line_search = 'none'


  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 9
[] # Executioner

[Outputs]
  file_base = incremental_slip_out
  exodus = true
[] # Outputs

modules/porous_flow/test/tests/poro_elasticity/mandel_fully_saturated_volume.i

# Mandel's problem of consolodation of a drained medium
# Using the FullySaturatedDarcyBase and FullySaturatedFullySaturatedMassTimeDerivative kernels
# with multiply_by_density = false, so that this problem becomes linear
# Note the use of consistent_with_displaced_mesh = false in the calculation of volumetric strain
#
# A sample is in plane strain.
# -a <= x <= a
# -b <= y <= b
# It is squashed with constant force by impermeable, frictionless plattens on its top and bottom surfaces (at y=+/-b)
# Fluid is allowed to leak out from its sides (at x=+/-a)
# The porepressure within the sample is monitored.
#
# As is common in the literature, this is simulated by
# considering the quarter-sample, 0<=x<=a and 0<=y<=b, with
# impermeable, roller BCs at x=0 and y=0 and y=b.
# Porepressure is fixed at zero on x=a.
# Porepressure and displacement are initialised to zero.
# Then the top (y=b) is moved downwards with prescribed velocity,
# so that the total force that is inducing this downwards velocity
# is fixed.  The velocity is worked out by solving Mandel's problem
# analytically, and the total force is monitored in the simulation
# to check that it indeed remains constant.
#
# Here are the problem's parameters, and their values:
# Soil width.  a = 1
# Soil height.  b = 0.1
# Soil's Lame lambda.  la = 0.5
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = G = 0.75
# Soil bulk modulus.  K = la + 2*mu/3 = 1
# Drained Poisson ratio.  nu = (3K - 2G)/(6K + 2G) = 0.2
# Soil bulk compliance.  1/K = 1
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Biot modulus.  M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 4.705882
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.694118
# Undrained Poisson ratio.  nuu = (3Ku - 2G)/(6Ku + 2G) = 0.372627
# Skempton coefficient.  B = alpha*M/Ku = 1.048035
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Consolidation coefficient.  c = 2*k*B^2*G*(1-nu)*(1+nuu)^2/9/(1-nuu)/(nuu-nu) = 3.821656
# Normal stress on top.  F = 1
#
# The solution for porepressure and displacements is given in
# AHD Cheng and E Detournay "A direct boundary element method for plane strain poroelasticity" International Journal of Numerical and Analytical Methods in Geomechanics 12 (1988) 551-572.
# The solution involves complicated infinite series, so I shall not write it here

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 0.1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./roller_xmin]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left'
  [../]
  [./roller_ymin]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom'
  [../]
  [./plane_strain]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
  [./xmax_drained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = right
  [../]
  [./top_velocity]
    type = FunctionDirichletBC
    variable = disp_y
    function = top_velocity
    boundary = top
  [../]
[]

[Functions]
  [./top_velocity]
    type = PiecewiseLinear
    x = '0 0.002 0.006   0.014   0.03    0.046   0.062   0.078   0.094   0.11    0.126   0.142   0.158   0.174   0.19 0.206 0.222 0.238 0.254 0.27 0.286 0.302 0.318 0.334 0.35 0.366 0.382 0.398 0.414 0.43 0.446 0.462 0.478 0.494 0.51 0.526 0.542 0.558 0.574 0.59 0.606 0.622 0.638 0.654 0.67 0.686 0.702'
    y = '-0.041824842    -0.042730269    -0.043412712    -0.04428867     -0.045509181    -0.04645965     -0.047268246 -0.047974749      -0.048597109     -0.0491467  -0.049632388     -0.050061697      -0.050441198     -0.050776675     -0.051073238      -0.0513354 -0.051567152      -0.051772022     -0.051953128 -0.052113227 -0.052254754 -0.052379865 -0.052490464 -0.052588233 -0.052674662 -0.052751065 -0.052818606 -0.052878312 -0.052931093 -0.052977751 -0.053018997 -0.053055459 -0.053087691 -0.053116185 -0.053141373 -0.05316364 -0.053183324 -0.053200724 -0.053216106 -0.053229704 -0.053241725 -0.053252351 -0.053261745 -0.053270049 -0.053277389 -0.053283879 -0.053289615'
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_force]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./tot_force]
    type = ParsedAux
    args = 'stress_yy porepressure'
    execute_on = timestep_end
    variable = tot_force
    function = '-stress_yy+0.6*porepressure'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    component = 2
    variable = disp_z
  [../]
  [./mass0]
    type = PorousFlowFullySaturatedMassTimeDerivative
    biot_coefficient = 0.6
    multiply_by_density = false
    coupling_type = HydroMechanical
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowFullySaturatedDarcyBase
    multiply_by_density = false
    variable = porepressure
    gravity = '0 0 0'
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 8
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure_qp]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
    consistent_with_displaced_mesh = false
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # only the initial value of this is ever used
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.6
    solid_bulk_compliance = 1
    fluid_bulk_modulus = 8
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0.0 0 0'
    variable = porepressure
  [../]
  [./p1]
    type = PointValue
    outputs = csv
    point = '0.1 0 0'
    variable = porepressure
  [../]
  [./p2]
    type = PointValue
    outputs = csv
    point = '0.2 0 0'
    variable = porepressure
  [../]
  [./p3]
    type = PointValue
    outputs = csv
    point = '0.3 0 0'
    variable = porepressure
  [../]
  [./p4]
    type = PointValue
    outputs = csv
    point = '0.4 0 0'
    variable = porepressure
  [../]
  [./p5]
    type = PointValue
    outputs = csv
    point = '0.5 0 0'
    variable = porepressure
  [../]
  [./p6]
    type = PointValue
    outputs = csv
    point = '0.6 0 0'
    variable = porepressure
  [../]
  [./p7]
    type = PointValue
    outputs = csv
    point = '0.7 0 0'
    variable = porepressure
  [../]
  [./p8]
    type = PointValue
    outputs = csv
    point = '0.8 0 0'
    variable = porepressure
  [../]
  [./p9]
    type = PointValue
    outputs = csv
    point = '0.9 0 0'
    variable = porepressure
  [../]
  [./p99]
    type = PointValue
    outputs = csv
    point = '1 0 0'
    variable = porepressure
  [../]
  [./xdisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_x
  [../]
  [./ydisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_y
  [../]
  [./total_downwards_force]
     type = ElementAverageValue
     outputs = csv
     variable = tot_force
  [../]
  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.15*t<0.01,0.15*t,0.01)
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres asm lu 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 0.7
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.001
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mandel_fully_saturated_volume
  [./csv]
    interval = 3
    type = CSV
  [../]
[]

test/tests/outputs/intervals/intervals.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = Exodus
    interval = 5
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_3/ring3_template2.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring3_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'
#  petsc_options = '-mat_superlu_dist_iterrefine -mat_superlu_dist_replacetinypivot'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/phase_field/test/tests/CHSplitChemicalPotential/simple_transient_diffusion.i

# Same problem as in moose/test/tests/kernels/simple_transient_diffusion

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./c]
  [../]
  [./mu]
  [../]
[]

[Kernels]
  [./conc]
    type = CHSplitConcentration
    variable = c
    mobility = mobility_prop
    chemical_potential_var = mu
  [../]
  [./chempot]
    type = CHSplitChemicalPotential
    variable = mu
    chemical_potential_prop = mu_prop
    c = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./chemical_potential]
    type = DerivativeParsedMaterial
    f_name = mu_prop
    args = c
    function = 'c'
    derivative_order = 1
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    function = '0.1'
    args = c
    f_name = var_dep
    derivative_order = 1
  [../]
  [./mobility_tensor]
    type = ConstantAnisotropicMobility
    M_name = mobility_tensor
    tensor = '1 0 0 0 1 0 0 0 1'
  [../]
  [./mobility]
    type = CompositeMobilityTensor
    M_name = mobility_prop
    tensors = mobility_tensor
    weights = var_dep
    args = c
  [../]
[]

[BCs]
  [./leftc]
    type = DirichletBC
    variable = c
    boundary = left
    value = 0
  [../]
  [./rightc]
    type = DirichletBC
    variable = c
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  l_tol = 1e-3
  l_max_its = 20
  nl_max_its = 5
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_1/brick1_template1_sm.i

[Mesh]
  file = brick1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]


[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_x
  [../]
  [./disp_x13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_y
  [../]
  [./disp_y13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_x8 disp_x13 disp_x16 disp_y5 disp_y8 disp_y13 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/frictional_contact/single_point_2d/single_point_2d_tp.i

[Mesh]
  file = single_point_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./horizontal_movement]
    type = ParsedFunction
    value = t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    save_in = 'saved_x saved_y'
    diag_save_in = 'diag_saved_x diag_saved_y'
  [../]
[]

[AuxKernels]
  [./incslip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./incslip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./botx2]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./boty2]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = -0.005
  [../]
[]

[Materials]
  [./bottom]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1.0e9
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
  [./top]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu    superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 200
  dt = 0.001
  end_time = 0.01
  num_steps = 1000
  nl_rel_tol = 1e-08
  nl_abs_tol = 1e-08
  dtmin = 0.001
  l_tol = 1e-3
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = coulomb
    system = constraint
    friction_coefficient = '0.25'
    formulation = tangential_penalty
    penalty = 1e10
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    master = '2'
    slave = '3'
  [../]
[]

test/tests/outputs/checkpoint/checkpoint.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 11
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/phase_field/test/tests/actions/conserved_direct_1var_variable_mob.i

#
# Test consreved action for direct solve
#
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 16
  ny = 16
  xmax = 50
  ymax = 50
  elem_type = QUAD
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./cv]
        solve_type = direct
        free_energy = F
        kappa = 2.0
        mobility = M
      [../]
    [../]
  [../]
[]

[ICs]
  [./InitialCondition]
    type = CrossIC
    x1 = 5.0
    y1 = 5.0
    x2 = 45.0
    y2 = 45.0
    variable = cv
  [../]
[]

[Materials]
  [./variable_mob]
    type = DerivativeParsedMaterial
    f_name = M
    args = 'cv'
    function = '0.1 + (1 + cv)/2'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'cv'
    function = '(1-cv)^2 * (1+cv)^2'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm lu'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 10
  nl_rel_tol = 1.0e-10

  start_time = 0.0
  num_steps = 5
  dt = 0.5
[]

[Outputs]
  [./out]
    type = Exodus
    refinements = 2
  [../]
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/large_deform_harden3.i

# apply a number of "random" configurations and
# check that the algorithm returns to the yield surface
#
# must be careful here - we cannot put in arbitrary values of C_ijkl, otherwise the condition
# df/dsigma * C * flow_dirn < 0 for some stresses
# The important features that must be obeyed are:
# 0 = C_0222 = C_1222  (holds for transversely isotropic, for instance)
# C_0212 < C_0202 = C_1212 (holds for transversely isotropic)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  # the following are "random" deformations
  # each is O(1E-5) to keep deformations small
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = '(sin(0.1*t)+x)/1E1'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = '(cos(t)+x*y)/1E1'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 'sin(0.4321*t)*x*y*z/1E1'
  [../]
[]

[AuxVariables]
  [./wps_internal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./wps_internal_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = wps_internal
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./int]
    type = PointValue
    point = '0 0 0'
    variable = wps_internal
    outputs = 'console'
  [../]
  [./yield_fcn_at_zero]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'yield_fcn_at_zero'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1E3
    value_residual = 0
    rate = 0.01
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 0.577350269
    rate = 0.01
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.08748866
    value_residual = 0.03492077
    rate = 0.01
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 100
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    # the following is transversely isotropic, i think.
    fill_method = symmetric9
    C_ijkl = '3E9 1E9 3E9 3E9 3E9 6E9 1E9 1E9 9E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    max_NR_iterations = 1000
    ep_plastic_tolerance = 1E-3
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1E4
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = large_deform_harden3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_3/brick3_mu_0_2_pen_sm.i

[Mesh]
  file = brick3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
  [./tang_force_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_x
  [../]
  [./disp_x33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_x
  [../]
  [./disp_y28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_y
  [../]
  [./disp_y33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  file_base = brick3_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = brick3_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x28 disp_y28 disp_x33 disp_y33 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+6
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cwp10.i

# Capped weak-plane plasticity
# checking jacobian for shear failure with hardening
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 2
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 3
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 100
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 2  0 0 -1  2 -1 0.1'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 0
    smoothing_tol = 2
    yield_function_tol = 1E-10
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/external_petsc_solver/test/tests/external_petsc_problem/petsc_problem_transient.i

[Mesh]
  # It is a mirror of PETSc mesh (DMDA)
  type = PETScDMDAMesh
[]

[AuxVariables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Problem]
  type = ExternalPETScProblem
  sync_variable = u
[]

[Executioner]
  type = Transient
[]

[AuxVariables]
  [pid]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[AuxKernels]
  [pid_aux]
    type = ProcessorIDAux
    variable = pid
    execute_on = 'INITIAL'
  []
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/cavity_pressure/rz.i

#
# Cavity Pressure Test
#
# This test is designed to compute an internal pressure based on
#   p = n * R * T / V
# where
#   p is the pressure
#   n is the amount of material in the volume (moles)
#   R is the universal gas constant
#   T is the temperature
#   V is the volume
#
# The mesh is composed of one block (2) with an interior cavity of volume 8.
#   Block 1 sits in the cavity and has a volume of 1.  Thus, the total
#   initial volume is 7.
# The test adjusts T in the following way:
#   T => T0 + beta * t
# with
#   beta = T0
#   T0 = 240.54443866068704
#   V0 = 7
#   n0 = f(p0)
#   p0 = 100
#   R = 8.314472 J * K^(-1) * mol^(-1)
#
# So, n0 = p0 * V0 / R / T0 = 100 * 7 / 8.314472 / 240.544439
#        = 0.35
#
# At t = 1, p = 200.

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Mesh]
  file = rz.e
[]

[Functions]
  [./temperature]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 2'
    scale_factor = 240.54443866068704
  [../]
[]

[Variables]
  [./disp_r]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 240.54443866068704
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
  [./heat]
    type = Diffusion
    variable = temp
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_r
    boundary = '1 2'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_z
    boundary = '1 2'
    value = 0.0
  [../]
  [./temperatureInterior]
    type = FunctionDirichletBC
    boundary = 2
    function = temperature
    variable = temp
  [../]
  [./CavityPressure]
    [./1]
      boundary = 2
      initial_pressure = 100
      R = 8.314472
      temperature = aveTempInterior
      volume = internalVolume
      startup_time = 0.5
      output = ppress
    [../]
  [../]
[]

[Materials]
  [./elastic_tensor1]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = 1
  [../]
  [./strain1]
    type = ComputeAxisymmetricRZFiniteStrain
    block = 1
  [../]
  [./stress1]
    type = ComputeFiniteStrainElasticStress
    block = 1
  [../]
  [./elastic_tensor2]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = 2
  [../]
  [./strain2]
    type = ComputeAxisymmetricRZFiniteStrain
    block = 2
  [../]
  [./stress2]
    type = ComputeFiniteStrainElasticStress
    block = 2
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  nl_abs_tol = 1e-10

  l_max_its = 20

  dt = 0.5
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 2
    execute_on = 'initial linear'
  [../]
  [./aveTempInterior]
    type = SideAverageValue
    boundary = 2
    variable = temp
    execute_on = 'initial linear'
  [../]
[]

[Outputs]
  exodus = true
  [./checkpoint]
    type = Checkpoint
    num_files = 1
  [../]
[]

modules/tensor_mechanics/test/tests/thermal_expansion_function/dilatation.i

# This test checks the thermal expansion calculated via an dilatation function.
# The coefficient is selected so as to result in a 1e-4 strain in the x-axis, and to cross over
# from positive to negative strain.

[Mesh]
  [./gen]
    type = GeneratedMeshGenerator
    dim = 3
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    function = '1 + t'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeDilatationThermalExpansionFunctionEigenstrain
    dilatation_function = cte_dilatation
    stress_free_temperature = 1.5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_dilatation]
    type = PiecewiseLinear
    x = '1 2'
    y = '-1e-4 1e-4'
  [../]
[]

[Postprocessors]
  [./disp_x_max]
    type = SideAverageValue
    variable = disp_x
    boundary = right
  [../]
  [./temp_avg]
    type = ElementAverageValue
    variable = temp
  [../]
[]

[Executioner]
  type = Transient

  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

modules/phase_field/test/tests/rigidbodymotion/grain_forcesum.i

# test file for showing summing forces and torques obtained from other userobjects
[GlobalParams]
  var_name_base = eta
  op_num = 2
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 3
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SpecifiedSmoothCircleIC
      invalue = 1.0
      outvalue = 0.1
      int_width = 6.0
      x_positions = '20.0 30.0 '
      z_positions = '0.0 0.0 '
      y_positions = '0.0 25.0 '
      radii = '14.0 14.0'
      3D_spheres = false
      variable = c
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '5.0  2.0      0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = c
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
    derivative_order = 2
  [../]
  [./force_density]
    type = ForceDensityMaterial
    c = c
    etas ='eta0 eta1'
  [../]
[]

[AuxVariables]
  [./eta0]
  [../]
  [./eta1]
  [../]
  [./bnds]
  [../]
  [./df00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df01]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df10]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df11]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[ICs]
  [./ic_eta0]
    int_width = 6.0
    x1 = 20.0
    y1 = 0.0
    radius = 14.0
    outvalue = 0.0
    variable = eta0
    invalue = 1.0
    type = SmoothCircleIC
  [../]
  [./IC_eta1]
    int_width = 6.0
    x1 = 30.0
    y1 = 25.0
    radius = 14.0
    outvalue = 0.0
    variable = eta1
    invalue = 1.0
    type = SmoothCircleIC
  [../]
[]

[VectorPostprocessors]
  [./forces_dns]
    type = GrainForcesPostprocessor
    grain_force = grain_force_dns
  [../]
  [./forces_cosnt]
    type = GrainForcesPostprocessor
    grain_force = grain_force_const
  [../]
  [./forces_total]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force_dns]
    type = ComputeGrainForceAndTorque
    c = c
    etas = 'eta0 eta1'
    execute_on = 'linear nonlinear'
    grain_data = grain_center
    force_density = force_density
  [../]
  [./grain_force_const]
    type = ConstantGrainForceAndTorque
    execute_on = 'linear nonlinear'
    force =  '2.0 0.0 0.0 0.0 0.0 0.0'
    torque = '0.0 0.0 0.0 0.0 0.0 0.0'
  [../]
  [./grain_force]
    type = GrainForceAndTorqueSum
    execute_on = 'linear nonlinear'
    grain_forces = 'grain_force_dns grain_force_const'
    grain_num = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  l_max_its = 20
  nl_max_its = 20
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 2
  dt = 0.1
[]

[Outputs]
  exodus = true
  csv = true
[]

test/tests/postprocessors/function_value_pps/function_value_pps.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
[]

[AuxVariables]
  [./v]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./constant_func]
    type = ConstantFunction
    value = 2.798
  [../]
[]


[ICs]
  [./u_ic]
    type = ConstantIC
    variable = u
    value = 2
  [../]
[]

[AuxKernels]
  [./one]
    type = ConstantAux
    variable = v
    value = 1
    execute_on = 'initial timestep_end'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./value1]
    type = FunctionValuePostprocessor
    function = constant_func
    execute_on = 'initial timestep_end'
  [../]
  [./value2]
    type = FunctionValuePostprocessor
    function = 2*t
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
[]

[Outputs]
  csv = true
[]

[Problem]
  solve = false
[]

modules/tensor_mechanics/test/tests/tensile/small_deform8_update_version.i

# A single unit element is stretched by 1E-6m in z direction.
# with Lame lambda = 0.6E6 and Lame mu (shear) = 1E6
# stress_zz = 2.6 Pa
# stress_xx = 0.6 Pa
# stress_yy = 0.6 Pa
# tensile_strength is set to 0.5Pa
#
# stress_zz = 0.5
# plastic multiplier = 2.1/2.6 E-6
# stress_xx = 0.6 - (2.1/2.6*0.6) = 0.115
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.0E-6*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0.6E6 1E6'
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.0
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform8_update_version
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/time_integrators/crank-nicolson/cranic.i

#
# Testing a solution that is second order in space and second order in time
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD9
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*((x*x)+(y*y))-(4*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'crank-nicolson'

  start_time = 0.0
  num_steps = 5
  dt = 0.25

#  [./Adaptivity]
#    refine_fraction = 0.2
#    coarsen_fraction = 0.3
#    max_h_level = 4
#  [../]
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/interaction_integral/interaction_integral_2d.i

#This tests the J-Integral evaluation capability.
#This is a 2d plane strain model
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = crack2d.e
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = interaction_integral_2d_out
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/actions/both_split_2vars.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 28
  ny = 20
  xmin = 10
  xmax = 40
  ymin = 15
  ymax = 35
  elem_type = QUAD
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./c]
        free_energy = F
        mobility = 1.0
        kappa = 20.0
        args = 'eta'
        solve_type = REVERSE_SPLIT
      [../]
    [../]
    [./Nonconserved]
      [./eta]
        free_energy = F
        mobility = 1.0
        kappa = 20
        args = 'c'
      [../]
    [../]
  [../]
[]

[ICs]
  [./c_IC]
    type = BoundingBoxIC
    variable = c
    x1 = 10
    x2 = 25
    y1 = 15
    y2 = 35
    inside = 0.15
    outside = 0.85
  [../]
  [./eta_IC]
    type = ConstantIC
    variable = eta
    value = 0.5
  [../]
[]

[Materials]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta c'
    function = '(1 - eta)*10.0*(c - 0.1)^2 + eta*(8.0*(c - 0.9)^2) + 10.0*eta^2*(1-eta)^2'
    outputs = exodus
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm lu'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 10
  dt = 0.05
[]

[Outputs]
  perf_graph = true
  exodus = true
[]

modules/xfem/test/tests/moment_fitting/diffusion_moment_fitting_four_points.i

# Test for a diffusion problem which uses four points moment_fitting approach.
# See this paper (https://doi.org/10.1007/s00466-018-1544-2) for more details about moment_fitting approach.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 6
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  geometric_cut_userobjects = 'line_seg_cut_uo'
  qrule = moment_fitting
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 3
    function = u_left
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d.i

# Pressure pulse in 1D with 1 phase - transient
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 2E6
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = pp
    gravity = '0 0 0'
    fluid_component = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pp
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-20 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[Postprocessors]
  [./p000]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p010]
    type = PointValue
    variable = pp
    point = '10 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p020]
    type = PointValue
    variable = pp
    point = '20 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p030]
    type = PointValue
    variable = pp
    point = '30 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p040]
    type = PointValue
    variable = pp
    point = '40 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p050]
    type = PointValue
    variable = pp
    point = '50 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p060]
    type = PointValue
    variable = pp
    point = '60 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p070]
    type = PointValue
    variable = pp
    point = '70 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p080]
    type = PointValue
    variable = pp
    point = '80 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p090]
    type = PointValue
    variable = pp
    point = '90 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p100]
    type = PointValue
    variable = pp
    point = '100 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  file_base = pressure_pulse_1d
  print_linear_residuals = false
  csv = true
[]

modules/peridynamics/test/tests/plane_stress/weak_planestress_NOSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  out_of_plane_strain = strain_zz
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 8
    ny = 8
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./strain_zz]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1003
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1001
    value = 0.001
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
  [../]
[]

[Kernels]
  [./strain_zz]
    type = WeakPlaneStressNOSPD
    variable = strain_zz
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e8
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputePlaneSmallStrainNOSPD
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none

  nl_rel_tol = 1e-12

  start_time = 0
  end_time = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

[Outputs]
  file_base = weak_planestress_NOSPD
  exodus = true
[]

test/tests/transfers/multiapp_vector_pp_transfer/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 1
  ymax = 2
[]

[Problem]
  kernel_coverage_check = false
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
    [./InitialCondition]
      type = FunctionIC
      function = set_v
    [../]
  [../]
[]

[Functions]
  [./set_v]
    type = ParsedFunction
    value = 'x + 2 * y'
  [../]
[]

[VectorPostprocessors]
  [./sample_points]
    type = PointValueSampler
    variable = v
    points = '0.25 1.25 0 0.5 1.5 0'
    sort_by = x
    execute_on = 'initial timestep_end'
  [../]

  [./receive_values]
    type = PointValueSampler
    variable = v
    points = '0.25 1.25 0 0.5 1.5 0'
    sort_by = x
    execute_on = initial
  [../]
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    input_files = 'sub.i'
    positions = '0.25 1.25 0 0.5 1.5 0'
    max_procs_per_app = 1
  [../]
[]

[Transfers]
  [./send]
    type = MultiAppVectorPostprocessorTransfer
    vector_postprocessor = sample_points
    postprocessor = receive
    vector_name = v
    direction = to_multiapp
    multi_app = sub
  [../]

  [./receive]
    type = MultiAppVectorPostprocessorTransfer
    vector_postprocessor = receive_values
    postprocessor = send
    vector_name = v
    direction = from_multiapp
    multi_app = sub
  [../]
[]

[Executioner]
  type = Transient
  nl_abs_tol = 1e-10
  num_steps = 1
[]

[Outputs]
  csv = true
[]

modules/peridynamics/test/tests/generalized_plane_strain/out_of_plane_pressure_OSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  scalar_out_of_plane_strain = scalar_strain_zz
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules]
  [./Peridynamics/Mechanics]
    [./Master]
      [./all]
        formulation = ORDINARY_STATE
      [../]
    [../]
    [./GeneralizedPlaneStrain]
      [./all]
        formulation = ORDINARY_STATE
        out_of_plane_stress_variable = stress_zz
        out_of_plane_pressure = pressure_function
        factor = 1e5
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = NodalRankTwoPD
    variable = stress_zz
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    rank_two_tensor = stress
    output_type = component
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./react_z]
    type = NodalVariableIntegralPD
    variable = stress_zz
  [../]
[]

[Functions]
  [./pressure_function]
    type = PiecewiseLinear
    x = '0  1'
    y = '0  1'
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    boundary = 1003
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 1000
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialOSPD
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  file_base = out_of_plane_pressure_OSPD
[]

modules/solid_mechanics/test/tests/LSH_smallstrain/LSH_smallstrain_rz_test.i

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = LSH_rz.e
[]

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t*(1.0/5.0)
  [../]
[]

[SolidMechanics]

  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]

[]


[AuxKernels]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]

  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]

  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]

 []


[BCs]

  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

[]

[Materials]
  [./LSHRZ]
    type = LinearStrainHardening
    block = 1
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
    yield_stress = 2.4e2
    hardening_constant = 1206
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Executioner]
  type = Transient

  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
  start_time = 0.0
#  end_time = 1.0
  end_time = 0.0105
#  num_steps = 100
  dt = 1.e-3
[]

[Outputs]
  file_base = out_rz
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/combined/test/tests/ACGrGrElasticDrivingForce/bicrystal.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 3
  xmax = 1000
  ymax = 1000
  elem_type = QUAD4
  uniform_refine = 2
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalBoundingBoxIC]
      x1 = 0
      y1 = 0
      x2 = 500
      y2 = 1000
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./elastic_strain11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain12]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./C1111]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./active_bounds_elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./euler_angle]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
  [./PolycrystalElasticDrivingForce]
  [../]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
  [../]
[]

[AuxKernels]
  [./bnds_aux]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
  [./elastic_strain11]
    type = RankTwoAux
    variable = elastic_strain11
    rank_two_tensor = elastic_strain
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./elastic_strain22]
    type = RankTwoAux
    variable = elastic_strain22
    rank_two_tensor = elastic_strain
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./elastic_strain12]
    type = RankTwoAux
    variable = elastic_strain12
    rank_two_tensor = elastic_strain
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    execute_on = 'initial timestep_begin'
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    execute_on = 'initial timestep_begin'
    field_display = VARIABLE_COLORING
  [../]
  [./C1111]
    type = RankFourAux
    variable = C1111
    rank_four_tensor = elasticity_tensor
    index_l = 0
    index_j = 0
    index_k = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./active_bounds_elemental]
    type = FeatureFloodCountAux
    variable = active_bounds_elemental
    field_display = ACTIVE_BOUNDS
    execute_on = 'initial timestep_begin'
    flood_counter = grain_tracker
  [../]
  [./euler_angle]
    type = OutputEulerAngles
    variable = euler_angle
    euler_angle_provider = euler_angle_file
    grain_tracker = grain_tracker
    output_euler_angle = 'phi1'
  [../]
[]

[BCs]
  [./top_displacement]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = -10.0
  [../]
  [./x_anchor]
    type = DirichletBC
    variable = disp_x
    boundary = 'left right'
    value = 0.0
  [../]
  [./y_anchor]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    block = 0
    T = 500 # K
    wGB = 75 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
    time_scale = 1.0e-6
  [../]
  [./ElasticityTensor]
    type = ComputePolycrystalElasticityTensor
    grain_tracker = grain_tracker
  [../]
  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]
[]

[UserObjects]
  [./euler_angle_file]
    type = EulerAngleFileReader
    file_name = test.tex
  [../]
  [./grain_tracker]
    type = GrainTrackerElasticity
    connecting_threshold = 0.05
    compute_var_to_feature_map = true
    flood_entity_type = elemental
    execute_on = 'initial timestep_begin'

    euler_angle_provider = euler_angle_file
    fill_method = symmetric9
    C_ijkl = '1.27e5 0.708e5 0.708e5 1.27e5 0.708e5 1.27e5 0.7355e5 0.7355e5 0.7355e5'

    outputs = none
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
  [./gr0_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr0
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   coupled_groups = 'gr0,gr1 disp_x,disp_y'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -pc_hypre_boomeramg_strong_threshold'
  petsc_options_value = 'hypre boomeramg 31 0.7'

  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 30
  nl_rel_tol = 1e-9

  start_time = 0.0
  num_steps = 3
  dt = 0.2

  [./Adaptivity]
   initial_adaptivity = 2
    refine_fraction = 0.7
    coarsen_fraction = 0.1
    max_h_level = 2
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform21.i

# Mohr-Coulomb only
# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 6
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 1E-12
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./mc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    smoothing_tol = 1
    yield_function_tol = 1.0E-9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform21
  csv = true
[]

modules/phase_field/test/tests/initial_conditions/BimodalSuperellipsoidsIC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c]
    type = BimodalSuperellipsoidsIC
    variable = c
    x_positions = '10.0 40.0'
    y_positions = '25.0 25.0'
    z_positions = '0.0  0.0'
    as = '8.0 8.0'
    bs = '8.0 8.0'
    cs = '1 1'
    ns = '3.5 3.5'
    npart = 5
    invalue = 1.0
    outvalue = -0.8
    int_width = 4.0
    large_spac = 5
    small_spac = 2
    small_a = 5
    small_b = 5
    small_c = 5
    small_n = 2
    size_variation_type = normal
    size_variation = 0.5
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 20
  l_tol = 1.0e-4
  nl_max_its = 40
  nl_rel_tol = 1e-9

  start_time = 0.0
  num_steps = 1
  dt = 2.0
[]

[Outputs]
  exodus = false
  [./out]
    type = Exodus
    refinements = 2
  [../]
[]

test/tests/geomsearch/patch_update_strategy/never.i

[Mesh]
  type = FileMesh
  file = long_range.e
  dim = 2
  patch_update_strategy = never
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./u]
    block = right
  [../]
[]

[AuxVariables]
  [./linear_field]
  [../]
  [./receiver]
    # The field to transfer into
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./elemental_reciever]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./linear_in_y]
    # This just gives us something to transfer that varies in y so we can ensure the transfer is working properly...
    type = FunctionAux
    variable = linear_field
    function = y
    execute_on = initial
  [../]
  [./right_to_left]
    type = GapValueAux
    variable = receiver
    paired_variable = linear_field
    paired_boundary = rightleft
    execute_on = timestep_end
    boundary = leftright
  [../]
  [./y_displacement]
    type = FunctionAux
    variable = disp_y
    function = t
    execute_on = 'linear timestep_begin'
    block = left
  [../]
  [./elemental_right_to_left]
    type = GapValueAux
    variable = elemental_reciever
    paired_variable = linear_field
    paired_boundary = rightleft
    boundary = leftright
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = righttop
    value = 1
  [../]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = rightbottom
    value = 0
  [../]
[]

[Problem]
  type = FEProblem
  kernel_coverage_check = false
[]

[Executioner]
  type = Transient
  num_steps = 30
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/nodal_area/nodal_area_Hex27_sm.i

[Mesh]
  file = nodal_area_Hex27.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'displ_x displ_y displ_z'
[]

[Functions]
  [./disp]
    type = PiecewiseLinear
    x = '0     1'
    y = '0  20e-6'
  [../]
[]

[Variables]
  [./displ_x]
  [../]
  [./displ_y]
  [../]
  [./displ_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./react_x]
  [../]
  [./react_y]
  [../]
  [./react_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = displ_x
    disp_y = displ_y
    disp_z = displ_z
    save_in_disp_x = react_x
    save_in_disp_y = react_y
    save_in_disp_z = react_z
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
[]

[BCs]
  [./move_right]
    type = FunctionDirichletBC
    boundary = '1'
    variable = displ_x
    function = disp
  [../]

  [./fixed_x]
    type = DirichletBC
    boundary = '3 4'
    variable = displ_x
    value = 0
  [../]

  [./fixed_y]
    type = DirichletBC
    boundary = 10
    variable = displ_y
    value = 0
  [../]

  [./fixed_z]
    type = DirichletBC
    boundary = 11
    variable = displ_z
    value = 0
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e8
    tangential_tolerance = 1e-4
    system = Constraint
  [../]
[]

[Materials]
  [./dummy]
    type = Elastic
    block = '1 2'

    disp_x = displ_x
    disp_y = displ_y
    disp_z = displ_z

    youngs_modulus = 1e6
    poissons_ratio = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  #petsc_options_iname = '-snes_type -snes_ls -snes_linesearch_type -ksp_gmres_restart -pc_type'
  #petsc_options_value = 'ls         basic    basic                    201                lu'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6

  l_tol = 1e-4
  l_max_its = 40

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
  num_steps = 100

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./react_x]
    type = NodalSum
    variable = react_x
    boundary = 1
  [../]
  [./total_area]
    type = NodalSum
    variable = nodal_area_dummy_name
    boundary = 2
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/flux_limited_TVD_pflow/pffltvd_2D_trimesh.i

# Using flux-limited TVD advection ala Kuzmin and Turek, mploying PorousFlow Kernels and UserObjects, with superbee flux-limiter
# 2D version
[Mesh]
  type = FileMesh
  file = trimesh.msh
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
  block = '50'
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '1 - x'
  [../]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.305,0,1))'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = tracer
  [../]
  [./flux0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = advective_flux_calculator_0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = porepressure
  [../]
  [./flux1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = porepressure
    advective_flux_calculator = advective_flux_calculator_1
  [../]
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1
    boundary = left
  [../]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_component_1]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 1
    use_mobility = true
    flux_function = 1E3
  [../]
  [./remove_component_0]
    type = PorousFlowPiecewiseLinearSink
    variable = tracer
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 0
    use_mobility = true
    flux_function = 1E3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      thermal_expansion = 0
      viscosity = 1.0
      density0 = 1000.0
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure tracer'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
  [./advective_flux_calculator_0]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 0
  [../]
  [./advective_flux_calculator_1]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = tracer
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = the_simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-2 0 0   0 1E-2 0   0 0 1E-2'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0.04 0'
    num_points = 101
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  nl_abs_tol = 1E-8
  timestep_tolerance = 1E-3
[]

[Outputs]
  print_linear_residuals = false
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/auxkernels/solution_aux/solution_aux_exodus_direct.i

[Mesh]
  type = FileMesh
  file = cubesource.e
  # The SolutionUserObject uses the copy_nodal_solution() capability
  # of the Exodus reader, and therefore won't work if the initial mesh
  # has been renumbered (it will be reunumbered if you are running with
  # DistributedMesh in parallel).  Hence, we restrict this test to run with
  # ReplicatedMesh only.
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./nn]
    type = SolutionAux
    solution = soln
    variable = nn
    scale_factor = 2.0
    direct = true
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = cubesource.e
    system_variables = source_nodal
    timestep = 2
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'
  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 50
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/multiapps/check_error/sub1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_thermal_expansion_function/finite_linear.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function is a linear function
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# This version of the test uses finite deformation theory.
# The two models produce very similar results.  There are slight
# differences due to the large deformation treatment.

[Mesh]
  file = 'blocks.e'
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
    use_automatic_differentiation = true
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain1]
    type = ADComputeMeanThermalExpansionFunctionEigenstrain
    block = 1
    thermal_expansion_function = cte_func_mean
    thermal_expansion_function_reference_temperature = 0.5
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
  [./thermal_expansion_strain2]
    type = ADComputeInstantaneousThermalExpansionFunctionEigenstrain
    block = 2
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (0.5 * t^2 - 0.5 * tsf^2) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 0.0
               2 2.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = NEWTON
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/fromsub_fixed_meshes_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_sub]
  [../]
  [./elemental_from_sub]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0.1 0.45 0'
    input_files = fromsub_fixed_meshes_sub.i
  [../]
[]

[Transfers]
  # Note: it's not generally advised to use "fixed_meshes = true" with displaced
  # meshes.  We only do that for this test to make sure the test will fail if
  # "fixed_meshes" isn't working properly.
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = from_sub
    fixed_meshes = true
    displaced_source_mesh = true
  [../]
  [./elemental_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = elemental_from_sub
    fixed_meshes = true
    displaced_source_mesh = true
  [../]
[]

modules/porous_flow/test/tests/fluidstate/waterncg.i

# Tests correct calculation of properties in PorousFlowWaterNCG.
# This test is run three times, with the initial condition of z (the total mass
# fraction of NCG in all phases) varied to give either a single phase liquid, a
# single phase gas, or two phases.

[Mesh]
  [./mesh]
    type = GeneratedMeshGenerator
    dim = 2
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pgas]
    initial_condition = 1e6
  [../]
  [./z]
     initial_condition = 0.005
  [../]
[]

[AuxVariables]
  [./pressure_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./internal_energy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./internal_energy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./pressure_water]
    type = PorousFlowPropertyAux
    variable = pressure_water
    property = pressure
    phase = 0
    execute_on = timestep_end
  [../]
  [./pressure_gas]
    type = PorousFlowPropertyAux
    variable = pressure_gas
    property = pressure
    phase = 1
    execute_on = timestep_end
  [../]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation_water
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./density_water]
    type = PorousFlowPropertyAux
    variable = density_water
    property = density
    phase = 0
    execute_on = timestep_end
  [../]
  [./density_gas]
    type = PorousFlowPropertyAux
    variable = density_gas
    property = density
    phase = 1
    execute_on = timestep_end
  [../]
  [./viscosity_water]
    type = PorousFlowPropertyAux
    variable = viscosity_water
    property = viscosity
    phase = 0
    execute_on = timestep_end
  [../]
  [./viscosity_gas]
    type = PorousFlowPropertyAux
    variable = viscosity_gas
    property = viscosity
    phase = 1
    execute_on = timestep_end
  [../]
  [./enthalpy_water]
    type = PorousFlowPropertyAux
    variable = enthalpy_water
    property = enthalpy
    phase = 0
    execute_on = timestep_end
  [../]
  [./enthalpy_gas]
    type = PorousFlowPropertyAux
    variable = enthalpy_gas
    property = enthalpy
    phase = 1
    execute_on = timestep_end
  [../]
  [./internal_energy_water]
    type = PorousFlowPropertyAux
    variable = internal_energy_water
    property = internal_energy
    phase = 0
    execute_on = timestep_end
  [../]
  [./internal_energy_gas]
    type = PorousFlowPropertyAux
    variable = internal_energy_gas
    property = internal_energy
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1_water]
    type = PorousFlowPropertyAux
    variable = x1_water
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./x1_gas]
    type = PorousFlowPropertyAux
    variable = x1_gas
    property = mass_fraction
    phase = 1
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./x0_water]
    type = PorousFlowPropertyAux
    variable = x0_water
    property = mass_fraction
    phase = 0
    fluid_component = 0
    execute_on = timestep_end
  [../]
  [./x0_gas]
    type = PorousFlowPropertyAux
    variable = x0_gas
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = timestep_end
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowWaterNCG
    water_fp = water
    gas_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./density_water]
    type = ElementIntegralVariablePostprocessor
    variable = density_water
  [../]
  [./density_gas]
    type = ElementIntegralVariablePostprocessor
    variable = density_gas
  [../]
  [./viscosity_water]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_water
  [../]
  [./viscosity_gas]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_gas
  [../]
  [./enthalpy_water]
    type = ElementIntegralVariablePostprocessor
    variable = enthalpy_water
  [../]
  [./enthalpy_gas]
    type = ElementIntegralVariablePostprocessor
    variable = enthalpy_gas
  [../]
  [./internal_energy_water]
    type = ElementIntegralVariablePostprocessor
    variable = internal_energy_water
  [../]
  [./internal_energy_gas]
    type = ElementIntegralVariablePostprocessor
    variable = internal_energy_gas
  [../]
  [./x1_water]
    type = ElementIntegralVariablePostprocessor
    variable = x1_water
  [../]
  [./x0_water]
    type = ElementIntegralVariablePostprocessor
    variable = x0_water
  [../]
  [./x1_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x1_gas
  [../]
  [./x0_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x0_gas
  [../]
  [./sg]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_gas
  [../]
  [./sw]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_water
  [../]
  [./pwater]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_water
  [../]
  [./pgas]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_gas
  [../]
  [./x0mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    phase = '0 1'
  [../]
  [./x1mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = '0 1'
  [../]
[]

[Outputs]
  exodus = true
  file_base = waterncg_liquid
[]

test/tests/multiapps/restart/sub2.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 10
[]

[Functions]
  [./u_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./fn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = u_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/examples/tutorial/11_2D.i

# Two-phase borehole injection problem in RZ coordinates
[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    xmin = 1.0
    xmax = 10
    bias_x = 1.4
    ny = 3
    ymin = -6
    ymax = 6
  []
  [./aquifer]
    input = gen
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 -2 0'
    top_right = '10 2 0'
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x<1.0001'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[Problem]
  coord_type = RZ
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pwater pgas T disp_r'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1E-6
    m = 0.6
  [../]
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
  gravity = '0 0 0'
  biot_coefficient = 1.0
  PorousFlowDictator = dictator
[]

[Variables]
  [./pwater]
    initial_condition = 20E6
  [../]
  [./pgas]
    initial_condition = 20.1E6
  [../]
  [./T]
    initial_condition = 330
    scaling = 1E-5
  [../]
  [./disp_r]
    scaling = 1E-5
  [../]
[]

[Kernels]
  [./mass_water_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    use_displaced_mesh = false
    variable = pwater
  [../]
  [./flux_water]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    use_displaced_mesh = false
    variable = pwater
  [../]
  [./vol_strain_rate_water]
    type = PorousFlowMassVolumetricExpansion
    fluid_component = 0
    use_displaced_mesh = false
    variable = pwater
  [../]
  [./mass_co2_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    use_displaced_mesh = false
    variable = pgas
  [../]
  [./flux_co2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    use_displaced_mesh = false
    variable = pgas
  [../]
  [./vol_strain_rate_co2]
    type = PorousFlowMassVolumetricExpansion
    fluid_component = 1
    use_displaced_mesh = false
    variable = pgas
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    use_displaced_mesh = false
    variable = T
  [../]
  [./advection]
    type = PorousFlowHeatAdvection
    use_displaced_mesh = false
    variable = T
  [../]
  [./conduction]
    type = PorousFlowHeatConduction
    use_displaced_mesh = false
    variable = T
  [../]
  [./vol_strain_rate_heat]
    type = PorousFlowHeatVolumetricExpansion
    use_displaced_mesh = false
    variable = T
  [../]
  [./grad_stress_r]
    type = StressDivergenceRZTensors
    temperature = T
    variable = disp_r
    thermal_eigenstrain_name = thermal_contribution
    use_displaced_mesh = false
    component = 0
  [../]
  [./poro_r]
    type = PorousFlowEffectiveStressCoupling
    variable = disp_r
    use_displaced_mesh = false
    component = 0
  [../]
[]

[AuxVariables]
  [./disp_z]
  [../]
  [./effective_fluid_pressure]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./mass_frac_phase0_species0]
    initial_condition = 1 # all water in phase=0
  [../]
  [./mass_frac_phase1_species0]
    initial_condition = 0 # no water in phase=1
  [../]
  [./sgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./swater]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_rr]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_tt]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./porosity]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./effective_fluid_pressure]
    type = ParsedAux
    args = 'pwater pgas swater sgas'
    function = 'pwater * swater + pgas * sgas'
    variable = effective_fluid_pressure
  [../]
  [./swater]
    type = PorousFlowPropertyAux
    variable = swater
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./sgas]
    type = PorousFlowPropertyAux
    variable = sgas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./stress_rr_aux]
    type = RankTwoAux
    variable = stress_rr
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./stress_tt]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_tt
    index_i = 2
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 1
    index_j = 1
  [../]
  [./porosity]
    type = PorousFlowPropertyAux
    variable = porosity
    property = porosity
    execute_on = timestep_end
  [../]
[]


[BCs]
  [./pinned_top_bottom_r]
    type = DirichletBC
    variable = disp_r
    value = 0
    boundary = 'top bottom'
  [../]
  [./cavity_pressure_r]
    type = Pressure
    boundary = injection_area
    variable = disp_r
    component = 0
    postprocessor = constrained_effective_fluid_pressure_at_wellbore
    use_displaced_mesh = false
  [../]

  [./cold_co2]
    type = DirichletBC
    boundary = injection_area
    variable = T
    value = 290  # injection temperature
    use_displaced_mesh = false
  [../]
  [./constant_co2_injection]
    type = PorousFlowSink
    boundary = injection_area
    variable = pgas
    fluid_phase = 1
    flux_function = -1E-4
    use_displaced_mesh = false
  [../]

  [./outer_water_removal]
    type = PorousFlowPiecewiseLinearSink
    boundary = right
    variable = pwater
    fluid_phase = 0
    pt_vals = '0 1E9'
    multipliers = '0 1E8'
    PT_shift = 20E6
    use_mobility = true
    use_relperm = true
    use_displaced_mesh = false
  [../]
  [./outer_co2_removal]
    type = PorousFlowPiecewiseLinearSink
    boundary = right
    variable = pgas
    fluid_phase = 1
    pt_vals = '0 1E9'
    multipliers = '0 1E8'
    PT_shift = 20.1E6
    use_mobility = true
    use_relperm = true
    use_displaced_mesh = false
  [../]
[]

[Modules]
  [./FluidProperties]
    [./true_water]
      type = Water97FluidProperties
    [../]
    [./tabulated_water]
      type = TabulatedFluidProperties
      fp = true_water
      temperature_min = 275
      pressure_max = 1E8
      fluid_property_file = water97_tabulated_11.csv
    [../]
    [./true_co2]
      type = CO2FluidProperties
    [../]
    [./tabulated_co2]
      type = TabulatedFluidProperties
      fp = true_co2
      temperature_min = 275
      pressure_max = 1E8
      fluid_property_file = co2_tabulated_11.csv
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = T
  [../]
  [./saturation_calculator]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = pgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'mass_frac_phase0_species0 mass_frac_phase1_species0'
  [../]
  [./water]
    type = PorousFlowSingleComponentFluid
    fp = tabulated_water
    phase = 0
  [../]
  [./co2]
    type = PorousFlowSingleComponentFluid
    fp = tabulated_co2
    phase = 1
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 4
    s_res = 0.1
    sum_s_res = 0.2
    phase = 0
  [../]
  [./relperm_co2]
    type = PorousFlowRelativePermeabilityBC
    nw_phase = true
    lambda = 2
    s_res = 0.1
    sum_s_res = 0.2
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    thermal = true
    porosity_zero = 0.1
    reference_temperature = 330
    reference_porepressure = 20E6
    thermal_expansion_coeff = 15E-6 # volumetric
    solid_bulk = 8E9 # unimportant since biot = 1
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityKozenyCarman
    block = aquifer
    poroperm_function = kozeny_carman_phi0
    phi0 = 0.1
    n = 2
    m = 2
    k0 = 1E-12
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityKozenyCarman
    block = caps
    poroperm_function = kozeny_carman_phi0
    phi0 = 0.1
    n = 2
    m = 2
    k0 = 1E-15
    k_anisotropy = '1 0 0  0 1 0  0 0 0.1'
  [../]
  [./rock_thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '2 0 0  0 2 0  0 0 2'
  [../]
  [./rock_internal_energy]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1100
    density = 2300
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 5E9
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeAxisymmetricRZSmallStrain
    eigenstrain_names = 'thermal_contribution initial_stress'
  [../]
  [./thermal_contribution]
    type = ComputeThermalExpansionEigenstrain
    temperature = T
    thermal_expansion_coeff = 5E-6 # this is the linear thermal expansion coefficient
    eigenstrain_name = thermal_contribution
    stress_free_temperature = 330
  [../]
  [./initial_strain]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '20E6 0 0  0 20E6 0  0 0 20E6'
    eigenstrain_name = initial_stress
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./effective_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./volumetric_strain]
    type = PorousFlowVolumetricStrain
  [../]
[]

[Postprocessors]
  [./effective_fluid_pressure_at_wellbore]
    type = PointValue
    variable = effective_fluid_pressure
    point = '1 0 0'
    execute_on = timestep_begin
    use_displaced_mesh = false
  [../]
  [./constrained_effective_fluid_pressure_at_wellbore]
    type = FunctionValuePostprocessor
    function = constrain_effective_fluid_pressure
    execute_on = timestep_begin
  [../]
[]

[Functions]
  [./constrain_effective_fluid_pressure]
    type = ParsedFunction
    vars = effective_fluid_pressure_at_wellbore
    vals = effective_fluid_pressure_at_wellbore
    value = 'max(effective_fluid_pressure_at_wellbore, 20E6)'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E3
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1E3
    growth_factor = 1.2
    optimal_iterations = 10
  [../]
  nl_abs_tol = 1E-7
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/console/console_off.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  console=false
[]

test/tests/mesh/adapt/patch_recovery_test.i

[Mesh]
  dim = 2
  file = square.e
  uniform_refine = 4
[]

[Variables]
  active = 'u v'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'udiff uconv uie vdiff vconv vie'

  [./udiff]
    type = Diffusion
    variable = u
  [../]

  [./uconv]
    type = Convection
    variable = u
    velocity = '10 1 0'
  [../]

  [./uie]
    type = TimeDerivative
    variable = u
  [../]

  [./vdiff]
    type = Diffusion
    variable = v
  [../]

  [./vconv]
    type = Convection
    variable = v
    velocity = '-10 1 0'
  [../]

  [./vie]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  active = 'uleft uright vleft vright'

  [./uleft]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./uright]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]

  [./vleft]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 1
  [../]

  [./vright]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 2
  dt = .1

  [./Adaptivity]
    refine_fraction = 0.5
    coarsen_fraction = 0.05
#    max_h_level = 8
    error_estimator = PatchRecoveryErrorEstimator
  [../]
[]

[Outputs]
  file_base = patch_out
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer/errors/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Outputs]
  exodus = true
[]

test/tests/auxkernels/solution_aux/solution_aux_exodus_elemental.i

[Mesh]
  file = cubesource.e
  # The SolutionUserObject uses the copy_nodal_solution() capability
  # of the Exodus reader, and therefore won't work if the initial mesh
  # has been renumbered (it will be reunumbered if you are running with
  # DistributedMesh in parallel).  Hence, we restrict this test to run with
  # ReplicatedMesh only.
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
  [./en]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./nn]
    type = SolutionAux
    solution = soln
    variable = nn
    scale_factor = 2.0
    from_variable = source_nodal
  [../]
  [./en]
    type = SolutionAux
    solution = soln
    variable = en
    scale_factor = 2.0
    from_variable = source_element
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = cubesource.e
    system_variables = 'source_nodal source_element'
    timestep = 2
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 50
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/porous_flow/examples/tidal/atm_tides.i

# A 10m x 10m "column" of height 100m is subjected to cyclic pressure at its top
# Assumptions:
# the boundaries are impermeable, except the top boundary
# only vertical displacement is allowed
# the atmospheric pressure sets the total stress at the top of the model
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 10
  zmin = -100
  zmax = 0
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
  biot_coefficient = 0.6
  multiply_by_density = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
    scaling = 1E11
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '-10000*z'  # approximately correct
  [../]
[]

[Functions]
  [./ini_stress_zz]
    type = ParsedFunction
    value = '(25000 - 0.6*10000)*z' # remember this is effective stress
  [../]
  [./cyclic_porepressure]
    type = ParsedFunction
    value = 'if(t>0,5000 * sin(2 * pi * t / 3600.0 / 24.0),0)'
  [../]
  [./neg_cyclic_porepressure]
    type = ParsedFunction
    value = '-if(t>0,5000 * sin(2 * pi * t / 3600.0 / 24.0),0)'
  [../]
[]

[BCs]
  # zmin is called 'back'
  # zmax is called 'front'
  # ymin is called 'bottom'
  # ymax is called 'top'
  # xmin is called 'left'
  # xmax is called 'right'
  [./no_x_disp]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'bottom top' # because of 1-element meshing, this fixes u_x=0 everywhere
  [../]
  [./no_y_disp]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top' # because of 1-element meshing, this fixes u_y=0 everywhere
  [../]
  [./no_z_disp_at_bottom]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  [../]
  [./pp]
    type = FunctionDirichletBC
    variable = porepressure
    function = cyclic_porepressure
    boundary = front
  [../]
  [./total_stress_at_top]
    type = FunctionNeumannBC
    variable = disp_z
    function = neg_cyclic_porepressure
    boundary = front
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.0
      bulk_modulus = 2E9
      viscosity = 1E-3
      density0 = 1000.0
    [../]
  [../]
[]

[PorousFlowBasicTHM]
  coupling_type = HydroMechanical
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  gravity = '0 0 -10'
  fp = the_simple_fluid
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 10.0E9 # drained bulk modulus
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 0 0  0 0 ini_stress_zz'
    eigenstrain_name = ini_stress
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # only the initial value of this is ever used
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    solid_bulk_compliance = 1E-10
    fluid_bulk_modulus = 2E9
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0   0 1E-12 0   0 0 1E-14'
  [../]
  [./density]
    type = GenericConstantMaterial
    prop_names = density
    prop_values = 2500.0
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./uz0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = disp_z
  [../]
  [./p100]
    type = PointValue
    outputs = csv
    point = '0 0 -100'
    variable = porepressure
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = -3600 # so postprocessors get recorded correctly at t=0
  dt = 3600
  end_time = 360000
  nl_abs_tol = 5E-7
  nl_rel_tol = 1E-10
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_3/plane3_template2_sm.i

[Mesh]
  file = plane3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 200
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

test/tests/postprocessors/pps_interval/pps_interval_mismatch.i

[Mesh]
  file = square-2x2-nodeids.e
  # This test can only be run with renumering disabled, so the
  # NodalVariableValue postprocessor's node id is well-defined.
  allow_renumbering = false
[]

[Variables]
  active = 'u v'

  [./u]
    order = SECOND
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Functions]
  active = 'force_fn exact_fn left_bc'

  [./force_fn]
    type = ParsedFunction
    value = '1-x*x+2*t'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = '(1-x*x)*t'
  [../]

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = '
    time_u diff_u ffn_u
    time_v diff_v'

  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'all_u left_v right_v'

  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = exact_fn
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '2'
    value = 0
  [../]
[]

[Postprocessors]
  active = 'l2 node1 node4'

  [./l2]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./node1]
    type = NodalVariableValue
    variable = u
    nodeid = 15
  [../]

  [./node4]
    type = NodalVariableValue
    variable = v
    nodeid = 10
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 1
[]

[Outputs]
  interval = 4
  exodus = true
  [./console]
    type = Console
    interval = 3
  [../]
[]

test/tests/functions/image_function/threshold.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file_base = stack/test
    file_suffix = png
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    threshold = 2.7e4
    upper_value = 1
    lower_value = -1
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[../]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/chemical_reactions/test/tests/aqueous_equilibrium/calcium_bicarbonate.i

# Calcium (Ca++) and bicarbonate (HCO3-) batch equilibrium reaction at 25C
#
# Aqueous equilibrium reactions:
# a)  H+ + HCO3- = CO2(aq),          Keq = 10^(6.3447)
# b)  HCO3- = H+ + CO3--,            Keq = 10^(-10.3288)
# c)  Ca++ + HCO3- = H+ + CaCO3(aq), Keq = 10^(-7.0017)
# d)  Ca++ + HCO3- = CaHCO3+,        Keq = 10^(1.0467)
# e)  Ca++ = H+ + CaOH+,             Keq = 10^(-12.85)
# c)  - H+ = OH-,                    Keq = 10^(-13.9951)
# d)
#
# The primary chemical species are Ca++, H+ and HCO3-, and the secondary equilibrium
# species are CO2(aq), CO3--, CaCO3(aq), CaHCO3+, CaOH+ and OH-

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[AuxVariables]
  [./ph]
  [../]
  [./total_ca++]
  [../]
  [./total_h+]
  [../]
  [./total_hco3-]
  [../]
[]

[AuxKernels]
  [./ph]
    type = PHAux
    variable = ph
    h_conc = h+
  [../]
  [./total_ca++]
    type = TotalConcentrationAux
    variable = total_ca++
    primary_species = ca++
    v = 'caco3_aq cahco3+ caoh+'
    sto_v = '1 1 1'
  [../]
  [./total_h+]
    type = TotalConcentrationAux
    variable = total_h+
    primary_species = h+
    v = 'co2_aq co3-- caco3_aq oh-'
    sto_v = '1 -1 -1 -1'
  [../]
  [./total_hco3-]
    type = TotalConcentrationAux
    variable = total_hco3-
    primary_species = hco3-
    v = 'co2_aq co3-- caco3_aq cahco3+'
    sto_v = '1 1 1 1'
  [../]
[]

[Variables]
  [./ca++]
    initial_condition = 1.0e-5
  [../]
  [./h+]
    initial_condition = 1.0e-5
  [../]
  [./hco3-]
    initial_condition = 3.0e-5
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = 'ca++ hco3- h+'
    secondary_species = 'co2_aq co3-- caco3_aq cahco3+ caoh+ oh-'
    reactions = 'h+ + hco3- = co2_aq 6.3447,
                 hco3- - h+ = co3-- -10.3288,
                 ca++ + hco3- - h+ = caco3_aq -7.0017,
                 ca++ + hco3- = cahco3+ 1.0467,
                 ca++ - h+ = caoh+ -12.85,
                 - h+ = oh- -13.9951'
  [../]
[]

[Kernels]
  [./ca++_ie]
    type = PrimaryTimeDerivative
    variable = ca++
  [../]
  [./h+_ie]
    type = PrimaryTimeDerivative
    variable = h+
  [../]
  [./hco3-_ie]
    type = PrimaryTimeDerivative
    variable = hco3-
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity porosity'
    prop_values = '1e-7 0.25'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  nl_abs_tol = 1e-12
  end_time = 1
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./ca++]
    type = ElementIntegralVariablePostprocessor
    variable = ca++
    execute_on = 'initial timestep_end'
  [../]
  [./h+]
    type = ElementIntegralVariablePostprocessor
    variable = h+
    execute_on = 'initial timestep_end'
  [../]
  [./hco3-]
    type = ElementIntegralVariablePostprocessor
    variable = hco3-
    execute_on = 'initial timestep_end'
  [../]
  [./co2_aq]
    type = ElementIntegralVariablePostprocessor
    variable = co2_aq
    execute_on = 'initial timestep_end'
  [../]
  [./co3--]
    type = ElementIntegralVariablePostprocessor
    variable = co3--
    execute_on = 'initial timestep_end'
  [../]
  [./caco3_aq]
    type = ElementIntegralVariablePostprocessor
    variable = caco3_aq
    execute_on = 'initial timestep_end'
  [../]
  [./cahco3+]
    type = ElementIntegralVariablePostprocessor
    variable = cahco3+
    execute_on = 'initial timestep_end'
  [../]
  [./caoh+]
    type = ElementIntegralVariablePostprocessor
    variable = caoh+
    execute_on = 'initial timestep_end'
  [../]
  [./oh-]
    type = ElementIntegralVariablePostprocessor
    variable = oh-
    execute_on = 'initial timestep_end'
  [../]
  [./ph]
    type = ElementIntegralVariablePostprocessor
    variable = ph
    execute_on = 'initial timestep_end'
  [../]
  [./total_ca++]
    type = ElementIntegralVariablePostprocessor
    variable = total_ca++
    execute_on = 'initial timestep_end'
  [../]
  [./total_hco3-]
    type = ElementIntegralVariablePostprocessor
    variable = total_hco3-
    execute_on = 'initial timestep_end'
  [../]
  [./total_h+]
    type = ElementIntegralVariablePostprocessor
    variable = total_h+
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  perf_graph = true
  csv = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial3.i

[Mesh]
  type = FileMesh
  file = quarter_hole.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./zmin_zzero]
    type = DirichletBC
    variable = disp_z
    boundary = 'zmin'
    value = '0'
  [../]
  [./xmin_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = 'xmin'
    value = '0'
  [../]
  [./ymin_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = 'ymin'
    value = '0'
  [../]
  [./ymax_disp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'ymax'
    function = '-1E-4*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10E6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 40
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 40
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 0.01E6
    mc_edge_smoother = 29
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 1
    fill_method = symmetric_isotropic
    C_ijkl = '0 5E9' # young = 10Gpa, poisson = 0.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 1
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 1
    ep_plastic_tolerance = 1E-11
    plastic_models = mc
    max_NR_iterations = 1000
    debug_fspb = crash
  [../]
[]

# Preconditioning and Executioner options kindly provided by Andrea
[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]


[Executioner]
  end_time = 1.05
  dt = 0.1
  solve_type = NEWTON
  type = Transient

  nl_abs_tol = 1E-10
  nl_rel_tol = 1E-12
  l_tol = 1E-2
  l_max_its = 50
  nl_max_its = 400

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]


[Outputs]
  file_base = uni_axial3
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest3.i

# 2D, interior
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  xmin = 0
  xmax = 4
  ymin = 0
  ymax = 4
[]

[MeshModifiers]
  [./SubdomainBoundingBox]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '1 1 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeleter
    block_id = 1
    depends_on = SubdomainBoundingBox
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/fflux01.i

# 1phase, 1component, constant viscosity, constant insitu permeability
# density with constant bulk, Corey relative perm, nonzero gravity, unsaturated with vanGenuchten
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = -0.7+x+y
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/time_integrators/actually_explicit_euler_verification/ee-ode.i

# Tests that ActuallyExplicitEuler works with scalar variables.
#
# The ODE and IC used are the following:
#   du/dt = 2,       u(0) = 0
# Thus the solution is u(t) = 2*t.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[Variables]
  [./u]
    family = SCALAR
    order = FIRST
    initial_condition = 0
  [../]
[]

[ScalarKernels]
  [./time]
    type = ODETimeDerivative
    variable = u
  [../]
  [./source]
    type = ParsedODEKernel
    variable = u
    function = -2
  [../]
[]

[Executioner]
  type = Transient

  [./TimeIntegrator]
    type = ActuallyExplicitEuler
  [../]
  dt = 1
  num_steps = 5
[]

[Outputs]
  csv = true
[]

modules/xfem/test/tests/solid_mechanics_basic/edge_crack_3d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.2
  elem_type = HEX8
[]

[UserObjects]
  [./square_cut_uo]
    type = RectangleCutUserObject
    cut_data = ' -0.001 0.5 -0.001
                  0.401 0.5 -0.001
                  0.401 0.5  0.201
                 -0.001 0.5  0.201'
  [../]
[]

[AuxVariables]
  [./SED]
   order = CONSTANT
    family = MONOMIAL
  [../]
[]

[DomainIntegral]
  integrals = 'Jintegral InteractionIntegralKI'
  crack_front_points = '0.4 0.5 0.0
                        0.4 0.5 0.1
                        0.4 0.5 0.2'
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '0.2'
  radius_outer = '0.4'
  poissons_ratio = 0.3
  youngs_modulus = 207000
  block = 0
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
    block = 0
  [../]
[]

[Functions]
  [./top_trac_y]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_y]
    type = FunctionNeumannBC
    boundary = top
    variable = disp_y
    function = top_trac_y
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = bottom
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
    block = 0
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = edge_crack_3d_out
  execute_on = 'timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/richards/test/tests/jacobian_1/jn40.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true
# steam = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]

  [./stream_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 0.5
    [../]
  [../]
[]

[DiracKernels]
  [./stream]
    type = RichardsPolyLineSink
    pressures = '-0.5 0.25 0.26 0.5'
    fluxes = '1E5 2E10 -1E10 1E5' # outer ones can not be too big otherwise the PETSc constant state finitedifferencing loses precision
    point_file = jn40.stream
    SumQuantityUO = stream_total_outflow_mass
    variable = pressure
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn40
  exodus = false
[]

test/tests/dampers/min_damping/min_general_damping.i

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./u_dt]
    type = TimeDerivative
    variable = u
  [../]
  [./u_source]
    type = BodyForce
    variable = u
    value = 1
  [../]
[]

[Dampers]
  [./limit]
    type = ConstantDamper
    damping = 0.25
    min_damping = 0.5
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 1.0
  dtmin = 0.5
[]

[Postprocessors]
  [./u_avg]
    type = ElementAverageValue
    variable = u
  [../]
  [./dt]
    type = TimestepSize
  [../]
[]

modules/xfem/test/tests/moving_interface/moving_level_set.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutSetUserObject
    cut_data = '0.3 1.0 0.3 0.2 0 3'
    heal_always = false
  [../]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
    heal_always = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '3   5'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = 'x-0.7-0.07*(t-1)'
  [../]
[]

[Constraints]
  [./u_constraint]
    type = XFEMSingleVariableConstraint
    geometric_cut_userobject = 'level_set_cut_uo'
    use_displaced_mesh = false
    variable = u
    use_penalty = true
    alpha = 1e5
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 3
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  # petsc_options_iname = '-pc_type -pc_hypre_type'
  # petsc_options_value = 'hypre boomeramg'
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-9

  start_time = 0.0
  dt = 1
  end_time = 3.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cdp_cwp_coss02.i

#Cosserat capped weak plane and capped drucker prager, coming back to a mix of shear and tensile failure in both
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 0.4
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    yield_function_tolerance = 1E-11     # irrelevant here
    internal_constraint_tolerance = 1E-9 # irrelevant here
  [../]

  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 2.055555555556E-01
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 10.0
    poisson = 0.25
    layer_thickness = 10.0
    joint_normal_stiffness = 2.5
    joint_shear_stiffness = 2.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1 0.1 0  0.1 2 0  11 12 10' # note unsymmetric
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = 'dp wp'
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
  [../]
  [./dp]
    type = CappedDruckerPragerCosseratStressUpdate
    host_youngs_modulus = 10.0
    host_poissons_ratio = 0.25
    base_name = dp
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-11
    tip_smoother = 1
    smoothing_tol = 1
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    base_name = wp
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0.1
    smoothing_tol = 0.1
    yield_function_tol = 1E-11
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  end_time = 1
  dt = 1
  type = Transient
[]

test/tests/time_integrators/newmark-beta/newmark_beta_prescribed_parameters.i

###########################################################
# This is a simple test with a time-dependent problem
# demonstrating the use of the TimeIntegrator system.
#
# Testing that the first and second time derivatives
# are calculated correctly using the Newmark-Beta method
#
# @Requirement F1.30
###########################################################

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Functions]
  [forcing_fn]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2    0.3  0.4    0.5  0.6'
    y = '0.0 0.0 0.0025 0.01 0.0175 0.02 0.02'
  []
[]

[Kernels]
  [ie]
    type = TimeDerivative
    variable = u
  []

  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [left]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left'
    function = forcing_fn
  []
  [right]
    type = FunctionDirichletBC
    variable = u
    boundary = 'right'
    function = forcing_fn
  []
[]

[Executioner]
  type = Transient
  start_time = 0.0
  num_steps = 6
  dt = 0.1
  [TimeIntegrator]
    type = NewmarkBeta
    beta = 0.4225
    gamma = 0.8
  []
[]

[Postprocessors]
  [udot]
    type = ElementAverageTimeDerivative
    variable = u
  []
  [udotdot]
    type = ElementAverageSecondTimeDerivative
    variable = u
  []
  [u]
    type = ElementAverageValue
    variable = u
  []
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/chemistry/except17.i

# Exception test.
# Incorrect number of equilibrium reactions

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1E2
  [../]
  [./eqm_k1]
    initial_condition = 1E-2
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'a b'
    num_reactions = 2
    equilibrium_constants = 'eqm_k0 eqm_k1'
    primary_activity_coefficients = '1 1'
    secondary_activity_coefficients = '1 1'
    reactions = '2 0
                 1 1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/peridynamics/test/tests/jacobian_check/2D_thermomechanics_OSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = ORDINARY_STATE
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConductionBPD
    variable = temp
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.0
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialOSPD
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
  [../]

  [./thermal]
    type = ThermalConstantHorizonMaterialBPD
    thermal_conductivity = 1.0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1
[]

modules/porous_flow/test/tests/chemistry/except1.i

# Exception test.
# Incorrect number of secondary activity coefficients

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_equilibrium = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1E2
  [../]
  [./eqm_k1]
    initial_condition = 1E-2
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'a b'
    num_reactions = 2
    equilibrium_constants = 'eqm_k0 eqm_k1'
    primary_activity_coefficients = '1 1'
    secondary_activity_coefficients = '1'
    reactions = '2 0
                 1 1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/richards/test/tests/pressure_pulse/pp_fu_22.i

# investigating pressure pulse in 1D with 2 phase
# transient

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E3
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E3
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[ICs]
  [./water_ic]
    type = ConstantIC
    value = 2E6
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2E6
    variable = pgas
  [../]
[]


[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pwater
  [../]
  [./left_gas]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pgas
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas pconstraint'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
  [./pconstraint]
    type = RichardsPPenalty
    variable = pgas
    a = 1E-8
    lower_var = pwater
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    viscosity = '1E-3 1E-5'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-pc_factor_shift_type'
    petsc_options_value = 'nonzero'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_rel_tol = 1.e-9
  nl_max_its = 20
  dt = 1E3
  dtmin = 1E3
  end_time = 1E4
[]

[Outputs]
  file_base = pp_fu_22
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

modules/combined/test/tests/simple_contact/sm/simple_contact_rz_dirac_test_sm.i

#
# The analytic solution is:
#   disp_x = -7e-5 * x
#   disp_y =  6e-5 * y
#   stress_xx = stress_zz = -100
#   stress_yy = stress_xy = 0
#
# Note: Run merged_rz.i to generate a solution to compare to that doesn't use contact.

[Mesh]
  file = contact_rz.e
  # PETSc < 3.5.0 requires the iteration patch_update_strategy to
  # avoid PenetrationLocator warnings, which are currently treated as
  # errors by the TestHarness.
  patch_update_strategy = 'iteration'
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Problem]
  coord_type = RZ
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 1'
    scale_factor = 100
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e5
    system = DiracKernel
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 10
    value = 0.0
  [../]

  [./Pressure]
    [./right_pressure]
      boundary = 4
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
    [../]
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    formulation = NonlinearRZ
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    formulation = NonlinearRZ

    block = 2

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type '
  petsc_options_value = 'lu       '

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-9

  l_max_its = 20
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/multiapps/initial_intactive/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1 # This will be constrained by the master solve

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/3d_moving_penetration/pl_test2.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test2.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test2_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/plane_stress/weak_plane_stress_finite.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  temperature = temp
  out_of_plane_strain = strain_zz
[]

[Mesh]
  file = square.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./strain_zz]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./nl_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
  [./min_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = min
  [../]
  [./max_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = max
  [../]
[]

[Modules/TensorMechanics/Master]
  [plane_stress]
    planar_formulation = WEAK_PLANE_STRESS
    strain = FINITE
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy'
    eigenstrain_names = eigenstrain
  []
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = nl_strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0     1   100'
    y='0  0.00  0.00'
  [../]
  [./tempfunc]
    type = ParsedFunction
    value = '(1 - x) * t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-06

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/tensile/small_deform7.i

# checking for small deformation
# A single element is incrementally stretched in the in the z direction
# This causes the return direction to be along the hypersurface sigma_II = sigma_III,
# and the resulting stresses are checked to lie on the expected yield surface
#
# tensile_strength is set to 1Pa,
# cap smoothing is used with tip_smoother = 0.0, cap_start = 0.5, cap_rate = 2.0
# Lode angle = -30degrees


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.25E-6*z*t*t'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./mc]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    yield_function_tolerance = 1E-6
    tip_scheme = cap
    tensile_tip_smoother = 0.0
    cap_start = -0.5
    cap_rate = 2
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    max_NR_iterations = 1000
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 9
  dt = 0.9
  type = Transient
[]


[Outputs]
  file_base = small_deform7
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/notched_plastic_block/cmc_planar.i

# Uses an unsmoothed version of capped-Mohr-Coulomb (via ComputeMultiPlasticityStress with TensorMechanicsPlasticTensileMulti and TensorMechanicsPlasticMohrCoulombMulti) to simulate the following problem.
# A cubical block is notched around its equator.
# All of its outer surfaces have roller BCs, but the notched region is free to move as needed
# The block is initialised with a high hydrostatic tensile stress
# Without the notch, the BCs do not allow contraction of the block, and this stress configuration is admissible
# With the notch, however, the interior parts of the block are free to move in order to relieve stress, and this causes plastic failure
# The top surface is then pulled upwards (the bottom is fixed because of the roller BCs)
# This causes more failure
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 9
    ny = 9
    nz = 9
    xmin = 0
    xmax = 0.1
    ymin = 0
    ymax = 0.1
    zmin = 0
    zmax = 0.1
  []
  [block_to_remove_xmin]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 -0.01 0.045'
    top_right = '0.01 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = generated_mesh
  []
  [block_to_remove_xmax]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0.09 -0.01 0.045'
    top_right = '0.11 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_xmin
  []
  [block_to_remove_ymin]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 -0.01 0.045'
    top_right = '0.11 0.01 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_xmax
  []
  [block_to_remove_ymax]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 0.09 0.045'
    top_right = '0.11 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_ymin
  []
  [remove_block]
    type = BlockDeletionGenerator
    block_id = 1
    input = block_to_remove_ymax
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_zz'
    eigenstrain_names = ini_stress
  [../]
[]

[Postprocessors]
  [./uz]
    type = PointValue
    point = '0 0 0.1'
    use_displaced_mesh = false
    variable = disp_z
  [../]
  [./s_zz]
    type = ElementAverageValue
    use_displaced_mesh = false
    variable = stress_zz
  [../]
  [./num_res]
    type = NumResidualEvaluations
  [../]
  [./nr_its]
    type = ElementAverageValue
    variable = num_iters
  [../]
  [./max_nr_its]
    type = ElementExtremeValue
    variable = num_iters
  [../]
  [./runtime]
    type = PerfGraphData
    data_type = TOTAL
    section_name = 'Root'
  [../]
[]

[BCs]
  # back=zmin, front=zmax, bottom=ymin, top=ymax, left=xmin, right=xmax
  [./xmin_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./xmax_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./ymin_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./ymax_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.0
  [../]
  [./zmin_zzero]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = '0'
  [../]
  [./zmax_disp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '1E-6*max(t,0)'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./num_iters]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./plastic_strain_aux]
    type = MaterialRankTwoTensorAux
    i = 2
    j = 2
    property = plastic_strain
    variable = plastic_strain
  [../]
  [./num_iters_auxk] # cannot use plastic_NR_iterations directly as this is zero, since no NR iterations are actually used, since we use a custom algorithm to do the return
    type = ParsedAux
    args = plastic_strain
    function = 'if(plastic_strain>0,1,0)'
    variable = num_iters
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 3E6
  [../]
  [./tensile]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = ts
    yield_function_tolerance = 1
    internal_constraint_tolerance = 1.0E-6
    #shift = 1
    use_custom_returnMap = false
    use_custom_cto = false
  [../]

  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 5E6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 10
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
    use_custom_returnMap = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 16E9
    poissons_ratio = 0.25
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-6
    plastic_models = 'tensile mc'
    max_NR_iterations = 50
    specialIC = rock
    deactivation_scheme = safe_to_dumb
    debug_fspb = crash
  [../]
  [./strain_from_initial_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2.5E6 0 0  0 2.5E6 0  0 0 2.5E6'
    eigenstrain_name = ini_stress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  start_time = -1
  end_time = 10
  dt = 1
  solve_type = NEWTON
  type = Transient

  l_tol = 1E-2
  nl_abs_tol = 1E-5
  nl_rel_tol = 1E-7
  l_max_its = 200
  nl_max_its = 400

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]


[Outputs]
  file_base = cmc_planar
  perf_graph = true
  exodus = false
  csv = true
[]

test/tests/multiapps/output_in_position/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/jacobian_1/jn13.i

# unsaturated = false
# gravity = false
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn13
  exodus = false
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform3.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.25E-6*y*sin(t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 50
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0
    value_residual = 0.8726646 # 50deg
    rate = 3000.0
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4
    mc_edge_smoother = 20
    yield_function_tolerance = 1E-8
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 30
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/visco/gen_maxwell_driving.i

# Represents a unique Maxwell module with E = 10GPa and eta = 10 days with an imposed eigenstrain alpha = 0.001.
# The behavior is set up so that the creep strain is driven by both the elastic stress and the internal
# stress induced by the eigenstrain (E * alpha).
#
# In this test, the specimen is free of external stress (sigma = 0) so the creep deformation only derives from
# the eigenstrain. The total strain to be expected is:
#     epsilon = alpha * (1 + t / eta)
# Both the stress and the elastic strain are 0.
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    variable = stress_xx
    rank_two_tensor = stress
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./strain_xx]
    type = RankTwoAux
    variable = strain_xx
    rank_two_tensor = total_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    variable = creep_strain_xx
    rank_two_tensor = creep_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
[]

[Materials]
  [./eigen]
    type = ComputeEigenstrain
    eigenstrain_name = eigen_true
    eigen_base = '1e-3 1e-3 1e-3 0 0 0'
  [../]
  [./maxwell]
    type = GeneralizedMaxwellModel
    creep_modulus = '10e9'
    creep_viscosity = '10'
    poisson_ratio = 0.2
    young_modulus = 10e9
    driving_eigenstrain = eigen_true
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'creep'
  [../]
  [./creep]
    type = LinearViscoelasticStressUpdate
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = 'eigen_true'
  [../]
[]

[UserObjects]
  [./update]
    type = LinearViscoelasticityManager
    viscoelastic_model = maxwell
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./creep_strain_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  l_max_its  = 50
  l_tol      = 1e-8
  nl_max_its = 20
  nl_rel_tol = 1e-11
  nl_abs_tol = 1e-8

  dtmin = 0.01
  end_time = 100
  [./TimeStepper]
    type = LogConstantDT
    first_dt = 0.1
    log_dt = 0.1
  [../]

[]

[Outputs]
  file_base = gen_maxwell_driving_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/shell/static/beam_bending_moment_AD_2.i

# Test that models bending of a rotated cantilever beam using shell elements

# A cantilever beam of length 10 m (in Z direction) and cross-section
# 1 m x 0.1 m is modeled using 4 shell elements placed along the length
# (Figure 6a from Dvorkin and Bathe, 1984). All displacements and
# X rotations are fixed on the bottom boundary. E = 2100000 and v = 0.0.
# A load of 0.5 N (in the Y direction) is applied at each node on the top
# boundary resulting in a total load of 1 N.

# The analytical solution for displacement at tip using small strain/rotations # is PL^3/3EI + PL/AG = 1.90485714 m
# The FEM solution using 4 shell elements is 1.875095 m with a relative error
# of 1.5%.

# Similarly, the analytical solution for slope at tip is PL^2/2EI = 0.285714286
# The FEM solution is 0.2857143 and the relative error is 5e-6%.

# The stress_zz for the four elements at y = -0.57735 * (t/2) (first qp below mid-surface of shell) are:
# 3031.089 Pa, 2165.064 Pa, 1299.038 Pa and 433.0127 Pa.
# Note the above values are the average stresses in each element.

# Analytically, stress_zz decreases linearly from z = 0 to z = 10 m.
# The maximum value of stress_zz at z = 0 is My/I = PL * 0.57735*(t/2)/I = 3464.1 Pa
# Therefore, the analytical value of stress at y = -0.57735 * (t/2) at the mid-point
# of the four elements are:
# 3031.0875 Pa, 2165.0625 Pa, 1299.0375 Pa ,433.0125 Pa

# The relative error in stress_zz is in the order of 5e-5%.

# The stress_yz at y = -0.57735 * (t/2) at all four elements from the simulation is 10 Pa.
# The analytical solution for the shear stress is: V/2/I *((t^2)/4 - y^2), where the shear force (V)
# is 1 N at any z along the length of the beam. Therefore, the analytical shear stress at
# y = -0.57735 * (t/2) is 10 Pa at any location along the length of the beam.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 4
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 10.0
[]

[MeshModifiers]
  [./rotate]
    type = Transform
    transform = ROTATE
    vector_value = '0 90 0'
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = global_stress_t_points_0
    index_i = 2
    index_j = 2
  [../]
  [./stress_yz]
    type = RankTwoAux
    variable = stress_yz
    rank_two_tensor = global_stress_t_points_0
    index_i = 1
    index_j = 2
  [../]
[]

[BCs]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = 'bottom'
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = 'bottom'
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = 'bottom'
    value = 0.0
  [../]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 'bottom'
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = ConstantRate
    variable = disp_y
    boundary = 'top'
    rate = 0.5
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  nl_max_its = 2
  nl_rel_tol = 1e-10
  nl_abs_tol = 5e-4

  dt = 1
  dtmin = 1
  end_time = 1
[]

[Kernels]
  [./solid_disp_x]
    type = ADStressDivergenceShell
    block = '0'
    component = 0
    variable = disp_x
    through_thickness_order = SECOND
  [../]
  [./solid_disp_y]
    type = ADStressDivergenceShell
    block = '0'
    component = 1
    variable = disp_y
    through_thickness_order = SECOND
  [../]
  [./solid_disp_z]
    type = ADStressDivergenceShell
    block = '0'
    component = 2
    variable = disp_z
    through_thickness_order = SECOND
  [../]
  [./solid_rot_x]
    type = ADStressDivergenceShell
    block = '0'
    component = 3
    variable = rot_x
    through_thickness_order = SECOND
  [../]
  [./solid_rot_y]
    type = ADStressDivergenceShell
    block = '0'
    component = 4
    variable = rot_y
    through_thickness_order = SECOND
  [../]
[]

[Materials]
  [./elasticity]
    type = ADComputeIsotropicElasticityTensorShell
    youngs_modulus = 2100000
    poissons_ratio = 0.0
    block = 0
    through_thickness_order = SECOND
  [../]
  [./strain]
    type = ADComputeIncrementalShellStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y'
    thickness = 0.1
    through_thickness_order = SECOND
  [../]
  [./stress]
    type = ADComputeShellStress
    block = 0
    through_thickness_order = SECOND
  [../]
[]

[Postprocessors]
  [./disp_z_tip]
    type = PointValue
    point = '1.0 0.0 10.0'
    variable = disp_y
  [../]
  [./rot_y_tip]
    type = PointValue
    point = '0.0 0.0 10.0'
    variable = rot_y
  [../]
  [./stress_zz_el_0]
    type = ElementalVariableValue
    elementid = 0
    variable = stress_zz
  [../]
  [./stress_zz_el_1]
    type = ElementalVariableValue
    elementid = 1
    variable = stress_zz
  [../]
  [./stress_zz_el_2]
    type = ElementalVariableValue
    elementid = 2
    variable = stress_zz
  [../]
  [./stress_zz_el_3]
    type = ElementalVariableValue
    elementid = 3
    variable = stress_zz
  [../]
  [./stress_yz_el_0]
    type = ElementalVariableValue
    elementid = 0
    variable = stress_yz
  [../]
  [./stress_yz_el_1]
    type = ElementalVariableValue
    elementid = 1
    variable = stress_yz
  [../]
  [./stress_yz_el_2]
    type = ElementalVariableValue
    elementid = 2
    variable = stress_yz
  [../]
  [./stress_yz_el_3]
    type = ElementalVariableValue
    elementid = 3
    variable = stress_yz
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/pressure/pressure_test.i

#
# Pressure Test
#
# This test is designed to compute pressure loads on three faces of a unit cube.
#
# The mesh is composed of one block with a single element.  Symmetry bcs are
#   applied to the faces opposite the pressures.  Poisson's ratio is zero,
#   which makes it trivial to check displacements.
#

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
  disp_z = disp_z
[../]

[Mesh]#Comment
  file = pressure_test.e
[] # Mesh

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1.0
  [../]
  [./zeroRamp]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 0. 1.'
    scale_factor = 2.0
  [../]
  [./rampUnramp]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 0.'
    scale_factor = 10.0
  [../]
[] # Functions

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = SMALL
  []
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 5
    value = 0.0
  [../]

  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 1
      function = rampConstant
    [../]
    [./Side2]
      boundary = 2
      function = zeroRamp
    [../]
    [./Side3]
      boundary = 3
      function = rampUnramp
    [../]
  [../]
[] # BCs

[Materials]
  [./constant]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.0
  [../]
  [./constant_stress]
    type = ComputeLinearElasticStress
    block = '1'
  [../]
[]


[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  nl_abs_tol = 1e-10
  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[] # Executioner

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

modules/level_set/examples/rotating_circle/circle_rotate.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 32
  ny = 32
  uniform_refine = 2
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./vel_y]
  [../]
[]

[AuxKernels]
  [./vel_x]
    type = FunctionAux
    function = 4*y
    variable = vel_x
    execute_on = initial
  [../]
  [./vel_y]
    type = FunctionAux
    function = -4*x
    variable = vel_y
    execute_on = initial
  [../]
[]

[Variables]
  [./phi]
  [../]
[]

[Functions]
  [./phi_exact]
    type = LevelSetOlssonBubble
    epsilon = 0.03
    center = '0 0.5 0'
    radius = 0.15
  [../]
[]

[ICs]
  [./phi_ic]
    type = FunctionIC
    function = phi_exact
    variable = phi
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = phi
  [../]

  [./advection]
    type = LevelSetAdvection
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  [../]
[]

[Postprocessors]
  [./area]
    type = LevelSetVolume
    threshold = 0.5
    variable = phi
    location = outside
    execute_on = 'initial timestep_end'
  [../]
  [./cfl]
    type = LevelSetCFLCondition
    velocity_x = vel_x
    velocity_y = vel_y
    execute_on = 'initial' #timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  start_time = 0
  end_time = 1.570796
  scheme = crank-nicolson
  petsc_options_iname = '-pc_type -pc_sub_type'
  petsc_options_value = 'asm      ilu'
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = cfl
    scale = 0.8
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/2D_different_planes/gps_xy.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
 file = square_xy_plane.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./generalized_plane_strain]
    block = 1
    strain = SMALL
    scalar_out_of_plane_strain = scalar_strain_zz
    out_of_plane_direction = z
    planar_formulation = GENERALIZED_PLANE_STRAIN
    eigenstrain_names = 'eigenstrain'
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy strain_zz'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 3
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_stress]
    type = ComputeLinearElasticStress
    block = 1
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    use_displaced_mesh = false
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-10

# controls for nonlinear iterations
  nl_max_its = 10
  nl_rel_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  file_base = gps_xy_small_out
  [./exodus]
    type = Exodus
  [../]
[]

test/tests/auxkernels/pp_depend/pp_depend.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./pp_aux]
  [../]
[]

[Functions]
  [./t_func]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.01
  [../]
[]

[AuxKernels]
  [./pp_aux]
    type = PostprocessorAux
    variable = pp_aux
    execute_on = timestep_end
    pp = t_pp
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./t_pp]
    type = FunctionValuePostprocessor
    function = t_func
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  dt = 1
  num_steps = 5
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/mass/m01.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
  xmin = -1
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.5
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = x
  [../]
[]

[Postprocessors]
  [./total_mass]
    type = RichardsMass
    variable = pressure
  [../]
[]

[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1 1 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-10
  end_time = 1E-10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = m01
  csv = true
[]

test/tests/transfers/multiapp_postprocessor_interpolation_transfer/sub1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_postprocessor_transfer/sub0.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_1/ring1_mu_0_2_pen.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring1_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = ring1_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = ring1_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/stochastic_tools/test/tests/multiapps/batch_sampler_transient_multiapp/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [average]
    type = AverageNodalVariableValue
    variable = u
  []
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Outputs]
[]

test/tests/transfers/multiapp_postprocessor_interpolation_transfer/quad_sub2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./pp]
    type = Receiver
    default = 2
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/plastic_heating/tensile01.i

# Tensile heating, using capped weak-plane plasticity
# z_disp(z=1) = t
# totalstrain_zz = t
# with C_ijkl = 0.5 0.25
# stress_zz = t, but with tensile_strength = 1, stress_zz = min(t, 1)
# so plasticstrain_zz = t - 1
# heat_energy_rate = coeff * (t - 1)
# Heat capacity of rock = specific_heat_cap * density = 4
# So temperature of rock should be:
# (1 - porosity) * 4 * T = (1 - porosity) * coeff * (t - 1)
[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = -10
  xmax = 10
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
[]

[Variables]
  [./temperature]
  [../]
[]

[Kernels]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temperature
  [../]
  [./phe]
    type = PorousFlowPlasticHeatEnergy
    variable = temperature
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxKernels]
  [./disp_z]
    type = FunctionAux
    variable = disp_z
    function = z*t
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = temperature
    number_fluid_phases = 0
    number_fluid_components = 0
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 1.0
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
[]

[Materials]
  [./rock_internal_energy]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 2
    density = 2
  [../]
  [./temp]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./phe]
    type = ComputePlasticHeatEnergy
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0.5 0.25'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanphi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-10
    perfect_guess = true
  [../]
[]

[Postprocessors]
  [./temp]
    type = PointValue
    point = '0 0 0'
    variable = temperature
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 10
[]

[Outputs]
  file_base = tensile01
  csv = true
[]

test/tests/geomsearch/2d_moving_penetration/restart.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test1.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 0.5
[]

[Outputs]
  exodus = true
  checkpoint = true
[]

modules/porous_flow/test/tests/dispersion/disp01.i

# Test dispersive part of PorousFlowDispersiveFlux kernel by setting diffusion
# coefficients to zero. A pressure gradient is applied over the mesh to give a
# uniform velocity. Gravity is set to zero.
# Mass fraction is set to 1 on the left hand side and 0 on the right hand side.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmax = 10
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
[]

[AuxVariables]
  [./velocity]
    family = MONOMIAL
    order = FIRST
  [../]
[]

[AuxKernels]
  [./velocity]
    type = PorousFlowDarcyVelocityComponent
    variable = velocity
    component = x
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = pic
  [../]
  [./massfrac0]
    type = ConstantIC
    variable = massfrac0
    value = 0
  [../]
[]

[Functions]
  [./pic]
    type = ParsedFunction
    value = 1.1e5-x*1e3
  [../]
[]

[BCs]
  [./xleft]
    type = DirichletBC
    value = 1
    variable = massfrac0
    boundary = left
  [../]
  [./xright]
    type = DirichletBC
    value = 0
    variable = massfrac0
    boundary = right
  [../]
  [./pright]
    type = DirichletBC
    variable = pp
    boundary = right
    value = 1e5
  [../]
  [./pleft]
    type = DirichletBC
    variable = pp
    boundary = left
    value = 1.1e5
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
  [../]
  [./diff0]
    type = PorousFlowDispersiveFlux
    variable = pp
    disp_trans = 0
    disp_long = 0.2
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = massfrac0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = massfrac0
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    disp_trans = 0
    disp_long = 0.2
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1e9
      density0 = 1000
      viscosity = 0.001
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = massfrac0
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro]
    type = PorousFlowPorosityConst
    porosity = 0.3
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '0 0'
    tortuosity = 0.1
  [../]
  [./relp]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-9 0 0 0 1e-9 0 0 0 1e-9'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2             '
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1e3
  dtmax = 50
  [./TimeStepper]
    type = IterationAdaptiveDT
    growth_factor = 1.5
    cutback_factor = 0.5
    dt = 1
  [../]
[]

[VectorPostprocessors]
  [./xmass]
    type = NodalValueSampler
    sort_by = id
    variable = massfrac0
  [../]
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/tensor_mechanics/test/tests/recompute_radial_return/uniaxial_viscoplasticity_incrementalstrain.i

# This is a test of the HyperbolicViscoplasticityStressUpdate model
# using the small strain formulation. The material is a visco-plastic material
# i.e. a time-dependent linear strain hardening plasticity model.
# A similar problem was run in Abaqus with exactly the same result, although the element
# used in the Abaqus simulation was a CAX4 element.  Neverthless, due to the boundary conditions
# and load, the MOOSE and Abaqus result are the same.

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = 1x1x1cube.e
[]

[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t/100
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_yy plastic_strain_xx plastic_strain_yy plastic_strain_zz'
  [../]
[]

[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1000.0
    poissons_ratio = 0.3
  [../]
  [./viscoplasticity]
    type = HyperbolicViscoplasticityStressUpdate
    yield_stress = 10.0
    hardening_constant = 100.0
    c_alpha = 0.2418e-6
    c_beta = 0.1135
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'viscoplasticity'
    tangent_operator = elastic
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  line_search = none


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  num_steps = 30

  dt = 1.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/combined/test/tests/feature_volume_fraction/Avrami.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  nz = 0

  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 20
      y1 = 20
      radius = 10
      int_width = 1
      invalue = 1
      outvalue = 0
    [../]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[VectorPostprocessors]
  [./feature_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = feature_counter
    execute_on = 'initial timestep_end'
    outputs = none
  [../]
[]

[Postprocessors]
  [./feature_counter]
    type = FeatureFloodCount
    variable = u
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_end'
  [../]
  [./Volume]
    type = VolumePostprocessor
    execute_on = 'initial'
  [../]
  [./Avrami]
    type = FeatureVolumeFraction
    execute_on = 'initial timestep_end'
    mesh_volume = Volume
    feature_volumes = feature_volumes
    equil_fraction = 0.5
    value_type = AVRAMI
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  num_steps = 2
[]

[Outputs]
  csv = true
[]

modules/richards/test/tests/gravity_head_1/gh12.i

# unsaturated = true
# gravity = true
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = -1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGnone
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh12
  exodus = true
[]

test/tests/multiapps/detect_steady_state/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 100
  dt = 0.1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/transient_multiapp/dt_from_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [sub_app]
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = 'dt_from_master_sub.i'
    positions = '0   0   0
                 0.5 0.5 0
                 0.6 0.6 0
                 0.7 0.7 0'
  []
[]

test/tests/transfers/multiapp_mesh_function_transfer/exec_on_mismatch.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [transferred_u]
  []
  [elemental_transferred_u]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [sub]
    positions = '.099 .099 0 .599 .599 0 0.599 0.099 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = fromsub_sub.i
    execute_on = 'initial timestep_begin'
  []
[]

[Transfers]
  [from_sub]
    source_variable = sub_u
    direction = from_multiapp
    variable = transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
    execute_on = 'initial timestep_end'
  []
  [elemental_from_sub]
    source_variable = sub_u
    direction = from_multiapp
    variable = elemental_transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
  []
[]

modules/tensor_mechanics/test/tests/jacobian/cto25.i

# CappedDruckerPrager

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 0.4
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    yield_function_tolerance = 1E-11     # irrelevant here
    internal_constraint_tolerance = 1E-9 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    lambda = 0.0
    shear_modulus = 1.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6 5 4  5 7 2  4 2 2'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = dp
  [../]
  [./dp]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-11
    tip_smoother = 1
    smoothing_tol = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/large_deform2.i

# large strain with weak-plane normal rotating with mesh
# First rotate mesh 45deg about x axis
# Then apply stretch in the y=z direction.
# This should create a pure tensile load (no shear), which
# should return to the yield surface.
#
# Since cohesion=1E6 and tan(friction_angle)=1, and
# wps_smoother = 0.5E6, the apex of the weak-plane cone is
# at normal_stress = 0.5E6.  So, the result should be
# s_yy = s_yz = s_zz = 0.25E6
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  # rotate:
  # ynew = c*y + s*z.  znew = -s*y + c*z
  [./bottomx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = back
    function = '0'
  [../]
  [./bottomy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = back
    function = '0.70710678*y+0.70710678*z-y'
  [../]
  [./bottomz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = back
    function = '-0.70710678*y+0.70710678*z-z'
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = '0'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = '0.70710678*y+0.70710678*z-y+if(t>0,1,0)'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '-0.70710678*y+0.70710678*z-z+if(t>0,1,0)'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.111107723
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 0.5E6
    yield_function_tolerance = 1E-9
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-8
    debug_fspb = crash
  [../]
[]


[Executioner]
  start_time = -1
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = large_deform2
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

test/tests/multiapps/picard_sub_cycling/fully_coupled.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
  [./td_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-14
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/coupled_pressure/coupled_pressure_test.i

#
# Pressure Test
#
# This test is designed to compute pressure loads on three faces of a unit cube.
# The pressure is computed as an auxiliary variable. It should give the same result
# as pressure_test.i
#
# The mesh is composed of one block with a single element.  Symmetry bcs are
# applied to the faces opposite the pressures.  Poisson's ratio is zero,
# which makes it trivial to check displacements.
#


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = FileMesh
  file = pressure_test.e
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1.0
  [../]
  [./zeroRamp]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 0. 1.'
    scale_factor = 2.0
  [../]
  [./rampUnramp]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 0.'
    scale_factor = 10.0
  [../]
[]

[AuxVariables]
  [./pressure_1]
  [../]
  [./pressure_2]
  [../]
  [./pressure_3]
  [../]
[]

[AuxKernels]
  [./side1_pressure_ak]
    type = FunctionAux
    variable = pressure_1
    boundary = 1
    function = rampConstant
  [../]
  [./side2_pressure_ak]
    type = FunctionAux
    variable = pressure_2
    boundary = 2
    function = zeroRamp
  [../]
  [./side3_pressure_ak]
    type = FunctionAux
    variable = pressure_3
    boundary = 3
    function = rampUnramp
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = SMALL
        add_variables = true
      [../]
    [../]
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 5
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./CoupledPressure]
    [./Side1]
      boundary = '1'
      pressure = pressure_1
      displacements = 'disp_x disp_y disp_z'
    [../]
    [./Side2]
      boundary = '2'
      pressure = pressure_2
      displacements = 'disp_x disp_y disp_z'
    [../]
  [../]

  [./side3_x]
    type = CoupledPressureBC
    variable = 'disp_x'
    boundary = '3'
    pressure = pressure_3
    component = 0
  [../]
  [./side3_y]
    type = CoupledPressureBC
    variable = 'disp_y'
    boundary = '3'
    pressure = pressure_3
    component = 1
  [../]
  [./side3_z]
    type = CoupledPressureBC
    variable = 'disp_z'
    boundary = '3'
    pressure = pressure_3
    component = 2
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5e6'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  nl_abs_tol = 1e-10
  l_max_its = 20
  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/time_integrators/bdf2/bdf2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 20
  ny = 20
  elem_type = QUAD9
[]

[Variables]
  active = 'u'

  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  start_time = 0.0
  num_steps = 5
  dt = 0.25

#  [./Adaptivity]
#    refine_fraction = 0.2
#    coarsen_fraction = 0.3
#    max_h_level = 4
#  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/two_way_many_apps_master.i

# In this test, the Master App is a 10x10 grid on the unit square, and
# there are 5 Sub Apps which correspond to each vertex of the unit square
# and the center, arranged in the following order:
# 3   4
#   2
# 0   1
# Sub Apps 0, 1, 3, and 4 currently overlap with a single element in
# each corner of the Master App, while Sub App 2 overlaps with 4
# Master App elements in the center. Note that we move the corner Sub
# Apps "outward" slightly along the diagonals to avoid ambiguity with
# which SubApp is "nearest" to a given Master App element centroid.
# This makes it easier to visually verify that the Transfers are
# working correctly.
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_sub]
  [../]
  [./elemental_from_sub]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    # Note, in case you want to modify this test.  It is important that there are
    # an odd number of apps because this way we will catch errors caused by load
    # imbalances with our -p 2 tests.
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '-0.11 -0.11 0.0
                 0.91 -0.11 0.0
                 0.4 0.4 0.0
                 -0.11 0.91 0.0
                 0.91 0.91 0.0'
    input_files = two_way_many_apps_sub.i
    execute_on = timestep_end
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = from_sub
  [../]
  [./elemental_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = elemental_from_sub
  [../]
  [./to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = from_master
  [../]
  [./elemental_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = elemental_from_master
  [../]
[]

modules/xfem/test/tests/second_order_elements/diffusion_2d_tri6.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 4
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = TRI6
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.35 1.0 0.35 0.2'
    time_start_cut = 0.0
    time_end_cut = 2.0
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 3
    function = u_left
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/contact/4ElemTensionRelease_mechanical_constraint.i

# This is a mechanical constraint (contact formulation) version of 4ElemTensionRelease.i
[Mesh]
  file = 4ElemTensionRelease.e
[]

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1      2 3'
    y = '0 0.0001 0 -.0001'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = SMALL
    generate_output = 'stress_yy'
  []
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = frictionless
    tangential_tolerance = 0.01
    system = constraint
  [../]
[]

[BCs]
  [./lateral]
    type = DirichletBC
    variable = disp_x
    boundary = '1 4'
    value = 0
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = up
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff1_stress]
    type = ComputeLinearElasticStress
    block = '1 2'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 10
  dt = 0.2
  dtmin = 0.2
  end_time = 3

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/dampers/bounding_value_element_damper/bounding_value_max_test.i

# This model tests the BoundingValueElementDamper. The converged solution
# for u starts out in the range from 0 to 1, but after several steps,
# a volumetric source drives it to a value greater than 1, which is
# outside the range of the damper. At that point, the solution can
# no longer converge, and the model errors out with a failure to converge.
# The test verifies that the damper computes the correct value in the first
# nonlinear iteration when the solution exceeds the bounds.

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./source]
    type = BodyForce
    variable = u
    function = 't'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Dampers]
  [./bounding_value_damp]
    type = BoundingValueElementDamper
    min_value = 0.0
    max_value = 1.0
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  end_time = 3.0
  dt = 0.5
  dtmin = 0.5
  nl_max_its = 5
[]

test/tests/mesh/adapt/adapt_test_cycles.i

[Mesh]
  dim = 2
  file = square.e
  uniform_refine = 3
[]

[Variables]
  active = 'u v'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'udiff uconv uie vdiff'

  [./udiff]
    type = Diffusion
    variable = u
  [../]

  [./uconv]
    type = Convection
    variable = u
    velocity = '20 1 0'
  [../]

  [./uie]
    type = TimeDerivative
    variable = u
  [../]

  [./vdiff]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'uleft uright vleft vright'

  [./uleft]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./uright]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]

  [./vleft]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 1
  [../]

  [./vright]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 2
  dt = .1

  [./Adaptivity]
    refine_fraction = 0.3
    max_h_level = 7
    cycles_per_step = 2
  [../]
[]

[Outputs]
  file_base = out_cycles
  exodus = true
[]

modules/phase_field/test/tests/reconstruction/2phase_reconstruction4.i

#
# In this test we set the initial condition of a set of order parameters
# by pulling out the only grains from given EBSD data file that belong to a specified phase
#

[Problem]
  type = FEProblem
  solve = false
  kernel_coverage_check = false
[]

[Mesh]
  type = EBSDMesh
  filename = ebsd_40x40_2_phase.txt
[]

[GlobalParams]
  op_num = 6
  var_name_base = gr
[]

[UserObjects]
  [./ebsd_reader]
    type = EBSDReader
  [../]
  [./ebsd]
    type = PolycrystalEBSD
    coloring_algorithm = bt
    ebsd_reader = ebsd_reader
    phase = 2
    output_adjacency_matrix = true
  [../]
  [./grain_tracker]
    type = GrainTracker
    polycrystal_ic_uo = ebsd
    remap_grains = false
  [../]
[]

[AuxVariables]
  [./var_indices]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = ebsd
    [../]
  [../]
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/2d_moving_penetration/pl_test2tt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test2.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test2tt_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/tensile/small_deform_hard3_update_version.i

# checking for small deformation, with cubic hardening
# A single element is repeatedly stretched by in z direction
# tensile_strength is set to 1Pa, tensile_strength_residual = 0.5Pa, and limit value = 1E-5
# This allows the hardening of the tensile strength to be observed

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1.0
    value_residual = 0.5
    internal_0 = 0
    internal_limit = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.0
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1.0
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard3_update_version
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/porous_flow/test/tests/heat_advection/heat_advection_1d.i

# 1phase, heat advecting with a moving fluid
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 50
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./temp]
    initial_condition = 200
  [../]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = '1-x'
  [../]
[]

[BCs]
  [./pp0]
    type = DirichletBC
    variable = pp
    boundary = left
    value = 1
  [../]
  [./pp1]
    type = DirichletBC
    variable = pp
    boundary = right
    value = 0
  [../]
  [./spit_heat]
    type = DirichletBC
    variable = temp
    boundary = left
    value = 300
  [../]
  [./suck_heat]
    type = DirichletBC
    variable = temp
    boundary = right
    value = 200
  [../]
[]

[Kernels]
  [./mass_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./advection]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
  [./heat_advection]
    type = PorousFlowHeatAdvection
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.6
    alpha = 1.3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 100
      density0 = 1000
      viscosity = 4.4
      thermal_expansion = 0
      cv = 2
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.0
    density = 125
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./PS]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.01
  end_time = 0.6
[]

[VectorPostprocessors]
  [./T]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 51
    sort_by = x
    variable = temp
  [../]
[]

[Outputs]
  [./csv]
    type = CSV
    sync_times = '0.1 0.6'
    sync_only = true
  [../]
[]

test/tests/transfers/get_transfers_from_feproblem/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  # This test currently diffs when run in parallel with DistributedMesh enabled,
  # most likely due to the fact that it uses some geometric search stuff.
  # For more information, see #2121.
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[UserObjects]
  [./layered_average]
    type = GetTransferUserObject
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  nl_rel_tol = 1e-10

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub.i
  [../]
[]

[Transfers]
  [./nearest_node]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = nearest_node
  [../]
  [./mesh_function]
    type = MultiAppMeshFunctionTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = mesh_function
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cto18.i

# Jacobian check for nonlinear, multi-surface plasticity.
# Returns to the edge of the tensile yield surface
#
# Plasticity models:
# Tensile with strength = 1MPa softening to 0.5MPa in 2E-2 strain
#
# Lame lambda = 0.5GPa.  Lame mu = 1GPa
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]



[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./linesearch]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ld]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./constr_added]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./linesearch]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = linesearch
  [../]
  [./ld]
    type = MaterialRealAux
    property = plastic_linear_dependence_encountered
    variable = ld
  [../]
  [./constr_added]
    type = MaterialRealAux
    property = plastic_constraints_added
    variable = constr_added
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int0
    index = 0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int1
    index = 1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int2
    index = 2
  [../]
[]

[Postprocessors]
  [./max_int0]
    type = ElementExtremeValue
    variable = int0
    outputs = console
  [../]
  [./max_int1]
    type = ElementExtremeValue
    variable = int1
    outputs = console
  [../]
  [./max_int2]
    type = ElementExtremeValue
    variable = int2
    outputs = console
  [../]
  [./max_iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./av_linesearch]
    type = ElementAverageValue
    variable = linesearch
    outputs = 'console csv'
  [../]
  [./av_ld]
    type = ElementAverageValue
    variable = ld
    outputs = 'console csv'
  [../]
  [./av_constr_added]
    type = ElementAverageValue
    variable = constr_added
    outputs = 'console csv'
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console csv'
  [../]
[]


[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
  [./tensile]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = ts
    yield_function_tolerance = 1.0E-6  # Note larger value
    shift = 1.0E-6                     # Note larger value
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0.5E3 1E3'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-1 0.1 0.2  0.1 15 -0.3  0.2 -0.3 14'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-7

    plastic_models = 'tensile'
    max_NR_iterations = 5
    deactivation_scheme = 'safe'
    min_stepsize = 1
    tangent_operator = nonlinear
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]


[Outputs]
  file_base = cto18
  exodus = false
  csv = true
[]

test/tests/functions/image_function/subset.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  uniform_refine = 2
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file_base = stack/test
    file_suffix = png
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    origin = '0.25 0.25 0'
    dimensions = '0.5 0.5 0'
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

test/tests/kernels/vector_dot_dot/vector_test.i

# Tests calculation of first and second time derivative
# of a coupled vector variable in a material
# a_vec(x,y,z,t) = [t*(t*x + y), t*y, 0]
# a_vec_dot(x,y,z,t) = [2*t*x + y, y, 0]
# a_vec_dot_dot(x,y,z,t) = [2*x, 0, 0]
#
# IMPORTANT NOTE:
# Currently, this test produces a_vec_dot and a_vec_dot_dot that contains oscillations over time.
# This is a known by-product of Newmark Beta time integration (see the Newmark Beta documentation),
# but as of Summer 2019, there is no alternative time integrator in MOOSE that can dampen these
# oscillations. This test is used as coverage for the function call coupledVectorDotDot.

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 4
  ymin = 0
  ymax = 4
  nx = 8
  ny = 8
[]

[Functions]
  [a_fn]
    type = ParsedVectorFunction
    value_x = 't * (t * x + y)'
    value_y = 't * y'
    value_z = 0
  []
[]

[AuxVariables]
  [a]
    family = LAGRANGE_VEC
    order = FIRST
  []
[]

[AuxKernels]
  [a_ak]
    type = VectorFunctionAux
    variable = a
    function = a_fn
  []
[]

[Materials]
  [cm]
    type = VectorCoupledValuesMaterial
    variable = a
  []
[]

[Variables]
  [u]   # u is zero
    family = LAGRANGE_VEC
    order = FIRST
  []
[]

[Kernels]
  [td]
    type = VectorTimeDerivative
    variable = u
  []
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 3

  [TimeIntegrator]
    type = NewmarkBeta
  []
[]

[Outputs]
  [./out]
    type = Exodus
    output_material_properties = true
    show_material_properties = 'a_value a_dot a_dot_dot a_dot_du a_dot_dot_du'
  [../]
[]

modules/porous_flow/test/tests/chemistry/except2.i

# Exception test.
# Incorrect number of phases

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 2
    number_fluid_components = 3
    number_aqueous_equilibrium = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1E2
  [../]
  [./eqm_k1]
    initial_condition = 1E-2
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'a b'
    num_reactions = 2
    equilibrium_constants = 'eqm_k0 eqm_k1'
    primary_activity_coefficients = '1 1'
    secondary_activity_coefficients = '1 1'
    reactions = '2 0
                 1 1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/richards/test/tests/gravity_head_1/gh_fu_22.i

# investigating validity of immobile saturation
# 50 elements, full upwinding

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 50
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGnone
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1 10 100 1000 10000'
    x = '0 10 100 1000 10000'
  [../]
[]


[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.3
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -1.0
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E0
  end_time = 1E5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = gh_fu_22
  execute_on = 'timestep_end final'
  interval = 10000
  exodus = true
[]

modules/xfem/test/tests/moving_interface/verification/1D_rz_homog1mat.i

# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality:                                   quasi-1D
# Coordinate System:                                      rz
# Material Numbers/Types:   homogeneous 1 material, 2 region
# Element Order:                                         1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
#   A simple transient heat transfer problem in cylindrical coordinates designed
#   with the Method of Manufactured Solutions. This problem was developed to
#   verify XFEM performance in the presence of a moving interface for linear
#   element models that can be exactly evaluated by FEM/Moose. Both the
#   temperature solution and level set function are designed to be linear to
#   attempt to minimize error between the Moose/exact solution and XFEM results.
#   Thermal conductivity is a single, constant value at all points in the system.
# Results:
#   The temperature at the left boundary (x=1) exhibits the largest difference
#   between the FEM/Moose solution and XFEM results. We present the XFEM results
#   at this location with 10 digits of precision:
#     Time    Expected Temperature    XFEM Calculated Temperature
#      0.2                  440         440
#      0.4                  480         480.0008118
#      0.6                  520         520.0038529
#      0.8                  560         560.0089177
#      1.0                  600         600.0133344
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 1
  xmin = 1.0
  xmax = 2.0
  ymin = 0.0
  ymax = 0.5
  elem_type = QUAD4
[]

[XFEM]
  qrule = moment_fitting
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
    heal_always = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./heat_cond]
    type = MatDiffusion
    variable = u
    diffusivity = diffusion_coefficient
  [../]
  [./vol_heat_src]
    type = BodyForce
    variable = u
    function = src_func
  [../]
  [./mat_time_deriv]
    type = TestMatTimeDerivative
    variable = u
    mat_prop_value = rhoCp
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    geometric_cut_userobject = 'level_set_cut_uo'
    use_penalty = true
    alpha = 1e5
  [../]
[]

[Functions]
  [./src_func]
    type = ParsedFunction
    value = '10*(-200*x+400) + 200*1.5*t/x'
  [../]
  [./neumann_func]
    type = ParsedFunction
    value = '1.5*200*t'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = '2.04 - x - 0.2*t'
  [../]
[]

[Materials]
  [./mat_time_deriv_prop]
    type = GenericConstantMaterial
    prop_names = 'rhoCp'
    prop_values = 10
  [../]
  [./therm_cond_prop]
    type = GenericConstantMaterial
    prop_names = 'diffusion_coefficient'
    prop_values = 1.5
  [../]
[]

[BCs]
  [./left_u]
    type = FunctionNeumannBC
    variable = u
    boundary = 'left'
    function = neumann_func
  [../]
  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 400
  [../]
[]

[ICs]
  [./u_ic]
    type = ConstantIC
    value = 400
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_tol = 1.0e-6
  nl_max_its = 15
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-9

  start_time = 0.0
  dt = 0.2
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = 'initial timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/internal_volume/rz.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a space considering
#   an embedded volume inside.
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total volume
#   is 7.
#
[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = meshes/rz.e
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e4
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    volumetric_locking_correction = true
    incremental = true
    strain = FINITE
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2'
    value = 0.0
  [../]

  [./Pressure]
    [./fred]
      boundary = 3
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 2
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/peridynamics/test/tests/jacobian_check/2D_mechanics_smallstrain_NOSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputePlaneSmallStrainNOSPD
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_2phasePS.i

# Pressure pulse in 1D with 2 phases, 2components - transient

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./ppwater]
    initial_condition = 2e6
  [../]
  [./sgas]
    initial_condition = 0.3
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
  [./ppgas]
    family = MONOMIAL
    order = FIRST
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    variable = ppwater
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    variable = sgas
    fluid_component = 1
  [../]
[]

[AuxKernels]
  [./ppgas]
    type = PorousFlowPropertyAux
    property = pressure
    phase = 1
    variable = ppgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 1e5
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 2e7
      density0 = 1
      thermal_expansion = 0
      viscosity = 1e-5
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-15 0 0 0 1e-15 0 0 0 1e-15'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 1
  [../]
[]

[BCs]
  [./leftwater]
    type = DirichletBC
    boundary = left
    value = 3e6
    variable = ppwater
  [../]
  [./rightwater]
    type = DirichletBC
    boundary = right
    value = 2e6
    variable = ppwater
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-20 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1e3
  end_time = 1e4
[]

[VectorPostprocessors]
  [./pp]
    type = LineValueSampler
    sort_by = x
    variable = 'ppwater ppgas'
    start_point = '0 0 0'
    end_point = '100 0 0'
    num_points = 11
  [../]
[]

[Outputs]
  file_base = pressure_pulse_1d_2phasePS
  print_linear_residuals = false
  [./csv]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/outputs/perf_graph/multi_app/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  perf_graph = true
[]

[MultiApps]
  [./sub_app]
    positions = '0 0 0'
    type = TransientMultiApp
    input_files = 'sub.i'
    app_type = MooseTestApp
  [../]
[]

modules/tensor_mechanics/test/tests/tensile/small_deform1.i

# checking for small deformation
# A single element is stretched by 1E-6m in z direction, and by small amounts in x and y directions
# stress_zz = Youngs Modulus*Strain = 2E6*1E-6 = 2 Pa
# tensile_strength is set to 1Pa
# Then the final stress should return to the yeild surface and the maximum principal stress value should be 1pa.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.2E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./mc]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    yield_function_tolerance = 1E-6
    tensile_tip_smoother = 0.0
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '1 2 3 2 -4 -5 3 -5 10'
    debug_jac_at_pm = 0.8
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-8
    debug_pm_change = 1E-5
    debug_intnl_change = 1E-5
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform1
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/solid_mechanics/test/tests/generalized_plane_strain/weak_planestress.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = square.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./strain_zz]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./aux_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegralSM
    tensor = stress
    index = 2
  [../]
  [./min_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = min
  [../]
  [./max_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = max
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    temp = temp
  [../]
[]

[Kernels]
  [./solid_z]
    type = OutOfPlaneStress
    variable = strain_zz
    save_in = saved_z
    disp_x = disp_x
    disp_y = disp_y
    temp = temp
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]

  [./strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xx
    index = 0
  [../]
  [./strain_xy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xy
    index = 3
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_yy
    index = 1
  [../]
  [./strain_zz]
    type = MaterialTensorAux
    tensor = total_strain
    variable = aux_strain_zz
    index = 2
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0     1  100'
    y='0  0.00 0.00'
  [../]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    thermal_expansion = 0.02
    stress_free_temperature = 0.5
    temp = temp
    formulation = PlaneStrain
    strain_zz = strain_zz
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none


# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

test/tests/auxkernels/solution_scalar_aux/build.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./a]
    family = SCALAR
    order = FIRST
  [../]
[]

[Functions]
  [./a_fn]
    type = ParsedFunction
    value = '4 - t'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxScalarKernels]
  [./a_sk]
    type = FunctionScalarAux
    variable = a
    function = a_fn
    execute_on = 'initial timestep_begin'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 2
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  nl_rel_tol = 1e-10
  dt = 1
  num_steps = 3
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/infiltration_and_drainage/bw01.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 400
  ny = 1
  xmin = -10
  xmax = 10
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-5 1E-2 1E-2 1E-1'
    x = '0 1E-5 1 10'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = pressure
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureBW
    Sn = 0.0
    Ss = 1.0
    C = 1.5
    las = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 4
      density0 = 10
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pressure
    capillary_pressure = pc
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityBW
    Sn = 0.0
    Ss = 1.0
    Kn = 0
    Ks = 1
    C = 1.5
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.25
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0  0 1 0  0 0 1'
  [../]
[]

[Variables]
  [./pressure]
    initial_condition = -9E2
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pressure
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pressure
    gravity = '-0.1 0 0'
  [../]
[]

[AuxVariables]
  [./SWater]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./SWater]
    type = MaterialStdVectorAux
    property = PorousFlow_saturation_qp
    index = 0
    variable = SWater
  [../]
[]

[BCs]
  [./recharge]
    type = PorousFlowSink
    variable = pressure
    boundary = right
    flux_function = -1.25 # corresponds to Rstar being 0.5 because i have to multiply by density*porosity
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10      1E-10      10000'
  [../]
[]

[VectorPostprocessors]
  [./swater]
    type = LineValueSampler
    variable = SWater
    start_point = '-10 0 0'
    end_point = '10 0 0'
    sort_by = x
    num_points = 101
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 8

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = bw01
  sync_times = '0.5 2 8'
  [./exodus]
    type = Exodus
    sync_only = true
  [../]
  [./along_line]
    type = CSV
    sync_only = true
  [../]
[]

test/tests/dirackernels/multiplicity/multiplicity.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
  elem_type = QUAD4
  uniform_refine = 2
[]

[Variables]
  [./u1]
  [../]
  [./u2]
  [../]
  [./u3]
  [../]
[]

[Kernels]
  [./diff1]
    type = Diffusion
    variable = u1
  [../]
  [./diff2]
    type = Diffusion
    variable = u2
  [../]
  [./diff3]
    type = Diffusion
    variable = u3
  [../]

  [./dt1]
    type = TimeDerivative
    variable = u1
  [../]
  [./dt2]
    type = TimeDerivative
    variable = u2
  [../]
  [./dt3]
    type = TimeDerivative
    variable = u3
  [../]
[]

[DiracKernels]
  [./material_source1]
    type = MaterialMultiPointSource
    variable = u1
    points = '0.2 0.3 0.0
              0.7 0.5 0.0'
  [../]
  [./material_source2]
    type = MaterialMultiPointSource
    variable = u2
    points = '0.2 0.3 0.0
              0.2 0.3 0.0'
  [../]
  [./material_source3]
    type = MaterialMultiPointSource
    variable = u3
    drop_duplicate_points = false
    points = '0.2 0.3 0.0
              0.2 0.3 0.0'
  [../]
[]

[Postprocessors]
  [./u1]
    type = ElementIntegralVariablePostprocessor
    variable = u1
  [../]
  [./u2]
    type = ElementIntegralVariablePostprocessor
    variable = u2
  [../]
  [./u3]
    type = ElementIntegralVariablePostprocessor
    variable = u3
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    prop_names = matp
    prop_values = 1.0
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  num_steps = 1
[]

[Outputs]
  csv = true
  print_linear_residuals = false
[]

test/tests/userobjects/layered_average/layered_average_bounding_block.i

#
# The mesh consists of two blocks.  Block 1 has a height and width of 1 whereas
# block 2 has a height of 2 and width of 1. A gap of 1 exists between the two
# blocks in the x direction.  Elements are 0.25 high and 1 wide.  The solution
# in block 1 is u = y and block 2 is u = 4y.
#
# Two sets of LayeredAverage values are computed.  In both cases, four
# layers are used.  In 'bounding_block1', the LayeredAverage values are computed
# on block 1 using the bounds (dimensions of block 2). In 'bounding_block2',
# the LayeredAverage values are computed on block 2 using the bounds (dimensions
# of block 1).
#
# In 'bounding_block1', since the layers are defined by the dimensions of block
# 2 only two layers appear in block one.  The values in block 1 are thus:
# 0.25 for 0<y<0.5 and 0.75 for 0.5<y<1.
#
# In 'bounding_block2', since the layers are defined by the dimensions of block
# 1 four layers appear in block two. Any place over and above the top of the
# uppermost layer is included in the uppermost layer.  Therefore, the first 3
# layers are 1/4 of the height of block 1 (0.25) whereas the 4th layer has a
# height of 1/4 of block 1 (0.25) plus the additional region in block 2 outside
# the bounds of block 1 (1.0) for a total height of 1.24.
# The values in block 2 are thus:
# 0.5 from 0<y<0.25, 1.5 from 0.25<y<0.5, 2.5 from 0.5<y<0.75, and 5.5 from
# y>0.75.
#
#

[Mesh]
  file = layered_average_bounding_block.e
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./bounding_block1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./bounding_block2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./bounding_block1]
    type = SpatialUserObjectAux
    block = 1
    variable = bounding_block1
    execute_on = timestep_end
    user_object = bounding_block1
  [../]
  [./bounding_block2]
    type = SpatialUserObjectAux
    block = 2
    variable = bounding_block2
    execute_on = timestep_end
    user_object = bounding_block2
  [../]
[]

[BCs]
  [./ll]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
  [./lu]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
  [./ul]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]
  [./uu]
    type = DirichletBC
    variable = u
    boundary = 4
    value = 8
  [../]
[]

[UserObjects]
  [./bounding_block1]
    type = LayeredAverage
    direction = y
    num_layers = 4
    variable = u
    execute_on = linear
    block = 1
    layer_bounding_block = 2
  [../]
  [./bounding_block2]
    type = LayeredAverage
    direction = y
    num_layers = 4
    block = 2
    layer_bounding_block = 1
    variable = u
    execute_on = linear
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/sinks/s07.i

# apply a sink flux on just one component of a 3-component system and observe the correct behavior
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp frac0 frac1'
    number_fluid_phases = 1
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1.1
  [../]
[]

[Variables]
  [./pp]
  [../]
  [./frac0]
    initial_condition = 0.1
  [../]
  [./frac1]
    initial_condition = 0.6
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = y
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = frac0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = frac1
  [../]
  [./mass2]
    type = PorousFlowMassTimeDerivative
    fluid_component = 2
    variable = pp
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.3
      density0 = 1.1
      thermal_expansion = 0
      viscosity = 1.1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'frac0 frac1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0.2 0 0 0 0.1 0 0 0 0.1'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[AuxVariables]
  [./flux_out]
  [../]
[]

[Functions]
  [./mass1_00]
    type = ParsedFunction
    value = 'frac*vol*por*dens0*exp(pp/bulk)*pow(1+pow(-al*pp,1.0/(1-m)),-m)'
    vars = 'frac  vol  por dens0 pp bulk al m'
    vals = 'f1_00 0.25 0.1 1.1  p00 1.3 1.1 0.5'
  [../]
  [./expected_mass_change1_00]
    type = ParsedFunction
    value = 'frac*fcn*area*dt'
    vars = 'frac fcn area dt'
    vals = 'f1_00 6  0.5  1E-3'
  [../]
  [./mass1_00_expect]
    type = ParsedFunction
    value = 'mass_prev-mass_change'
    vars = 'mass_prev mass_change'
    vals = 'm1_00_prev  del_m1_00'
  [../]
  [./mass1_01]
    type = ParsedFunction
    value = 'frac*vol*por*dens0*exp(pp/bulk)*pow(1+pow(-al*pp,1.0/(1-m)),-m)'
    vars = 'frac  vol  por dens0 pp bulk al m'
    vals = 'f1_01 0.25 0.1 1.1  p01 1.3 1.1 0.5'
  [../]
  [./expected_mass_change1_01]
    type = ParsedFunction
    value = 'frac*fcn*area*dt'
    vars = 'frac fcn area dt'
    vals = 'f1_01 6  0.5  1E-3'
  [../]
  [./mass1_01_expect]
    type = ParsedFunction
    value = 'mass_prev-mass_change'
    vars = 'mass_prev mass_change'
    vals = 'm1_01_prev  del_m1_01'
  [../]
[]

[Postprocessors]
  [./f1_00]
    type = PointValue
    point = '0 0 0'
    variable = frac1
    execute_on = 'initial timestep_end'
  [../]
  [./flux_00]
    type = PointValue
    point = '0 0 0'
    variable = flux_out
    execute_on = 'initial timestep_end'
  [../]
  [./p00]
    type = PointValue
    point = '0 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m1_00]
    type = FunctionValuePostprocessor
    function = mass1_00
    execute_on = 'initial timestep_end'
  [../]
  [./m1_00_prev]
    type = FunctionValuePostprocessor
    function = mass1_00
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./del_m1_00]
    type = FunctionValuePostprocessor
    function = expected_mass_change1_00
    execute_on = 'timestep_end'
    outputs = 'console'
  [../]
  [./m1_00_expect]
    type = FunctionValuePostprocessor
    function = mass1_00_expect
    execute_on = 'timestep_end'
  [../]
  [./f1_01]
    type = PointValue
    point = '0 1 0'
    variable = frac1
    execute_on = 'initial timestep_end'
  [../]
  [./flux_01]
    type = PointValue
    point = '0 1 0'
    variable = flux_out
    execute_on = 'initial timestep_end'
  [../]
  [./p01]
    type = PointValue
    point = '0 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m1_01]
    type = FunctionValuePostprocessor
    function = mass1_01
    execute_on = 'initial timestep_end'
  [../]
  [./m1_01_prev]
    type = FunctionValuePostprocessor
    function = mass1_01
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./del_m1_01]
    type = FunctionValuePostprocessor
    function = expected_mass_change1_01
    execute_on = 'timestep_end'
    outputs = 'console'
  [../]
  [./m1_01_expect]
    type = FunctionValuePostprocessor
    function = mass1_01_expect
    execute_on = 'timestep_end'
  [../]
  [./f1_11]
    type = PointValue
    point = '1 1 0'
    variable = frac1
    execute_on = 'initial timestep_end'
  [../]
  [./flux_11]
    type = PointValue
    point = '1 1 0'
    variable = flux_out
    execute_on = 'initial timestep_end'
  [../]
  [./p11]
    type = PointValue
    point = '1 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./flux]
    type = PorousFlowSink
    boundary = 'left'
    variable = frac1
    use_mobility = false
    use_relperm = false
    mass_fraction_component = 1
    fluid_phase = 0
    flux_function = 6
    save_in = flux_out
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_max_it -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu 10 NONZERO 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-3
  end_time = 0.01
  nl_rel_tol = 1E-12
  nl_abs_tol = 1E-12
[]

[Outputs]
  file_base = s07
  [./console]
    type = Console
    execute_on = 'nonlinear linear'
  [../]
  [./csv]
    type = CSV
    execute_on = 'timestep_end'
  [../]
[]

modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialAnisotropy.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  xmin = -2
  xmax = 2
  ymin = -2
  ymax = 2
[]

# enable_jit set to false in many materials to make this test start up faster.
# It is recommended to set enable_jit = true or just remove these lines for
# production runs with this model
[GlobalParams]
  radius = 1.0
  int_width = 0.8
  x1 = 0
  y1 = 0
  derivative_order = 2
  enable_jit = false
[]

[Variables]
  [./w]
  [../]
  [./etaa0]
  [../]
  [./etab0]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    v = 'etaa0 etab0'
  [../]
[]

[ICs]
  [./w]
    type = SmoothCircleIC
    variable = w
    # note w = A*(c-cleq), A = 1.0, cleq = 0.0 ,i.e., w = c (in the matrix/liquid phase)
    outvalue = -4.0
    invalue = 0.0
  [../]
  [./etaa0]
    type = SmoothCircleIC
    variable = etaa0
    #Solid phase
    outvalue = 0.0
    invalue = 1.0
  [../]
  [./etab0]
    type = SmoothCircleIC
    variable = etab0
    #Liquid phase
    outvalue = 1.0
    invalue = 0.0
  [../]
[]

[BCs]
  [./Periodic]
    [./w]
      variable = w
      auto_direction = 'x y'
    [../]
    [./etaa0]
      variable = etaa0
      auto_direction = 'x y'
    [../]
    [./etab0]
      variable = etab0
      auto_direction = 'x y'
    [../]
  [../]
[]

[Kernels]
# Order parameter eta_alpha0
  [./ACa0_bulk]
    type = ACGrGrMulti
    variable = etaa0
    v =           'etab0'
    gamma_names = 'gab'
  [../]
  [./ACa0_sw]
    type = ACSwitching
    variable = etaa0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etab0 w'
  [../]
  [./ACa0_int1]
    type = ACInterface2DMultiPhase1
    variable = etaa0
    etas = 'etab0'
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
    d2kappadgrad_etaa_name = d2kappadgrad_etaa
  [../]
  [./ACa0_int2]
    type = ACInterface2DMultiPhase2
    variable = etaa0
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
  [../]
  [./ea0_dot]
    type = TimeDerivative
    variable = etaa0
  [../]
# Order parameter eta_beta0
  [./ACb0_bulk]
    type = ACGrGrMulti
    variable = etab0
    v =           'etaa0'
    gamma_names = 'gab'
  [../]
  [./ACb0_sw]
    type = ACSwitching
    variable = etab0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etaa0 w'
  [../]
  [./ACb0_int1]
    type = ACInterface2DMultiPhase1
    variable = etab0
    etas = 'etaa0'
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
    d2kappadgrad_etaa_name = d2kappadgrad_etab
  [../]
  [./ACb0_int2]
    type = ACInterface2DMultiPhase2
    variable = etab0
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
  [../]
  [./eb0_dot]
    type = TimeDerivative
    variable = etab0
  [../]
#Chemical potential
  [./w_dot]
    type = SusceptibilityTimeDerivative
    variable = w
    f_name = chi
  [../]
  [./Diffusion]
    type = MatDiffusion
    variable = w
    diffusivity = Dchi
  [../]
  [./coupled_etaa0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etaa0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0'
  [../]
  [./coupled_etab0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etab0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0'
  [../]
[]

[Materials]
  [./ha]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = ha
    all_etas = 'etaa0 etab0'
    phase_etas = 'etaa0'
  [../]
  [./hb]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = hb
    all_etas = 'etaa0 etab0'
    phase_etas = 'etab0'
  [../]
  [./omegaa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegaa
    material_property_names = 'Vm ka caeq'
    function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
  [../]
  [./omegab]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegab
    material_property_names = 'Vm kb cbeq'
    function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq'
  [../]
  [./rhoa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhoa
    material_property_names = 'Vm ka caeq'
    function = 'w/Vm^2/ka + caeq/Vm'
  [../]
  [./rhob]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhob
    material_property_names = 'Vm kb cbeq'
    function = 'w/Vm^2/kb + cbeq/Vm'
  [../]
  [./kappaa]
    type = InterfaceOrientationMultiphaseMaterial
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
    d2kappadgrad_etaa_name = d2kappadgrad_etaa
    etaa = etaa0
    etab = etab0
    outputs = exodus
    output_properties = 'kappaa dkappadgrad_etaa'
  [../]
  [./kappab]
    type = InterfaceOrientationMultiphaseMaterial
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
    d2kappadgrad_etaa_name = d2kappadgrad_etab
    etaa = etab0
    etab = etaa0
    outputs = exodus
    output_properties = 'kappab dkappadgrad_etab'
  [../]
  [./const]
    type = GenericConstantMaterial
    prop_names =  'L   D    chi  Vm   ka    caeq kb    cbeq  gab mu'
    prop_values = '1.0 1.0  0.1  1.0  10.0  0.1  10.0  0.9   4.5 10.0'
  [../]
  [./Mobility]
    type = ParsedMaterial
    f_name = Dchi
    material_property_names = 'D chi'
    function = 'D*chi'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  l_tol = 1.0e-5
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1e-12
  num_steps = 2
  dt = 0.001
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/explicit-euler/ee-2d-linear-adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = (x+y)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*(x+y)
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
    lumping = true
    implicit = true
  [../]

  [./diff]
    type = Diffusion
    variable = u
    implicit = false
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
    implicit = false
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
    implicit = true
  [../]
[]

[Adaptivity]
  steps = 1
  marker = box
  max_h_level = 2
  [./Markers]
    [./box]
      bottom_left = '-0.4 -0.4 0'
      inside = refine
      top_right = '0.4 0.4 0'
      outside = do_nothing
      type = BoxMarker
    [../]
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'explicit-euler'

  start_time = 0.0
  num_steps = 4
  dt = 0.005
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update34_cosserat.i

# Cosserat version of Capped Mohr Columb (using StressUpdate)
# Compressive + shear failure, starting from a non-symmetric stress state

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E2
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 4E1
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1E3
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 2.0
    joint_shear_stiffness = 1.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-100.1 -0.1 0.2  -0.1 -0.9 0  0.2 0.1 -1.1'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombCosseratStressUpdate
    host_youngs_modulus = 1E3
    host_poissons_ratio = 0.25
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/glued_contact/glued_contact_test.i

[Mesh]
  file = glued_contact_test.e
[]

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.5001'
  [../]

  [./lateral]
    type = PiecewiseLinear
    x = '0 1 2 3'
    y = '0 0 1 0'
    scale_factor = 0.5
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = glued
    formulation = kinematic
    system = Constraint
  [../]
[]

[BCs]
  [./bottom_lateral]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = lateral
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = up
  [../]

  [./bottom_out]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff1_strain]
    type= ComputeFiniteStrain
    block = '1'
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]

  [./stiffStuff2]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff2_strain]
    type= ComputeFiniteStrain
    block = '2'
  [../]
  [./stiffStuff2_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  #petsc_options_iname = '-pc_type -pc_hypre_type -snes_type -snes_ls -snes_linesearch_type -ksp_gmres_restart'
  #petsc_options_value = 'hypre    boomeramg      ls         basic    basic                    101'
  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'ilu      101'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-8
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 10
  dt = 0.1
  num_steps = 30

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Postprocessors]
  active = ''
  [./resid]
    type = Residual
  [../]
  [./iters]
    type = NumNonlinearIterations
  [../]
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/outputs/displacement/displaced_eq_transient_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 5
  ny = 5
  elem_type = QUAD4

  displacements = 'u v'
[]

[Functions]
  [./right_u]
    type = ParsedFunction
    value = 0.1*t
  [../]

  [./fn_v]
    type = ParsedFunction
    value = (x+1)*y*0.1*t
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./td_u]
    type = TimeDerivative
    variable = u
    use_displaced_mesh = true
  [../]
  [./diff_u]
    type = Diffusion
    variable = u
    use_displaced_mesh = true
  [../]

  [./td_v]
    type = TimeDerivative
    variable = v
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]
  [./right_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 1
    function = right_u
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '0 2'
    function = fn_v
  [../]
[]

[Executioner]
  type = Transient

  dt = 0.1
  start_time = 0
  num_steps = 10


  solve_type = 'PJFNK'
[]

[Outputs]
  [./out_displaced]
    type = Exodus
    use_displaced = true
  [../]
[]

modules/richards/test/tests/jacobian_1/jn16.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn16
  exodus = false
[]

modules/porous_flow/test/tests/newton_cooling/nc01.i

# Newton cooling from a bar.  1-phase transient
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1000
  ny = 1
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pressure'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1e-5
  [../]
[]

[Variables]
  [./pressure]
    initial_condition = 2E6
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pressure
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    gravity = '0 0 0'
    variable = pressure
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1e6
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey # irrelevant in this fully-saturated situation
    n = 2
    phase = 0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 2E6
  [../]
  [./newton]
    type = PorousFlowPiecewiseLinearSink
    variable = pressure
    boundary = right
    pt_vals = '0 100000 200000 300000 400000 500000 600000 700000 800000 900000 1000000 1100000 1200000 1300000 1400000 1500000 1600000 1700000 1800000 1900000 2000000'
    multipliers = '0. 5.6677197748570516e-6 0.000011931518841831313 0.00001885408740732065 0.000026504708864284114 0.000034959953203725676 0.000044304443352900224 0.00005463170211001232 0.00006604508815181467 0.00007865883048198513 0.00009259917167338928 0.00010800563134618119 0.00012503240252705603 0.00014384989486488752 0.00016464644014777016 0.00018763017719085535 0.0002130311349595711 0.00024110353477682344 0.00027212833465544285 0.00030641604122040985 0.00034430981736352295'
    use_mobility = false
    use_relperm = false
    fluid_phase = 0
    flux_function = 1
  [../]
[]

[VectorPostprocessors]
  [./porepressure]
    type = LineValueSampler
    variable = pressure
    start_point = '0 0.5 0'
    end_point = '100 0.5 0'
    sort_by = x
    num_points = 20
    execute_on = timestep_end
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-15 10000'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1E8
  dt = 1E6
[]

[Outputs]
  file_base = nc01
  [./along_line]
    type = CSV
    execute_vector_postprocessors_on = final
  [../]
[]

test/tests/controls/output/controllable.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  elem_type = QUAD4
  uniform_refine = 4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[DiracKernels]
  [./test_object]
    type = MaterialPointSource
    point = '0.5 0.5 0'
    variable = u
  [../]
[]

[Materials]
  [./mat]
    type = GenericConstantMaterial
    prop_names = 'matp'
    prop_values = '1'
    block = 0
  [../]
[]

[Postprocessors]
  [./test_object]
    type = FunctionValuePostprocessor
    function = '2*(x+y)'
    point = '0.5 0.5 0'
  [../]
  [./other_point_test_object]
    type = FunctionValuePostprocessor
    function = '3*(x+y)'
    point = '0.5 0.5 0'
  [../]
[]

[Outputs]
  [./controls]
    type = ControlOutput
    clear_after_output = false
  [../]
[]

[Controls]
  [./point_control]
    type = TestControl
    test_type = 'point'
    parameter = '*/*/point'
    execute_on = 'initial'
  [../]
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/sm/frictionless_penalty_sm.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2. The gold file is run
#  on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/combined/examples/phase_field-mechanics/kks_mechanics_VTS.i

# KKS phase-field model coupled with elasticity using the Voigt-Taylor scheme as
# described in L.K. Aagesen et al., Computational Materials Science, 140, 10-21 (2017)
# Original run #170329e

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 640
  ny = 1
  nz = 1
  xmin = -10
  xmax = 10
  ymin = 0
  ymax = 0.03125
  zmin = 0
  zmax = 0.03125
  elem_type = HEX8
[]


[Variables]
  # order parameter
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]

  # solute concentration
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]

  # chemical potential
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]

  # solute phase concentration (matrix)
  [./cm]
    order = FIRST
    family = LAGRANGE
  [../]
  # solute phase concentration (precipitate)
  [./cp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./eta_ic]
    variable = eta
    type = FunctionIC
    function = ic_func_eta
    block = 0
  [../]
  [./c_ic]
    variable = c
    type = FunctionIC
    function = ic_func_c
    block = 0
  [../]
  [./w_ic]
    variable = w
    type = ConstantIC
    value = 0.00991
    block = 0
  [../]
  [./cm_ic]
    variable = cm
    type = ConstantIC
    value = 0.131
    block = 0
  [../]
  [./cp_ic]
    variable = cp
    type = ConstantIC
    value = 0.236
    block = 0
  [../]
[]

[Functions]
  [./ic_func_eta]
    type = ParsedFunction
    value = '0.5*(1.0+tanh((x)/delta_eta/sqrt(2.0)))'
    vars = 'delta_eta'
    vals = '0.8034'
  [../]
  [./ic_func_c]
    type = ParsedFunction
    value = '0.2388*(0.5*(1.0+tanh(x/delta/sqrt(2.0))))^3*(6*(0.5*(1.0+tanh(x/delta/sqrt(2.0))))^2-15*(0.5*(1.0+tanh(x/delta/sqrt(2.0))))+10)+0.1338*(1-(0.5*(1.0+tanh(x/delta/sqrt(2.0))))^3*(6*(0.5*(1.0+tanh(x/delta/sqrt(2.0))))^2-15*(0.5*(1.0+tanh(x/delta/sqrt(2.0))))+10))'
    vars = 'delta'
    vals = '0.8034'
  [../]
  [./psi_eq_int]
    type = ParsedFunction
    value = 'volume*psi_alpha'
    vars = 'volume psi_alpha'
    vals = 'volume psi_alpha'
  [../]
  [./gamma]
    type = ParsedFunction
    value = '(psi_int - psi_eq_int) / dy / dz'
    vars = 'psi_int psi_eq_int dy       dz'
    vals = 'psi_int psi_eq_int 0.03125  0.03125'
  [../]
[]

[AuxVariables]
  [./sigma11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sigma22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sigma33]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e12]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e33]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_el11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_el12]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_el22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_el]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eigen_strain00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./Fglobal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./psi]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./matl_sigma11]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = sigma11
  [../]
  [./matl_sigma22]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = sigma22
  [../]
  [./matl_sigma33]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = sigma33
  [../]
  [./matl_e11]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 0
    variable = e11
  [../]
  [./matl_e12]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 1
    variable = e12
  [../]
  [./matl_e22]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
    variable = e22
  [../]
  [./matl_e33]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 2
    index_j = 2
    variable = e33
  [../]
  [./f_el]
    type = MaterialRealAux
    variable = f_el
    property = f_el_mat
    execute_on = timestep_end
  [../]
  [./GlobalFreeEnergy]
    variable = Fglobal
    type = KKSGlobalFreeEnergy
    fa_name = fm
    fb_name = fp
    w = 0.0264
    kappa_names = kappa
    interfacial_vars = eta
  [../]
  [./psi_potential]
    variable = psi
    type = ParsedAux
    args = 'Fglobal w c f_el sigma11 e11'
    function = 'Fglobal - w*c + f_el - sigma11*e11'
  [../]
[]


[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0
  [../]
  [./front_y]
    type = DirichletBC
    variable = disp_y
    boundary = front
    value = 0
  [../]
  [./back_y]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value = 0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0
  [../]
[]

[Materials]
  # Chemical free energy of the matrix
  [./fm]
    type = DerivativeParsedMaterial
    f_name = fm
    args = 'cm'
    function = '6.55*(cm-0.13)^2'
  [../]
# Elastic energy of the matrix
  [./elastic_free_energy_m]
    type = ElasticEnergyMaterial
    base_name = matrix
    f_name = fe_m
    args = ' '
    outputs = exodus
  [../]
# Total free energy of the matrix
  [./Total_energy_matrix]
    type = DerivativeSumMaterial
    f_name = f_total_matrix
    sum_materials = 'fm fe_m'
    args = 'cm'
  [../]

  # Free energy of the precipitate phase
  [./fp]
    type = DerivativeParsedMaterial
    f_name = fp
    args = 'cp'
    function = '6.55*(cp-0.235)^2'
  [../]

# Elastic energy of the precipitate
  [./elastic_free_energy_p]
    type = ElasticEnergyMaterial
    base_name = ppt
    f_name = fe_p
    args = ' '
    outputs = exodus
  [../]

# Total free energy of the precipitate
  [./Total_energy_ppt]
    type = DerivativeSumMaterial
    f_name = f_total_ppt
    sum_materials = 'fp fe_p'
    args = 'cp'
  [../]

  # Total elastic energy
    [./Total_elastic_energy]
      type = DerivativeTwoPhaseMaterial
      eta = eta
      f_name = f_el_mat
      fa_name = fe_m
      fb_name = fe_p
      outputs = exodus
      W = 0
    [../]

  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'M   L   kappa     misfit'
    prop_values = '0.7 0.7 0.01704   0.00377'
  [../]

  #Mechanical properties
  [./Stiffness_matrix]
    type = ComputeElasticityTensor
    C_ijkl = '103.3 74.25 74.25 103.3 74.25 103.3 46.75 46.75 46.75'
    base_name = matrix
    fill_method = symmetric9
  [../]
  [./Stiffness_ppt]
    type = ComputeElasticityTensor
    C_ijkl = '100.7 71.45 71.45 100.7 71.45 100.7 50.10 50.10 50.10'
    base_name = ppt
    fill_method = symmetric9
  [../]
  [./stress_matrix]
    type = ComputeLinearElasticStress
    base_name = matrix
  [../]
  [./stress_ppt]
    type = ComputeLinearElasticStress
    base_name = ppt
  [../]
  [./strain_matrix]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
    base_name = matrix
  [../]
  [./strain_ppt]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
    base_name = ppt
    eigenstrain_names = 'eigenstrain_ppt'
  [../]
  [./eigen_strain]
    type = ComputeEigenstrain
    base_name = ppt
    eigen_base = '1 1 1 0 0 0'
    prefactor = misfit
    eigenstrain_name = 'eigenstrain_ppt'
  [../]
  [./global_stress]
    type = TwoPhaseStressMaterial
    base_A = matrix
    base_B = ppt
  [../]
  [./global_strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]

  # enforce c = (1-h(eta))*cm + h(eta)*cp
  [./PhaseConc]
    type = KKSPhaseConcentration
    ca       = cm
    variable = cp
    c        = c
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotVacancies]
    type = KKSPhaseChemicalPotential
    variable = cm
    cb       = cp
    fa_name  = f_total_matrix
    fb_name  = f_total_ppt
  [../]

  #
  # Cahn-Hilliard Equation
  #
  [./CHBulk]
    type = KKSSplitCHCRes
    variable = c
    ca       = cm
    fa_name  = f_total_matrix
    w        = w
  [../]

  [./dcdt]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./ckernel]
    type = SplitCHWRes
    mob_name = M
    variable = w
  [../]

  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = f_total_matrix
    fb_name  = f_total_ppt
    w        = 0.0264
    args = 'cp cm'
  [../]
  [./ACBulkC]
    type = KKSACBulkC
    variable = eta
    ca       = cm
    cb       = cp
    fa_name  = f_total_matrix
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = kappa
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       ilu            nonzero'

  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-11
  num_steps = 200

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.5
  [../]
[]

[VectorPostprocessors]
  #[./eta]
  #  type =  LineValueSampler
  #  start_point = '-10 0 0'
  #  end_point = '10 0 0'
  #  variable = eta
  #  num_points = 321
  #  sort_by =  id
  #[../]
  #[./eta_position]
  #  type = FindValueOnLineSample
  #  vectorpostprocessor = eta
  #  variable_name = eta
  #  search_value = 0.5
  #[../]
#  [./f_el]
#    type =  LineMaterialRealSampler
#    start = '-20 0 0'
#    end   = '20 0 0'
#    sort_by = id
#    property = f_el
#  [../]
#  [./f_el_a]
#    type =  LineMaterialRealSampler
#    start = '-20 0 0'
#    end   = '20 0 0'
#    sort_by = id
#    property = fe_m
#  [../]
#  [./f_el_b]
#    type =  LineMaterialRealSampler
#    start = '-20 0 0'
#    end   = '20 0 0'
#    sort_by = id
#    property = fe_p
#  [../]
#  [./h_out]
#    type =  LineMaterialRealSampler
#    start = '-20 0 0'
#    end   = '20 0 0'
#    sort_by = id
#    property = h
#  [../]
#  [./fm_out]
#    type =  LineMaterialRealSampler
#    start = '-20 0 0'
#    end   = '20 0 0'
#    sort_by = id
#    property = fm
#  [../]
[]

[Postprocessors]
  [./f_el_int]
    type = ElementIntegralMaterialProperty
    mat_prop = f_el_mat
  [../]
  [./c_alpha]
    type =  SideAverageValue
    boundary = left
    variable = c
  [../]
  [./c_beta]
    type =  SideAverageValue
    boundary = right
    variable = c
  [../]
  [./e11_alpha]
    type =  SideAverageValue
    boundary = left
    variable = e11
  [../]
  [./e11_beta]
    type =  SideAverageValue
    boundary = right
    variable = e11
  [../]
  [./s11_alpha]
    type =  SideAverageValue
    boundary = left
    variable = sigma11
  [../]
  [./s22_alpha]
    type =  SideAverageValue
    boundary = left
    variable = sigma22
  [../]
  [./s33_alpha]
    type =  SideAverageValue
    boundary = left
    variable = sigma33
  [../]
  [./s11_beta]
    type =  SideAverageValue
    boundary = right
    variable = sigma11
  [../]
  [./s22_beta]
    type =  SideAverageValue
    boundary = right
    variable = sigma22
  [../]
  [./s33_beta]
    type =  SideAverageValue
    boundary = right
    variable = sigma33
  [../]
  [./f_el_alpha]
    type =  SideAverageValue
    boundary = left
    variable = f_el
  [../]
  [./f_el_beta]
    type =  SideAverageValue
    boundary = right
    variable = f_el
  [../]
  [./f_c_alpha]
    type =  SideAverageValue
    boundary = left
    variable = Fglobal
  [../]
  [./f_c_beta]
    type =  SideAverageValue
    boundary = right
    variable = Fglobal
  [../]
  [./chem_pot_alpha]
    type =  SideAverageValue
    boundary = left
    variable = w
  [../]
  [./chem_pot_beta]
    type =  SideAverageValue
    boundary = right
    variable = w
  [../]
  [./psi_alpha]
    type =  SideAverageValue
    boundary = left
    variable = psi
  [../]
  [./psi_beta]
    type =  SideAverageValue
    boundary = right
    variable = psi
  [../]
  [./total_energy]
    type = ElementIntegralVariablePostprocessor
    variable = Fglobal
  [../]
  # Get simulation cell size from postprocessor
  [./volume]
    type = ElementIntegralMaterialProperty
    mat_prop = 1
  [../]
  [./psi_eq_int]
    type = FunctionValuePostprocessor
    function = psi_eq_int
  [../]
  [./psi_int]
    type = ElementIntegralVariablePostprocessor
    variable = psi
  [../]
  [./gamma]
    type = FunctionValuePostprocessor
    function = gamma
  [../]
[]

#
# Precondition using handcoded off-diagonal terms
#
[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]


[Outputs]
  [./exodus]
    type = Exodus
    interval = 20
  [../]
  [./csv]
    type = CSV
    execute_on = 'final'
  [../]
#[./console]
#    type = Console
#    output_file = true
#  [../]
[]

modules/tensor_mechanics/test/tests/weak_plane_tensile/large_deform2.i

# large strain with weak-plane normal rotating with mesh
# First rotate mesh 45deg about x axis
# Then apply stretch in the y=z direction.
# This should create a pure tensile load (no shear), which
# should return to the yield surface.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[BCs]
  # rotate:
  # ynew = c*y + s*z.  znew = -s*y + c*z
  [./bottomx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = back
    function = '0'
  [../]
  [./bottomy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = back
    function = '0.70710678*y+0.70710678*z-y'
  [../]
  [./bottomz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = back
    function = '-0.70710678*y+0.70710678*z-z'
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = '0'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = '0.70710678*y+0.70710678*z-y+if(t>0,1,0)'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '-0.70710678*y+0.70710678*z-z+if(t>0,1,0)'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 1.0E6
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-7
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wpt
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-9
  [../]
[]


[Executioner]
  start_time = -1
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = large_deform2
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/tutorials/basics/part_2.2.i

#Tensor Mechanics tutorial: the basics
#Step 2, part 2
#2D axisymmetric RZ simulation of uniaxial tension with finite strain elasticity

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = necking_quad4.e
  uniform_refine = 1
  second_order = true
[]

[Modules/TensorMechanics/Master]
  [./block1]
    strain = FINITE #change to use finite strain instead of small linearized strain class
    add_variables = true #detects the change of the mesh to second order and automatically sets the variables
    generate_output = 'stress_zz vonmises_stress'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = top
    function = '0.0007*t'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  end_time = 5

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm lu 1 101'
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update14.i

# MC update version, with only Compressive with compressive strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-2 1 -0.5  -1 -1.9 0  -0.5 0 -3'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/ad_elastic/rspherical_small_elastic-noad.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 5
[]

[Problem]
  coord_type = RSPHERICAL
[]

[GlobalParams]
  displacements = 'disp_r'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = StressDivergenceRSphericalTensors
    component = 0
    variable = disp_r
  [../]
[]

[BCs]
  [./center]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
  [./strain]
    type = ComputeRSphericalSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
  nl_max_its = 200
[]

[Outputs]
  exodus = true
  file_base = rspherical_small_elastic_out
[]

test/tests/utils/2d_linear_interpolation/2d_linear_interpolation_test.i

# Test description - view this file in emacs and adjust the window size to view the file as it was created.
#
# This problem tests the MOOSE function PiecewiseBilinear and the MOOSE utility BilinearInterpolation, which are
# used to solve 2D linear interpolation problems.
#
# The problem is one element with node coordinate locations in x,y,z space as indicated in the ASCII art:
#
#
#                    ^
#                    |
#                    z
#                    |
#
#                    (1,1,2)        (1,2,2)
#                    *--------------*
#                  / |            / |
#                /   |  (2,2,2) /   |
#       (2,1,2) *--------------*    |
#               |    |         |    |
#               |    *---------|----* (1,2,1)  --y-->
#               |  / (1,1,1)   |  /
#               |/             |/
#               *--------------*
#              / (2,1,1)       (2,2,1)
#            /
#          x
#        /
#      |_
#
#  problem time ...0...1...2
#
#
# There are four variables and four functions of the same name, u,v,w, and A.  The diffusion equation is solved
# for each of these variables with a boundary condition of type FunctionDirchletBC applied to a boundary
# (i.e. node set) that includes every node in the element.  Each boundary condition uses a function of type
# PiecewiseBilinear that gets its value from a file named fred.csv.
#
# fred is a matrix of data whose first row and first column are vectors that can refer to either spacial positions
# corresponding to an axis or values of time.  The remaining data are values of fred for a given row and column pair.
#
#
# Visualize fred like this:
#
#                          0 1 3  where fred is a csv file that actually looks like this    0,1,3
#                        0 0 0 0                                                            0,0,0,0
#                        1 0 1 3                                                            1,0,1,3
#                        3 0 5 7                                                            3,0,5,7
#
#  Another way to think of fred is:
#
#                                   |0 1 3| - These values can be spacial positions corresponding to
#                                             axis= 0,1, or 2, or time
#
#
#                           |0|     |0 0 0|
#     These values can be - |1|     |0 1 3| - values of fred corresponding to row-column pairs
#     time or spacial       |3|     |0 5 7|
#     positions corresponding
#     to axis= 0,1, or 2
#
#
# The parameters and possible values for the function PiecewiseBilinear are:
#
# data_file = fred.csv
# axis = 0, 1, or 2
# xaxis = 0, 1, or 2
# yaxis = 0, 1, or 2
# radial = true or false (false is default)
#
# where 0, 1, or 2 refer to the x, y, or z axis.
#
# If the parameter axis is defined, then the first row of fred are spacial position and the first column
# of fred are the values of time.
#
# If the parameter xaxis is defined, then the first row of fred are spacial positions and the first column
# of fred are the values of time ... just like defining the parameter axis.
#
# If the parameter yaxis is defined, then the first row of fred are time values and the first column of fred
# are spacial positions.
#
# If parameters axis AND EITHER xaxis or yaxis are defined together you'll get a moose error.
# i.e.
# axis = 0
# xaxis = 1
# results in an error.  So, if you use the parameter axis, don't use xaxis or yaxis.
#
# If parameters xaxis and yaxis are defined (and radial is false), then the first row of fred are spacial positions corresponding to xaxis value,
# and the first column are spacial positions corresponding to the yaxis value.
#
# If xaxis and yaxis are defined and radial is true, the first row of fred contains values
# corresponding to the radius calculated from the coordinates of each point.  Note that
# the definition of xaxis and yaxis define the "plane" of the radius.  For example,
# xaxis = 0 and yaxis = 1 means that x and y components of the point are use to
# calculate the radius.  xaxis = 1 and yaxis = 2 means that x and z components are used.
# The first column is for time in this case.  xaxis and yaxis have to be specified and
# radial = true for this to work, otherwise a MOOSE error will result.
# This was developed so that an axisymmetric function could be defined for a 3D mesh.
#
[Mesh]
  file = cube.e
  # This problem only has 1 element, so using DistributedMesh in parallel
  # isn't really an option, and we don't care that much about DistributedMesh
  # in serial.
  parallel_type = replicated
[]

[Variables]

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./A]
    order = FIRST
    family = LAGRANGE
  [../]
  [./scaled_u]
    order = FIRST
    family = LAGRANGE
  [../]
  [./R]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]


  [./u]
    type = PiecewiseBilinear
    data_file = fred.csv
    axis = 0
  [../]
#
# Example 1 - variable u
#
# In this example, the first variable is u and the parameter axis is given the value 0.  For such a case, the first
# row of fred refers to nodal x-coordinate values and the first column of fred (after the first row) refers to the
# times 0, 1, and 3.
#
# So, at time = 0, the value of u at each node is 0, because that's the value of fred for all x-coordinate values at time=0.
#
# At time = 1, the value of u at nodes with x-coordinate = 1 is 1.
#            , the value of u at nodes with x-coordinate = 2 is 2.
#
# You can check this value with your own 2D linear interpolation calculation.  Go ahead and check all the examples!
#
# At time = 2, the value of u at nodes with x-coordinate = 1 is 3.
#            , the value of u at nodes with x-coordinate = 2 is 4.
#
  [./v]
    type = PiecewiseBilinear
    data_file = fred.csv
    xaxis = 1
  [../]
#
# Example 2 - variable v
#
# In this example, the variable is v and the parameter xaxis is given the value 1.  For such a case, the first
# row of fred refers to nodal y-coordinate values and the first column of fred (after the first row) refers to the
# times 0, 1, and 3.
#
# At time = 0, the value of v at each node is 0, because that's the value of fred for all y-coordinate values at time=0.
#
# At time = 1, the value of v at nodes with y-coordinate = 1 is 1.
#            , the value of v at nodes with y-coordinate = 2 is 2.
#
# At time = 2, the value of v at nodes with y-coordinate = 1 is 3.
#            , the value of v at nodes with y-coordinate = 2 is 4.
#
  [./w]
    type = PiecewiseBilinear
    data_file = fred.csv
    yaxis = 2
  [../]
#
# Example 3 - variable w
#
# In this example, the variable is w and the parameter yaxis is given the value 2.  For such a case, the first
# row of fred refers to times 0, 1, and 3.  The first column of fred (after the first row) refers to the nodal
# z-coordinate values.
#
# At time = 0, the value of w at each node is 0, because that's the value of fred for all z-coordinate values at time=0.
#
# At time = 1, the value of w at nodes with z-coordinate = 1 is 1.
#            , the value of w at nodes with z-coordinate = 2 is 3.
#
# At time = 2, the value of w at nodes with z-coordinate = 1 is 2.
#            , the value of w at nodes with z-coordinate = 2 is 4.
#
  [./A]
    type = PiecewiseBilinear
    data_file = fred.csv
    xaxis = 0
    yaxis = 1
  [../]
#
# Example 4 - variable A
#
# In this example, the variable is A and the parameters xaxis AND yaxis BOTH defined and given the values 0 and 1 respectivley.
# For such a case, the first row of fred refers to nodal x-coordinate values.
# The first column refers to nodal y-coordinate values.
#
# In this example the values are the same for every time (except time=0 where the values are undefined)
#
# For nodal coordinates with x=1, y=1 A = 1
#                            x=2, y=1 A = 2
#                            x=1, y=2 A = 3
#                            x=2, y=2 A = 4
#
# You can use this 2D linear interpolation function for anything (BC, Kernel, AuxKernel, Material) that has
# a function as one of its parameters.  For example, this can be used to describe the fission peaking factors
# that vary in time and along the length of a fuel rod, or a fission rate distribution in metal fuel that varies
# as a function of x and y postion, but is constant in time.
#
#
  [./scaled_u]
    type = PiecewiseBilinear
    data_file = fred.csv
    axis = 0
    scale_factor = 2
  [../]
#
# Example 5 - variable scaled_u.  This is just a scaled version of Example 1 to see if the scale_factor works
#
#
#
  [./R]
    type = PiecewiseBilinear
    data_file = fred.csv
    xaxis = 0
    yaxis = 1
    radial = true
  [../]
#
# Example 6 - variable R
#
# In this example, the variable is R and the parameters xaxis and yaxis are defined and
# given the values 0 and 1 respectivley.  The parameter radial is also defined and given
# the value true.  In this case, the x and y components of each point are used to
# calculate a radius.  This radius is used in the call to BilinearInterpolation.
# In fred.csv, the first row are the radius values.  The first column is time.
#
# At time = 1, the value of R at nodes with coordinates (x = 1, y = 1, or r = 1.414) is 1.414.
#            , the value of R at nodes with coordinates (x = 1, y = 2, or r = 2.236) is 2.236.
#            , the value of R at nodes with coordinates (x = 2, y = 2, or r = 2.828) is 2.828.
#
# At time = 2, the value of R at nodes with coordinates (x = 1, y = 1, or r = 1.414) is 3.414.
#            , the value of R at nodes with coordinates (x = 1, y = 2, or r = 2.236) is 4.236.
#            , the value of R at nodes with coordinates (x = 2, y = 2, or r = 2.828) is 4.828.
#
# Note that the case of x = 2, y = 1 gives the same result as x = 1, y=2.
#
#
[] # End Functions

[Kernels]

  [./diffu]
    type = Diffusion
    variable = u
  [../]
  [./diffv]
    type = Diffusion
    variable = v
  [../]
  [./diffw]
    type = Diffusion
    variable = w
  [../]
  [./diffA]
    type = Diffusion
    variable = A
  [../]
  [./diff_scaled_u]
    type = Diffusion
    variable = scaled_u
  [../]
  [./diffR]
    type = Diffusion
    variable = R
  [../]
[]

[BCs]

  [./u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = u
  [../]
  [./v]
    type = FunctionDirichletBC
    variable = v
    boundary = '1'
    function = v
  [../]
  [./w]
    type = FunctionDirichletBC
    variable = w
    boundary = '1'
    function = w
  [../]
  [./A]
    type = FunctionDirichletBC
    variable = A
    boundary = '1'
    function = A
  [../]
  [./scaled_u]
    type = FunctionDirichletBC
    variable = scaled_u
    boundary = '1'
    function = scaled_u
  [../]
  [./R]
    type = FunctionDirichletBC
    variable = R
    boundary = '1'
    function = R
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 2
  nl_rel_tol = 1e-12
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/frictional_02_penalty.i

#  This is a benchmark test that checks constraint based frictional
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2 and a friction coefficient
#  of 0.2 is used.  The gold file is run on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./left_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm     lu    20    101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-3
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    friction_coefficient = 0.2
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform10.i

# apply a shear deformation and tensile stretch to observe all hardening.
# Here p_trial=12, q_trial=2*Sqrt(20)
# MOOSE yields:
# q_returned = 1.696
# p_returned = 0.100
# intnl_shear = 1.81
# intnl_tens = 0.886
# These give, at the returned point
# cohesion = 1.84
# tanphi = 0.513
# tanpsi = 0.058
# tensile = 0.412
# This means that
# f_shear = -0.0895
# f_tensile = -0.312
# Note that these are within smoothing_tol (=1) of each other
# Hence, smoothing must be used:
# ismoother = 0.0895
# (which gives the yield function value = 0)
# smoother = 0.328
# This latter gives dg/dq = 0.671, dg/dp = 0.368
# for the flow directions.  Finally ga = 2.70, and
# the returned point satisfies the normality conditions.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 't'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = '2*t'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 't'
  [../]
[]


[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 2
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 0
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 1E8
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '4 4'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-3
    perfect_guess = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform10
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/sliding_block/sliding/constraint/sm/frictionless_kinematic_sm.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the kinematic method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm     lu    20    101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+6
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/richards/test/tests/sinks/s_fu_03.i

# with fully_upwind = true
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
  fully_upwind = true
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.5
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[AuxVariables]
  [./seff]
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 2
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((mi-lfout-rfout-mf)/2/(mi+mf))
    vars = 'mi mf lfout rfout'
    vals = 'mass_init mass_fin left_flux_out right_flux_out'
  [../]
[]

[Postprocessors]
  [./mass_init]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]
  [./mass_fin]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]
  [./left_flux_out]
    type = RichardsPiecewiseLinearSinkFlux
    boundary = left
    variable = pressure
    pressures = '-1 1'
    bare_fluxes = '1E2 2E2'
    use_mobility = true
    use_relperm = true
  [../]
  [./right_flux_out]
    type = RichardsPiecewiseLinearSinkFlux
    boundary = right
    variable = pressure
    pressures = '-1 1'
    bare_fluxes = '1E2 2E2'
    use_mobility = true
    use_relperm = true
  [../]
  [./p0]
    type = PointValue
    point = '0 0 0'
    variable = pressure
  [../]
  [./s0]
    type = PointValue
    point = '0 0 0'
    variable = seff
  [../]
  [./mass_bal]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = left
    pressures = '-1 1'
    bare_fluxes = '1E2 2E2'
    variable = pressure
    use_mobility = true
    use_relperm = true
  [../]
  [./right_flux]
    type = RichardsPiecewiseLinearSink
    boundary = right
    pressures = '-1 1'
    bare_fluxes = '1E2 2E2'
    variable = pressure
    use_mobility = true
    use_relperm = true
  [../]
[]

[Kernels]
  active = 'richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
[]

[AuxKernels]
  [./seff_auxk]
    type = RichardsSeffAux
    variable = seff
    seff_UO = SeffVG
    pressure_vars = 'pressure'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 2.1E-5 2.2E-5  2.1E-5 0.1E-5 3.3E-5  2.2E-5 3.3E-5 2E-5'
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 2E-3
  end_time = 0.2
[]

[Outputs]
  file_base = s_fu_03
  csv = true
  execute_on = timestep_end
[]

test/tests/kernels/vector_fe/coupled_vector_gradient.i

# This example demonstrates ability to set Dirichlet boundary conditions for LAGRANGE_VEC variables

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
    family = LAGRANGE_VEC
    order = FIRST
  [../]
  [./v]
    family = LAGRANGE_VEC
    order = FIRST
  [../]
  [./w]
    family = LAGRANGE_VEC
    order = FIRST
  [../]
  [./s]
    family = LAGRANGE_VEC
    order = FIRST
  [../]
  [./q]
  [../]
[]

[Kernels]
  [./u_diff]
    type = VectorDiffusion
    variable = u
  [../]
  [./v_diff]
    type = VectorDiffusion
    variable = v
  [../]
  [./w_diff]
    type = VectorDiffusion
    variable = w
  [../]
  [./s_diff]
    type = VectorDiffusion
    variable = s
  [../]
  [./v_coupled_diff]
    type = CoupledVectorDiffusion
    variable = v
    v = u
  [../]
  [./w_coupled_diff]
    type = CoupledVectorDiffusion
    variable = w
    v = u
    state = old
  [../]
  [./s_coupled_diff]
    type = CoupledVectorDiffusion
    variable = s
    v = u
    state = older
  [../]
  [./q_diff]
    type = Diffusion
    variable = q
  [../]
[]

[BCs]
  [./left_u]
    type = VectorDirichletBC
    variable = u
    values = '0 0 0'
    boundary = 'left'
  [../]
  [./left_v]
    type = VectorDirichletBC
    variable = v
    values = '0 0 0'
    boundary = 'left'
  [../]
  [./left_w]
    type = VectorDirichletBC
    variable = w
    values = '0 0 0'
    boundary = 'left'
  [../]
  [./left_s]
    type = VectorDirichletBC
    variable = s
    values = '0 0 0'
    boundary = 'left'
  [../]
  [./right_u]
    type = VectorFunctionDirichletBC
    variable = u
    boundary = 'right'
    function_x = 'x_exact'
    function_y = 'y_exact'
  [../]
  [./right_v]
    type = VectorFunctionDirichletBC
    variable = v
    boundary = 'right'
    function_x = 'x_exact'
    function_y = 'y_exact'
  [../]
  [./right_w]
    type = VectorFunctionDirichletBC
    variable = w
    boundary = 'right'
    function_x = 'x_exact_old'
    function_y = 'y_exact_old'
  [../]
  [./right_s]
    type = VectorFunctionDirichletBC
    variable = s
    boundary = 'right'
    function_x = 'x_exact_older'
    function_y = 'y_exact_older'
  [../]
  [./left_q]
    type = DirichletBC
    variable = q
    boundary = 'left'
    value = 1
  [../]
  [./right_q]
    type = NeumannBC
    variable = q
    boundary = 'right'
    value = 1
  [../]
[]

[Functions]
  [./x_exact]
    type = ParsedFunction
    value = 't'
  [../]
  [./y_exact]
    type = ParsedFunction
    value = 't'
  [../]
  [./x_exact_old]
    type = ParsedFunction
    value = 'if(t < 1, 0, t - 1)'
  [../]
  [./y_exact_old]
    type = ParsedFunction
    value = 'if(t < 1, 0, t - 1)'
  [../]
  [./x_exact_older]
    type = ParsedFunction
    value = 'if(t < 2, 0, t - 2)'
  [../]
  [./y_exact_older]
    type = ParsedFunction
    value = 'if(t < 2, 0, t - 2)'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 3
  solve_type = 'NEWTON'
  petsc_options = '-ksp_converged_reason -snes_converged_reason'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '100'
  nl_max_its = 3
  l_max_its = 100
  dtmin = 1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_elastic/rspherical_finite_elastic.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 5
[]

[Problem]
  coord_type = RSPHERICAL
[]

[GlobalParams]
  displacements = 'disp_r'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = ADStressDivergenceRSphericalTensors
    component = 0
    variable = disp_r
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./center]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeRSphericalFiniteStrain
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

test/tests/meshgenerators/meta_data_store/mesh_meta_data_store.i

[Mesh]
  [gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 12
    ny = 10
    xmin = 4
    xmax = 7
  []
[]

[Variables]
  [./u]
  [../]
[]

[AutoLineSamplerTest]
  # Add a line sampler on the variable right at the nodes based on the GeneratedMeshGenerator
  variable = u
  mesh_generator = 'gmg'
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/MultiPhase/asymmetriccrosstermbarrierfunction.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 200
  xmin = 0
  xmax = 9
[]

[Functions]
  [./func1]
    type = ParsedFunction
    value = 'il:=x-7; ir:=2-x; if(x<1, 1,
                               if(x<2, 0.5-0.5*cos(ir*pi),
                               if(x<7, 0,
                               if(x<8, 0.5-0.5*cos(il*pi),
                               1))))'
  [../]
  [./func2]
    type = ParsedFunction
    value = 'il:=x-1; ir:=5-x; if(x<1, 0,
                               if(x<2, 0.5-0.5*cos(il*pi),
                               if(x<4, 1,
                               if(x<5, 0.5-0.5*cos(ir*pi),
                               0))))'
  [../]
  [./func3]
    type = ParsedFunction
    value = 'il:=x-4; ir:=8-x; if(x<4, 0,
                               if(x<5, 0.5-0.5*cos(il*pi),
                               if(x<7, 1,
                               if(x<8, 0.5-0.5*cos(ir*pi),
                               0))))'
  [../]
[]

[AuxVariables]
  [./eta1]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = func1
    [../]
  [../]
  [./eta2]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = func2
    [../]
  [../]
  [./eta3]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = func3
    [../]
  [../]
[]

[Materials]
  [./symmetriccrosstermbarrier_low]
    type = AsymmetricCrossTermBarrierFunctionMaterial
    etas     = 'eta1 eta2 eta3'
    hi_names = 'h1   h2   h3'
    W_ij = '0   1   2.2
            1   0   3.1
            2.2 3.1 0'
    function_name = gsl
    g_order = LOW
    outputs = exodus
  [../]
  [./asymmetriccrosstermbarrier_low]
    type = AsymmetricCrossTermBarrierFunctionMaterial
    etas     = 'eta1 eta2 eta3'
    hi_names = 'h1   h2   h3'
    W_ij = ' 0    1.2 5.2
             0.8  0   2.1
            -0.8 4.1  0'
    function_name = gal
    g_order = LOW
    outputs = exodus
  [../]

  [./asymmetriccrosstermbarrie_simple]
    type = AsymmetricCrossTermBarrierFunctionMaterial
    etas     = 'eta1 eta2 eta3'
    hi_names = 'h1   h2   h3'
    W_ij = '0   1.2   3.2
            0.8   0   2.1
            1.2 4.1 0'
    function_name = gas
    g_order = SIMPLE
    outputs = exodus
  [../]

  [./switch1]
    type = SwitchingFunctionMaterial
    function_name = h1
    eta = eta1
  [../]
  [./switch2]
    type = SwitchingFunctionMaterial
    function_name = h2
    eta = eta2
  [../]
  [./switch3]
    type = SwitchingFunctionMaterial
    function_name = h3
    eta = eta3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 1
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  exodus = true
  execute_on = final
[]

modules/tensor_mechanics/test/tests/beam/static/torsion_1.i

# Torsion test with automatically calculated Ix

# A beam of length 1 m is fixed at one end and a moment  of 5 Nm
# is applied along the axis of the beam.
# G = 7.69e9
# Ix = Iy + Iz = 2e-5
# The axial twist at the free end of the beam is:
# phi = TL/GIx = 3.25e-4

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 1.0
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/LineElementMaster]
  [./block_all]
    add_variables = true
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'

    # Geometry parameters
    area = 0.5
    Iy = 1e-5
    Iz = 1e-5

    y_orientation = '0.0 1.0 0.0'

    block = 0
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = ConstantRate
    variable = rot_x
    boundary = right
    rate = 5.0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 2.0e9
    poissons_ratio = 0.3
    shear_coefficient = 1.0
    block = 0
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '1.0 0.0 0.0'
    variable = rot_x
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/combined/test/tests/evolving_mass_density/expand_compress_test_tensors.i

#  Element mass tests

#  This series of tests is designed to compute the mass of elements based on
#  an evolving mass density calculation.  The tests consist of expansion and compression
#  of the elastic patch test model along each axis, uniform expansion and compression,
#  and shear in each direction.  The expansion and compression tests change the volume of
#  the elements.  The corresponding change in density should compensate for this so the
#  mass remains constant.  The shear tests should not result in a volume change, and this
#  is checked too.  The mass calculation is done with the post processor called Mass.

#  The tests/file names are as follows:

#  Expansion and compression along a single axis
#  expand_compress_x_test_out.e
#  expand_compress_y_test_out.e
#  expand_compress_z_test_out.e

#  Volumetric expansion and compression
#  uniform_expand_compress_test.i

#  Zero volume change shear along each axis
#  shear_x_test_out.e
#  shear_y_test_out.e
#  shear_z_test_out.e

#  The resulting mass calculation for these tests should always be = 1.

# This test is a duplicate of the uniform_expand_compress_test.i test for solid mechanics, and the
#   output of this tensor mechanics test is compared to the original
#   solid mechanics output.  The duplication is necessary to test the
#   migrated tensor mechanics version while maintaining tests for solid mechanics.

[Mesh]
  file = elastic_patch.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  order = FIRST
  family = LAGRANGE
[]

[Functions]
  [./rampConstant1]
    type = PiecewiseLinear
    x = '0.00 1.00  2.0   3.00'
    y = '0.00 0.25  0.0  -0.25'
    scale_factor = 1
  [../]
[] # Functions

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./bot_x]
    type = DirichletBC
    variable = disp_x
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    value = 0
  [../]
  [./bot_z]
    type = DirichletBC
    variable = disp_z
    value = 0
  [../]
  [./top]
    type = FunctionDirichletBC
    preset = false
    function = rampConstant1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2 3 4 5 6 7'
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

  [./small_strain]
    type = ComputeSmallStrain
    block = ' 1 2 3 4 5 6 7'
  [../]

  [./elastic_stress]
    type = ComputeLinearElasticStress
    block = '1 2 3 4 5 6 7'
  [../]
[]

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10
  l_max_its = 20
  start_time = 0.0
  dt = 1.0
  num_steps = 3
  end_time = 3.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

[Postprocessors]
  [./Mass]
    type = Mass
    variable = disp_x
    execute_on = 'initial timestep_end'
  [../]
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/small_deform1.i

# deformations are applied so that the trial stress is
# shear = 10, normalstress = 2
#
# Cohesion is chosen to be 1, and friction angle = 26.565, so tan(friction_angle) = 1/2
# This means that (shear, normalstress) = (0, 2) is the apex
# of the shear envelope
#
# Poisson's ratio is chosen to be zero, and Lame mu = 1E6,
# so the return must solve
# f = 0
# shear = shear_trial - (1/2)*mu*ga = 10 - 0.5E6*ga
# normalstress = normalstress - mu*tan(dilation)*ga
#
# Finally, tan(dilation) = 2/18 is chosen.
#
# Then the returned value should have
# shear = 1, normalstress = 0
#
# Here shear = sqrt(s_yz^2 + s_xz^2)
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = x_disp
    boundary = front
    value = 8E-6
  [../]
  [./topy]
    type = DirichletBC
    variable = y_disp
    boundary = front
    value = 6E-6
  [../]
  [./topz]
    type = DirichletBC
    variable = z_disp
    boundary = front
    value = 1E-6
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 0
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-5
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform1
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/porous_flow/examples/tidal/earth_tide_fullsat.i

# A confined aquifer is fully saturated with water
# Earth tides apply strain to the aquifer and the resulting porepressure changes are recorded
#
# To replicate standard poroelasticity exactly:
# (1) the PorousFlowBasicTHM Action is used;
# (2) multiply_by_density = false;
# (3) PorousFlowConstantBiotModulus is used
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
  biot_coefficient = 0.6
  multiply_by_density = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./strain_x]
    type = FunctionDirichletBC
    variable = disp_x
    function = earth_tide_x
    boundary = 'left right'
  [../]
  [./strain_y]
    type = FunctionDirichletBC
    variable = disp_y
    function = earth_tide_y
    boundary = 'bottom top'
  [../]
  [./strain_z]
    type = FunctionDirichletBC
    variable = disp_z
    function = earth_tide_z
    boundary = 'back front'
  [../]
[]

[Functions]
  [./earth_tide_x]
    type = ParsedFunction
    value = 'x*1E-8*(5*cos(t*2*pi) + 2*cos((t-0.5)*2*pi) + 1*cos((t+0.3)*0.5*pi))'
  [../]
  [./earth_tide_y]
    type = ParsedFunction
    value = 'y*1E-8*(7*cos(t*2*pi) + 4*cos((t-0.3)*2*pi) + 7*cos((t+0.6)*0.5*pi))'
  [../]
  [./earth_tide_z]
    type = ParsedFunction
    value = 'z*1E-8*(7*cos((t-0.5)*2*pi) + 4*cos((t-0.8)*2*pi) + 7*cos((t+0.1)*4*pi))'
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
    [../]
  [../]
[]

[PorousFlowBasicTHM]
  coupling_type = HydroMechanical
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  gravity = '0 0 0'
  fp = the_simple_fluid
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 10.0E9 # drained bulk modulus
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # only the initial value of this is ever used
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    solid_bulk_compliance = 1E-10
    fluid_bulk_modulus = 2E9
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0   0 1E-12 0   0 0 1E-12'
  [../]
[]

[Postprocessors]
  [./pp]
    type = PointValue
    point = '0.5 0.5 0.5'
    variable = porepressure
  [../]
[]


[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.01
  end_time = 2
[]

[Outputs]
  console = true
  csv = true
[]

modules/tensor_mechanics/test/tests/ad_elastic/rz_finite_elastic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
  [./disp_z]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = ADStressDivergenceRZTensors
    component = 0
    variable = disp_r
    use_displaced_mesh = true
  [../]
  [./stress_z]
    type = ADStressDivergenceRZTensors
    component = 1
    variable = disp_z
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0
  [../]
  [./axial]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeAxisymmetricRZFiniteStrain
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/check_error/sub_unused.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  foo = bar
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/rotation/rotation_test.i

#
# Rotation Test
#
# This test is designed to compute a uniaxial stress and then follow that
#   stress as the mesh is rotated 90 degrees.
#
# The mesh is composed of one block with a single element.  The nodal
#   displacements in the x and y directions are prescribed.  Poisson's
#   ratio is zero.
#

[Mesh]#Comment
  file = rotation_test.e
  displacements = 'disp_x disp_y disp_z'
[] # Mesh

[Functions]
  [./x_200]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, delta*t, (1.0+delta)*cos(pi/2*(t-t0)) - 1.0)'
  [../]
  [./y_200]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, 0.0, (1.0+delta)*sin(pi/2*(t-t0)))'
  [../]

  [./x_300]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, delta*t, (1.0+delta)*cos(pi/2.0*(t-t0)) - sin(pi/2.0*(t-t0)) - 1.0)'
  [../]
  [./y_300]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, 0.0, cos(pi/2.0*(t-t0)) + (1+delta)*sin(pi/2.0*(t-t0)) - 1.0)'
  [../]

  [./x_400]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, 0.0, -sin(pi/2.0*(t-t0)))'
  [../]
  [./y_400]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '-1e-6 1.0'
    value = 'if(t<=1.0, 0.0, cos(pi/2.0*(t-t0)) - 1.0)'
  [../]

[] # Functions

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

[] # Variables

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]

[] # AuxVariables

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]

  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]

[] # AuxKernels

[BCs]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 100
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./x_200]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 200
    function = x_200
  [../]
  [./y_200]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 200
    function = y_200
  [../]

  [./x_300]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 300
    function = x_300
  [../]
  [./y_300]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 300
    function = y_300
  [../]

  [./x_400]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 400
    function = x_400
  [../]
  [./y_400]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 400
    function = y_400
  [../]

  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '100 200 300 400'
    value = 0.0
  [../]

[] # BCs

[Materials]
  [./test]
    type = Elastic
    block = 1

    poissons_ratio = 0
    shear_modulus = 5e6

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]

[] # Materials

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  nl_rel_tol = 1e-30

  l_max_its = 20

  start_time = 0.0
  dt = 0.01
  end_time = 2.0
[] # Executioner


[Outputs]
  file_base = out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

test/tests/auxkernels/solution_aux/solution_aux_multi_var.i

[Mesh]
  file = cubesource.e
  # The SolutionUserObject uses the copy_nodal_solution() capability
  # of the Exodus reader, and therefore won't work if the initial mesh
  # has been renumbered (it will be reunumbered if you are running with
  # DistributedMesh in parallel).  Hence, we restrict this test to run with
  # ReplicatedMesh only.
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
  [./en]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./nn]
    type = SolutionAux
    solution = soln
    variable = nn
    scale_factor = 2.0
    from_variable = nodal_10
    add_factor = -20
  [../]
  [./en]
    type = SolutionAux
    solution = soln
    variable = en
    scale_factor = 2.0
    from_variable = source_nodal
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = cubesource_added.e
    timestep = 2
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 50
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/heat_conduction/test/tests/gray_lambert_radiator/gray_lambert_cavity.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 2
  nx = 1
  ny = 1
[]

[Problem]
  kernel_coverage_check = false
[]

[Variables]
  [./temperature]
    initial_condition = 300
  [../]
[]

[UserObjects]
  [./gray_lambert]
    type = ConstantViewFactorSurfaceRadiation
    boundary = 'bottom top left right'
    fixed_temperature_boundary = 'bottom top'
    fixed_boundary_temperatures = '550 300'
    adiabatic_boundary = 'right left'
    emissivity = '1 0.75 0.75 0.75'
    temperature = temperature
    view_factors = '0 0.123 0.6928 0.1841;
                    0.123 0 0.1841 0.6928;
                    0.2771 0.0736 0.4458 0.2035;
                    0.0736 0.2771 0.2035 0.4458'
  [../]
[]

[VectorPostprocessors]
  [./lambert_vpp]
    type = SurfaceRadiationVectorPostprocessor
    surface_radiation_object_name = gray_lambert
    information = 'temperature emissivity radiosity heat_flux_density'
  [../]

  [./view_factors]
    type = ViewfactorVectorPostprocessor
    surface_radiation_object_name = gray_lambert
  [../]
[]

[Postprocessors]
  [./heat_flux_density_bottom]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = HEAT_FLUX_DENSITY
    boundary = bottom
  [../]

  [./temperature_left]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = TEMPERATURE
    boundary = left
  [../]

  [./temperature_right]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = TEMPERATURE
    boundary = right
  [../]

  [./brightness_top]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = RADIOSITY
    boundary = top
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

test/tests/multiapps/catch_up/master.i

# ##########################################################
# This is a test of the Multiapp System. This test solves
# four independent applications spaced throughout a
# master domain interleaved with a master solve.
#
# @Requirement F7.10
# ##########################################################
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 'left'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  dt = 0.2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    type = TransientMultiApp
    positions = '0 0 0  0.5 0.5 0'
    input_files = 'sub.i failing_sub.i'
    app_type = MooseTestApp
    execute_on = 'timestep_end'
    max_catch_up_steps = 100
    max_failures = 100
    catch_up = true
  [../]
[]

test/tests/functions/piecewise_multilinear/oneDb.i

# PiecewiseMultilinear function tests in 1D
# See [Functions] block for a description of the tests
# The functions are compared with ParsedFunctions using postprocessors

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 2
  nx = 10
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./linear1_var]
  [../]
  [./linear2_var]
  [../]
[]

[AuxKernels]
  [./linear1_AuxK]
    type = FunctionAux
    variable = linear1_var
    function = linear1_fcn
  [../]
  [./linear2_AuxK]
    type = FunctionAux
    variable = linear2_var
    function = linear2_fcn
  [../]
[]


[Functions]
# This is just f = x
  [./linear1_fcn]
    type = PiecewiseMultilinear
    data_file = linear1.txt
  [../]
  [./linear1_answer]
    type = ParsedFunction
    value = x
  [../]

# This is a hat function
  [./linear2_fcn]
    type = PiecewiseMultilinear
    data_file = linear2.txt
  [../]
  [./linear2_answer]
    type = ParsedFunction
    value = min(x,1)+min(2-x,1)-1
  [../]

[]

[Postprocessors]
  [./linear1_pp]
    type = NodalL2Error
    function = linear1_answer
    variable = linear1_var
  [../]
  [./linear2_pp]
    type = NodalL2Error
    function = linear2_answer
    variable = linear2_var
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = oneDb
  hide = dummy
  csv = true
[]

modules/richards/test/tests/gravity_head_2/gh05.i

# unsaturated = true
# gravity = false
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = RandomIC
    min = 0.2
    max = 0.8
    variable = pwater
  [../]
  [./gas_ic]
    type = RandomIC
    min = 1.2
    max = 1.8
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((p0-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((p0-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh05
  csv = true
[]

modules/combined/test/tests/poro_mechanics/borehole_highres.i

# Poroelastic response of a borehole.
#
# HIGHRES VERSION: this version gives good agreement with the analytical solution, but it takes a while so is a "heavy" test
#
# A fully-saturated medium contains a fluid with a homogeneous porepressure,
# but an anisitropic insitu stress.  A infinitely-long borehole aligned with
# the $$z$$ axis is instanteously excavated.  The borehole boundary is
# stress-free and allowed to freely drain.  This problem is analysed using
# plane-strain conditions (no $$z$$ displacement).
#
# The solution in Laplace space is found in E Detournay and AHD Cheng "Poroelastic response of a borehole in a non-hydrostatic stress field".  International Journal of Rock Mechanics and Mining Sciences and Geomechanics Abstracts 25 (1988) 171-182.  In the small-time limit, the Laplace transforms may be performed.  There is one typo in the paper.  Equation (A4)'s final term should be -(a/r)\sqrt(4ct/(a^2\pi)), and not +(a/r)\sqrt(4ct/(a^2\pi)).
#
# Because realistic parameters are chosen (below),
# the residual for porepressure is much smaller than
# the residuals for the displacements.  Therefore the
# scaling parameter is chosen.  Also note that the
# insitu stresses are effective stresses, not total
# stresses, but the solution in the above paper is
# expressed in terms of total stresses.
#
# Here are the problem's parameters, and their values:
# Borehole radius.  a = 1
# Rock's Lame lambda.  la = 0.5E9
# Rock's Lame mu, which is also the Rock's shear modulus.  mu = G = 1.5E9
# Rock bulk modulus.  K = la + 2*mu/3 = 1.5E9
# Drained Poisson ratio.  nu = (3K - 2G)/(6K + 2G) = 0.125
# Rock bulk compliance.  1/K = 0.66666666E-9
# Fluid bulk modulus.  Kf = 0.7171315E9
# Fluid bulk compliance.  1/Kf = 1.39444444E-9
# Rock initial porosity.  phi0 = 0.3
# Biot coefficient.  alpha = 0.65
# Biot modulus.  M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 2E9
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.345E9
# Undrained Poisson ratio.  nuu = (3Ku - 2G)/(6Ku + 2G) = 0.2364
# Skempton coefficient.  B = alpha*M/Ku = 0.554
# Fluid mobility (rock permeability/fluid viscosity).  k = 1E-12

[Mesh]
  type = FileMesh
  file = borehole_highres_input.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  block = 1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
    scaling = 1E9  # Notice the scaling, to make porepressure's kernels roughly of same magnitude as disp's kernels
  [../]
[]

[GlobalParams]
  volumetric_locking_correction=true
[]

[ICs]
  [./initial_p]
    type = ConstantIC
    variable = porepressure
    value = 1E6
  [../]
[]

[BCs]
  [./fixed_outer_x]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = outer
  [../]
  [./fixed_outer_y]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = outer
  [../]
  [./plane_strain]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'zmin zmax'
  [../]
  [./borehole_wall]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = bh_wall
  [../]
[]



[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./tot_yy]
    type = ParsedAux
    args = 'stress_yy porepressure'
    execute_on = timestep_end
    variable = tot_yy
    function = 'stress_yy-0.65*porepressure'
  [../]
[]



[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PoroMechanicsCoupling
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PoroMechanicsCoupling
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PoroMechanicsCoupling
    variable = disp_z
    component = 2
  [../]
  [./poro_timederiv]
    type = PoroFullSatTimeDerivative
    variable = porepressure
  [../]
  [./darcy_flow]
    type = CoefDiffusion
    variable = porepressure
    coef = 1E-12
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5E9 1.5E9'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*1.5/3 = 1.5E9
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-1.35E6 0 0  0 -3.35E6 0  0 0 0' # remember this is the effective stress
    eigenstrain_name = ini_stress
  [../]
  [./no_plasticity]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./poro_material]
    type = PoroFullSatMaterial
    porosity0 = 0.3
    biot_coefficient = 0.65
    solid_bulk_compliance = 0.6666666666667E-9
    fluid_bulk_compliance = 1.3944444444444E-9
    constant_porosity = false
  [../]
[]

[Postprocessors]
  [./p00]
    type = PointValue
    variable = porepressure
    point = '1.00 0 0'
    outputs = csv_p
  [../]
  [./p01]
    type = PointValue
    variable = porepressure
    point = '1.01 0 0'
    outputs = csv_p
  [../]
  [./p02]
    type = PointValue
    variable = porepressure
    point = '1.02 0 0'
    outputs = csv_p
  [../]
  [./p03]
    type = PointValue
    variable = porepressure
    point = '1.03 0 0'
    outputs = csv_p
  [../]
  [./p04]
    type = PointValue
    variable = porepressure
    point = '1.04 0 0'
    outputs = csv_p
  [../]
  [./p05]
    type = PointValue
    variable = porepressure
    point = '1.05 0 0'
    outputs = csv_p
  [../]
  [./p06]
    type = PointValue
    variable = porepressure
    point = '1.06 0 0'
    outputs = csv_p
  [../]
  [./p07]
    type = PointValue
    variable = porepressure
    point = '1.07 0 0'
    outputs = csv_p
  [../]
  [./p08]
    type = PointValue
    variable = porepressure
    point = '1.08 0 0'
    outputs = csv_p
  [../]
  [./p09]
    type = PointValue
    variable = porepressure
    point = '1.09 0 0'
    outputs = csv_p
  [../]
  [./p10]
    type = PointValue
    variable = porepressure
    point = '1.10 0 0'
    outputs = csv_p
  [../]
  [./p11]
    type = PointValue
    variable = porepressure
    point = '1.11 0 0'
    outputs = csv_p
  [../]
  [./p12]
    type = PointValue
    variable = porepressure
    point = '1.12 0 0'
    outputs = csv_p
  [../]
  [./p13]
    type = PointValue
    variable = porepressure
    point = '1.13 0 0'
    outputs = csv_p
  [../]
  [./p14]
    type = PointValue
    variable = porepressure
    point = '1.14 0 0'
    outputs = csv_p
  [../]
  [./p15]
    type = PointValue
    variable = porepressure
    point = '1.15 0 0'
    outputs = csv_p
  [../]
  [./p16]
    type = PointValue
    variable = porepressure
    point = '1.16 0 0'
    outputs = csv_p
  [../]
  [./p17]
    type = PointValue
    variable = porepressure
    point = '1.17 0 0'
    outputs = csv_p
  [../]
  [./p18]
    type = PointValue
    variable = porepressure
    point = '1.18 0 0'
    outputs = csv_p
  [../]
  [./p19]
    type = PointValue
    variable = porepressure
    point = '1.19 0 0'
    outputs = csv_p
  [../]
  [./p20]
    type = PointValue
    variable = porepressure
    point = '1.20 0 0'
    outputs = csv_p
  [../]
  [./p21]
    type = PointValue
    variable = porepressure
    point = '1.21 0 0'
    outputs = csv_p
  [../]
  [./p22]
    type = PointValue
    variable = porepressure
    point = '1.22 0 0'
    outputs = csv_p
  [../]
  [./p23]
    type = PointValue
    variable = porepressure
    point = '1.23 0 0'
    outputs = csv_p
  [../]
  [./p24]
    type = PointValue
    variable = porepressure
    point = '1.24 0 0'
    outputs = csv_p
  [../]
  [./p25]
    type = PointValue
    variable = porepressure
    point = '1.25 0 0'
    outputs = csv_p
  [../]

  [./s00]
    type = PointValue
    variable = disp_x
    point = '1.00 0 0'
    outputs = csv_s
  [../]
  [./s01]
    type = PointValue
    variable = disp_x
    point = '1.01 0 0'
    outputs = csv_s
  [../]
  [./s02]
    type = PointValue
    variable = disp_x
    point = '1.02 0 0'
    outputs = csv_s
  [../]
  [./s03]
    type = PointValue
    variable = disp_x
    point = '1.03 0 0'
    outputs = csv_s
  [../]
  [./s04]
    type = PointValue
    variable = disp_x
    point = '1.04 0 0'
    outputs = csv_s
  [../]
  [./s05]
    type = PointValue
    variable = disp_x
    point = '1.05 0 0'
    outputs = csv_s
  [../]
  [./s06]
    type = PointValue
    variable = disp_x
    point = '1.06 0 0'
    outputs = csv_s
  [../]
  [./s07]
    type = PointValue
    variable = disp_x
    point = '1.07 0 0'
    outputs = csv_s
  [../]
  [./s08]
    type = PointValue
    variable = disp_x
    point = '1.08 0 0'
    outputs = csv_s
  [../]
  [./s09]
    type = PointValue
    variable = disp_x
    point = '1.09 0 0'
    outputs = csv_s
  [../]
  [./s10]
    type = PointValue
    variable = disp_x
    point = '1.10 0 0'
    outputs = csv_s
  [../]
  [./s11]
    type = PointValue
    variable = disp_x
    point = '1.11 0 0'
    outputs = csv_s
  [../]
  [./s12]
    type = PointValue
    variable = disp_x
    point = '1.12 0 0'
    outputs = csv_s
  [../]
  [./s13]
    type = PointValue
    variable = disp_x
    point = '1.13 0 0'
    outputs = csv_s
  [../]
  [./s14]
    type = PointValue
    variable = disp_x
    point = '1.14 0 0'
    outputs = csv_s
  [../]
  [./s15]
    type = PointValue
    variable = disp_x
    point = '1.15 0 0'
    outputs = csv_s
  [../]
  [./s16]
    type = PointValue
    variable = disp_x
    point = '1.16 0 0'
    outputs = csv_s
  [../]
  [./s17]
    type = PointValue
    variable = disp_x
    point = '1.17 0 0'
    outputs = csv_s
  [../]
  [./s18]
    type = PointValue
    variable = disp_x
    point = '1.18 0 0'
    outputs = csv_s
  [../]
  [./s19]
    type = PointValue
    variable = disp_x
    point = '1.19 0 0'
    outputs = csv_s
  [../]
  [./s20]
    type = PointValue
    variable = disp_x
    point = '1.20 0 0'
    outputs = csv_s
  [../]
  [./s21]
    type = PointValue
    variable = disp_x
    point = '1.21 0 0'
    outputs = csv_s
  [../]
  [./s22]
    type = PointValue
    variable = disp_x
    point = '1.22 0 0'
    outputs = csv_s
  [../]
  [./s23]
    type = PointValue
    variable = disp_x
    point = '1.23 0 0'
    outputs = csv_s
  [../]
  [./s24]
    type = PointValue
    variable = disp_x
    point = '1.24 0 0'
    outputs = csv_s
  [../]
  [./s25]
    type = PointValue
    variable = disp_x
    point = '1.25 0 0'
    outputs = csv_s
  [../]

  [./t00]
    type = PointValue
    variable = tot_yy
    point = '1.00 0 0'
    outputs = csv_t
  [../]
  [./t01]
    type = PointValue
    variable = tot_yy
    point = '1.01 0 0'
    outputs = csv_t
  [../]
  [./t02]
    type = PointValue
    variable = tot_yy
    point = '1.02 0 0'
    outputs = csv_t
  [../]
  [./t03]
    type = PointValue
    variable = tot_yy
    point = '1.03 0 0'
    outputs = csv_t
  [../]
  [./t04]
    type = PointValue
    variable = tot_yy
    point = '1.04 0 0'
    outputs = csv_t
  [../]
  [./t05]
    type = PointValue
    variable = tot_yy
    point = '1.05 0 0'
    outputs = csv_t
  [../]
  [./t06]
    type = PointValue
    variable = tot_yy
    point = '1.06 0 0'
    outputs = csv_t
  [../]
  [./t07]
    type = PointValue
    variable = tot_yy
    point = '1.07 0 0'
    outputs = csv_t
  [../]
  [./t08]
    type = PointValue
    variable = tot_yy
    point = '1.08 0 0'
    outputs = csv_t
  [../]
  [./t09]
    type = PointValue
    variable = tot_yy
    point = '1.09 0 0'
    outputs = csv_t
  [../]
  [./t10]
    type = PointValue
    variable = tot_yy
    point = '1.10 0 0'
    outputs = csv_t
  [../]
  [./t11]
    type = PointValue
    variable = tot_yy
    point = '1.11 0 0'
    outputs = csv_t
  [../]
  [./t12]
    type = PointValue
    variable = tot_yy
    point = '1.12 0 0'
    outputs = csv_t
  [../]
  [./t13]
    type = PointValue
    variable = tot_yy
    point = '1.13 0 0'
    outputs = csv_t
  [../]
  [./t14]
    type = PointValue
    variable = tot_yy
    point = '1.14 0 0'
    outputs = csv_t
  [../]
  [./t15]
    type = PointValue
    variable = tot_yy
    point = '1.15 0 0'
    outputs = csv_t
  [../]
  [./t16]
    type = PointValue
    variable = tot_yy
    point = '1.16 0 0'
    outputs = csv_t
  [../]
  [./t17]
    type = PointValue
    variable = tot_yy
    point = '1.17 0 0'
    outputs = csv_t
  [../]
  [./t18]
    type = PointValue
    variable = tot_yy
    point = '1.18 0 0'
    outputs = csv_t
  [../]
  [./t19]
    type = PointValue
    variable = tot_yy
    point = '1.19 0 0'
    outputs = csv_t
  [../]
  [./t20]
    type = PointValue
    variable = tot_yy
    point = '1.20 0 0'
    outputs = csv_t
  [../]
  [./t21]
    type = PointValue
    variable = tot_yy
    point = '1.21 0 0'
    outputs = csv_t
  [../]
  [./t22]
    type = PointValue
    variable = tot_yy
    point = '1.22 0 0'
    outputs = csv_t
  [../]
  [./t23]
    type = PointValue
    variable = tot_yy
    point = '1.23 0 0'
    outputs = csv_t
  [../]
  [./t24]
    type = PointValue
    variable = tot_yy
    point = '1.24 0 0'
    outputs = csv_t
  [../]
  [./t25]
    type = PointValue
    variable = tot_yy
    point = '1.25 0 0'
    outputs = csv_t
  [../]

  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = 2*t
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_monitor -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it -sub_pc_type -sub_pc_factor_shift_type'
    petsc_options_value = 'gmres asm 1E0 1E-10 200 500 lu NONZERO'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 0.3
  dt = 0.1
  #[./TimeStepper]
  #  type = PostprocessorDT
  #  postprocessor = dt
  #  dt = 0.003
  #[../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = borehole_highres
  exodus = true
  sync_times = '0.003 0.3'
  [./csv_p]
    file_base = borehole_highres_p
    type = CSV
  [../]
  [./csv_s]
    file_base = borehole_highres_s
    type = CSV
  [../]
  [./csv_t]
    file_base = borehole_highres_t
    type = CSV
  [../]
[]

modules/combined/test/tests/beam_eigenstrain_transfer/subapp_err_2.i

# SubApp with 2D model to test multi app vectorpostprocessor to aux var transfer

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 5
  xmin = 0.0
  xmax = 0.5
  ymin = 0.0
  ymax = 0.150080
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./temp]
  [../]
  [./axial_strain]
    order = FIRST
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t*(500.0)+300.0
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = SMALL
        incremental = true
        add_variables = true
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
  [../]
  [./axial_strain]
    type = RankTwoAux
    variable = axial_strain
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 298
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-9

  start_time = 0.0
  end_time = 0.075
  dt = 0.0125
  dtmin = 0.0001
[]

[Outputs]
  csv = true
  exodus = true
[]

[VectorPostprocessors]
  [./axial_str]
    type = LineValueSampler
    start_point = '0.5 0.0 0.0'
    end_point = '0.5 0.150080 0.0'
    variable = 'axial_strain axial_strain'
    num_points = 21
    sort_by = 'y'
  [../]
[]

[Postprocessors]
  [./end_disp]
    type = PointValue
    variable = disp_y
    point = '0.5 0.150080 0.0'
  [../]
[]

modules/stochastic_tools/test/tests/transfers/sampler_postprocessor/errors/require_stochastic_results.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = SobolSampler
    num_rows = 3
    distributions = 'uniform_left uniform_right'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
  []
[]

[Transfers]
  [runner]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
    execute_on = INITIAL
    check_multiapp_execute_on = false
  []
  [data]
    type = SamplerPostprocessorTransfer
    multi_app = sub
    sampler = sample
    to_vector_postprocessor = storage
    from_postprocessor = avg
    execute_on = timestep_end
    check_multiapp_execute_on = false
  []
[]

[VectorPostprocessors]
  [storage]
    type = ConstantVectorPostprocessor
    value = 0
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/dynamics/wave_1D/wave_newmark.i

# Wave propogation in 1D using Newmark time integration
#
# The test is for an 1D bar element of length 4m  fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the other end.
# beta and gamma are Newmark time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel +  K*disp = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# This equation is equivalent to:
#
# density*accel + Div Stress= 0
#
# The first term on the left is evaluated using the Inertial force kernel
# The last term on the left is evaluated using StressDivergenceTensors
#
# The displacement at the second, third and fourth node at t = 0.1 are
# -8.021501116638234119e-02, 2.073994362053969628e-02 and  -5.045094181261772920e-03, respectively

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.3025
    gamma = 0.6
    eta=0.0
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.3025
    gamma = 0.6
    eta=0.0
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.3025
    gamma = 0.6
    eta = 0.0
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 0
    index_j = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
    type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = bottom
    function = displacement_bc
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1'
  [../]

[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 6.0
  l_tol = 1e-12
  nl_rel_tol = 1e-12
  dt = 0.1
[]


[Functions]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp_1]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_2]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./disp_3]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./disp_4]
    type = NodalVariableValue
    nodeid = 14
    variable = disp_y
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

test/tests/time_steppers/timesequence_stepper/csvtimesequence.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax =  1
  ymin = -1
  ymax =  1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  end_time = 10
  [./TimeStepper]
    type = CSVTimeSequenceStepper
    file_name = timesequence.csv
    column_name = time1
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/examples/coal_mining/cosserat_mc_wp_sticky_longitudinal.i

# Strata deformation and fracturing around a coal mine
#
# A 2D geometry is used that simulates a longitudinal section of
# the coal mine.  The model is actually 3D, but the "x"
# dimension is only 10m long, meshed with 1 element, and
# there is no "x" displacement.  The mine is 400m deep
# and just the roof is studied (0<=z<=400).  The model sits
# between -300<=y<=1800.  The excavation sits in 0<=y<=1500.  The
# excavation height is 3m (ie, the excavation lies within
# 0<=z<=3).
#
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions for this elastic simulation are:
#  - disp_x = 0 everywhere
#  - disp_y = 0 at y=-300 and y=1800
#  - disp_z = 0 at z=0, but there is a time-dependent
#               Young's modulus that simulates excavation
#  - wc_x = 0 at y=300 and y=1800.
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa.  The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = -0.025*(300-z) MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg.  The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 3 MPa
# MC friction angle = 37 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
#
[Mesh]
   [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 1
    xmin = -5
    xmax = 5
    nz = 40
    zmin = 0
    zmax = 400
    bias_z = 1.1
    ny = 140 # 15m elements
    ymin = -300
    ymax = 1800
  []
  [left]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 11
    normal = '0 -1 0'
    input = generated_mesh
  []
  [right]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 12
    normal = '0 1 0'
    input = left
  []
  [front]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 13
    normal = '-1 0 0'
    input = right
  []
  [back]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 14
    normal = '1 0 0'
    input = front
  []
  [top]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 15
    normal = '0 0 1'
    input = back
  []
  [bottom]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 16
    normal = '0 0 -1'
    input = top
  []
  [excav]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '-5 0 0'
    top_right = '5 1500 3'
    input = bottom
  []
  [roof]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = 18
    normal = '0 0 1'
    input = excav
  []
[]

[GlobalParams]
  perform_finite_strain_rotations = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
[]

[Kernels]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_x
    component = 0
  [../]
  [./gravity]
    type = Gravity
    use_displaced_mesh = false
    variable = disp_z
    value = -10E-6 # remember this is in MPa
  [../]
[]


[AuxVariables]
  [./disp_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_shear]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_internal_parameter
    variable = mc_shear
  [../]
  [./mc_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = mc_plastic_internal_parameter
    variable = mc_tensile
  [../]
  [./wp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_internal_parameter
    variable = wp_shear
  [../]
  [./wp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_internal_parameter
    variable = wp_tensile
  [../]
  [./mc_shear_f]
    type = MaterialStdVectorAux
    index = 6
    property = mc_plastic_yield_function
    variable = mc_shear_f
  [../]
  [./mc_tensile_f]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_yield_function
    variable = mc_tensile_f
  [../]
  [./wp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_yield_function
    variable = wp_shear_f
  [../]
  [./wp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_yield_function
    variable = wp_tensile_f
  [../]
[]



[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '11 12'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '16'
    value = 0.0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = '11 12'
    value = 0.0
  [../]
  [./roof]
    type = StickyBC
    variable = disp_z
    min_value = -3.0
    boundary = '18'
  [../]
[]

[Functions]
  [./ini_xx]
    type = ParsedFunction
    value = '-0.8*2500*10E-6*(400-z)'
  [../]
  [./ini_zz]
    type = ParsedFunction
    value = '-2500*10E-6*(400-z)'
  [../]
  [./excav_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval slope'
    vals = '1.0   0    1500.0 1E-9  1      15'
    # excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
    # slope is the distance over which the modulus reduces from maxval to minval
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
  [../]
  [./density_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval'
    vals = '1.0   0    1500.0 0     2500'
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
  [../]
[]

[UserObjects]
  [./mc_coh_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 2.99 # MPa
    value_residual = 3.01 # MPa
    rate = 1.0
  [../]
  [./mc_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.65 # 37deg
  [../]
  [./mc_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.15 # 8deg
  [../]

  [./mc_tensile_str_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0 # MPa
    value_residual = 1.0 # MPa
    rate = 1.0
  [../]
  [./mc_compressive_str]
    type = TensorMechanicsHardeningCubic
    value_0 = 100 # Large!
    value_residual = 100
    internal_limit = 0.1
  [../]

  [./wp_coh_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_tan_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.36 # 20deg
  [../]
  [./wp_tan_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.18 # 10deg
  [../]

  [./wp_tensile_str_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_compressive_str_soften]
    type = TensorMechanicsHardeningCubic
    value_0 = 100
    value_residual = 1.0
    internal_limit = 1.0
  [../]
[]

[Materials]
  [./elasticity_tensor_0]
    type = ComputeLayeredCosseratElasticityTensor
    block = 0
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
  [../]
  [./elasticity_tensor_1]
    type = ComputeLayeredCosseratElasticityTensor
    block = 1
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
    elasticity_tensor_prefactor = excav_sideways
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    eigenstrain_name = ini_stress
    initial_stress = 'ini_xx 0 0  0 ini_xx 0  0 0 ini_zz'
  [../]

  [./stress_0]
    type = ComputeMultipleInelasticCosseratStress
    block = 0
    inelastic_models = 'mc wp'
    cycle_models = true
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./stress_1]
    # this is needed so as to correctly apply the initial stress
    type = ComputeMultipleInelasticCosseratStress
    block = 1
    inelastic_models = ''
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedMohrCoulombCosseratStressUpdate
    warn_about_precision_loss = false
    host_youngs_modulus = 8E3
    host_poissons_ratio = 0.25
    base_name = mc
    tensile_strength = mc_tensile_str_strong_harden
    compressive_strength = mc_compressive_str
    cohesion = mc_coh_strong_harden
    friction_angle = mc_fric
    dilation_angle = mc_dil
    max_NR_iterations = 100000
    smoothing_tol = 0.1 # MPa  # Must be linked to cohesion
    yield_function_tol = 1E-9 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    warn_about_precision_loss = false
    base_name = wp
    cohesion = wp_coh_harden
    tan_friction_angle = wp_tan_fric
    tan_dilation_angle = wp_tan_dil
    tensile_strength = wp_tensile_str_harden
    compressive_strength = wp_compressive_str_soften
    max_NR_iterations = 10000
    tip_smoother = 0.1
    smoothing_tol = 0.1 # MPa  # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0E-3
  [../]


  [./density_0]
    type = GenericConstantMaterial
    block = 0
    prop_names = density
    prop_values = 2500
  [../]
  [./density_1]
    type = GenericFunctionMaterial
    block = 1
    prop_names = density
    prop_values = density_sideways
  [../]
[]

[Postprocessors]
  [./subs]
    type = PointValue
    point = '0 0 400'
    variable = disp_z
    use_displaced_mesh = false
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options = '-snes_converged_reason'
  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'

  line_search = bt

  nl_abs_tol = 1e-3
  nl_rel_tol = 1e-5

  l_max_its = 30
  nl_max_its = 100

  start_time = 0.0
  dt = 0.01 # 1 element per step
  end_time = 1.0

[]

[Outputs]
  file_base = cosserat_mc_wp_sticky_longitudinal
  interval = 1
  print_linear_residuals = false
  exodus = true
  csv = true
  console = true
  #[./console]
  #  type = Console
  #  output_linear = false
  #[../]
[]

test/tests/transfers/transfer_on_final/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
    initial_condition = 1234
  []
  [v]
    initial_condition = 2458
  []
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 4
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [sub]
    type = TransientMultiApp
    input_files = sub.i
    execute_on = 'INITIAL TIMESTEP_END'
  []
[]

[Transfers]
  [from_sub]
    type = MultiAppCopyTransfer
    direction = from_multiapp
    source_variable = u
    variable = u
    multi_app = sub
    check_multiapp_execute_on = false
    execute_on = 'FINAL'
  []
  [to_sub]
    type = MultiAppCopyTransfer
    direction = to_multiapp
    source_variable = v
    variable = v
    multi_app = sub
    check_multiapp_execute_on = false
    execute_on = 'FINAL'
  []
[]

[Outputs]
  exodus = true
  [final]
    type = Exodus
    execute_on = 'FINAL'
    execute_input_on = 'NONE' # This is needed to avoid problems with creating a file w/o data during --recover testing
  []
[]

test/tests/scalar_kernels/ad_coupled_scalar/ad_coupled_scalar.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[ScalarKernels]
  [time]
    type = ODETimeDerivative
    variable = v
  []
  [flux_sink]
    type = PostprocessorSinkScalarKernel
    variable = v
    postprocessor = scale_flux
  []
[]

[BCs]
  [right]
    type = DirichletBC
    value = 0
    variable = u
    boundary = 'right'
  []
  [left]
    type = ADMatchedScalarValueBC
    variable = u
    v = v
    boundary = 'left'
  []
[]

[Variables]
  [u][]
  [v]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  []
[]

[Postprocessors]
  [flux]
    type = SideFluxIntegral
    variable = u
    diffusivity = 1
    boundary = 'left'
    execute_on = 'initial nonlinear linear timestep_end'
  []
  [scale_flux]
    type = ScalePostprocessor
    scaling_factor = -1
    value = flux
    execute_on = 'initial nonlinear linear timestep_end'
  []
[]

[Executioner]
  type = Transient
  dt = .1
  end_time = 1
  solve_type = PJFNK
  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
[]

modules/chemical_reactions/test/tests/aqueous_equilibrium/2species_without_action.i

# Simple equilibrium reaction example to illustrate the use of the AqueousEquilibriumReactions
# action.
# In this example, two primary species a and b are transported by diffusion and convection
# from the left of the porous medium, reacting to form two equilibrium species pa2 and pab
# according to the equilibrium reaction specified in the AqueousEquilibriumReactions block as:
#
#      reactions = '2a = pa2     2
#                   a + b = pab -2'
#
# where the 2 is the weight of the equilibrium species, the 2 on the RHS of the first reaction
# refers to the equilibrium constant (log10(Keq) = 2), and the -2 on the RHS of the second
# reaction equates to log10(Keq) = -2.
#
# This example is identical to 2species.i, except that it explicitly includes all AuxKernels
# and Kernels that are set up by the action in 2species.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
[]

[AuxVariables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pa2]
  [../]
  [./pab]
  [../]
[]

[AuxKernels]
  [./pa2eq]
    type = AqueousEquilibriumRxnAux
    variable = pa2
    v = a
    sto_v = 2
    log_k = 2
  [../]
  [./pabeq]
    type = AqueousEquilibriumRxnAux
    variable = pab
    v = 'a b'
    sto_v = '1 1'
    log_k = -2
  [../]
[]

[ICs]
  [./pressure]
    type = FunctionIC
    variable = pressure
    function = 2-x
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./a_conv]
    type = PrimaryConvection
    variable = a
    p = pressure
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./b_diff]
    type = PrimaryDiffusion
    variable = b
  [../]
  [./b_conv]
    type = PrimaryConvection
    variable = b
    p = pressure
  [../]
  [./a1eq]
    type = CoupledBEEquilibriumSub
    variable = a
    log_k = 2
    weight = 2
    sto_u = 2
  [../]
  [./a1diff]
    type = CoupledDiffusionReactionSub
    variable = a
    log_k = 2
    weight = 2
    sto_u = 2
  [../]
  [./a1conv]
    type = CoupledConvectionReactionSub
    variable = a
    log_k = 2
    weight = 2
    sto_u = 2
    p = pressure
  [../]
  [./a2eq]
    type = CoupledBEEquilibriumSub
    variable = a
    v = b
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./a2diff]
    type = CoupledDiffusionReactionSub
    variable = a
    v = b
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./a2conv]
    type = CoupledConvectionReactionSub
    variable = a
    v = b
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
    p = pressure
  [../]
  [./b2eq]
    type = CoupledBEEquilibriumSub
    variable = b
    v = a
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./b2diff]
    type = CoupledDiffusionReactionSub
    variable = b
    v = a
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./b2conv]
    type = CoupledConvectionReactionSub
    variable = b
    v = a
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
    p = pressure
  [../]
[]

[BCs]
  [./a_left]
    type = DirichletBC
    variable = a
    boundary = left
    value = 1.0e-2
  [../]
  [./a_right]
    type = ChemicalOutFlowBC
    variable = a
    boundary = right
  [../]
  [./b_left]
    type = DirichletBC
    variable = b
    boundary = left
    value = 1.0e-2
  [../]
  [./b_right]
    type = ChemicalOutFlowBC
    variable = b
    boundary = right
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-4 1e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-12
  start_time = 0.0
  end_time = 100
  dt = 10.0
[]

[Outputs]
  file_base = 2species_out
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cto12.i

# checking jacobian for nonlinear plasticity (single surface, smoothed MohrCoulomb)
# note: must have min_stepsize=1 otherwise the nonlinearities compound and make the jacobian more inaccurate


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-11
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '3 0 0  0 3 0  0 0 1.5'
    eigenstrain_name = ini_stress
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-11
    plastic_models = mc
    tangent_operator = nonlinear
    min_stepsize = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/solid_mechanics/test/tests/interaction_integral/interaction_integral_3d_as_2d.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with one element
#through the thickness, and calculates the J-Integrals using options
#to treat it as 2d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = crack_3d_as_2d.e
  partitioner = centroid
  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

#  [./pin_x]
#    type = DirichletBC
#    variable = disp_x
#    boundary = 200
#    value = 0.0
#  [../]
#
#  [./pin_y]
#    type = DirichletBC
#    variable = disp_y
#    boundary = 200
#    value = 0.0
#  [../]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

 # [./nocrack_y]
 #   type = DirichletBC
 #   variable = disp_y
 #   boundary = 600
 #   value = 0.0
 # [../]

# [./no_x]
#   type = DirichletBC
#   variable = disp_x
#   boundary = 500
#   value = 0.0
# [../]
# [./no_y]
#   type = DirichletBC
#   variable = disp_y
#   boundary = 500
#   value = 0.0
# [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = interaction_integral_3d_as_2d_out
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform1.i

# Using CappedMohrCoulomb with tensile failure only
# checking for small deformation
# A single element is stretched by 1E-6m in z direction, and by small amounts in x and y directions
# stress_zz = Youngs Modulus*Strain = 2E6*1E-6 = 2 Pa
# tensile_strength is set to 1Pa
# Then the final stress should return to the yeild surface and the minimum principal stress value should be 1pa.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.2E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.0
    yield_function_tol = 1.0E-9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform1
  csv = true
[]

modules/porous_flow/test/tests/infiltration_and_drainage/rd02.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 120
  ny = 1
  xmin = 0
  xmax = 6
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1 10 500 5000 50000'
    x = '0 10 100 1000 10000 500000'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = pressure
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.336
    alpha = 1.43e-4
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e7
      viscosity = 1.01e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pressure
    capillary_pressure = pc
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityVG
    m = 0.336
    seff_turnover = 0.99
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.33
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0.295E-12 0 0  0 0.295E-12 0  0 0 0.295E-12'
  [../]
[]

[Variables]
  [./pressure]
    initial_condition = 0.0
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pressure
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pressure
    gravity = '-10 0 0'
  [../]
[]

[AuxVariables]
  [./SWater]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./SWater]
    type = MaterialStdVectorAux
    property = PorousFlow_saturation_qp
    index = 0
    variable = SWater
  [../]
[]

[BCs]
  [./base]
    type = DirichletBC
    boundary = left
    value = 0.0
    variable = pressure
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10      1E-10      10'
  [../]
[]

[VectorPostprocessors]
  [./swater]
    type = LineValueSampler
    variable = SWater
    start_point = '0 0 0'
    end_point = '6 0 0'
    sort_by = x
    num_points = 121
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 345600

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = rd02
  [./exodus]
    type = Exodus
    execute_on = 'initial final'
  [../]
  [./along_line]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/geomsearch/2d_moving_penetration/pl_test4qns.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1.e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test4qns_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking_rotation.i

# This test is to ensure that the smeared cracking model correctly handles finite
# rotation of cracked elements.

# This consists of a single element that is first  subjected to tensile loading
# in the y-direction via a prescribed displacement. This loading is sufficiently
# high to crack the material in that direction, but not completely unload. The
# prescribed displacement is then reversed so that the element is returned to its
# original configuration.

# In the next phase of the analysis, this element is then rotated 90 degrees by
# prescribing the displacement of the bottom of the element. The prescribed
# displacement BC used to crack the element in the first phase is deactivated.

# Once the element is fully rotated, a new BC is activated on what was originally
# the top surface (but is now the surface on the right hand side) to pull in
# the x-direction.

# If everything is working correctly, the model should re-load on the original
# crack (which should be rotated along with the elemnent) up to the peak stress
# in the first phase of the analysis, and then continue the unloading process
# as the crack strains continue to increase. Throughout this analysis, there should
# only be a single crack, as manifested in the crack_flags variables.

[Mesh]
  file = cracking_test.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[AuxVariables]
  [./crack_flags1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./crack_flags2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./crack_flags3]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./crack_flags1]
    type = MaterialRealVectorValueAux
    property = crack_flags
    variable = crack_flags1
    component = 0
  [../]
  [./crack_flags2]
    type = MaterialRealVectorValueAux
    property = crack_flags
    variable = crack_flags2
    component = 1
  [../]
  [./crack_flags3]
    type = MaterialRealVectorValueAux
    property = crack_flags
    variable = crack_flags3
    component = 2
  [../]
[]

[BCs]
  [./x_pin]
    type = DirichletBC
    variable = disp_x
    boundary = '15 16'
    value = 0.0
  [../]
  [./y_pin]
    type = DirichletBC
    variable = disp_y
    boundary = '15 16'
    value = 0.0
  [../]
  [./z_all]
    type = DirichletBC
    variable = disp_z
    boundary = '11 12 13 14 15 16 17 18'
    value = 0.0
  [../]
  [./x_lb]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '11 12'
    function = 'if(t<10,0,if(t>=100,1,1-cos((t-10)*pi/180)))'
  [../]
  [./y_lb]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = '11 12'
    function = 'if(t<10,0,if(t>=100,1,sin((t-10)*pi/180)))'
  [../]
  [./x_lt]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '13 14'
    function = '2+(t-100)*0.01'
  [../]
  [./x_rt]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '17 18'
    function = '1+(t-100)*0.01'
  [../]
  [./top_pull]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = '13 14 17 18'
    function = 'if(t<5,t*0.01,0.05-(t-5)*0.01)'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 100.e9
    poissons_ratio = 0.
  [../]
  [./cracking_stress]
    type = ComputeSmearedCrackingStress
    shear_retention_factor = 0.1
    cracking_stress = 3.e9
    softening_models = exponential_softening
  [../]
  [./exponential_softening]
    type = ExponentialSoftening
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type'
  petsc_options_value = '101                lu'
  line_search = 'none'

  l_max_its = 100
  l_tol = 1e-5

  nl_max_its = 100
  nl_abs_tol = 1e-5
  nl_rel_tol = 1e-12

  start_time = 0
  end_time = 110
  dt = 1
[]

[Controls]
  [./p1]
    type = TimePeriod
    start_time = 0.0
    end_time = 10.0
    disable_objects = 'BCs/x_lt BCs/x_rt'
    enable_objects = 'BCs/top_pull'
    reverse_on_false = false
    execute_on = 'initial timestep_begin'
  [../]
  [./p2]
    type = TimePeriod
    start_time = 10.0
    end_time = 101.0
    disable_objects = 'BCs/x_lt BCs/x_rt BCs/top_pull'
    reverse_on_false = false
    execute_on = 'initial timestep_begin'
  [../]
  [./p3]
    type = TimePeriod
    start_time = 101.0
    end_time = 110.0
    enable_objects = 'BCs/x_lt BCs/x_rt'
    disable_objects = 'BCs/top_pull'
    reverse_on_false = false
    execute_on = 'initial timestep_begin'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/moving_interface/verification/1D_xy_lsdep1mat.i

# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality:                                   quasi-1D
# Coordinate System:                                      xy
# Material Numbers/Types: level set dep 1 material, 2 region
# Element Order:                                         1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
#   A simple transient heat transfer problem in Cartesian coordinates designed
#   with the Method of Manufactured Solutions. This problem was developed to
#   verify XFEM performance in the presence of a moving interface for linear
#   element models that can be exactly evaluated by FEM/Moose. Both the
#   temperature solution and level set function are designed to be linear to
#   attempt to minimize error between the Moose/exact solution and XFEM results.
#   Thermal conductivity is dependent upon the value of the level set function
#   at each timestep.
# Results:
#   The temperature at the left boundary (x=0) exhibits the largest difference
#   between the FEM/Moose solution and XFEM results. We present the XFEM
#   results at this location with 10 digits of precision:
#     Time    Expected Temperature    XFEM Calculated Temperature
#      0.2                  440         440
#      0.4                  480         479.9999722
#      0.6                  520         519.9998726
#      0.8                  560         559.9997314
#      1.0                  600         599.9996885
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 1
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 0.5
  elem_type = QUAD4
[]

[XFEM]
  qrule = moment_fitting
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
    heal_always = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./heat_cond]
    type = MatDiffusion
    variable = u
    diffusivity = diffusion_coefficient
  [../]
  [./vol_heat_src]
    type = BodyForce
    variable = u
    function = src_func
  [../]
  [./mat_time_deriv]
    type = TestMatTimeDerivative
    variable = u
    mat_prop_value = rhoCp
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    geometric_cut_userobject = 'level_set_cut_uo'
    use_penalty = true
    alpha = 1e5
  [../]
[]

[Functions]
  [./src_func]
    type = ParsedFunction
    value = 'rhoCp*(-200*x+200)-(0.05*200*t/1.04)'
    vars = 'rhoCp'
    vals = 10
  [../]
  [./neumann_func]
    type = ParsedFunction
    value = '((0.05/1.04)*(1-(x-0.04)-0.2*t) + 1.5)*200*t'
  [../]
  [./k_func]
    type = ParsedFunction
    value = '(0.05/1.04)*(1-(x-0.04)-0.2*t) + 1.5'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = '1.04 - x - 0.2*t'
  [../]
[]

[Materials]
  [./mat_time_deriv_prop]
    type = GenericConstantMaterial
    prop_names = 'rhoCp'
    prop_values = 10
  [../]
  [./therm_cond_prop]
    type = GenericFunctionMaterial
    prop_names = 'diffusion_coefficient'
    prop_values = 'k_func'
  [../]
[]

[BCs]
  [./left_u]
    type = FunctionNeumannBC
    variable = u
    boundary = 'left'
    function = neumann_func
  [../]
  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 400
  [../]
[]

[ICs]
  [./u_ic]
    type = ConstantIC
    value = 400
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_tol = 1.0e-6
  nl_max_its = 15
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-9

  start_time = 0.0
  dt = 0.2
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = 'initial timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/simplest_contact/sm/simplest_contact_test_sm.i

[Mesh]
  file = simplest_contact.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 2
    paired_boundary = 3
  [../]
[]

[Constraints]
  [./contact_x]
    type = MultiDContactConstraint
    variable = disp_x
    master_variable = disp_x
    component = 0
    slave = 2
    master = 3
    penalty = 1e6
  [../]

  [./contact_y]
    type = MultiDContactConstraint
    variable = disp_y
    master_variable = disp_y
    component = 1
    slave = 2
    master = 3
    penalty = 1e6
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[] # BCs

[Materials]
  [./stiffStuff1]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[] # Materials


[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'


  line_search = 'none'


#  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
#  petsc_options_value = 'hypre    boomeramg      101'

  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[] # Executioner

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Output

modules/phase_field/test/tests/misc/interface_flux.i

#
# This test demonstrates an InterfaceKernel (InterfaceDiffusionFlux) that can
# replace a pair of integrated DiffusionFluxBC boundary conditions.
#

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 20
    ny = 10
    ymax = 0.5
  []
  [./box1]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '0.51 1 0'
    input = gen
  [../]
  [./box2]
    type = SubdomainBoundingBoxGenerator
    block_id = 2
    bottom_left = '0.49 0 0'
    top_right = '1 1 0'
    input = box1
  [../]
  [./iface_u]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = 1
    paired_block = 2
    new_boundary = 10
    input = box2
  [../]
[]

[Variables]
  [./u2]
    block = 1
    [./InitialCondition]
      type = FunctionIC
      function = 'r:=sqrt((x-0.4)^2+(y-0.5)^2);if(r<0.05,5,1)'
    [../]
  [../]
  [./v2]
    block = 2
    [./InitialCondition]
      type = FunctionIC
      function = 'r:=sqrt((x-0.7)^2+(y-0.5)^2);if(r<0.05,5,1)'
    [../]
  [../]
[]

[Kernels]
  [./u2_diff]
    type = Diffusion
    variable = u2
    block = 1
  [../]
  [./u2_dt]
    type = TimeDerivative
    variable = u2
    block = 1
  [../]
  [./v2_diff]
    type = Diffusion
    variable = v2
    block = 2
  [../]
  [./v2_dt]
    type = TimeDerivative
    variable = v2
    block = 2
  [../]
[]

[InterfaceKernels]
  [./iface]
    type = InterfaceDiffusionBoundaryTerm
    boundary = 10
    variable = u2
    neighbor_var = v2
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.002
  num_steps = 6
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
[]

modules/porous_flow/test/tests/fluidstate/waterncg_nonisothermal.i

[Mesh]
  [./mesh]
    type = GeneratedMeshGenerator
    dim = 2
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pgas]
    initial_condition = 1e6
  [../]
  [./z]
    initial_condition = 0.25
  [../]
  [./temperature]
    initial_condition = 70
  [../]
[]

[AuxVariables]
  [./pressure_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./internal_energy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./internal_energy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./pressure_water]
    type = PorousFlowPropertyAux
    variable = pressure_water
    property = pressure
    phase = 0
    execute_on = timestep_end
  [../]
  [./pressure_gas]
    type = PorousFlowPropertyAux
    variable = pressure_gas
    property = pressure
    phase = 1
    execute_on = timestep_end
  [../]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation_water
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./density_water]
    type = PorousFlowPropertyAux
    variable = density_water
    property = density
    phase = 0
    execute_on = timestep_end
  [../]
  [./density_gas]
    type = PorousFlowPropertyAux
    variable = density_gas
    property = density
    phase = 1
    execute_on = timestep_end
  [../]
  [./viscosity_water]
    type = PorousFlowPropertyAux
    variable = viscosity_water
    property = viscosity
    phase = 0
    execute_on = timestep_end
  [../]
  [./viscosity_gas]
    type = PorousFlowPropertyAux
    variable = viscosity_gas
    property = viscosity
    phase = 1
    execute_on = timestep_end
  [../]
  [./enthalpy_water]
    type = PorousFlowPropertyAux
    variable = enthalpy_water
    property = enthalpy
    phase = 0
    execute_on = timestep_end
  [../]
  [./enthalpy_gas]
    type = PorousFlowPropertyAux
    variable = enthalpy_gas
    property = enthalpy
    phase = 1
    execute_on = timestep_end
  [../]
  [./internal_energy_water]
    type = PorousFlowPropertyAux
    variable = internal_energy_water
    property = internal_energy
    phase = 0
    execute_on = timestep_end
  [../]
  [./internal_energy_gas]
    type = PorousFlowPropertyAux
    variable = internal_energy_gas
    property = internal_energy
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1_water]
    type = PorousFlowPropertyAux
    variable = x1_water
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./x1_gas]
    type = PorousFlowPropertyAux
    variable = x1_gas
    property = mass_fraction
    phase = 1
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./x0_water]
    type = PorousFlowPropertyAux
    variable = x0_water
    property = mass_fraction
    phase = 0
    fluid_component = 0
    execute_on = timestep_end
  [../]
  [./x0_gas]
    type = PorousFlowPropertyAux
    variable = x0_gas
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = timestep_end
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
  [./heat]
    type = TimeDerivative
    variable = temperature
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z '
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowWaterNCG
    water_fp = water
    gas_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    temperature = temperature
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./density_water]
    type = ElementIntegralVariablePostprocessor
    variable = density_water
  [../]
  [./density_gas]
    type = ElementIntegralVariablePostprocessor
    variable = density_gas
  [../]
  [./viscosity_water]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_water
  [../]
  [./viscosity_gas]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_gas
  [../]
  [./enthalpy_water]
    type = ElementIntegralVariablePostprocessor
    variable = enthalpy_water
  [../]
  [./enthalpy_gas]
    type = ElementIntegralVariablePostprocessor
    variable = enthalpy_gas
  [../]
  [./internal_energy_water]
    type = ElementIntegralVariablePostprocessor
    variable = internal_energy_water
  [../]
  [./internal_energy_gas]
    type = ElementIntegralVariablePostprocessor
    variable = internal_energy_gas
  [../]
  [./x0_water]
    type = ElementIntegralVariablePostprocessor
    variable = x0_water
  [../]
  [./x1_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x1_gas
  [../]
  [./x0_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x0_gas
  [../]
  [./sg]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_gas
  [../]
  [./sw]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_water
  [../]
  [./pwater]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_water
  [../]
  [./pgas]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_gas
  [../]
  [./x0mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    phase = '0 1'
  [../]
  [./x1mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = '0 1'
  [../]
[]

[Outputs]
  csv = true
  execute_on = timestep_end
[]

test/tests/kernels/simple_transient_diffusion/ill_conditioned_simple_diffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = MatDiffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    preset = false
    boundary = left
    value = 0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = right
    function = constant
  [../]
[]

[Functions]
  [constant]
    type = ParsedFunction
    value = '1'
  []
  [ramp]
    type = ParsedFunction
    value = 't'
  []
[]


[Materials]
  active = 'constant'
  [constant]
    type = GenericConstantMaterial
    prop_names = 'D'
    prop_values = '1e20'
  []
  [function]
    type = GenericFunctionMaterial
    prop_names = 'D'
    prop_values = '10^(t-1)'
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 2
  dtmin = 2
  solve_type = NEWTON
  petsc_options = '-pc_svd_monitor -ksp_view_pmat -snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -snes_stol'
  petsc_options_value = 'svd      0'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/examples/coal_mining/cosserat_elastic.i

# Strata deformation and fracturing around a coal mine
#
# A 2D geometry is used that simulates a transverse section of
# the coal mine.  The model is actually 3D, but the "x"
# dimension is only 10m long, meshed with 1 element, and
# there is no "x" displacement.  The mine is 400m deep
# and just the roof is studied (0<=z<=400).  The model sits
# between 0<=y<=450.  The excavation sits in 0<=y<=150.  This
# is a "half model": the boundary conditions are such that
# the model simulates an excavation sitting in -150<=y<=150
# inside a model of the region -450<=y<=450.  The
# excavation height is 3m (ie, the excavation lies within
# 0<=z<=3).
#
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions for this elastic simulation are:
#  - disp_x = 0 everywhere
#  - disp_y = 0 at y=0 and y=450
#  - disp_z = 0 for y>150
#  - wc_x = 0 at y=0 and y=450.
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa.  The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = -0.025*(300-z) MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg.  The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# This is an elastic simulation, but the weak-plane and Drucker-Prager
# parameters and AuxVariables may be found below.  They are irrelevant
# in this simulation.  The weak-plane and Drucker-Prager cohesions,
# tensile strengths and compressive strengths have been set very high
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
#
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 1
    xmin = -5
    xmax = 5
    nz = 40
    zmin = 0
    zmax = 403.003
    bias_z = 1.1
    ny = 30 # make this a multiple of 3, so y=150 is at a node
    ymin = 0
    ymax = 450
  []
  [left]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 11
    normal = '0 -1 0'
    input = generated_mesh
  []
  [right]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 12
    normal = '0 1 0'
    input = left
  []
  [front]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 13
    normal = '-1 0 0'
    input = right
  []
  [back]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 14
    normal = '1 0 0'
    input = front
  []
  [top]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 15
    normal = '0 0 1'
    input = back
  []
  [bottom]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 16
    normal = '0 0 -1'
    input = top
  []
  [excav]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '-5 0 0'
    top_right = '5 150 3'
    input = bottom
  []
  [roof]
    type = SideSetsBetweenSubdomainsGenerator
    new_boundary = 21
    master_block = 0
    paired_block = 1
    input = excav
  []
  [hole]
    type = BlockDeletionGenerator
    block_id = 1
    input = roof
  []
[]

[GlobalParams]
  block = 0
  perform_finite_strain_rotations = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
[]

[Kernels]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_x
    component = 0
  [../]
  [./gravity]
    type = Gravity
    use_displaced_mesh = false
    variable = disp_z
    value = -10E-6 # remember this is in MPa
  [../]
[]


[AuxVariables]
  [./disp_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./dp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = dp_plastic_internal_parameter
    variable = dp_shear
  [../]
  [./dp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = dp_plastic_internal_parameter
    variable = dp_tensile
  [../]
  [./wp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_internal_parameter
    variable = wp_shear
  [../]
  [./wp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_internal_parameter
    variable = wp_tensile
  [../]
  [./dp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = dp_plastic_yield_function
    variable = dp_shear_f
  [../]
  [./dp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = dp_plastic_yield_function
    variable = dp_tensile_f
  [../]
  [./wp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_yield_function
    variable = wp_shear_f
  [../]
  [./wp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_yield_function
    variable = wp_tensile_f
  [../]
[]



[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '11 12'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '16'
    value = 0.0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = '11 12'
    value = 0.0
  [../]
[]

[Functions]
  [./ini_xx]
    type = ParsedFunction
    value = '-0.8*2500*10E-6*(403.003-z)'
  [../]
  [./ini_zz]
    type = ParsedFunction
    value = '-2500*10E-6*(403.003-z)'
  [../]
[]

[UserObjects]
  [./dp_coh_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 2.9 # MPa
    value_residual = 3.1 # MPa
    rate = 1.0
  [../]
  [./dp_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.65 # 37deg
  [../]
  [./dp_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.65
  [../]

  [./dp_tensile_str_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0 # MPa
    value_residual = 1.4 # MPa
    rate = 1.0
  [../]
  [./dp_compressive_str]
    type = TensorMechanicsHardeningConstant
    value = 1.0E3 # Large!
  [../]

  [./drucker_prager_model]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = dp_coh_strong_harden
    mc_friction_angle = dp_fric
    mc_dilation_angle = dp_dil
    internal_constraint_tolerance = 1 # irrelevant here
    yield_function_tolerance = 1      # irrelevant here
  [../]

  [./wp_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E12
  [../]
  [./wp_tan_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.36 # 20deg
  [../]
  [./wp_tan_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.18 # 10deg
  [../]

  [./wp_tensile_str]
    type = TensorMechanicsHardeningConstant
    value = 1E12
  [../]
  [./wp_compressive_str]
    type = TensorMechanicsHardeningConstant
    value = 1E12
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = 'ini_xx 0 0  0 ini_xx 0  0 0 ini_zz'
    eigenstrain_name = ini_stress
  [../]

  [./stress]
    # this is needed so as to correctly apply the initial stress
    type = ComputeMultipleInelasticCosseratStress
    block = 0
    inelastic_models = ''
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./dp]
    type = CappedDruckerPragerCosseratStressUpdate
    block = 0
    warn_about_precision_loss = false
    host_youngs_modulus = 8E3
    host_poissons_ratio = 0.25
    base_name = dp
    DP_model = drucker_prager_model
    tensile_strength = dp_tensile_str_strong_harden
    compressive_strength = dp_compressive_str
    max_NR_iterations = 100000
    tip_smoother = 0.1E1
    smoothing_tol = 0.1E1 # MPa  # Must be linked to cohesion
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    block = 0
    warn_about_precision_loss = false
    base_name = wp
    cohesion = wp_coh
    tan_friction_angle = wp_tan_fric
    tan_dilation_angle = wp_tan_dil
    tensile_strength = wp_tensile_str
    compressive_strength = wp_compressive_str
    max_NR_iterations = 10000
    tip_smoother = 0.1
    smoothing_tol = 0.1 # MPa  # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0E-3
  [../]


  [./density]
    type = GenericConstantMaterial
    prop_names = density
    prop_values = 2500
  [../]
[]

[Postprocessors]
  [./subs_max]
    type = PointValue
    point = '0 0 403.003'
    variable = disp_z
    use_displaced_mesh = false
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient

  solve_type = 'Linear'

  petsc_options = '-snes_converged_reason'
  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'

  line_search = bt

  nl_abs_tol = 1e-3
  nl_rel_tol = 1e-5

  l_max_its = 30
  nl_max_its = 1000

  start_time = 0.0
  dt = 1.0
  end_time = 1.0

[]

[Outputs]
  file_base = cosserat_elastic
  interval = 1
  print_linear_residuals = false
  exodus = true
  csv = true
  console = true
  #[./console]
  #  type = Console
  #  output_linear = false
  #[../]
[]

modules/tensor_mechanics/test/tests/stress_recovery/patch/patch.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  elem_type = QUAD9
  uniform_refine = 0
[]

[Variables]
  [disp_x]
    order = SECOND
    family = LAGRANGE
  []
  [disp_y]
    order = SECOND
    family = LAGRANGE
  []
[]

[AuxVariables]
  [stress_xx]
    order = FIRST
    family = MONOMIAL
  []
  [stress_yy]
    order = FIRST
    family = MONOMIAL
  []
  [stress_xx_recovered]
    order = SECOND
    family = LAGRANGE
  []
  [stress_yy_recovered]
    order = SECOND
    family = LAGRANGE
  []
[]

[AuxKernels]
  [stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = 'timestep_end'
  []
  [stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = 'timestep_end'
  []
  [stress_xx_recovered]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx_recovered
    index_i = 0
    index_j = 0
    execute_on = 'timestep_end'
  []
  [stress_yy_recovered]
    type = RankTwoAux
    patch_polynomial_order = SECOND
    rank_two_tensor = stress
    variable = stress_yy_recovered
    index_i = 1
    index_j = 1
    execute_on = 'timestep_end'
  []
[]

[Kernels]
  [solid_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  []
  [solid_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  []
[]

[Materials]
  [strain]
    type = ComputeSmallStrain
  []
  [Cijkl]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 2.1e+5
  []
  [stress]
    type = ComputeLinearElasticStress
  []
[]

[BCs]
  [top_xdisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'top'
    function = 0
  []
  [top_ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'top'
    function = t
  []
  [bottom_xdisp]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'bottom'
    function = 0
  []
  [bottom_ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'bottom'
    function = 0
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
    ksp_norm = default
  []
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-ksp_type -pc_type'
  petsc_options_value = 'preonly   lu'
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 30
  dt = 0.01
  dtmin = 1e-11
  start_time = 0
  end_time = 0.05
[]

[Outputs]
  interval = 1
  exodus = true
  print_linear_residuals = false
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/small_deform3.i

# apply a number of "random" configurations and
# check that the algorithm returns to the yield surface
#
# must be careful here - we cannot put in arbitrary values of C_ijkl, otherwise the condition
# df/dsigma * C * flow_dirn < 0 for some stresses
# The important features that must be obeyed are:
# 0 = C_0222 = C_1222  (holds for transversely isotropic, for instance)
# C_0212 < C_0202 = C_1212 (holds for transversely isotropic)
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  # the following are "random" deformations
  # each is O(1E-5) to keep deformations small
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = '(sin(0.1*t)+x)/1E5'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = '(cos(t)+x*y)/1E5'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 'sin(0.4321*t)*x*y*z/1E5'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./yield_fcn_at_zero]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'yield_fcn_at_zero'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E3
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5773503
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.08748866
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 100
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    # the following is transversely isotropic, i think.
    fill_method = symmetric9
    C_ijkl = '3E9 1E9 3E9 3E9 3E9 6E9 1E9 1E9 9E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    max_NR_iterations = 100
    ep_plastic_tolerance = 1E-3
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1E4
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/richards/test/tests/user_objects/uo3.i

# Seff User objects give the correct value
# Sat User objects give the correct value
#
# If you want to add another test for another UserObject
# then add the UserObject, add a Function defining the expected result,
# add an AuxVariable and AuxKernel that will record the UserObjects value
# and finally add a NodalL2Error that compares this with the Function
#
# Here pressure is x where x runs between -5E6 and 5E6

[UserObjects]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-6
  [../]
  [./Seff1BWsmall]
    type = RichardsSeff1BWsmall
    Sn = 0.0
    Ss = 1.0
    C = 1.01
    las = 1E5
  [../]
  [./Seff1RSC]
    type = RichardsSeff1RSC
    oil_viscosity = 4.0
    scale_ratio = 1E6
    shift = -2E6
  [../]
  [./Seff1VGcut]
    type = RichardsSeff1VGcut
    m = 0.8
    al = 1E-6
    p_cut = -1E6
  [../]

  # following are unimportant in this test
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E6
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.10101
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.054321
    sum_s_res = 0.054321
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E5
  [../]
[]

[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = x
  [../]

  [./answer_Seff1VG]
    type = ParsedFunction
    value = (1+max((-x)*al,0)^(1/(1-m)))^(-m)
    vars = 'al m'
    vals = '1E-6 0.8'
  [../]
  [./answer_dSeff1VG]
    type = GradParsedFunction
    direction = '1 0 0'
    value = (1+max((-x)*al,0)^(1/(1-m)))^(-m)
    vars = 'al m'
    vals = '1E-6 0.8'
  [../]
  [./answer_d2Seff1VG]
    type = Grad2ParsedFunction
    direction = '1 0 0'
    value = (1+max((-x)*al,0)^(1/(1-m)))^(-m)
    vars = 'al m'
    vals = '1E-6 0.8'
  [../]

  [./answer_Seff1BW]
    type = PiecewiseLinear
    format = columns
    data_file = satBW.csv
    axis = x
  [../]
  [./answer_Seff1BWprime]
    type = PiecewiseLinear
    format = columns
    data_file = satBWprime.csv
    axis = x
  [../]
  [./answer_Seff1BW2prime]
    type = PiecewiseLinear
    format = columns
    data_file = satBW2prime.csv
    axis = x
  [../]

  [./answer_Seff1RSC]
    type = ParsedFunction
    value = (1+exp((-x-shift)/scale))^(-0.5)
    vars = 'shift scale'
    vals = '-2E6 1E6'
  [../]
  [./answer_dSeff1RSC]
    type = GradParsedFunction
    direction = '1 0 0'
    value = (1+exp((-x-shift)/scale))^(-0.5)
    vars = 'shift scale'
    vals = '-2E6 1E6'
  [../]
  [./answer_d2Seff1RSC]
    type = Grad2ParsedFunction
    direction = '1 0 0'
    value = (1+exp((-x-shift)/scale))^(-0.5)
    vars = 'shift scale'
    vals = '-2E6 1E6'
  [../]

  [./answer_Seff1VGcut]
    type = ParsedFunction
    value = if(x<pcut,scut+dscut*(x-pcut),(1+max((-x)*al,0)^(1/(1-m)))^(-m))
    vars = 'al m pcut scut dscut'
    vals = '1E-6 0.8 -1E6 0.574349177498517 1.14869835499703e-06'
  [../]
  [./answer_dSeff1VGcut]
    type = GradParsedFunction
    direction = '1 0 0'
    value = if(x<pcut,scut+dscut*(x-pcut),(1+max((-x)*al,0)^(1/(1-m)))^(-m))
    vars = 'al m pcut scut dscut'
    vals = '1E-6 0.8 -1E6 0.574349177498517 1.14869835499703e-06'
  [../]
  [./answer_d2Seff1VGcut]
    type = Grad2ParsedFunction
    direction = '1 0 0'
    value = if(x<pcut,scut+dscut*(x-pcut),(1+max((-x)*al,0)^(1/(1-m)))^(-m))
    vars = 'al m pcut scut dscut'
    vals = '1E-6 0.8 -1E6 0.574349177498517 1.14869835499703e-06'
  [../]

  [./answer_Sat]
    type = ParsedFunction
    value = sres+((1-sumsres)*((1+max((-x)*al,0)^(1/(1-m)))^(-m)))
    vars = 'al m sres sumsres'
    vals = '1E-6 0.8 0.054321 0.054321'
  [../]
  [./answer_dSat]
    type = ParsedFunction
    value = 1-sumsres
    vars = 'sumsres'
    vals = '0.054321'
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
  [./dSeff1VG_Aux]
  [../]
  [./d2Seff1VG_Aux]
  [../]

  [./Seff1BWsmall_Aux]
  [../]
  [./dSeff1BWsmall_Aux]
  [../]
  [./d2Seff1BWsmall_Aux]
  [../]

  [./Seff1RSC_Aux]
  [../]
  [./dSeff1RSC_Aux]
  [../]
  [./d2Seff1RSC_Aux]
  [../]

  [./Seff1VGcut_Aux]
  [../]
  [./dSeff1VGcut_Aux]
  [../]
  [./d2Seff1VGcut_Aux]
  [../]

  [./Sat_Aux]
  [../]
  [./dSat_Aux]
  [../]

  [./check_Aux]
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
  [./dSeff1VG_AuxK]
    type = RichardsSeffPrimeAux
    variable = dSeff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
    wrtnum = 0
  [../]
  [./d2Seff1VG_AuxK]
    type = RichardsSeffPrimePrimeAux
    variable = d2Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
    wrtnum1 = 0
    wrtnum2 = 0
  [../]

  [./Seff1BWsmall_AuxK]
    type = RichardsSeffAux
    variable = Seff1BWsmall_Aux
    seff_UO = Seff1BWsmall
    pressure_vars = pressure
  [../]
  [./dSeff1BWsmall_AuxK]
    type = RichardsSeffPrimeAux
    variable = dSeff1BWsmall_Aux
    seff_UO = Seff1BWsmall
    pressure_vars = pressure
    wrtnum = 0
  [../]
  [./d2Seff1BWsmall_AuxK]
    type = RichardsSeffPrimePrimeAux
    variable = d2Seff1BWsmall_Aux
    seff_UO = Seff1BWsmall
    pressure_vars = pressure
    wrtnum1 = 0
    wrtnum2 = 0
  [../]

  [./Seff1RSC_AuxK]
    type = RichardsSeffAux
    variable = Seff1RSC_Aux
    seff_UO = Seff1RSC
    pressure_vars = pressure
  [../]
  [./dSeff1RSC_AuxK]
    type = RichardsSeffPrimeAux
    variable = dSeff1RSC_Aux
    seff_UO = Seff1RSC
    pressure_vars = pressure
    wrtnum = 0
  [../]
  [./d2Seff1RSC_AuxK]
    type = RichardsSeffPrimePrimeAux
    variable = d2Seff1RSC_Aux
    seff_UO = Seff1RSC
    pressure_vars = pressure
    wrtnum1 = 0
    wrtnum2 = 0
  [../]

  [./Seff1VGcut_AuxK]
    type = RichardsSeffAux
    variable = Seff1VGcut_Aux
    seff_UO = Seff1VGcut
    pressure_vars = pressure
  [../]
  [./dSeff1VGcut_AuxK]
    type = RichardsSeffPrimeAux
    variable = dSeff1VGcut_Aux
    seff_UO = Seff1VGcut
    pressure_vars = pressure
    wrtnum = 0
  [../]
  [./d2Seff1VGcut_AuxK]
    type = RichardsSeffPrimePrimeAux
    variable = d2Seff1VGcut_Aux
    seff_UO = Seff1VGcut
    pressure_vars = pressure
    wrtnum1 = 0
    wrtnum2 = 0
  [../]

  [./Sat_AuxK]
    type = RichardsSatAux
    sat_UO = Saturation
    seff_var = Seff1VG_Aux
    variable = Sat_Aux
  [../]
  [./dSat_AuxK]
    type = RichardsSatPrimeAux
    sat_UO = Saturation
    seff_var = Seff1VG_Aux
    variable = dSat_Aux
  [../]

  [./check_AuxK]
    type = FunctionAux
    variable = check_Aux
    function = answer_Seff1VGcut
  [../]
[]

[Postprocessors]
  [./cf_Seff1VG]
    type = NodalL2Error
    function = answer_Seff1VG
    variable = Seff1VG_Aux
  [../]
  [./cf_dSeff1VG]
    type = NodalL2Error
    function = answer_dSeff1VG
    variable = dSeff1VG_Aux
  [../]
  [./cf_d2Seff1VG]
    type = NodalL2Error
    function = answer_d2Seff1VG
    variable = d2Seff1VG_Aux
  [../]

  [./cf_Seff1BW]
    type = NodalL2Error
    function = answer_Seff1BW
    variable = Seff1BWsmall_Aux
  [../]
  [./cf_Seff1BWprime]
    type = NodalL2Error
    function = answer_Seff1BWprime
    variable = dSeff1BWsmall_Aux
  [../]
  [./cf_Seff1BW2prime]
    type = NodalL2Error
    function = answer_Seff1BW2prime
    variable = d2Seff1BWsmall_Aux
  [../]

  [./cf_Seff1RSC]
    type = NodalL2Error
    function = answer_Seff1RSC
    variable = Seff1RSC_Aux
  [../]
  [./cf_dSeff1RSC]
    type = NodalL2Error
    function = answer_dSeff1RSC
    variable = dSeff1RSC_Aux
  [../]
  [./cf_d2Seff1RSC]
    type = NodalL2Error
    function = answer_d2Seff1RSC
    variable = d2Seff1RSC_Aux
  [../]

  [./cf_Seff1VGcut]
    type = NodalL2Error
    function = answer_Seff1VGcut
    variable = Seff1VGcut_Aux
  [../]
  [./cf_dSeff1VGcut]
    type = NodalL2Error
    function = answer_dSeff1VGcut
    variable = dSeff1VGcut_Aux
  [../]
  [./cf_d2Seff1VGcut]
    type = NodalL2Error
    function = answer_d2Seff1VGcut
    variable = d2Seff1VGcut_Aux
  [../]

  [./cf_Sat]
    type = NodalL2Error
    function = answer_Sat
    variable = Sat_Aux
  [../]
  [./cf_dSat]
    type = NodalL2Error
    function = answer_dSat
    variable = dSat_Aux
  [../]
[]



#############################################################################
#
# Following is largely unimportant as we are not running an actual similation
#
#############################################################################
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = -5E6
  xmax = 5E6
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    richardsVarNames_UO = PPNames
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    richardsVarNames_UO = PPNames
    variable = pressure
  [../]
[]

[Materials]
  [./unimportant_material]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-20 0 0  0 1E-20 0  0 0 1E-20'
    richardsVarNames_UO = PPNames
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    viscosity = 1E-3
    gravity = '0 0 -10'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  [./does_nothing]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E50 1E50 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
  dt = 1E-100
[]

[Outputs]
  execute_on = 'timestep_end'
  active = 'csv'
  file_base = uo3
  [./csv]
    type = CSV
  [../]
  [./exodus]
    type = Exodus
    hide = pressure
  [../]
[]

modules/tensor_mechanics/test/tests/visco/burgers_creep.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    variable = stress_xx
    rank_two_tensor = stress
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./strain_xx]
    type = RankTwoAux
    variable = strain_xx
    rank_two_tensor = total_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    variable = creep_strain_xx
    rank_two_tensor = creep_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./axial_load]
    type = NeumannBC
    variable = disp_x
    boundary = right
    value    = 10e6
  [../]
[]

[Materials]
  [./burgers]
    type = GeneralizedKelvinVoigtModel
    creep_modulus = '10e9'
    creep_viscosity = '1 10'
    poisson_ratio = 0.2
    young_modulus = 10e9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'creep'
  [../]
  [./creep]
    type = LinearViscoelasticStressUpdate
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./update]
    type = LinearViscoelasticityManager
    viscoelastic_model = burgers
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./creep_strain_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  l_max_its  = 50
  l_tol      = 1e-10
  nl_max_its = 20
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dtmin = 0.01
  end_time = 100
  [./TimeStepper]
    type = LogConstantDT
    first_dt = 0.1
    log_dt = 0.1
  [../]

[]

[Outputs]
  file_base = burgers_creep_out
  exodus = true
[]

test/tests/postprocessors/nodal_var_value/screen_output_test.i

[Mesh]
  file = square-2x2-nodeids.e
  # This test can only be run with renumering disabled, so the
  # NodalVariableValue postprocessor's node id is well-defined.
  allow_renumbering = false
[]

[Variables]
  active = 'u v'

  [./u]
    order = SECOND
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Functions]
  active = 'force_fn exact_fn left_bc'

  [./force_fn]
    type = ParsedFunction
    value = '1-x*x+2*t'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = '(1-x*x)*t'
  [../]

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = '
    time_u diff_u ffn_u
    time_v diff_v'

  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'all_u left_v right_v'

  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = exact_fn
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '2'
    value = 0
  [../]
[]

[Postprocessors]
  active = 'l2 node1 node4'

  [./l2]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./node1]
    type = NodalVariableValue
    variable = u
    nodeid = 15
  [../]

  [./node4]
    type = NodalVariableValue
    variable = v
    nodeid = 10
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  [./console]
    type = Console
    max_rows = 2
  [../]
[]

modules/combined/test/tests/internal_volume/hex8_sm.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a space considering
#   an embedded volume inside.
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total volume
#   is 7.
#
# The internal volume is then adjusted by a piecewise linear time varying
# function.  Thus, the total volume is 7 plus the addition at the particular
# time.
#
#  Time |  Addition  | Total volume
#   0   |    0.0     |     7.0
#   1   |    3.0     |    10.0
#   2   |    7.0     |    14.0
#   3   |   -3.0     |     4.0
#

[Mesh]
  file = meshes/hex8.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./step]
    type = PiecewiseLinear
    x = '0. 1. 2. 3.'
    y = '0. 0. 1e-2 0.'
    scale_factor = 0.5
  [../]
  [./addition]
    type = PiecewiseLinear
    x = '0. 1. 2. 3.'
    y = '0. 3. 7. -3.'
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./prescribed_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 100
    function = step
  [../]
[]

[Materials]
  [./stiffStuff]
    type = LinearIsotropicMaterial
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    t_ref = 400.
  [../]

  [./stiffStuff2]
    type = LinearIsotropicMaterial
    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    t_ref = 400.
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  dt = 1.0
  end_time = 3.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 100
    addition = addition
    execute_on = 'initial timestep_end'
  [../]

  [./dispZ]
    type = ElementAverageValue
    block = '1 2'
    variable = disp_z
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/hyperelastic_viscoplastic/one_elem.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./peeq]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./peeq]
    type = MaterialRealAux
    variable = peeq
    property = ep_eqv
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = '0.01*t'
  [../]
[]

[UserObjects]
  [./flowstress]
    type = HEVPRambergOsgoodHardening
    yield_stress = 100
    hardening_exponent = 0.1
    reference_plastic_strain = 0.002
    intvar_prop_name = ep_eqv
  [../]
  [./flowrate]
    type = HEVPFlowRatePowerLawJ2
    reference_flow_rate = 0.0001
    flow_rate_exponent = 50.0
    flow_rate_tol = 1
    strength_prop_name = flowstress
  [../]
  [./ep_eqv]
     type = HEVPEqvPlasticStrain
     intvar_rate_prop_name = ep_eqv_rate
  [../]
  [./ep_eqv_rate]
     type = HEVPEqvPlasticStrainRate
     flow_rate_prop_name = flowrate
  [../]
[]

[Materials]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'ux uy uz'
  [../]
  [./viscop]
    type = FiniteStrainHyperElasticViscoPlastic
    block = 0
    resid_abs_tol = 1e-18
    resid_rel_tol = 1e-8
    maxiters = 50
    max_substep_iteration = 5
    flow_rate_user_objects = 'flowrate'
    strength_user_objects = 'flowstress'
    internal_var_user_objects = 'ep_eqv'
    internal_var_rate_user_objects = 'ep_eqv_rate'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '2.8e5 1.2e5 1.2e5 2.8e5 1.2e5 2.8e5 0.8e5 0.8e5 0.8e5'
    fill_method = symmetric9
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./peeq]
    type = ElementAverageValue
    variable = peeq
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.02
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  dtmax = 10.0
  nl_rel_tol = 1e-10
  dtmin = 0.02
  num_steps = 10
[]

[Outputs]
  file_base = one_elem
  exodus = true
  csv = false
[]

modules/combined/test/tests/internal_volume/rz_cone_sm.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a cone.
#
# The mesh is composed of one block (1).  The height is 3/pi, and the radius
#   is 1.  Thus, the volume is 1/3*pi*r^2*h = 1.
#

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = meshes/rz_cone.e
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e4
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./Pressure]
    [./fred]
      boundary = 1
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
    [../]
  [../]
[]

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 1
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/capped_drucker_prager/small_deform2_inner_edge.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1.5E-6*x+2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    mc_interpolation_scheme = inner_edge
    internal_constraint_tolerance = 1 # irrelevant here
    yield_function_tolerance = 1      # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    lambda = 0.0
    shear_modulus = 1.0e7
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = cdp
    perform_finite_strain_rotations = false
  [../]
  [./cdp]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-8
    tip_smoother = 4
    smoothing_tol = 1E-5
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_inner_edge
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/executioners/nl_divergence_tolerance/nl_divergence_tolerance.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
[]

[Variables]
  [./u]
    scaling = 1e-4
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    preset = false
    boundary = left
    value = -1000
  [../]
  [./right]
    type = DirichletBC
    variable = u
    preset = false
    boundary = right
    value = 100000
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'
  line_search = 'none'
  solve_type = PJFNK

  l_max_its = 20
  nl_max_its = 20
  nl_div_tol = 1.0e+4

  dt = 5
  num_steps = 4

  petsc_options = '-snes_converged_reason -ksp_converged_reason '
  petsc_options_iname = '-pc_type -pc_hypre_type '
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/internal_volume/rspherical_sm.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a space considering
#   an embedded volume inside.
#
# The mesh is composed of two blocks with an interior cavity of volume 3.
#   The volume of each of the blocks is also 3.  The volume of the entire sphere
#   is 9.
#

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]
  file = meshes/rspherical.e
  construct_side_list_from_node_list = true
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e4
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2 3 4'
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_r = disp_x

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff3]
    type = Elastic
    block = 3

    disp_r = disp_x

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 10
    component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./intVol1]
    type = InternalVolume
    boundary = 2
    component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./intVol1Again]
    type = InternalVolume
    boundary = 9
    component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./intVol2]
    type = InternalVolume
    boundary = 11
    component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./intVolTotal]
    type = InternalVolume
    boundary = 4
    component = 0
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform_hard3.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out
#
# friction_angle = 50deg, friction_angle_residual=51deg, friction_angle_rate = 1E7 (huge)
# cohesion = 10, cohesion_residual = 9.9, cohesion_rate = 1E7 (huge)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.25E-6*y*sin(t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 10
    value_residual = 9.9
    rate = 1E7
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.8726646 # 50deg
    value_residual = 0.8901179 # 51deg
    rate = 1E7
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0
    value_residual = 0.8726646 # 50deg
    rate = 3000
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4
    mc_edge_smoother = 20
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '10 1 2 1 11 -3 2 -3 8'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 30
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/radial_disp_aux/sphere_2d_axisymmetric.i

# The purpose of this set of tests is to check the values computed
# by the RadialDisplacementAux AuxKernel. They should match the
# radial component of the displacment for a cylindrical or spherical
# model.
# This particular model is of a sphere subjected to uniform thermal
# expansion represented using a 2D axisymmetric model.

[Mesh]
  type = FileMesh
  file = circle_sector_2d.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  order = SECOND
  family = LAGRANGE
[]

[Problem]
  coord_type = RZ
[]

[AuxVariables]
  [./temp]
  [../]
  [./rad_disp]
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t+300.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    eigenstrain_names = eigenstrain
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
    use_displaced_mesh = false
  [../]
  [./raddispaux]
    type = RadialDisplacementSphereAux
    variable = rad_disp
    origin = '0 0 0'
  [../]
[]

[BCs]
  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 300
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '51'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  end_time = 1
  dt = 1
  dtmin = 1
[]

[Outputs]
 csv = true
 exodus = true
[]

#[Postprocessors]
#  [./strain_xx]
#    type = SideAverageValue
#    variable =
#    block = 0
#  [../]
#[]

test/tests/time_integrators/explicit-euler/ee-1d-quadratic-neumann.i

[GlobalParams]
  implicit = false
[]

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -1
  xmax = 1
  nx = 10
  elem_type = EDGE3
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = x*x-2*t+t*x*x
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*x*x
  [../]

  [./left_bc_fn]
    type = ParsedFunction
    value = -t*2*x
  [../]
  [./right_bc_fn]
    type = ParsedFunction
    value = t*2*x
  [../]
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
    implicit = true
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./abs]
    type = Reaction
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./left]
    type = FunctionNeumannBC
    variable = u
    boundary = '0'
    function = left_bc_fn
  [../]

  [./right]
    type = FunctionNeumannBC
    variable = u
    boundary = '1'
    function = right_bc_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'explicit-euler'
  solve_type = 'LINEAR'

  l_tol = 1e-12
  start_time = 0.0
  num_steps = 10
  dt = 0.001
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/tensor_mechanics/test/tests/crystal_plasticity/rot-eg1.i

#
# Rotation Test
#
# This test is designed to compute a uniaxial stress and then follow that
# stress as the mesh is rotated 90 degrees.
#
# The mesh is composed of one block with a single element.  The nodal
# displacements in the x and y directions are prescribed.  Poisson's
# ratio is zero.
#

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 3
    elem_type = HEX8
    displacements = 'ux uy uz'
  []
  [./side1n1]
    input = gen
    type = ExtraNodesetGenerator
    coord = '0.0 0.0 0.0'
    boundary = 6
  [../]
  [./side1n2]
    input = side1n1
    type = ExtraNodesetGenerator
    coord = '1.0 0.0 0.0'
    boundary = 7
  [../]
  [./side2n1]
    input = side1n2
    type = ExtraNodesetGenerator
    coord = '0.0 1.0 0.0'
    boundary = 8
  [../]
  [./side2n2]
    input = side2n1
    type = ExtraNodesetGenerator
    coord = '1.0 1.0 0.0'
    boundary = 9
  [../]
  [./side3n1]
    input = side2n2
    type = ExtraNodesetGenerator
    coord = '0.0 1.0 1.0'
    boundary = 10
  [../]
  [./side3n2]
    input = side3n1
    type = ExtraNodesetGenerator
    coord = '1.0 1.0 1.0'
    boundary = 11
  [../]
  [./side4n1]
    input = side3n2
    type = ExtraNodesetGenerator
    coord = '0.0 0.0 1.0'
    boundary = 12
  [../]
  [./side4n2]
    input = side4n1
    type = ExtraNodesetGenerator
    coord = '1.0 0.0 1.0'
    boundary = 13
  [../]
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[Functions]
  [./side2uxfunc]
    type = ParsedFunction
    value = cos(pi/2*t)-1
  [../]
  [./side2uyfunc]
    type = ParsedFunction
    value = sin(pi/2*t)
  [../]
  [./side3uxfunc]
    type = ParsedFunction
    value = cos(pi/2*t)-sin(pi/2*t)-1
  [../]
  [./side3uyfunc]
    type = ParsedFunction
    value = cos(pi/2*t)+sin(pi/2*t)-1
  [../]
  [./side4uxfunc]
    type = ParsedFunction
    value = -sin(pi/2*t)
  [../]
  [./side4uyfunc]
    type = ParsedFunction
    value = cos(pi/2*t)-1
  [../]
[]

[BCs]
  active = 'bcside1 bcside2ux bcside2uy bcside4ux bcside4uy bcside3uy bcside3ux bcx'
  [./bcside1]
    type = DirichletBC
    variable = 'uy uz'
    boundary = '6 7'
    value = 0
  [../]
  [./bcside2ux]
    type = FunctionDirichletBC
    variable = uy
    boundary = '8 9'
    function = side2uxfunc
  [../]
  [./bcside2uy]
    type = FunctionDirichletBC
    variable = uz
    boundary = '8 9'
    function = side2uyfunc
  [../]
  [./bcside3ux]
    type = FunctionDirichletBC
    variable = uy
    boundary = '10 11'
    function = side3uxfunc
  [../]
  [./bcside3uy]
    type = FunctionDirichletBC
    variable = uz
    boundary = '10 11'
    function = side3uyfunc
  [../]
  [./bcside4ux]
    type = FunctionDirichletBC
    variable = uy
    boundary = '12 13'
    function = side4uxfunc
  [../]
  [./bcside4uy]
    type = FunctionDirichletBC
    variable = uz
    boundary = '12 13'
    function = side4uyfunc
  [../]
  [./bot]
    type = DirichletBC
    variable = 'ux uy uz'
    boundary = back
    value = 0
  [../]
  [./topxz]
    type = DirichletBC
    variable = 'ux uz'
    boundary = front
    value = 0
  [../]
  [./topy]
    type = DirichletBC
    variable = uy
    boundary = front
    value = 1
  [../]
  [./bcx]
    type = DirichletBC
    variable = ux
    boundary = '6 7 8 9 10 11 12 13'
    value = 0
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCrystalPlasticity
    block = 0
    disp_y = uy
    disp_x = ux
    slip_sys_file_name = input_slip_sys.txt
    disp_z = uz
    flowprops = ' 1 12 0.001 0.1'
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 .754e5 .754e5 .754e5'
    nss = 12
    hprops = '1 541.5 60.8 109.8'
    gprops = '1 12 60.8'
    fill_method = symmetric9
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.01

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  dtmax = 0.01
  end_time = 1
  dtmin = 0.01
[]

[Outputs]
  file_base = rot_eg1
  solution_history = true
  [./exodus]
    type = Exodus
    use_displaced = true
  [../]
[]

[TensorMechanics]
  [./tensormech]
    disp_z = uz
    disp_y = uy
    disp_x = ux
  [../]
[]

test/tests/multiapps/move_and_reset/multilevel_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '1 1 0'
    input_files = multilevel_sub_sub.i
    output_in_position = true
  [../]
[]

modules/combined/test/tests/feature_volume_fraction/feature_volume_fraction.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  nz = 0

  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 20
      y1 = 20
      radius = 10
      int_width = 1
      invalue = 1
      outvalue = 0
    [../]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[VectorPostprocessors]
  [./feature_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = feature_counter
    execute_on = 'initial timestep_end'
    outputs = none
  [../]
[]

[Postprocessors]
  [./feature_counter]
    type = FeatureFloodCount
    variable = u
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_end'
  [../]
  [./Volume]
    type = VolumePostprocessor
    execute_on = 'initial'
  [../]
  [./volume_fraction]
    type = FeatureVolumeFraction
    mesh_volume = Volume
    feature_volumes = feature_volumes
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  num_steps = 2
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian/cdpc02.i

#Cosserat capped weak plane and capped drucker prager
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 4
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 0.4
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    yield_function_tolerance = 1E-11     # irrelevant here
    internal_constraint_tolerance = 1E-9 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 10.0
    poisson = 0.25
    layer_thickness = 10.0
    joint_normal_stiffness = 2.5
    joint_shear_stiffness = 2.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '5 1 2  1 4 3  2.1 3.1 1'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = 'dp'
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
  [../]
  [./dp]
    type = CappedDruckerPragerCosseratStressUpdate
    host_youngs_modulus = 10.0
    host_poissons_ratio = 0.25
    base_name = dp
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-11
    tip_smoother = 1
    smoothing_tol = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  end_time = 1
  dt = 1
  type = Transient
[]

modules/phase_field/test/tests/Nucleation/timestep.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  nz = 0
  xmin = 0
  xmax = 20
  ymin = 0
  ymax = 20
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    variable = c
    value = 0
  [../]
  [./right]
    type = DirichletBC
    boundary = right
    variable = c
    value = 1
  [../]
  [./Periodic]
    [./all]
      auto_direction = y
    [../]
  [../]
[]

[Kernels]
  [./c]
    type = Diffusion
    variable = c
  [../]
  [./dt]
    type = TimeDerivative
    variable = c
  [../]
[]

[UserObjects]
  [./inserter]
    type = DiscreteNucleationInserter
    hold_time = 1
    probability = 0.0005
  [../]
  [./map]
    type = DiscreteNucleationMap
    radius = 3.27
    periodic = c
    inserter = inserter
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
  [./dtnuc]
    type = DiscreteNucleationTimeStep
    inserter = inserter
    p2nucleus = 0.1
    dt_max = 0.5
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 20

  [./TimeStepper]
    type = IterationAdaptiveDT
    optimal_iterations = 8
    iteration_window = 2
    timestep_limiting_postprocessor = dtnuc
    dt = 1
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  csv = true
[]

test/tests/time_steppers/iteration_adaptive/adapt_tstep_reject_large_dt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmax = 5
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./timestep_fn]
    type = PiecewiseConstant
    x = '0.   10.0'
    y = '10.0 1.0'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 10
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = -1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  start_time = 0.0
  end_time = 12.0
  dtmax = 10.0
  dtmin = 0.1
  [./TimeStepper]
    type = IterationAdaptiveDT
    timestep_limiting_postprocessor = timestep_pp
    reject_large_step = true
    reject_large_step_threshold = 0.5
    dt = 3.0
    growth_factor = 1.0
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]

# Just use a simple postprocessor to test capability to limit the time step length to the postprocessor value
  [./timestep_pp]
    type = FunctionValuePostprocessor
    function = timestep_fn
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  checkpoint = true
[]

modules/combined/test/tests/j2_plasticity_vs_LSH/j2_hard1_mod.i

# Test designed to compare results and active time between SH/LinearStrainHardening
# material vs TM j2 plastic user object. As number of elements increases, TM
# active time increases at a much higher rate than SM. Testing at 4x4x4
# (64 elements).
#
# plot vm_stress vs intnl to see constant hardening
#
# Original test located at:
# tensor_mechanics/tests/j2_plasticity/hard1.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 4
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vm_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eq_pl_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./intnl]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = intnl
  [../]
  [./eq_pl_strain]
    type = RankTwoScalarAux
    rank_two_tensor = plastic_strain
    scalar_type = EffectiveStrain
    variable = eq_pl_strain
  [../]
  [./vm_stress]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = VonMisesStress
    variable = vm_stress
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 't/60'
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 2.4e2
  [../]
  [./j2]
    type = TensorMechanicsPlasticJ2
    yield_strength = str
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    #with E = 2.1e5 and nu = 0.3
    #Hooke's law: E-nu to Lambda-G
    C_ijkl = '121154 80769.2'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = j2
    tangent_operator = elastic
  [../]
[]


[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-10
  l_tol = 1e-4
  start_time = 0.0
  end_time = 0.5
  dt = 0.01
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./intnl]
    type = ElementAverageValue
    variable = intnl
  [../]
  [./eq_pl_strain]
    type = PointValue
    point = '0 0 0'
    variable = eq_pl_strain
  [../]
  [./vm_stress]
    type = PointValue
    point = '0 0 0'
    variable = vm_stress
  [../]
[]

[Outputs]
  csv = true
  print_linear_residuals = false
  perf_graph = true
[]

test/tests/multiapps/output_in_position/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '1 1 0'
    input_files = sub.i
    output_in_position = true
  [../]
[]

modules/solid_mechanics/test/tests/j_integral/j_integral_3d_as_2d_topo_q_func.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with one element
#through the thickness, and calculates the J-Integrals using options
#to treat it as 2d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = crack_3d_as_2d.e
  displacements = 'disp_x disp_y disp_z'
  partitioner = centroid
  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  q_function_type = Topology
  ring_first = 1
  ring_last = 3
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = j_integral_3d_as_2d_topo_q_func_out
  exodus = true
  csv = true
[]

test/tests/outputs/output_if_base_contains/dt_from_master_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.25

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0 0.5 0.5 0'
    input_files = dt_from_master_sub.i
  [../]
[]

tutorials/darcy_thermo_mech/step05_heat_conduction/tests/bcs/outflow/outflow.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 5
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
[]

[Variables]
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[Kernels]
  [heat_conduction]
    type = HeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = SpecificHeatConductionTimeDerivative
    variable = temperature
  []
[]

[BCs]
  [inlet_temperature]
    type = DirichletBC
    variable = temperature
    boundary = left
    value = 350 # (K)
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = right
  []
[]

[Materials]
  [steel]
    type = GenericConstantMaterial
    prop_names = 'thermal_conductivity specific_heat density'
    prop_values = '18 466 8000' # W/m*K, J/kg-K, kg/m^3 @ 296K
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  num_steps = 2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/peridynamics/test/tests/plane_stress/conventional_planestress_NOSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 10
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1003
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1001
    value = 0.001
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputePlaneStressIsotropicElasticityTensor
    youngs_modulus = 2.1e8
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeSmallStrainNOSPD
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  end_time = 1
  nl_rel_tol = 1e-10

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

[Outputs]
  file_base = conventional_planestress_NOSPD
  exodus = true
[]

modules/combined/test/tests/simplest_contact/simplest_contact_skew_test.i

[Mesh]
  file = simplest_contact_skew.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  []
[]

[AuxKernels]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 2
    paired_boundary = 3
  [../]
[]

[Constraints]
  [./contact_x]
    type = MultiDContactConstraint
    variable = disp_x
    master_variable = disp_x
    component = 0
    slave = 2
    master = 3
    penalty = 1e6
  [../]

  [./contact_y]
    type = MultiDContactConstraint
    variable = disp_y
    master_variable = disp_y
    component = 1
    slave = 2
    master = 3
    penalty = 1e6
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  #petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  #petsc_options_value = 'hypre    boomeramg      101'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'

  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/heat_conduction/test/tests/verify_against_analytical/1D_transient.i

# This test solves a 1D transient heat equation
# The error is caclulated by comparing to the analytical solution
# The problem setup and analytical solution are taken from "Advanced Engineering
# Mathematics, 10th edition" by Erwin Kreyszig.
# http://www.amazon.com/Advanced-Engineering-Mathematics-Erwin-Kreyszig/dp/0470458364
# It is Example 1 in section 12.6 on page 561

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 160
  xmax = 80
[]

[Variables]
  [./T]
  [../]
[]

[ICs]
  [./T_IC]
    type = FunctionIC
    variable = T
    function = '100*sin(pi*x/80)'
  [../]
[]

[Kernels]
  [./HeatDiff]
    type = HeatConduction
    variable = T
  [../]
  [./HeatTdot]
    type = HeatConductionTimeDerivative
    variable = T
  [../]
[]

[BCs]
  [./sides]
    type = DirichletBC
    variable = T
    boundary = 'left right'
    value = 0
  [../]
[]

[Materials]
  [./k]
    type = GenericConstantMaterial
    prop_names = 'thermal_conductivity'
    prop_values = '0.95' #copper in cal/(cm sec C)
  [../]
  [./cp]
    type = GenericConstantMaterial
    prop_names = 'specific_heat'
    prop_values = '0.092' #copper in cal/(g C)
  [../]
  [./rho]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '8.92' #copper in g/(cm^3)
  [../]
[]

[Postprocessors]
  [./error]
    type = NodalL2Error
    function = '100*sin(pi*x/80)*exp(-0.95/(0.092*8.92)*pi^2/80^2*t)'
    variable = T
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  l_tol = 1e-6
  dt = 2
  end_time = 100
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_elastic/finite_elastic.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_x]
    scaling = 1e-10
  [../]
  [./disp_y]
    scaling = 1e-10
  [../]
  [./disp_z]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_x]
    type = ADStressDivergenceTensors
    component = 0
    variable = disp_x
    use_displaced_mesh = true
  [../]
  [./stress_y]
    type = ADStressDivergenceTensors
    component = 1
    variable = disp_y
    use_displaced_mesh = true
  [../]
  [./stress_z]
    type = ADStressDivergenceTensors
    component = 2
    variable = disp_z
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeFiniteStrain
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

test/tests/bcs/periodic/trapezoid_non_periodic.i

[Mesh]
  file = trapezoid.e
  uniform_refine = 1
[]

[Variables]
  [u]
    order = FIRST
    family = LAGRANGE
  []
[]

[AuxVariables]
  [periodic_dist]
    order = FIRST
    family = LAGRANGE
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []

  [forcing]
    type = GaussContForcing
    variable = u
    x_center = 2
    y_center = -1
    x_spread = 0.25
    y_spread = 0.5
  []

  [dot]
    type = TimeDerivative
    variable = u
  []
[]

[AuxKernels]
  [periodic_dist]
    type = PeriodicDistanceAux
    variable = periodic_dist
    point = '0.2 1.7 0.0'
  []
[]

[BCs]
  [right]
    type = DirichletBC
    variable = u
    value = 1
    boundary = 2
  []
  [left]
    type = DirichletBC
    variable = u
    value = 2
    boundary = 2
  []
[]

[Executioner]
  type = Transient
  dt = 0.5
  num_steps = 6
  solve_type = NEWTON
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/j2_plasticity/hard2.i

# UserObject J2 test, with hardening, but with rate=1E6
# apply uniform compression in x direction to give
# trial stress_xx = 5, so sqrt(3*J2) = 5
# with zero Poisson's ratio, lambda_mu = 1E6, and strength=2, strength_residual=1,
# the equations that we need to solve are:
#
# stress_yy = stress_zz  [because of the symmetry of the problem: to keep Lode angle constant]
# stress_xx - stress_yy = 1 + (2 - 1)*exp(-0.5*(1E6*q)^2)   [yield_fcn = 0]
# stress_xx + stress_yy + stress_zz = 5   [mean stress constant]
# q = gamma
# stress_xx = 1E6*2*gamma*(stress_xx - 5/3)*sqrt(3)/2/sqrt(J2), where sqrt(J2) = (1 + (2 - 1)*exp(-0.5*(1E6*q)^2))/Sqrt(3)
# so RHS = 1E6*2*gamma*(stress_xx - 5/3)*3/2/(stress_xx - stress_yy)
#
# stress_xx = 2.672
# stress_yy = 1.164
# q = 1.164E-6

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '2.5E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningGaussian
    value_0 = 2
    value_residual = 1
    rate = 1E12
  [../]
  [./j2]
    type = TensorMechanicsPlasticJ2
    yield_strength = str
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = j2
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = hard2
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/capped_drucker_prager/small_deform3_native.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-1.35E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E5
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E5
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    mc_interpolation_scheme = native
    yield_function_tolerance = 1      # irrelevant here
    internal_constraint_tolerance = 1 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-8
    tip_smoother = 8
    smoothing_tol = 1E-7
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3_native
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_4/plane4_template2_sm.i

[Mesh]
  file = plane4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 200
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/phase_field/test/tests/MultiPhase/crosstermbarrierfunction.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 200
  xmin = 0
  xmax = 9
[]

[Functions]
  [./func1]
    type = ParsedFunction
    value = 'il:=x-7; ir:=2-x; if(x<1, 1,
                               if(x<2, 0.5-0.5*cos(ir*pi),
                               if(x<7, 0,
                               if(x<8, 0.5-0.5*cos(il*pi),
                               1))))'
  [../]
  [./func2]
    type = ParsedFunction
    value = 'il:=x-1; ir:=5-x; if(x<1, 0,
                               if(x<2, 0.5-0.5*cos(il*pi),
                               if(x<4, 1,
                               if(x<5, 0.5-0.5*cos(ir*pi),
                               0))))'
  [../]
  [./func3]
    type = ParsedFunction
    value = 'il:=x-4; ir:=8-x; if(x<4, 0,
                               if(x<5, 0.5-0.5*cos(il*pi),
                               if(x<7, 1,
                               if(x<8, 0.5-0.5*cos(ir*pi),
                               0))))'
  [../]
[]

[AuxVariables]
  [./eta1]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = func1
    [../]
  [../]
  [./eta2]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = func2
    [../]
  [../]
  [./eta3]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = func3
    [../]
  [../]
[]

[Materials]
  [./crosstermbarrier_simple]
    type = CrossTermBarrierFunctionMaterial
    etas = 'eta1 eta2 eta3'
    W_ij = '0   1   2.2
            1   0   3.1
            2.2 3.1 0'
    function_name = gsimple
    g_order = SIMPLE
    outputs = exodus
  [../]
  [./crosstermbarrier_low]
    type = CrossTermBarrierFunctionMaterial
    etas = 'eta1 eta2 eta3'
    W_ij = '0   1   2.2
            1   0   3.1
            2.2 3.1 0'
    function_name = glow
    g_order = LOW
    outputs = exodus
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 1
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  exodus = true
  execute_on = final
[]

modules/tensor_mechanics/test/tests/ad_elastic/rspherical_incremental_small_elastic.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 5
[]

[Problem]
  coord_type = RSPHERICAL
[]

[GlobalParams]
  displacements = 'disp_r'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = ADStressDivergenceRSphericalTensors
    component = 0
    variable = disp_r
  [../]
[]

[BCs]
  [./center]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeRSphericalIncrementalStrain
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/poro_mechanics/selected_qp.i

# A sample is unconstrained and its boundaries are
# also impermeable.  Fluid is pumped into the sample via specifying
# the porepressure at all points, and the
# mean stress is monitored at quadpoints in the sample
# This is just to check that the selected_qp in RankTwoScalarAux is working

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./pbdy]
    type = FunctionDirichletBC
    variable = porepressure
    function = 'x*t'
    boundary = 'left right'
  [../]

[]


[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PoroMechanicsCoupling
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PoroMechanicsCoupling
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PoroMechanicsCoupling
    variable = disp_z
    component = 2
  [../]
  [./poro_timederiv]
    type = PoroFullSatTimeDerivative
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./mean_stress0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mean_stress1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mean_stress2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mean_stress3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mean_stress4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mean_stress5]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mean_stress6]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mean_stress7]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mean_stress0]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = mean_stress0
    scalar_type = Hydrostatic
    selected_qp = 0
  [../]
  [./mean_stress1]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = mean_stress1
    scalar_type = Hydrostatic
    selected_qp = 1
  [../]
  [./mean_stress2]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = mean_stress2
    scalar_type = Hydrostatic
    selected_qp = 2
  [../]
  [./mean_stress3]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = mean_stress3
    scalar_type = Hydrostatic
    selected_qp = 3
  [../]
  [./mean_stress4]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = mean_stress4
    scalar_type = Hydrostatic
    selected_qp = 4
  [../]
  [./mean_stress5]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = mean_stress5
    scalar_type = Hydrostatic
    selected_qp = 5
  [../]
  [./mean_stress6]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = mean_stress6
    scalar_type = Hydrostatic
    selected_qp = 6
  [../]
  [./mean_stress7]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = mean_stress7
    scalar_type = Hydrostatic
    selected_qp = 7
  [../]
[]



[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.0 1.0'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./poro_material]
    type = PoroFullSatMaterial
    porosity0 = 0.1
    biot_coefficient = 1.0
    solid_bulk_compliance = 0.5
    fluid_bulk_compliance = 0.3
    constant_porosity = false
  [../]
[]

[Postprocessors]
  [./mean0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = mean_stress0
  [../]
  [./mean1]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = mean_stress1
  [../]
  [./mean2]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = mean_stress2
  [../]
  [./mean3]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = mean_stress3
  [../]
  [./mean4]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = mean_stress4
  [../]
  [./mean5]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = mean_stress5
  [../]
  [./mean6]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = mean_stress6
  [../]
  [./mean7]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = mean_stress7
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres asm lu NONZERO 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 1
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = false
  file_base = selected_qp
  [./csv]
    type = CSV
  [../]
[]

modules/solid_mechanics/test/tests/j_integral/j_integral_3d_mouth_dir_end_dir_vec.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#Crack direction is defined using the crack mouth coordinates.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = crack3d.e
  displacements = 'disp_x disp_y disp_z'
#  partitioner = centroid
#  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackMouth
  crack_mouth_boundary = 900
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '1.0 0.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  output_variable = 'disp_x'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

#  [./pin_x]
#    type = DirichletBC
#    variable = disp_x
#    boundary = 200
#    value = 0.0
#  [../]
#
#  [./pin_y]
#    type = DirichletBC
#    variable = disp_y
#    boundary = 200
#    value = 0.0
#  [../]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

 # [./nocrack_y]
 #   type = DirichletBC
 #   variable = disp_y
 #   boundary = 600
 #   value = 0.0
 # [../]

# [./no_x]
#   type = DirichletBC
#   variable = disp_x
#   boundary = 500
#   value = 0.0
# [../]
# [./no_y]
#   type = DirichletBC
#   variable = disp_y
#   boundary = 500
#   value = 0.0
# [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Postprocessors]
  [./disp_x_centercrack]
    type = CrackFrontData
    crack_front_definition = crackFrontDefinition
    variable = disp_x
    crack_front_point_index = 1
  [../]
[]

[Outputs]
  file_base = j_integral_3d_mouth_dir_end_dir_vec_out
  exodus = true
  csv = true
[]

test/tests/adaptivity/initial_adapt/initial_adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 1

  solve_type = 'PJFNK'

[]

[Adaptivity]
  steps = 1
  marker = box
  max_h_level = 2
  initial_steps = 2
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = do_nothing
      type = BoxMarker
    [../]
  [../]
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/buckley_leverett/bl01_lumped_fu.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 150
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2.0E6
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-4
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]

[AuxKernels]
  active = 'calculate_seff'
  [./calculate_seff]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[BCs]
  active = 'left'
  [./left]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 980000
  [../]
[]

[Kernels]
  active = 'richardsf richardst'

  [./richardst]
    type = RichardsLumpedMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]


[Functions]
 active = 'initial_pressure'
  [./initial_pressure]
    type = ParsedFunction
    value = max((1000000-x/5*1000000)-20000,-20000)
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 20'
  [../]

[]

[Executioner]
  type = Transient
  end_time = 50
  dt = 2
[]

[Outputs]
  file_base = bl01_lumped_fu
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

modules/xfem/test/tests/second_order_elements/diffusion_3d_tet10.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 5
  nz = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.2
  elem_type = TET10
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./square_planar_cut_uo]
    type = RectangleCutUserObject
    cut_data = '  0.35 1.01 -0.001
                  0.35 0.49 -0.001
                  0.35 0.49  0.201
                  0.35 1.01  0.201'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = FunctionDirichletBC
    variable = u
    boundary = left
    function = u_left
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/xfem/test/tests/moment_fitting/solid_mechanics_moment_fitting.i

# Test for a mechanics problem which uses four points moment_fitting approach.
# See this paper (https://doi.org/10.1007/s00466-018-1544-2) for more details about moment_fitting approach.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = moment_fitting
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[UserObjects]
  [./line_seg_cut_uo0]
    type = LineSegmentCutUserObject
    cut_data = '0.0000e+00   6.3330e-01   3.9000e-01   6.3330e-01'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./line_seg_cut_uo1]
    type = LineSegmentCutUserObject
    cut_data = '3.9000e-01   6.3330e-01   6.8000e-01   6.3330e-01'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
  [../]
[]

[Functions]
  [./right_trac_x]
    type = ParsedFunction
    value = '-(t*M*y)/I'
    vars = 'M E I'
    vals = '2e4 1e6 0.666666667'
  [../]
  [./bottom_disp_y]
    type = ParsedFunction
    value = '((t*M)/(2*E*I))*(1-nu*nu)*(x*x-0.25*l*l)'
    vars = 'M E I l nu'
    vals = '2e4 1e6 0.666666667 2.0 0.3'
  [../]
  [./soln_x]
    type = ParsedFunction
    value = '-(M/(E*I))*(1-nu*nu)*x*y'
    vars = 'M E I nu'
    vals = '2e4 1e6 0.666666667 0.3'
  [../]
  [./soln_y]
    type = ParsedFunction
    value = '(M/(2*E*I))*(1-nu*nu)*(x*x-0.25*l*l+(nu/(1-nu))*y*y)'
    vars = 'M E I l nu'
    vals = '2e4 1e6 0.666666667 2.0 0.3'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionNeumannBC
    boundary = 1
    variable = disp_x
    function = right_trac_x
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    boundary = 0
    variable = disp_y
    function = bottom_disp_y
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

#  [./Quadrature]
#    order = FOURTH
#    type = MONOMIAL
#  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 0.5
  end_time = 1.0
  num_steps = 5000
[]

[Postprocessors]
  [./numel]
    type = NumElems
    execute_on = timestep_end
  [../]
  [./integral]
    type = ElementVectorL2Error
    var_x = disp_x
    var_y = disp_y
    function_x = soln_x
    function_y = soln_y
    execute_on = timestep_end
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/tensor_mechanics/test/tests/generalized_plane_strain/plane_strain_prescribed.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  scalar_out_of_plane_strain = scalar_strain_zz
  block = 1
[]

[Mesh]
  file = square.e
[]

[AuxVariables]
  [./temp]
  [../]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
[]

[AuxScalarKernels]
  [./strain_zz]
    type = FunctionScalarAux
    variable = scalar_strain_zz
    function = scalar_strain_zz_func
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
  [./scalar_strain_zz_func]
    type = PiecewiseLinear
    xy_data = '0 0
               1 7.901e-5
               2 1.103021e-2'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    temperature = temp
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy strain_zz'
    planar_formulation = PLANE_STRAIN
    eigenstrain_names = eigenstrain
    save_in = 'saved_x saved_y'
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/phase_field_kernels/ADAllenCahnVariableL.i

#
# Test the forward automatic differentiation Allen-Cahn Bulk kernel with a
# spatially varying mobility
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 12
  ymax = 12
  elem_type = QUAD4
[]

[AuxVariables]
  [./chi]
    [./InitialCondition]
      type = FunctionIC
      function = 'x/24+0.5'
    [../]
  [../]
[]

[Variables]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0.0
      y1 = 0.0
      radius = 6.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 3.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = ADTimeDerivative
    variable = eta
  [../]

  [./ACBulk]
    type = ADAllenCahn
    variable = eta
    f_name = F
  [../]

  [./ACInterface]
    type = ADACInterface
    variable = eta
    kappa_name = 1
    variable_L = true
    args = chi
  [../]
[]

[Materials]
  [./L]
    type = ADTestDerivativeFunction
    function = F2
    f_name = L
    op = 'eta chi'
  [../]

  [./free_energy]
    type = ADTestDerivativeFunction
    function = F1
    f_name = F
    op = 'eta'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'
  num_steps = 2
  dt = 1
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/initial_conditions/IsolatedBoundingBoxIC_2D_Overlapping.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  xmin = 0
  xmax = 400
  ny = 10
  ymin = 0
  ymax = 100
[]

[Problem]
  solve = false
[]

[Variables]
  [./c]
  [../]
[]

[ICs]
  [./c]
    type = IsolatedBoundingBoxIC
    variable = c
    smaller_coordinate_corners = '100 20 0 130 25 0 350 40 0'
    larger_coordinate_corners = '150 30 0 300 80 0 360 80 0'
    inside = '0.2 0.5 0.8'
    outside = 1
    int_width = 5
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       ilu            nonzero'
  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-11

  num_steps = 1
  dt = 1e-5
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialPFM.i

# this input file test the implementation of the grand-potential phase-field model based on M.Plapp PRE 84,031601(2011)
# in this simple example, the liquid and solid free energies are parabola with the same curvature and the material properties are constant
# Note that this example also test The SusceptibilityTimeDerivative kernels
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 16
  ny = 16
  xmax = 32
  ymax = 32
[]

[GlobalParams]
  radius = 20.0
  int_width = 4.0
  x1 = 0
  y1 = 0
[]

[Variables]
  [./w]
  [../]
  [./eta]
  [../]
[]

[ICs]
  [./w]
    type = SmoothCircleIC
    variable = w
    # note w = A*(c-cleq), A = 1.0, cleq = 0.0 ,i.e., w = c (in the matrix/liquid phase)
    outvalue = -0.2
    invalue = 0.2
  [../]
  [./eta]
    type = SmoothCircleIC
    variable = eta
    outvalue = 0.0
    invalue = 1.0
  [../]
[]

[Kernels]
  [./w_dot]
    type = SusceptibilityTimeDerivative
    variable = w
    f_name = chi
    args = '' # in this case chi (the susceptibility) is simply a constant
  [../]
  [./Diffusion]
    type = MatDiffusion
    variable = w
    diffusivity = D
    args = ''
  [../]
  [./coupled_etadot]
    type = CoupledSusceptibilityTimeDerivative
    variable = w
    v = eta
    f_name = ft
    args = 'eta'
  [../]
  [./AC_bulk]
    type = AllenCahn
    variable = eta
    f_name = F
    args = 'w'
  [../]
  [./AC_int]
    type = ACInterface
    variable = eta
  [../]
  [./e_dot]
    type = TimeDerivative
    variable = eta
  [../]
[]

[Materials]
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'kappa_op  D    L    chi  cs   cl   A'
    prop_values = '4.0       1.0  1.0  1.0  0.0  1.0  1.0'
  [../]

  [./liquid_GrandPotential]
    type = DerivativeParsedMaterial
    function = '-0.5 * w^2/A - cl * w'
    args = 'w'
    f_name = f1
    material_property_names = 'cl A'
  [../]
  [./solid_GrandPotential]
    type = DerivativeParsedMaterial
    function = '-0.5 * w^2/A - cs * w'
    args = 'w'
    f_name = f2
    material_property_names = 'cs A'
  [../]
  [./switching_function]
    type = SwitchingFunctionMaterial
    eta = eta
    h_order = HIGH
  [../]
  [./barrier_function]
    type = BarrierFunctionMaterial
    eta = eta
  [../]
  [./total_GrandPotential]
    type = DerivativeTwoPhaseMaterial
    args = 'w'
    eta = eta
    fa_name = f1
    fb_name = f2
    derivative_order = 2
    W = 1.0
  [../]
  [./coupled_eta_function]
    type = DerivativeParsedMaterial
    function = '(cs - cl) * dh'
    args = 'eta'
    f_name = ft
    material_property_names = 'cs cl dh:=D[h,eta]'
    derivative_order = 1
    outputs = exodus
  [../]

  [./concentration]
    type = ParsedMaterial
    f_name = c
    material_property_names = 'dF:=D[F,w]'
    function = '-dF'
    outputs = exodus
  [../]
[]

[Postprocessors]
  [./C]
    type = ElementIntegralMaterialProperty
    mat_prop = c
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON

  l_max_its = 15
  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8

  num_steps = 5
  dt = 10.0
[]

[Outputs]
  exodus = true
  csv = true
  execute_on = 'TIMESTEP_END'
[]

test/tests/bcs/periodic/trapezoid.i

[Mesh]
  file = trapezoid.e
  uniform_refine = 1
[]

[Functions]
  [./tr_x]
    type = ParsedFunction
    value = -x*cos(pi/3)
  [../]

  [./tr_y]
    type = ParsedFunction
    value = x*sin(pi/3)
  [../]

  [./itr_x]
    type = ParsedFunction
    value = -x/cos(pi/3)
  [../]

  [./itr_y]
    type = ParsedFunction
    value = 0
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
    x_center = 2
    y_center = -1
    x_spread = 0.25
    y_spread = 0.5
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./x]
      primary = 1
      secondary = 4
      transform_func = 'tr_x tr_y'
      inv_transform_func = 'itr_x itr_y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  num_steps = 6
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_trapezoid
  exodus = true
[]

test/tests/transfers/multiapp_interpolation_transfer/tosub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_master]
  [../]
  [./elemental_from_master]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./radial_from_master]
  [../]
  [./radial_elemental_from_master]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./disp_x]
    initial_condition = -0.2
  [../]
  [./disp_y]
  [../]
  [./displaced_target_from_master]
  [../]
  [./displaced_source_from_master]
  [../]
  [./elemental_from_master_elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./nodal_from_master_elemental]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/sm/frictionless_lm_sm.i

[Mesh]
  patch_size = 80
  [file]
    type = FileMeshGenerator
    file = sliding_elastic_blocks_2d.e
  []
  [slave]
    input = file
    type = LowerDBlockFromSidesetGenerator
    sidesets = '3'
    new_block_id = '30'
  []
  [master]
    input = slave
    type = LowerDBlockFromSidesetGenerator
    sidesets = '2'
    new_block_id = '20'
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
  [normal_lm]
    block = '30'
  []
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    block = '1 2'
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 15
  dt = 0.1
  dtmin = 0.01
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
  timestep_tolerance = 1e-6
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  sync_times = '1 2 3 4 5 6 7 8 9 10 11 12 13 14 15'
  [out]
    type = Exodus
    sync_only = true
  []
  [dof]
    execute_on = 'initial'
    type = DOFMap
  []
  [csv]
    type = CSV
    execute_on = 'nonlinear timestep_end'
  []
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = 3
    master = 2
    variable = normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = min
    use_displaced_mesh = true
  [../]
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '3'
    master_subdomain = '20'
    slave_subdomain = '30'
    variable = normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '3'
    master_subdomain = '20'
    slave_subdomain = '30'
    variable = normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [lin]
    type = NumLinearIterations
  []
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '30'
    execute_on = 'nonlinear timestep_end'
  []
[]

test/tests/multiapps/stateful_material_sub_cycling/material_sub_app_test_sub.i

[Problem]
  solve = false
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./x]
    family = SCALAR
    order = FIRST
  [../]
[]

[AuxScalarKernels]
  [./const_x]
    type = ConstantScalarAux
    variable = x
    value = 0
  [../]
[]

[Materials]
  [./stateful]
    type = StatefulMaterial
  [../]
[]

[Executioner]
  type = Transient
[]

[Postprocessors]
  [./matl_integral]
    type = ElementIntegralMaterialProperty
    mat_prop = diffusivity
    execute_on = timestep_end
    outputs = 'console csv'
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/porous_flow/test/tests/actions/addmaterials.i

# Test that the PorousFlowAddMaterialAction correctly handles the case where
# materials are added with the default add_nodes parameter, as well as
# at_nodes = true, to make sure that the action doesn't add a duplicate material

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pwater]
    initial_condition = 1e6
  [../]
  [./sgas]
    initial_condition = 0.3
  [../]
  [./temperature]
    initial_condition = 50
  [../]
[]

[AuxVariables]
  [./x0]
    initial_condition = 0.1
  [../]
  [./x1]
    initial_condition = 0.5
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pwater
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sgas
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pwater
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = sgas
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temperature
  [../]
  [./heat_advection]
    type = PorousFlowHeatAdvection
    variable = temperature
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pwater sgas temperature'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-5
    pc_max = 1e7
    sat_lr = 0.1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
      cv = 2
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1e9
      viscosity = 1e-4
      density0 = 20
      thermal_expansion = 0
      cv = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./temperature_nodal]
    type = PorousFlowTemperature
    at_nodes = true
    temperature = 50
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = pwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./ppss_nodal]
    type = PorousFlow2PhasePS
    at_nodes = true
    phase0_porepressure = pwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'x0 x1'
  [../]
  [./massfrac_nodal]
    type = PorousFlowMassFraction
    at_nodes = true
    mass_fraction_vars = 'x0 x1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid0_nodal]
    type = PorousFlowSingleComponentFluid
    at_nodes = true
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./simple_fluid1_nodal]
    type = PorousFlowSingleComponentFluid
    at_nodes = true
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.11
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
    s_res = 0.01
    sum_s_res = 0.11
  [../]
  [./relperm0_nodal]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    at_nodes = true
  [../]
  [./relperm1_nodal]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
    at_nodes = true
  [../]
  [./porosity_nodal]
    type = PorousFlowPorosityConst
    porosity = 0.1
    at_nodes = true
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.0
    density = 125
  [../]
  [./unused]
    type = GenericConstantMaterial
    prop_names = unused
    prop_values = 0
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
  nl_abs_tol = 1e-14
[]

test/tests/test_harness/csvdiff.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5 # Gold file only has 4 steps
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [./num_dofs]
    type = NumDOFs
  [../]
[]

[Outputs]
  csv = true
  perf_graph = true
[]

test/tests/misc/check_error/multi_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true

  # We can't control perf log output from a subapp
  perf_graph = true
[]

modules/richards/test/tests/broadbridge_white/bw02.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 200
  ny = 1
  xmin = -10
  xmax = 10
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-1 5E-1 5E-1'
    x = '0 1 10'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 10
    bulk_mod = 2E9
  [../]
  [./SeffBW]
    type = RichardsSeff1BWsmall
    Sn = 0.0
    Ss = 1.0
    C = 1.5
    las = 2
  [../]
  [./RelPermBW]
    type = RichardsRelPermBW
    Sn = 0.0
    Ss = 1.0
    Kn = 0
    Ks = 1
    C = 1.5
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E2
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -9E2
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffBW
    pressure_vars = pressure
  [../]
[]


[BCs]
  active = 'recharge'
  [./recharge]
    type = RichardsPiecewiseLinearSink
    variable = pressure
    boundary = 'right'
    pressures = '-1E10 1E10'
    bare_fluxes = '-1.25 -1.25' # corresponds to Rstar being 0.5 because i have to multiply by density*porosity
    use_mobility = false
    use_relperm = false
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.25
    mat_permeability = '1 0 0  0 1 0  0 0 1'
    density_UO = DensityConstBulk
    relperm_UO = RelPermBW
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffBW
    viscosity = 4
    gravity = '-0.1 0 0'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 2

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]


[Outputs]
  file_base = bw02
  interval = 10000
  execute_on = 'timestep_end final'
  exodus = true
[]

modules/stochastic_tools/test/tests/vectorpostprocessors/stochastic_results_complete_history/master.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 3
    distributions = 'uniform_left uniform_right'
    execute_on = 'INITIAL TIMESTEP_BEGIN'
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
    execute_on = 'INITIAL TIMESTEP_BEGIN'
  []
[]

[Transfers]
  [runner]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
  []
  [data]
    type = SamplerPostprocessorTransfer
    multi_app = sub
    sampler = sample
    to_vector_postprocessor = storage
    from_postprocessor = avg
  []
[]

[VectorPostprocessors]
  [storage]
    type = StochasticResults
    parallel_type = REPLICATED
    samplers = sample
    contains_complete_history = true
    execute_on = 'INITIAL TIMESTEP_END'
  []
[]

[Executioner]
  type = Transient
  num_steps = 2
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  [out]
    type = CSV
  []
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update8.i

# MC update version, with only Tensile with tensile strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0
    internal_limit = 2E-3
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 -1 0.5  1 1.9 0  0.5 0 3'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/jacobian/cwp08.i

# Capped weak-plane plasticity
# checking jacobian for shear + compression failure
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 1
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 1.0
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.1
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 100
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 0.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 1  0 0 -1  1 -1 0'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 0
    smoothing_tol = 2
    yield_function_tol = 1E-10
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/restart/restart_transient_from_steady/restart_from_steady.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Problem]
  restart_file_base = steady_out_cp/LATEST
  skip_additional_restart_data = true
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 'left'
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 2
  [../]
[]

[Postprocessors]
  [./unorm]
    type = ElementL2Norm
    variable = u
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  # Reset the start_time here
  start_time = 0.0
  num_steps = 5
  dt = .1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_added_mass_dyn_variable_action.i

# Test for small strain euler beam vibration in y direction
# The velocity and acceleration AuxVariables and the corresponding AuxKernels
# are set up using the LineElementAction using add_dynamic_variables. The action
# also creates the displacement variables, stress divergence kernels and
# beam strain. NodalTranslationalInertia is not created by the action.

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The beam is massless with a lumped mass at the end of the beam
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 1e4
# Shear modulus (G) = 4e7
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 0.01
# Iy = 1e-4 = Iz
# Length (L)= 4 m
# mass (m) = 0.01899772

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 6.4e6
# Therefore, the beam behaves like a Euler-Bernoulli beam.

# The theoretical first frequency of this beam is:
# f1 = 1/(2 pi) * sqrt(3EI/(mL^3)) = 0.25

# This implies that the corresponding time period of this beam is 4s.

# The FEM solution for this beam with 10 element gives time periods of 4s with time step of 0.01s.
# A higher time step of 0.1 s is used in the test to reduce computational time.

# The time history from this analysis matches with that obtained from Abaqus.

# Values from the first few time steps are as follows:
# time   disp_y                vel_y                accel_y
# 0.0    0.0                   0.0                  0.0
# 0.1    0.0013076435060869    0.026152870121738    0.52305740243477
# 0.2    0.0051984378734383    0.051663017225289   -0.01285446036375
# 0.3    0.010269120909367     0.049750643493289   -0.02539301427625
# 0.4    0.015087433925158     0.046615616822532   -0.037307519138892
# 0.5    0.019534963888307     0.042334982440433   -0.048305168503101

[Mesh]
  type = GeneratedMesh
  xmin = 0.0
  xmax = 4.0
  nx = 10
  dim = 1
  displacements = 'disp_x disp_y disp_z'
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
  [./x_inertial]
    type = NodalTranslationalInertia
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
  [../]
  [./y_inertial]
    type = NodalTranslationalInertia
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
  [../]
  [./z_inertial]
    type = NodalTranslationalInertia
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 10.0'
    y = '0.0 1e-2  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  petsc_options_iname = '-ksp_type -pc_type'
  petsc_options_value = 'preonly   lu'

  dt = 0.1
  end_time = 5.0
  timestep_tolerance = 1e-6
[]

[Modules/TensorMechanics/LineElementMaster]
  [./all]
    add_variables = true
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'

    # Geometry parameters
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    y_orientation = '0.0 1.0 0.0'

    # Add AuxVariables and AuxKernels for dynamic simulation
    add_dynamic_variables = true

    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'

    beta = 0.25 # Newmark time integration parameter
    gamma = 0.5 # Newmark time integration parameter
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e4
    poissons_ratio = -0.999875
    shear_coefficient = 1.0
    block = 0
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  file_base = 'dyn_euler_small_added_mass_out'
  hide = 'rot_vel_x rot_vel_y rot_vel_z rot_accel_x rot_accel_y rot_accel_z'
  exodus = true
  csv = true
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test4nnstt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4tt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.09
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.09
    normal_smoothing_method = nodal_normal_based
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test4nnstt_out
  exodus = true
[]

[NodalNormals]
  boundary = 11
  corner_boundary = 20
[]

test/tests/mesh_modifiers/mesh_side_set/test.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 4
  elem_type = TET4
[]

[MeshModifiers]
  [./left_block]
    type = SubdomainBoundingBox
    block_id = 1
    block_name = left_block
    bottom_left = '0 0 0'
    top_right = '0.5 1 1'
  [../]
  [./right_block]
    type = SubdomainBoundingBox
    block_id = 2
    block_name = right_block
    bottom_left = '0.5 0 0'
    top_right = '1 1 1'
  [../]
  [./center_side_set]
    type = SideSetsBetweenSubdomains
    master_block = left_block
    paired_block = right_block
    new_boundary = center_side_set
    depends_on = 'left_block right_block'
  [../]
  [./center_mesh]
    type = MeshSideSet
    boundaries = center_side_set
    block_id = 10
    block_name = center_mesh
    depends_on = 'center_side_set'
  [../]
[]

[Variables]
  [./c_volume]
    [./InitialCondition]
      type = FunctionIC
      function = '1-(x-0.5)^2+(y-0.5)^2+(z-0.5)^2'
    [../]
  [../]
  [./c_plane]
    block = 'center_mesh'
  [../]
[]

[Kernels]
  [./volume_diff]
    type = Diffusion
    variable = c_volume
    block = 'left_block right_block'
  [../]
  [./volume_dt]
    type = TimeDerivative
    variable = c_volume
    block = 'left_block right_block'
  [../]

  # couple the lower dimensional variable to the volume variable
  [./plane_reaction]
    type = Reaction
    variable = c_plane
    block = 'center_mesh'
  [../]
  [./plane_coupled]
    type = CoupledForce
    variable = c_plane
    v = c_volume
    block = 'center_mesh'
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.01
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/recompute_radial_return/isotropic_plasticity_errors.i

# This simulation uses the piece-wise linear strain hardening model
# with the incremental small strain formulation; incremental small strain
# is required to produce the strain_increment for the DiscreteRadialReturnStressIncrement
# class, which handles the calculation of the stress increment to return
# to the yield surface in a J2 (isotropic) plasticity problem.
#
#  This test is used to check the error messages in the discrete radial return
# model DiscreteRRIsotropicPlasticity; cli_args are used to check all of the
# error messages in the DiscreteRRIsotropicPlasticity model.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t*(0.0625)
  [../]
  [./harden_func]
    type = PiecewiseLinear
    x = '0  0.0003 0.0007 0.0009'
    y = '50    52    54    56'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_yy plastic_strain_xx plastic_strain_yy plastic_strain_zz'
  [../]
[]

[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
  [../]
  [./isotropic_plasticity]
    type = IsotropicPlasticityStressUpdate
    relative_tolerance = 1e-25
    absolute_tolerance = 1e-5
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    tangent_operator = elastic
    inelastic_models = 'isotropic_plasticity'
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-18
  nl_abs_tol = 1e-10
  l_tol = 1e-12

  start_time = 0.0
  end_time = 0.025
  dt = 0.00125
  dtmin = 0.0001
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/functions/solution_function/solution_function_exodus_test.i

# [Executioner]
# type = Steady
# petsc_options = '-snes'
# l_max_its = 800
# nl_rel_tol = 1e-10
# []

[Mesh]
  type = FileMesh
  file = cubesource.e
  # This test uses SolutionUserObject which doesn't work with DistributedMesh.
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  # [./ne]
  # order = FIRST
  # family = LAGRANGE
  # [../]
  # [./ee]
  # order = CONSTANT
  # family = MONOMIAL
  # [../]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
  [./en]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  # [./sourcee]
  # type = SolutionFunction
  # file_type = exodusII
  # mesh = cubesource.e
  # variable = source_element
  # [../]
  [./sourcen]
    type = SolutionFunction
    scale_factor = 2.0
    solution = cube_soln
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  # [./ne]
  # type = FunctionAux
  # variable = ne
  # function = sourcee
  # [../]
  # [./ee]
  # type = FunctionAux
  # variable = ee
  # function = sourcee
  # [../]
  [./nn]
    type = FunctionAux
    variable = nn
    function = sourcen
  [../]
  [./en]
    type = FunctionAux
    variable = en
    function = sourcen
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]
[]

[UserObjects]
  [./cube_soln]
    type = SolutionUserObject
    timestep = 2
    system_variables = source_nodal
    mesh = cubesource.e
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'
  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 50
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/inelastic_strain/creep/creep_nl1.i

#
# Test for effective strain calculation.
# Boundary conditions from NAFEMS test NL1
#
# This is not a verification test. This is the creep analog of the same test
# in the elas_plas directory. Instead of using the IsotropicPlasticity
# material model this test uses the PowerLawCreep material model.
#
[GlobalParams]
  temperature = temp
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = one_elem2.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./temp]
    initial_condition = 600.0
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eff_creep_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    decomposition_method = EigenSolution
  [../]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = VonMisesStress
    execute_on = timestep_end
  [../]
  [./pressure]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = pressure
    scalar_type = Hydrostatic
    execute_on = timestep_end
  [../]
  [./elastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./elastic_strain_yy]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./elastic_strain_zz]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    rank_two_tensor = creep_strain
    variable = creep_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./creep_strain_yy]
    type = RankTwoAux
    rank_two_tensor = creep_strain
    variable = creep_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./creep_strain_zz]
    type = RankTwoAux
    rank_two_tensor = creep_strain
    variable = creep_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./tot_strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = tot_strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./tot_strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = tot_strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./tot_strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = tot_strain_zz
    index_i = 2
    index_j = 2
  [../]
  [./eff_creep_strain]
    type = MaterialRealAux
    property = effective_creep_strain
    variable = eff_creep_strain
  [../]
[]

[Functions]
  [./appl_dispy]
    type = PiecewiseLinear
    x = '0     1.0     2.0'
    y = '0.0 0.25e-4 0.50e-4'
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 101
    value = 0.0
  [../]
  [./origin_x]
    type = DirichletBC
    variable = disp_x
    boundary = 103
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 102
    value = 0.0
  [../]
  [./origin_y]
    type = DirichletBC
    variable = disp_y
    boundary = 103
    value = 0.0
  [../]
  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = appl_dispy
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = '1 2'
    value = 600.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    youngs_modulus = 250e9
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputePlaneFiniteStrain
    block = 1
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    block = 1
    inelastic_models = 'powerlawcrp'
  [../]
  [./powerlawcrp]
    type = PowerLawCreepStressUpdate
    block = 1
    coefficient = 3.125e-14
    n_exponent = 5.0
    m_exponent = 0.0
    activation_energy = 0.0
  [../]
  [./thermal]
    type = HeatConductionMaterial
    block = 1
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]
  [./density]
    type = Density
    block = 1
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-6
  l_max_its = 100
  nl_max_its = 20

  dt = 1.0
  start_time = 0.0
  num_steps = 100
  end_time = 2.0
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./stress_xy]
    type = ElementAverageValue
    variable = stress_xy
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./pressure]
    type = ElementAverageValue
    variable = pressure
  [../]
  [./el_strain_xx]
    type = ElementAverageValue
    variable = elastic_strain_xx
  [../]
  [./el_strain_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./el_strain_zz]
    type = ElementAverageValue
    variable = elastic_strain_zz
  [../]
  [./crp_strain_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
  [../]
  [./crp_strain_yy]
    type = ElementAverageValue
    variable = creep_strain_yy
  [../]
  [./crp_strain_zz]
    type = ElementAverageValue
    variable = creep_strain_zz
  [../]
  [./eff_creep_strain]
    type = ElementAverageValue
    variable = eff_creep_strain
  [../]
  [./tot_strain_xx]
    type = ElementAverageValue
    variable = tot_strain_xx
  [../]
  [./tot_strain_yy]
    type = ElementAverageValue
    variable = tot_strain_yy
  [../]
  [./tot_strain_zz]
    type = ElementAverageValue
    variable = tot_strain_zz
  [../]
  [./disp_x1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_x
  [../]
  [./disp_x4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_x
  [../]
  [./disp_y1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/energy_conservation/heat04_action_KT.i

# heat04, but using an action with KT stabilization.
# See heat04.i for a full discussion of the results.
# The KT stabilization should have no impact as there is no flow, but this input file checks that MOOSE runs.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.5
      cv = 2
      cp = 2
      bulk_modulus = 2.0
      density0 = 3.0
    [../]
  [../]
[]

[PorousFlowUnsaturated]
  coupling_type = ThermoHydroMechanical
  displacements = 'disp_x disp_y disp_z'
  porepressure = pp
  temperature = temp
  dictator_name = Sir
  biot_coefficient = 1.0
  gravity = '0 0 0'
  fp = the_simple_fluid
  van_genuchten_alpha = 1.0E-12
  van_genuchten_m = 0.5
  relative_permeability_type = Corey
  relative_permeability_exponent = 0.0
  stabilization = KT
  flux_limiter_type = superbee
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = Sir
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pp]
  [../]
  [./temp]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
[]

[Kernels]
  [./heat_source]
    type = BodyForce
    function = 1
    variable = temp
  [../]
[]

[Functions]
  [./err_T_fcn]
    type = ParsedFunction
    vars = 'por0 rte temp rd rhc m0 fhc source'
    vals = '0.5 0.25 t0   5  0.2 1.5 2  1'
    value = '((1-por0)*exp(rte*temp)*rd*rhc*temp+m0*fhc*temp-source*t)/(source*t)'
  [../]
  [./err_pp_fcn]
    type = ParsedFunction
    vars = 'por0 rte temp rd rhc m0 fhc source bulk pp fte'
    vals = '0.5 0.25 t0   5  0.2 1.5 2  1      2    p0 0.5'
    value = '(bulk*(fte*temp-log(1+(por0-1)*exp(rte*temp))+log(por0))-pp)/pp'
  [../]
[]

[AuxVariables]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./porosity]
    type = PorousFlowPorosity
    thermal = true
    fluid = true
    mechanical = true
    ensure_positive = false
    biot_coefficient = 1.0
    porosity_zero = 0.5
    thermal_expansion_coeff = 0.25
    solid_bulk = 2
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 0.2
    density = 5.0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0 0 0 0 0 0 0 0 0'
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '0 0 0  0 0 0  0 0 0'
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = pp
  [../]
  [./t0]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = temp
  [../]
  [./porosity]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = porosity
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./fluid_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
  [./total_heat]
    type = PorousFlowHeatEnergy
    phase = 0
    execute_on = 'timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
  [./err_T]
    type = FunctionValuePostprocessor
    function = err_T_fcn
  [../]
  [./err_P]
    type = FunctionValuePostprocessor
    function = err_pp_fcn
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 5
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = heat04_action
  csv = true
[]

modules/porous_flow/test/tests/jacobian/basic_advection2.i

# Basic advection with 1 porepressure as a PorousFlow variable
# Fully saturated
# Constant permeability
# Constant viscosity
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./u]
  [../]
  [./P]
  [../]
[]

[ICs]
  [./P]
    type = RandomIC
    variable = P
  [../]
  [./u]
    type = RandomIC
    variable = u
  [../]
[]

[Kernels]
  [./dummy_P]
    type = NullKernel
    variable = P
  [../]
  [./u_advection]
    type = PorousFlowBasicAdvection
    variable = u
    phase = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = P
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1
    m = 0.6
    sat_lr = 0.1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 3
      density0 = 4
      thermal_expansion = 0
      viscosity = 150.0
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
  [../]
  [./ppss_qp]
    type = PorousFlow1PhaseP
    porepressure = P
    capillary_pressure = pc
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '5 0 0 0 5 0 0 0 5'
  [../]
  [./relperm_qp]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./darcy_velocity_qp]
    type = PorousFlowDarcyVelocityMaterial
    gravity = '0.25 0 0'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-snes_type'
    petsc_options_value = ' test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

test/tests/bcs/periodic/periodic_level_1_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  nz = 0
  xmax = 20
  ymax = 16
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 3
  parallel_type = replicated # This is because of floating point roundoff being different with DistributedMesh
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 1e-5
  [../]

  [./conv]
    type = Convection
    variable = u
    velocity = '-0.4 0 0'
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
    x_center = 6.0
    y_center = 8.0
    x_spread = 1.0
    y_spread = 2.0
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./x]
      variable = u
      primary = 3
      secondary = 1
      translation = '20 0 0'
    [../]

    [./y]
      variable = u
      primary = 0
      secondary = 2
      translation = '0 16 0'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 2
  num_steps = 7

  [./Adaptivity]
    refine_fraction = .80
    coarsen_fraction = .2
    max_h_level = 4
    error_estimator = KellyErrorEstimator
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/kernels/ad_transient_diffusion/ad_transient_vector_diffusion.i

[Mesh]
  [./generator]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 10
  [../]
  [./block1]
    type = SubdomainBoundingBoxGenerator
    input = generator
    bottom_left = '0 0 -1'
    top_right = '1 1 1'
    block_id = 1
  [../]
  [./block2]
    type = SubdomainBoundingBoxGenerator
    input = block1
    bottom_left = '0.33 0.33 -1'
    top_right = '0.67 0.67 1'
    block_id = 2
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE_VEC
  [../]
[]

[ICs]
  [./u]
    type = VectorConstantIC
    variable = u
    x_value = 1
    y_value = 2
    z_value = 3
    block = 2
  [../]
[]

[Kernels]
  [./diff]
    type = ADVectorDiffusion
    variable = u
  [../]
  [./time]
    type = ADVectorTimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.01
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/oversample/over_sampling_test_file.i

[Mesh]
  type = FileMesh
  file = square_3x3.e
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = -4+(x*x+y*y)
  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = THIRD
    family = HERMITE
  [../]
[]

[Kernels]
  active = 'ie diff ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '1 2 3 4'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.2
  start_time = 0
  num_steps = 5
[]

[Outputs]
  file_base = out_file
  exodus = true
  [./oversampling]
    file_base = out_file_oversample
    type = Exodus
    refinements = 3
  [../]
[]

modules/tensor_mechanics/test/tests/recompute_radial_return/affine_plasticity.i

# Affine Plasticity Test for Transient Stress Eigenvalues with Stationary Eigenvectors

# This test is taken from K. Jamojjala, R. Brannon, A. Sadeghirad, J. Guilkey,
#  "Verification tests in solid mechanics," Engineering with Computers, Vol 31.,
#  p. 193-213.

# The test involves applying particular strains and expecting particular stresses.

# The material properties are:
#  Yield in shear     165 MPa
#  Shear modulus       79 GPa
#  Poisson's ratio    1/3

# The strains are:
#  Time        e11        e22        e33
#  0             0          0          0
#  1        -0.003     -0.003      0.006
#  2    -0.0103923          0  0.0103923

# The expected stresses are:
#  sigma11:
#   -474*t                             0 < t <= 0.201
#   -95.26                             0.201 < t <= 1
#   (189.4+0.1704*sqrt(a)-0.003242*a)
#   ---------------------------------  1 < t <= 2
#            1+0.00001712*a
#   -189.4                             t > 2 (paper erroneously gives a positive value)
#
#  sigma22:
#   -474*t                             0 < t <= 0.201
#   -95.26                             0.201 < t <= 1
#   -(76.87+1.443*sqrt(a)-0.001316*a)
#   ---------------------------------  1 < t <= 2 (paper gives opposite sign)
#             1+0.00001712*a
#   76.87                              t > 2
#
#  sigma33:
#   948*t                              0 < t <= 0.201
#   190.5                              0.201 < t <= 1
#   -(112.5-1.272*sqrt(a)-0.001926*a)
#   ---------------------------------  1 < t <= 2 (paper has two sign errors here)
#            1+0.00001712*a
#   112.5                              t > 2
#
#  where a = exp(12.33*t).
#
# Note: If planning to run this case with strain type ComputeFiniteStrain, the
#   displacement function must be adjusted.  Instead of
#     strain = (l - l0)/l0 = (u+l0 - l0)/l0 = u/l0
#   with l0=1.0, we would have
#     strain = log(l/l0) = log((u+l0)/l0)
#   with l0=1.0.  So, for strain = -0.003,
#     -0.003 = log((u+l0)/l0) ->
#     u = exp(-0.003)*l0 - l0 = -0.0029955044966269995.
#


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = '0'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Functions]
  [./disp_x]
    type = PiecewiseLinear
    x = '0.  1.     2.'
    y = '0. -0.003 -0.0103923'
  [../]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.  1.    2.'
    y = '0. -0.003 0.'
  [../]
  [./disp_z]
    type = PiecewiseLinear
    x = '0. 1.    2.'
    y = '0. 0.006 0.0103923'
  [../]
  [./stress_xx]
    type = ParsedFunction
    # The paper gives 0.201 as the time at initial yield, but 0.20097635952803425 is the exact value.
    # The paper gives -95.26 MPa as the stress at yield, but -95.26279441628823 is the exact value.
    # The paper gives 12.33 as the factor in the exponential, but 12.332921390339125 is the exact value.
    # 189.409039923814000, 0.170423791206825, -0.003242011311945, 1.711645501845780E-05 - exact values
    vars = 'timeAtYield stressAtYield expFac a b c d'
    vals = '0.20097635952803425 -95.26279441628823 12.332921390339125 189.409039923814000 0.170423791206825 -0.003242011311945 1.711645501845780E-05'
    value = '1e6*
             if(t<=timeAtYield, -474*t,
             if(t<=1, stressAtYield,
             (a+b*sqrt(exp(expFac*t))+c*exp(expFac*t))/(1.0+d*exp(expFac*t))))' # tends to -a
  [../]
  [./stress_yy]
    type = ParsedFunction
    # The paper gives 0.201 as the time at initial yield, but 0.20097635952803425 is the exact value.
    # the paper gives -95.26 MPa as the stress at yield, but -95.26279441628823 is the exact value.
    # The paper gives 12.33 as the factor in the exponential, but 12.332921390339125 is the exact value.
    # -76.867432297315000, -1.442488120272900, 0.001315697947301, 1.711645501845780E-05 - exact values
    vars = 'timeAtYield stressAtYield expFac a b c d'
    vals = '0.20097635952803425 -95.26279441628823 12.332921390339125 -76.867432297315000 -1.442488120272900 0.001315697947301 1.711645501845780E-05'
    value = '1e6*
             if(t<=timeAtYield, -474*t,
             if(t<=1, stressAtYield,
             (a+b*sqrt(exp(expFac*t))+c*exp(expFac*t))/(1.0+d*exp(expFac*t))))' # tends to -a
  [../]
  [./stress_zz]
    type = ParsedFunction
    # The paper gives 0.201 as the time at initial yield, but 0.20097635952803425 is the exact value.
    # the paper gives 190.5 MPa as the stress at yield, but 190.52558883257645 is the exact value.
    # The paper gives 12.33 as the factor in the exponential, but 12.332921390339125 is the exact value.
    # -112.541607626499000, 1.272064329066080, 0.001926313364644, 1.711645501845780E-05 - exact values
    vars = 'timeAtYield stressAtYield expFac a b c d'
    vals = '0.20097635952803425 190.52558883257645 12.332921390339125 -112.541607626499000 1.272064329066080 0.001926313364644 1.711645501845780E-05'
    value = '1e6*
             if(t<=timeAtYield, 948*t,
             if(t<=1, stressAtYield,
             (a+b*sqrt(exp(expFac*t))+c*exp(expFac*t))/(1.0+d*exp(expFac*t))))' # tends to -a
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = 'timestep_end'
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = 'timestep_end'
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = 'timestep_end'
  [../]
  [./vonmises]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = vonmisesStress
    execute_on = 'timestep_end'
  [../]

  [./plastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = 'timestep_end'
  [../]
  [./plastic_strain_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_yy
    index_i = 1
    index_j = 1
    execute_on = 'timestep_end'
  [../]
  [./plastic_strain_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_zz
    index_i = 2
    index_j = 2
    execute_on = 'timestep_end'
  [../]
[]

[BCs]
  [./fixed_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixed_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./fixed_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./disp_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = right
    function = disp_x
  [../]
  [./disp_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = disp_y
  [../]
  [./disp_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = disp_z
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 210666666666.666667
    poissons_ratio = 0.3333333333333333
  [../]

  [./strain]
    type = ComputeIncrementalSmallStrain
  [../]

  [./isotropic_plasticity]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 285788383.2488647 # = sqrt(3)*165e6 = sqrt(3) * yield in shear
    hardening_constant = 0.0
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    tangent_operator = elastic
    inelastic_models = 'isotropic_plasticity'
  [../]
[]

[Executioner]

  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 0.01 # use 0.0001 for a nearly exact match
  end_time = 2.0
[]

[Postprocessors]
  [./analytic_xx]
    type = FunctionValuePostprocessor
    function = stress_xx
  [../]
  [./analytic_yy]
    type = FunctionValuePostprocessor
    function = stress_yy
  [../]
  [./analytic_zz]
    type = FunctionValuePostprocessor
    function = stress_zz
  [../]

  [./stress_xx]
    type = ElementalVariableValue
    variable = stress_xx
    elementid = 0
  [../]
  [./stress_yy]
    type = ElementalVariableValue
    variable = stress_yy
    elementid = 0
  [../]
  [./stress_zz]
    type = ElementalVariableValue
    variable = stress_zz
    elementid = 0
  [../]

  [./stress_xx_l2_error]
    type = ElementL2Error
    variable = stress_xx
    function = stress_xx
  [../]
  [./stress_yy_l2_error]
    type = ElementL2Error
    variable = stress_yy
    function = stress_yy
  [../]
  [./stress_zz_l2_error]
    type = ElementL2Error
    variable = stress_zz
    function = stress_zz
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/frictional_contact/single_point_2d/sm/single_point_2d_tp_sm.i

[Mesh]
  file = single_point_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./horizontal_movement]
    type = ParsedFunction
    value = t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
  [../]
[]

[AuxKernels]
  [./incslip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./incslip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./botx2]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./boty2]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = -0.005
  [../]
[]

[Materials]
  [./bottom]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e9
  [../]
  [./top]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu    superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 200
  dt = 0.001
  end_time = 0.01
  num_steps = 1000
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  dtmin = 0.001
  l_tol = 1e-3
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = coulomb
    system = constraint
    friction_coefficient = '0.25'
    formulation = tangential_penalty
    penalty = 1e10
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    master = '2'
    slave = '3'
  [../]
[]

modules/tensor_mechanics/test/tests/2D_different_planes/planestrain_xy.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
 file = square_xy_plane.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./plane_strain]
    block = 1
    strain = SMALL
    out_of_plane_direction = z
    planar_formulation = PLANE_STRAIN
    eigenstrain_names = 'eigenstrain'
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy strain_zz'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 3
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_stress]
    type = ComputeLinearElasticStress
    block = 1
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-10

# controls for nonlinear iterations
  nl_max_its = 10
  nl_rel_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  file_base = planestrain_xy_small_out
  [./exodus]
    type = Exodus
  [../]
[]

modules/combined/test/tests/contact/4ElemTensionRelease.i

[Mesh]
  file = 4ElemTensionRelease.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1      2 3'
    y = '0 0.0001 0 -.0001'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  []
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = frictionless
    tangential_tolerance = 0.01
    system = Constraint
  [../]
[]

[BCs]
  [./lateral]
    type = DirichletBC
    variable = disp_x
    boundary = '1 4'
    value = 0
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = up
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 10
  dt = 0.2
  dtmin = 0.2
  end_time = 3

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  exodus = true
[]

modules/chemical_reactions/test/tests/kinetic_rate/arrhenius.i

# Check the correct temperature dependence of the kinetic rate constant using
# the Arrhenius equation. Two kinetic reactions take place at different system
# temperatures. The Arrhenius equation states that the kinetic rate increases
# with temperature, so more mineral should be precipitated for the higher system
# temperature. In this case, the AuxVariables kinetic_rate1 and mineral1 should
# be larger than kinetic_rate0 and mineral0.

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a0]
    initial_condition = 0.1
  [../]
  [./b0]
    initial_condition = 0.1
  [../]
  [./a1]
    initial_condition = 0.1
  [../]
  [./b1]
    initial_condition = 0.1
  [../]
[]

[AuxVariables]
  [./mineral0]
  [../]
  [./mineral1]
  [../]
  [./kinetic_rate0]
  [../]
  [./kinetic_rate1]
  [../]
[]

[AuxKernels]
  [./kinetic_rate0]
    type = KineticDisPreRateAux
    variable = kinetic_rate0
    e_act = 1.5e4
    r_area = 1
    log_k = -6
    ref_kconst = 1e-8
    gas_const = 8.31434
    ref_temp = 298.15
    sys_temp = 298.15
    sto_v = '1 1'
    v = 'a0 b0'
  [../]
  [./kinetic_rate1]
    type = KineticDisPreRateAux
    variable = kinetic_rate1
    e_act = 1.5e4
    r_area = 1
    log_k = -6
    ref_kconst = 1e-8
    gas_const = 8.31434
    ref_temp = 298.15
    sys_temp = 323.15
    sto_v = '1 1'
    v = 'a1 b1'
  [../]
  [./mineral0_conc]
    type = KineticDisPreConcAux
    variable = mineral0
    e_act = 1.5e4
    r_area = 1
    log_k = -6
    ref_kconst = 1e-8
    gas_const = 8.31434
    ref_temp = 298.15
    sys_temp = 298.15
    sto_v = '1 1'
    v = 'a0 b0'
  [../]
  [./mineral1_conc]
    type = KineticDisPreConcAux
    variable = mineral1
    e_act = 1.5e4
    r_area = 1
    log_k = -6
    ref_kconst = 1e-8
    gas_const = 8.31434
    ref_temp = 298.15
    sys_temp = 323.15
    sto_v = '1 1'
    v = 'a1 b1'
  [../]
[]

[Kernels]
  [./a0_ie]
    type = PrimaryTimeDerivative
    variable = a0
  [../]
  [./b0_ie]
    type = PrimaryTimeDerivative
    variable = b0
  [../]
  [./a0_r]
    type = CoupledBEKinetic
    variable = a0
    v = mineral0
    weight = 1
  [../]
  [./b0_r]
    type = CoupledBEKinetic
    variable = b0
    v = mineral0
    weight = 1
  [../]
  [./a1_ie]
    type = PrimaryTimeDerivative
    variable = a1
  [../]
  [./b1_ie]
    type = PrimaryTimeDerivative
    variable = b1
  [../]
  [./a1_r]
    type = CoupledBEKinetic
    variable = a1
    v = mineral1
    weight = 1
  [../]
  [./b1_r]
    type = CoupledBEKinetic
    variable = b1
    v = mineral1
    weight = 1
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = porosity
    prop_values = 0.2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  end_time = 1
  dt = 1
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

modules/combined/test/tests/simple_contact/merged.i

[GlobalParams]
  volumetric_locking_correction= false
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = merged.e
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[DiracKernels]
  [./master_x]
    type = ContactMaster
    variable = disp_x
    component = 0
    boundary = 3
    slave = 2
  [../]

  [./master_y]
    type = ContactMaster
    variable = disp_y
    component = 1
    boundary = 3
    slave = 2
  [../]

  [./master_z]
    type = ContactMaster
    variable = disp_z
    component = 2
    boundary = 3
    slave = 2
  [../]

  [./slave_x]
    type = SlaveConstraint
    variable = disp_x
    component = 0
    boundary = 2
    master = 3
  [../]

  [./slave_y]
    type = SlaveConstraint
    variable = disp_y
    component = 1
    boundary = 2
    master = 3
  [../]

  [./slave_z]
    type = SlaveConstraint
    variable = disp_z
    component = 2
    boundary = 2
    master = 3
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]

  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type '
  petsc_options_value = 'lu       '

  line_search = 'none'

  nl_abs_tol = 1e-8

  l_max_its = 20
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/solid_mechanics/test/tests/domain_integral_thermal/interaction_integral_2d.i

#This problem from [Wilson 1979] tests the thermal strain term in the
#interaction integral
#
#theta_e = 10 degrees C; a = 252; E = 207000; nu = 0.3; alpha = 1.35e-5
#
#With uniform_refine = 3, KI converges to
#KI = 5.602461e+02 (interaction integral)
#KI = 5.655005e+02 (J-integral)
#
#Both are in good agreement with [Shih 1986]:
#average_value = 0.4857 = KI / (sigma_theta * sqrt(pi * a))
#sigma_theta = E * alpha * theta_e / (1 - nu)
# = 207000 * 1.35e-5 * 10 / (1 - 0.3) = 39.9214
#KI = average_value * sigma_theta * sqrt(pi * a) = 5.656e+02
#
#References:
#W.K. Wilson, I.-W. Yu, Int J Fract 15 (1979) 377-387
#C.F. Shih, B. Moran, T. Nakamura, Int J Fract 30 (1986) 79-102

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  volumetric_locking_correction = False
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = crack2d.e
#  uniform_refine = 3
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*x/504)
  [../]
[]

[DomainIntegral]
  integrals = 'JIntegral InteractionIntegralKI'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  convert_J_to_K = true
  symmetry_plane = 1
  incremental = true

  # interaction integral parameters
  disp_x = disp_x
  disp_y = disp_y
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  temperature = temp
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 400
    value = 0.0
  [../]

  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = 900
    value = 0.0
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1.35e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
    compute_InteractionIntegral = true
    temp = temp
    stress_free_temperature = 0.0
  [../]
[]


[Executioner]

  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 40

   nl_rel_step_tol= 1e-10
   nl_rel_tol = 1e-10


   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = interaction_integral_2d_out
  exodus = true
  csv = true
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

examples/ex18_scalar_kernel/ex18.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Functions]
  # ODEs
  [./exact_x_fn]
    type = ParsedFunction
    value = (-1/3)*exp(-t)+(4/3)*exp(5*t)
  [../]
  [./exact_y_fn]
    type = ParsedFunction
    value = (2/3)*exp(-t)+(4/3)*exp(5*t)
  [../]
[]

[Variables]
  [./diffused]
    order = FIRST
    family = LAGRANGE
  [../]

  # ODE variables
  [./x]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
  [./y]
    family = SCALAR
    order = FIRST
    initial_condition = 2
  [../]

[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = diffused
  [../]
  [./diff]
    type = Diffusion
    variable = diffused
  [../]
[]

[ScalarKernels]
  [./td1]
    type = ODETimeDerivative
    variable = x
  [../]
  [./ode1]
    type = ImplicitODEx
    variable = x
    y = y
  [../]

  [./td2]
    type = ODETimeDerivative
    variable = y
  [../]
  [./ode2]
    type = ImplicitODEy
    variable = y
    x = x
  [../]
[]


[BCs]
  [./right]
    type = ScalarDirichletBC
    variable = diffused
    boundary = 1
    scalar_var = x
  [../]

  [./left]
    type = ScalarDirichletBC
    variable = diffused
    boundary = 3
    scalar_var = y
  [../]
[]

[Postprocessors]
  # to print the values of x, y into a file so we can plot it
  [./x]
    type = ScalarVariable
    variable = x
    execute_on = timestep_end
  [../]

  [./y]
    type = ScalarVariable
    variable = y
    execute_on = timestep_end
  [../]

  [./exact_x]
    type = FunctionValuePostprocessor
    function = exact_x_fn
    execute_on = timestep_end
    point = '0 0 0'
  [../]

  [./exact_y]
    type = FunctionValuePostprocessor
    function = exact_y_fn
    execute_on = timestep_end
    point = '0 0 0'
  [../]

  # Measure the error in ODE solution for 'x'.
  [./l2err_x]
    type = ScalarL2Error
    variable = x
    function = exact_x_fn
  [../]

  # Measure the error in ODE solution for 'y'.
  [./l2err_y]
    type = ScalarL2Error
    variable = y
    function = exact_y_fn
  [../]
[]


[Executioner]
  type = Transient
  start_time = 0
  dt = 0.01
  num_steps = 10

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

test/tests/interfaces/random/random_uo.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./random_elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./random_elemental]
    type = RandomAux
    variable = random_elemental
    random_user_object = random_uo
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[UserObjects]
  [./random_uo]
    type = RandomElementalUserObject
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/memory_usage/vector_memory_usage.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[GlobalParams]
  order = CONSTANT
  family = MONOMIAL
[]

[Variables]
  [./u]
  [../]
[]

[Adaptivity]
  [./Markers]
    [./box]
      type = BoxMarker
      bottom_left = '0.6 0.7 0'
      top_right = '0.9 0.9 0'
      inside = refine
      outside = do_nothing
    [../]
  [../]
  marker = box
[]

[Problem]
  kernel_coverage_check = false
  solve = false
[]

[VectorPostprocessors]
  [./mem]
    type = VectorMemoryUsage
    execute_on = 'INITIAL TIMESTEP_END NONLINEAR LINEAR'
    report_peak_value = true
    mem_units = kilobytes # or bytes, megabytes, gigabytes
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
[]

[Outputs]
  csv = true
[]

examples/ex18_scalar_kernel/ex18_parsed.i

#
# Example 18 modified to use parsed ODE kernels.
#
# The ParsedODEKernel takes function expressions in the input file and computes
# Jacobian entries via automatic differentiation. It allows for rapid development
# of new models without the need for code recompilation.
#
# This input file should produce the exact same result as ex18.i
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Functions]
  # ODEs
  [./exact_x_fn]
    type = ParsedFunction
    value = (-1/3)*exp(-t)+(4/3)*exp(5*t)
  [../]
  [./exact_y_fn]
    type = ParsedFunction
    value = (2/3)*exp(-t)+(4/3)*exp(5*t)
  [../]
[]

[Variables]
  [./diffused]
    order = FIRST
    family = LAGRANGE
  [../]

  # ODE variables
  [./x]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
  [./y]
    family = SCALAR
    order = FIRST
    initial_condition = 2
  [../]

[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = diffused
  [../]
  [./diff]
    type = Diffusion
    variable = diffused
  [../]
[]

[ScalarKernels]
  [./td1]
    type = ODETimeDerivative
    variable = x
  [../]

  #
  # This parsed expression ODE Kernel behaves exactly as the ImplicitODEx kernel
  # in the main example. Checkout ImplicitODEx::computeQpResidual() in the
  # source code file ImplicitODEx.C to see the matching residual function.
  #
  # The ParsedODEKernel automaticaly generates the On- and Off-Diagonal Jacobian
  # entries.
  #
  [./ode1]
    type = ParsedODEKernel
    function = '-3*x - 2*y'
    variable = x
    args = y
  [../]

  [./td2]
    type = ODETimeDerivative
    variable = y
  [../]

  #
  # This parsed expression ODE Kernel behaves exactly as the ImplicitODEy Kernel
  # in the main example.
  #
  [./ode2]
    type = ParsedODEKernel
    function = '-4*x - y'
    variable = y
    args = x
  [../]
[]


[BCs]
  [./right]
    type = ScalarDirichletBC
    variable = diffused
    boundary = 1
    scalar_var = x
  [../]

  [./left]
    type = ScalarDirichletBC
    variable = diffused
    boundary = 3
    scalar_var = y
  [../]
[]

[Postprocessors]
  # to print the values of x, y into a file so we can plot it
  [./x]
    type = ScalarVariable
    variable = x
    execute_on = timestep_end
  [../]
  [./y]
    type = ScalarVariable
    variable = y
    execute_on = timestep_end
  [../]

  [./exact_x]
    type = FunctionValuePostprocessor
    function = exact_x_fn
    execute_on = timestep_end
  [../]

  [./exact_y]
    type = FunctionValuePostprocessor
    function = exact_y_fn
    execute_on = timestep_end
    point = '0 0 0'
  [../]

  # Measure the error in ODE solution for 'x'.
  [./l2err_x]
    type = ScalarL2Error
    variable = x
    function = exact_x_fn
  [../]

  # Measure the error in ODE solution for 'y'.
  [./l2err_y]
    type = ScalarL2Error
    variable = y
    function = exact_y_fn
  [../]
[]


[Executioner]
  type = Transient
  start_time = 0
  dt = 0.01
  num_steps = 10
  solve_type = 'PJFNK'
[]

[Outputs]
  file_base = 'ex18_out'
  exodus = true
[]

modules/peridynamics/test/tests/simple_tests/2D_irregularD_variableH_OSPD.i

# Test for ordinary state-based peridynamic formulation
# for irregular grid from file mesh with varying bond constants
# partial Jacobian
# Jacobian from bond-based formulation is used for preconditioning

# Square plate with Dirichlet boundary conditions applied
# at the left, top and bottom edges

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./fmg]
    type = FileMeshGenerator
    file = square.e
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = fmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1001
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1004
    value = 0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1002
    function = '-0.001 * t'
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = ORDINARY_STATE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.0
  [../]

  [./force_density]
    type = ComputeSmallStrainVariableHorizonMaterialOSPD
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  end_time = 1
[]

[Outputs]
  file_base = 2D_irregularD_variableH_OSPD
  exodus = true
[]

modules/combined/test/tests/power_law_creep/power_law_creep_restart2.i

# 1x1x1 unit cube with uniform pressure on top face

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy creep_strain_xx creep_strain_yy creep_strain_zz elastic_strain_yy'
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./u_top_pull]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    factor = -10.0e6
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'bottom top'
    value = 1000.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e11
    poissons_ratio = 0.3
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'power_law_creep'
    tangent_operator = elastic
  [../]
  [./power_law_creep]
    type = PowerLawCreepStressUpdate
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    temperature = temp
  [../]

  [./thermal]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]
  [./density]
    type = Density
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.6
  end_time = 1.0
  num_steps = 12
  dt = 0.1
[]

[Outputs]
  file_base = power_law_creep_out
  exodus = true
[]

[Problem]
  restart_file_base = power_law_creep_restart1_out_cp/0006
[]

modules/tensor_mechanics/tutorials/basics/part_3_1.i

#Tensor Mechanics tutorial: the basics
#Step 3, part 1
#3D simulation of uniaxial tension with J2 plasticity

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  [file_mesh]
    type = FileMeshGenerator
    file = necking_quad4.e
  []
  [extrude]
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 0.5'
    num_layers = 2
    bottom_sideset = 'back'
    top_sideset = 'front'
    input = file_mesh
  []
  uniform_refine = 0
  second_order = true
[]

[Modules/TensorMechanics/Master]
  [./block1]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_yy strain_yy'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1e-9
    plastic_models = J2
  [../]
[]

[UserObjects]
  [./hardening]
    type = TensorMechanicsHardeningCubic
    value_0 = 2.4e2
    value_residual = 3.0e2
    internal_0 = 0
    internal_limit = 0.005
  [../]
  [./J2]
    type = TensorMechanicsPlasticJ2
    yield_strength = hardening
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x #change the variable to reflect the new displacement names
    boundary = 1
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z #change the variable to reflect the new displacement names
    boundary = back
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y #change the variable to reflect the new displacement names
    boundary = 3
    value = 0.0
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = disp_y #change the variable to reflect the new displacement names
    boundary = 4
    function = '0.0007*t'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.25
  end_time = 16

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm lu 1 101'
[]

[Postprocessors]
  [./ave_stress_bottom]
    type = SideAverageValue
    variable = stress_yy
    boundary = 3
  [../]
  [./ave_strain_bottom]
    type = SideAverageValue
    variable = strain_yy
    boundary = 3
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
  csv = true
  print_linear_residuals = false
[]

modules/stochastic_tools/test/tests/multiapps/sampler_transient_multiapp/master_transient.i

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Problem]
  kernel_coverage_check = false
  solve = false
[]

[Distributions]
  [uniform_0]
    type = UniformDistribution
    lower_bound = 0.1
    upper_bound = 0.3
  []
[]

[Samplers]
  [mc]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_0'
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
[]

[MultiApps]
  [runner]
    type = SamplerTransientMultiApp
    sampler = mc
    input_files = 'sub.i'
  []
[]

test/tests/userobjects/setup_interface_count/general.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    ny = 2
  []
  [./right_side]
    input = gen
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0.5 0 0'
    block_id = 1
    top_right = '1 1 0'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [./initial] # 1 per simulation
    type = GeneralSetupInterfaceCount
    count_type = 'initial'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./timestep] # 10, once per timestep
    type = GeneralSetupInterfaceCount
    count_type = 'timestep'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./subdomain] # 0, method not implemented for GeneralUserObjects
    type = GeneralSetupInterfaceCount
    count_type = 'subdomain'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./initialize] # 1 for initial and 2 for each timestep
    type = GeneralSetupInterfaceCount
    count_type = 'initialize'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./finalize] # 1 for initial and 2 for each timestep
    type = GeneralSetupInterfaceCount
    count_type = 'finalize'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./execute] # 1 for initial and 2 for each timestep
    type = GeneralSetupInterfaceCount
    count_type = 'execute'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./threadjoin] # 0, not implemented
    type = GeneralSetupInterfaceCount
    count_type = 'threadjoin'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
[]

[Outputs]
  csv = true
[]

test/tests/dampers/interactions/interacting_node_elem_dampers.i

# This model tests interactions between nodal and element dampers.
# The test verifies that the minimum of the value of a nodal and
# element damper is always used.
# If run with the nodal1 and elem1 dampers active, the element damper
# will govern.  With nodal2 and elem2 dampers, the nodal damper governs.

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./source]
    type = BodyForce
    variable = u
    function = 't'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Dampers]
  active = 'nodal1 elem1'
  [./nodal1]
    #gives a damping of 0.3333 on step 6
    type = BoundingValueNodalDamper
    min_value = 0.0
    max_value = 1.0
    variable = u
  [../]
  [./elem1]
    #gives a damping of 0.141536 on step 6
    type = BoundingValueElementDamper
    min_value = 0.0
    max_value = 1.012
    variable = u
  [../]
  [./nodal2]
    #gives a damping of 0.3333 on step 6
    type = BoundingValueNodalDamper
    min_value = 0.0
    max_value = 1.0
    variable = u
  [../]
  [./elem2]
    #gives a damping of 0.743318 on step 6
    type = BoundingValueElementDamper
    min_value = 0.0
    max_value = 1.02
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  end_time = 3.0
  dt = 0.5
  dtmin = 0.5
  nl_max_its = 5
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_2/brick2_aug_sm.i

[Mesh]
  file = brick2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 100
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_x26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_x
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./disp_y26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x7 disp_y7 disp_x26 disp_y26 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    tangential_tolerance = 1e-3
    formulation = augmented_lagrange
    system = constraint
    normalize_penalty = true
    penalty = 1e8
    model = frictionless
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/tensor_mechanics/test/tests/strain_energy_density/incr_model.i

# Single element test to check the strain energy density calculation

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 2
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -100
  [../]
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress strain_xx strain_yy strain_zz'
    planar_formulation = PLANE_STRAIN
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0.0
  [../]
  [./Pressure]
    [./top]
      boundary = 'top'
      function = rampConstantUp
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 30e+6
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./strain_energy_density]
    type = StrainEnergyDensity
    incremental = true
  [../]
[]

[Executioner]
   type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 3e-7
   nl_rel_tol = 1e-12
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1
[]

[Postprocessors]
  [./epxx]
    type = ElementalVariableValue
    variable = strain_xx
    elementid = 0
  [../]
  [./epyy]
    type = ElementalVariableValue
    variable = strain_yy
    elementid = 0
  [../]
  [./epzz]
    type = ElementalVariableValue
    variable = strain_zz
    elementid = 0
  [../]
  [./sigxx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./sigyy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigzz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./SED]
    type = ElementAverageValue
    variable = SED
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/porous_flow/test/tests/sinks/s04.i

# apply a piecewise-linear sink flux and observe the correct behavior
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = y+1
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.3
      density0 = 1.1
      thermal_expansion = 0
      viscosity = 1.1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-5 0 0 0 1E-5 0 0 0 1E-5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[AuxVariables]
  [./flux_out]
  [../]
  [./xval]
  [../]
  [./yval]
  [../]
  [./pt_shift]
    initial_condition = 0.3
  [../]
[]

[ICs]
  [./xval]
    type = FunctionIC
    variable = xval
    function = x
  [../]
  [./yval]
    type = FunctionIC
    variable = yval
    function = y
  [../]
[]

[Functions]
  [./mass10]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)'
    vars = 'vol por dens0 pp bulk'
    vals = '0.25 0.1 1.1 p10 1.3'
  [../]
  [./rate10]
    type = ParsedFunction
    value = 'fcn*if(pp>0.8,1,if(pp<0.3,0.5,0.2+pp))'
    vars = 'fcn pp'
    vals = '8   p10'
  [../]
  [./mass10_expect]
    type = ParsedFunction
    value = 'mass_prev-rate*area*dt'
    vars = 'mass_prev rate     area dt'
    vals = 'm10_prev  m10_rate 0.5 1E-3'
  [../]
  [./mass11]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)'
    vars = 'vol por dens0 pp bulk'
    vals = '0.25 0.1 1.1 p11 1.3'
  [../]
  [./rate11]
    type = ParsedFunction
    value = 'fcn*if(pp>0.8,1,if(pp<0.3,0.5,0.2+pp))'
    vars = 'fcn pp'
    vals = '8   p11'
  [../]
  [./mass11_expect]
    type = ParsedFunction
    value = 'mass_prev-rate*area*dt'
    vars = 'mass_prev rate     area dt'
    vals = 'm11_prev  m11_rate 0.5 1E-3'
  [../]
[]

[Postprocessors]
  [./p00]
    type = PointValue
    point = '0 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./p10]
    type = PointValue
    point = '1 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m10]
    type = FunctionValuePostprocessor
    function = mass10
    execute_on = 'initial timestep_end'
  [../]
  [./m10_prev]
    type = FunctionValuePostprocessor
    function = mass10
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./m10_rate]
    type = FunctionValuePostprocessor
    function = rate10
    execute_on = 'timestep_end'
  [../]
  [./m10_expect]
    type = FunctionValuePostprocessor
    function = mass10_expect
    execute_on = 'timestep_end'
  [../]
  [./p01]
    type = PointValue
    point = '0 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./p11]
    type = PointValue
    point = '1 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m11]
    type = FunctionValuePostprocessor
    function = mass11
    execute_on = 'initial timestep_end'
  [../]
  [./m11_prev]
    type = FunctionValuePostprocessor
    function = mass11
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./m11_rate]
    type = FunctionValuePostprocessor
    function = rate11
    execute_on = 'timestep_end'
  [../]
  [./m11_expect]
    type = FunctionValuePostprocessor
    function = mass11_expect
    execute_on = 'timestep_end'
  [../]
[]

[BCs]
  [./flux]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'right'
    PT_shift = pt_shift
    pt_vals = '0.0 0.5'
    multipliers = '0.5 1'
    variable = pp
    use_mobility = false
    use_relperm = false
    fluid_phase = 0
    flux_function = 8
    save_in = flux_out
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_max_it -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu 10000 NONZERO 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-3
  end_time = 1E-2
  nl_rel_tol = 1E-12
  nl_abs_tol = 1E-12
[]

[Outputs]
  file_base = s04
  [./console]
    type = Console
    execute_on = 'nonlinear linear'
  [../]
  [./csv]
    type = CSV
    execute_on = 'timestep_end'
  [../]
[]

modules/phase_field/test/tests/MaskedBodyForce/MaskedBodyForce_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  elem_type = QUAD
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./c]
  [../]
[]

[ICs]
  [./initial]
    value = 1.0
    variable = u
    type = ConstantIC
  [../]
  [./c_IC]
    int_width = 0.1
    x1 = 0.5
    y1 = 0.5
    radius = 0.25
    outvalue = 0
    variable = c
    invalue = 1
    type = SmoothCircleIC
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./source]
    type = MaskedBodyForce
    variable = u
    value = 1
    mask = mask
  [../]
[]

[Materials]
  [./mask]
    type = ParsedMaterial
    function = if(c>0.5,0,1)
    f_name = mask
    args = c
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/GBAnisotropy/test3.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  nz = 0
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1000
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
  wGB = 100
  length_scale = 1.0e-9
  time_scale = 1.0e-9
[]

[Variables]
  [./PolycrystalVariables]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalCircleGrainIC]
      radius = 333.33
      x = 500
      y = 500
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./bnds_aux]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./Periodic]
    [./top_bottom]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./CuGrGranisotropic]
    type = GBAnisotropy
    T = 600 # K

    # molar_volume_value = 7.11e-6 #Units:m^3/mol
    Anisotropic_GB_file_name = anisotropy.txt

    inclination_anisotropy = true
    delta_sigma = 0.1
    delta_mob = 0.0
  [../]
[]

[Postprocessors]
  [./dt]
    # Outputs the current time step
    type = TimestepSize
  [../]

  [./gr1_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 40
  nl_rel_tol = 1e-9

  num_steps = 1
  dt = 150.0
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  csv = true
[]

test/tests/vectorpostprocessors/least_squares_fit/least_squares_fit_csv_data.i

[Problem]
  solve = false
[]

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[Executioner]
  type = Transient
  start_time = 0.0
  end_time = 0.0
[]

[VectorPostprocessors]
  [./csv_data]
    type = CSVReader
    csv_file = fit_data_0.csv
    header = true
    outputs = none
  [../]
  [./least_squares_fit_coeffs]
    type = LeastSquaresFit
    vectorpostprocessor = csv_data
    x_name = 'id'
    y_name = 'u'
    order = 0
    output = coefficients
    truncate_order = false
    execute_on = initial
  [../]
[]

[Outputs]
  file_base = csv0
  execute_on = initial
  csv = true
[]

modules/combined/test/tests/gap_heat_transfer_htonly/cyl2D_yz.i

#
# 2D Cylindrical Gap Heat Transfer Test.
#
# This test exercises 2D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of an inner solid cylinder of radius = 1 unit, and outer
# hollow cylinder with an inner radius of 2 in the y-z plane. In other words,
# the gap between them is 1 radial unit in length.
#
# The calculated results are the same as for the cyl2D.i case in the x-y plane.

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  [file]
    type = FileMeshGenerator
    file = cyl2D.e
  []
  [./rotate]
    type = TransformGenerator
    transform = ROTATE
    vector_value = '0 90 90'
    input = file
  [../]
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1'
    y = '100 200'
  [../]
[]

[Variables]
  [./temp]
   initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_conductance]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat_conduction]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./gap_cond]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_conductance
    boundary = 2
  [../]
[]

[Materials]
  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 1000000.0
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
    gap_conductivity = 1
    quadrature = true
    gap_geometry_type = CYLINDER
    cylinder_axis_point_1 = '0 0 0'
    cylinder_axis_point_2 = '1 0 0'
  [../]
[]

[BCs]
  [./mid]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]
  [./temp_far_right]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  dt = 1
  dtmin = 0.01
  end_time = 1

  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-7

  [./Quadrature]
     order = fifth
     side_order = seventh
  [../]
[]

[Outputs]
  exodus = true
[]

[Postprocessors]
  [./temp_left]
    type = SideAverageValue
    boundary = 2
    variable = temp
  [../]

  [./temp_right]
    type = SideAverageValue
    boundary = 3
    variable = temp
  [../]

  [./flux_left]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
  [../]

  [./flux_right]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
  [../]
[]

modules/combined/test/tests/power_law_creep/power_law_creep_restart2_sm.i

# 1x1x1 unit cube with uniform pressure on top face

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]
[]


[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./creep_strain_xx]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_xx
    index = 0
  [../]
  [./creep_strain_yy]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_yy
    index = 1
  [../]
  [./creep_strain_zz]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_zz
    index = 2
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]
[]


[BCs]
  [./u_top_pull]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    factor = -10.0e6
    function = top_pull
  [../]

  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'bottom top'
    value = 1000.0
  [../]
[]

[Materials]
  [./creep]
    type = PowerLawCreep
    block = 0
    youngs_modulus = 2.e11
    poissons_ratio = .3
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    formulation = Nonlinear3D
  [../]

  [./thermal]
    type = HeatConductionMaterial
    block = 0
    specific_heat = 1.0
    thermal_conductivity = 100.0
  [../]
  [./density]
    type = Density
    block = 0
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.6
  end_time = 1.0
  num_steps = 12
  dt = 0.1
[]

[Outputs]
  file_base = power_law_creep_out
  exodus = true
[]

[Problem]
  restart_file_base = power_law_creep_restart1_out_cp/0006
[]

test/tests/materials/var_coupling/var_coupling.i

# The purpose of this test is to make sure that MooseVariable dependencies from Materials are properly handled.
#
# It it's not, this test will segfault

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux1]
    initial_condition = 1
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./coupling_u]
    type = VarCouplingMaterial
    block = 0
    var = u
  [../]
[]

[Postprocessors]
  [./aux1_integral]
    type = ElementIntegralVariablePostprocessor
    variable = aux1
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/sinks/s08.i

# apply a sink flux on just one component of a 3-component, 2-phase system and observe the correct behavior
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pwater frac_ph0_c0 pgas'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1.1
  [../]
[]

[Variables]
  [./pwater]
  [../]
  [./frac_ph0_c0]
    initial_condition = 0.3
  [../]
  [./pgas]
  [../]
[]

[ICs]
  [./pwater]
    type = FunctionIC
    variable = pwater
    function = y
  [../]
  [./pgas]
    type = FunctionIC
    variable = pgas
    function = y+3
  [../]
[]

[Kernels]
  [./mass_c0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = frac_ph0_c0
  [../]
  [./mass_c1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = pwater
  [../]
  [./mass_c2]
    type = PorousFlowMassTimeDerivative
    fluid_component = 2
    variable = pgas
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2.3
      density0 = 1.5
      thermal_expansion = 0
      viscosity = 2.1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1.3
      density0 = 1.1
      thermal_expansion = 0
      viscosity = 1.1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = pgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'frac_ph0_c0 frac_ph0_c1 frac_ph1_c0 frac_ph1_c1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0.2 0 0 0 0.1 0 0 0 0.1'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
  [../]
[]

[AuxVariables]
  [./flux_out]
  [../]
  [./frac_ph0_c1]
    initial_condition = 0.35
  [../]
  [./frac_ph1_c0]
    initial_condition = 0.1
  [../]
  [./frac_ph1_c1]
    initial_condition = 0.8
  [../]
[]

[Functions]
  [./mass1_00]
    type = ParsedFunction
    value = 'fgas*vol*por*dens0gas*exp(pgas/bulkgas)*(1-pow(1+pow(al*(pgas-pwater),1.0/(1-m)),-m))+fwater*vol*por*dens0water*exp(pwater/bulkwater)*(pow(1+pow(al*(pgas-pwater),1.0/(1-m)),-m))'
    vars = 'vol  por dens0gas pgas    pwater    bulkgas al  m   dens0water bulkwater fgas           fwater'
    vals = '0.25 0.1 1.1      pgas_00 pwater_00 1.3     1.1 0.5 1.5        2.3       frac_ph1_c1_00 frac_ph0_c1_00'
  [../]
  [./expected_mass_change1_00]
    type = ParsedFunction
    value = 'frac*fcn*area*dt*pow(1-pow(1+pow(al*(pgas-pwater),1.0/(1-m)),-m), 2)'
    vars = 'frac           fcn area dt  pgas    pwater    al m'
    vals = 'frac_ph1_c1_00 100 0.5 1E-3 pgas_00 pwater_00 1.1 0.5'
  [../]
  [./mass1_00_expect]
    type = ParsedFunction
    value = 'mass_prev-mass_change'
    vars = 'mass_prev mass_change'
    vals = 'm1_00_prev  del_m1_00'
  [../]
[]

[Postprocessors]
  [./total_mass_comp0]
    type = PorousFlowFluidMass
    fluid_component = 0
  [../]
  [./total_mass_comp1]
    type = PorousFlowFluidMass
    fluid_component = 1
  [../]
  [./total_mass_comp2]
    type = PorousFlowFluidMass
    fluid_component = 2
  [../]
  [./frac_ph1_c1_00]
    type = PointValue
    point = '0 0 0'
    variable = frac_ph1_c1
    execute_on = 'initial timestep_end'
  [../]
  [./frac_ph0_c1_00]
    type = PointValue
    point = '0 0 0'
    variable = frac_ph0_c1
    execute_on = 'initial timestep_end'
  [../]
  [./flux_00]
    type = PointValue
    point = '0 0 0'
    variable = flux_out
    execute_on = 'initial timestep_end'
  [../]
  [./pgas_00]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    execute_on = 'initial timestep_end'
  [../]
  [./pwater_00]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    execute_on = 'initial timestep_end'
  [../]
  [./m1_00]
    type = FunctionValuePostprocessor
    function = mass1_00
    execute_on = 'initial timestep_end'
  [../]
  [./m1_00_prev]
    type = FunctionValuePostprocessor
    function = mass1_00
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./del_m1_00]
    type = FunctionValuePostprocessor
    function = expected_mass_change1_00
    execute_on = 'timestep_end'
    outputs = 'console'
  [../]
  [./m1_00_expect]
    type = FunctionValuePostprocessor
    function = mass1_00_expect
    execute_on = 'timestep_end'
  [../]
[]

[BCs]
  [./flux_ph1_c1]
    type = PorousFlowSink
    boundary = 'left'
    variable = pwater # sink applied to the mass_c1 Kernel
    use_mobility = false
    use_relperm = true
    mass_fraction_component = 1
    fluid_phase = 1
    flux_function = 100
    save_in = flux_out
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_max_it -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu 100 NONZERO 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-3
  end_time = 0.01
  nl_rel_tol = 1E-12
  nl_abs_tol = 1E-12
[]

[Outputs]
  file_base = s08
  exodus = true
  [./console]
    type = Console
    execute_on = 'nonlinear linear'
  [../]
  [./csv]
    type = CSV
    execute_on = 'timestep_end'
  [../]
[]

modules/combined/test/tests/solid_mechanics/Wave_1_D/Rayleigh_Newmark/wave_bc_1d.i

# Wave propogation in 1-D using Newmark time integration in the
# presence of Rayleigh damping
#
# The test is for an 1-D bar element of length 4m fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the
# other end.  beta and gamma are Newmark time integration parameters
# eta and zeta are mass dependent and stiffness dependent Rayleigh
# damping coefficients, respectively.  The equation of motion in terms
# of matrices is:
#
# M*accel + (eta*M+zeta*K)*vel +K*disp = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# The displacement at the second, third and fourth node at t = 0.1 are
# -7.776268399030435152e-02, 1.949967184623528985e-02 and -4.615737877580032046e-03, respectively
[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]

  [./DynamicTensorMechanics]
    use_displaced_mesh = false
    zeta = 0.1
  [../]
 [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.3025
    gamma = 0.6
    eta=0.1
    use_displaced_mesh = false
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.3025
    gamma = 0.6
    eta=0.1
    use_displaced_mesh = false
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.3025
    gamma = 0.6
    eta = 0.1
    use_displaced_mesh = false
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.6
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
   type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
    [./bottom_x]
      type = DirichletBC
      variable = disp_x
      boundary = bottom
      value=0.0
    [../]
    [./bottom_z]
      type = DirichletBC
      variable = disp_z
      boundary = bottom
      value=0.0
    [../]
    [./bottom_y]
      type = FunctionDirichletBC
      variable = disp_y
      boundary = bottom
      function = displacement_bc
    [../]
[]

[Materials]
  [./constant]
    type = ComputeIsotropicElasticityTensor
    block = '0'
    youngs_modulus = 1.0
    poissons_ratio = 0.0
  [../]

  [./constant_strain]
    type= ComputeFiniteStrain
    block = '0'
  [../]
  [./constant_stress]
    type = ComputeFiniteStrainElasticStress
    block = '0'
  [../]
  [./density]
    type = GenericConstantMaterial
    block = '0'
    prop_names = 'density'
    prop_values = '1'
  [../]
[]


[Executioner]

  type = Transient
  start_time = 0
  end_time = 6.0
  dtmax = 0.1
  dtmin = 0.1
#  l_tol = 1e-8
#  nl_rel_tol = 1e-8
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.001 1 0.001 0.0 0.0'
    scale_factor = 7750
  [../]
  [./displacement_ic]
    type = PiecewiseLinear
    axis = y
    x = '0.0 0.3 0.4 0.5 0.6 0.7 1.0'
    y = '0.0 0.0 0.0001 1.0 0.0001 0.0 0.0'
    scale_factor = 0.1
  [../]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
    [./disp_1]
       type = NodalVariableValue
       nodeid = 1
       variable = disp_y
     [../]
    [./disp_2]
       type = NodalVariableValue
       nodeid = 3
       variable = disp_y
     [../]
    [./disp_3]
       type = NodalVariableValue
       nodeid = 10
       variable = disp_y
     [../]
    [./disp_4]
       type = NodalVariableValue
       nodeid = 14
       variable = disp_y
     [../]
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/jacobian/cwp03.i

# Capped weak-plane plasticity
# checking jacobian for tensile failure, with some shear
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 2
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 1
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 -2  0 0 1  -2 1 2'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 1
    smoothing_tol = 2
    yield_function_tol = 1E-10
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/richards/test/tests/jacobian_2/jn31.i

# two phase with injection borehole (both fully_upwind=true and fully_upwind=false)
#
# unsaturated = true
# gravity = true
# supg = true
# transient = true
# wellbore = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 0.5E-3'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]



[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[DiracKernels]
  [./bh_water]
    type = RichardsBorehole
    bottom_pressure = 1
    point_file = jn30.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pwater
    unit_weight = '0 0 0'
    character = -1E12
  [../]
  [./bh_gas]
    type = RichardsBorehole
    bottom_pressure = 2
    point_file = jn30.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pgas
    unit_weight = '0 0 0'
    character = -1E12
    fully_upwind = true
  [../]
[]



[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn31
  exodus = false
[]

modules/richards/test/tests/sinks/s03.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.5
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[AuxVariables]
  [./seff]
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 2
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((mi-lfout-rfout-mf)/2/(mi+mf))
    vars = 'mi mf lfout rfout'
    vals = 'mass_init mass_fin left_flux_out right_flux_out'
  [../]
[]

[Postprocessors]
  [./mass_init]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]
  [./mass_fin]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]
  [./left_flux_out]
    type = RichardsPiecewiseLinearSinkFlux
    boundary = left
    variable = pressure
    pressures = '-1 1'
    bare_fluxes = '1E2 2E2'
    use_mobility = true
    use_relperm = true
  [../]
  [./right_flux_out]
    type = RichardsPiecewiseLinearSinkFlux
    boundary = right
    variable = pressure
    pressures = '-1 1'
    bare_fluxes = '1E2 2E2'
    use_mobility = true
    use_relperm = true
  [../]
  [./p0]
    type = PointValue
    point = '0 0 0'
    variable = pressure
  [../]
  [./s0]
    type = PointValue
    point = '0 0 0'
    variable = seff
  [../]
  [./mass_bal]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = left
    pressures = '-1 1'
    bare_fluxes = '1E2 2E2'
    variable = pressure
    use_mobility = true
    use_relperm = true
  [../]
  [./right_flux]
    type = RichardsPiecewiseLinearSink
    boundary = right
    pressures = '-1 1'
    bare_fluxes = '1E2 2E2'
    variable = pressure
    use_mobility = true
    use_relperm = true
  [../]
[]

[Kernels]
  active = 'richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
[]

[AuxKernels]
  [./seff_auxk]
    type = RichardsSeffAux
    variable = seff
    seff_UO = SeffVG
    pressure_vars = 'pressure'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 2.1E-5 2.2E-5  2.1E-5 0.1E-5 3.3E-5  2.2E-5 3.3E-5 2E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 2E-3
  end_time = 0.2
[]

[Outputs]
  file_base = s03
  csv = true
  execute_on = timestep_end
[]

framework/contrib/hit/test/output.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function has a constant value,
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# The two models produce very similar results.  There are slight
# differences due to the large deformation treatment.

[Mesh]
  file = 'blocks.e'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [left]
    type = FunctionDirichletBC
    variable = disp_x
    function = 0.02*t
    boundary = 3
  []
  [back]
    type = FunctionDirichletBC
    variable = disp_z
    function = 0.01*t
    boundary = 1
  []
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./mean_alpha]
    type = Elastic
    block = 1
    youngs_modulus = 1e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion_function = cte_func_mean
    stress_free_temperature = 0.0
    thermal_expansion_reference_temperature = 0.5
    thermal_expansion_function_type = mean
  [../]

  [./inst_alpha]
    type = Elastic
    block = 2
    youngs_modulus = 1e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    thermal_expansion_function_type = instantaneous
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (t - tsf) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 1.0
               2 1.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  file_base = const_alpha_out
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/ad_2D_geometries/2D-RZ_centerline_VLC.i

# Simple test to check for use of AxisymmetricCenterlineAverageValue with
# volumetric_locking_correction activated in a tensor mechanics simulation

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
  volumetric_locking_correction = true
[]

[Problem]
  coord_type = RZ
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    use_automatic_differentiation = true
  [../]
[]

[AuxVariables]
  [./temperature]
    initial_condition = 298.0
  [../]
[]

[BCs]
  [./symmetry_x]
    type = ADDirichletBC
    variable = disp_r
    value = 0
    boundary = left
  [../]
  [./roller_z]
    type = ADDirichletBC
    variable = disp_z
    value = 0
    boundary = bottom
  [../]
  [./top_load]
    type = ADFunctionDirichletBC
    variable = disp_z
    function = -0.01*t
    boundary = top
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.3
  [../]
  [./_elastic_strain]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-6
  l_max_its = 50

  start_time = 0.0
  end_time = 0.3
  dt = 0.1
[]

[Postprocessors]
  [./center_temperature]
    type = AxisymmetricCenterlineAverageValue
    variable = temperature
    boundary = left
  [../]
[]

[Outputs]
  csv = true
  perf_graph = true
[]

modules/combined/doc/richards/user/excav/ex01.i

###########################################
#                                         #
#   THIS EXAMPLE CONTAINS AN EXCAVATION   #
#                                         #
###########################################


# Easiest way of figuring out what's happening:
# Run this example, load into paraview, take
# a slice through (0,0,0) with normal (0,0,1),
# colour by pressure and play the animation.


# This mesh has an interior sideset called excav_bdy
[Mesh]
  type = FileMesh
  file = ex01_input.e
[]



# This is a boundary condition acting on excav_bdy
# All it does is to set the pressure to p_excav=0
# at places on excav_bdy wherever excav_fcn tells it to.
[BCs]
  [./excav_bdy]
    type = RichardsExcav
    boundary = excav_bdy
    p_excav = 0.0
    variable = pressure
    excav_geom_function = excav_fcn
  [../]
[]



[Functions]
# excav_fcn controls where to set pressure=p_excav
# You supply start and end positions and times and
# by a linear interpolation these define the position
# of the coal face at all times
  [./excav_fcn]
    type = RichardsExcavGeom
    start_posn = '0 -500 0'
    start_time = 0
    end_posn = '0 500 0'
    end_time = 3E7
  [../]

# mass_bal_fcn calculates the mass balance
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((mi-fout-mf)/2/(mi+mf))
    vars = 'mi mf fout'
    vals = 'mass_init mass_final flux_out'
  [../]

# initial pressure - unimportant in this example
  [./initial_pressure]
    type = ParsedFunction
    value = -10000*(z-100)
  [../]
[]




# following is needed by postprocessors, kernels, etc
# unimportant in this example
[GlobalParams]
  porepressureNames_UO = PPNames
[]




# following does the calculation of relevant
# masses and mass-flux to the excavation
[Postprocessors]

# note that this is calculated at beginning of timestep
  [./mass_init]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

# note this is calculated at end of timestep
  [./mass_final]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

# this is what calculates the mass flux to the excavation
# it is calculating it for boundary=excav_bdy, and the
# excavation time-dependence is set through the excav_fcn
  [./flux_out]
    type = RichardsExcavFlow
    boundary = excav_bdy
    variable = pressure
    excav_geom_function = excav_fcn
  [../]

# mass_bal just outputs the result to screen
  [./mass_bal]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
  [../]
[]




######################################
#                                    #
#  THE FOLLOWING STUFF IS STANDARD   #
#                                    #
######################################


[UserObjects]
  [./PPNames]
    type = RichardsPorepressureNames
    porepressure_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E+2
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = '1 2 3 4'
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 -10'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 6E6
  dt = 3E6
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = ex01
  exodus = true
  csv = true
[]

modules/porous_flow/examples/tidal/atm_tides_open_hole.i

# A 100m x 10m "slab" of height 100m is subjected to cyclic pressure at its top
# Assumptions:
# the boundaries are impermeable, except the top boundary
# only vertical displacement is allowed
# the atmospheric pressure sets the total stress at the top of the model
# at the slab left-hand side there is a borehole that taps into the base of the slab.
[Mesh]
  [./the_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 10
    ny = 1
    nz = 10
    xmin = 0
    xmax = 100
    ymin = -5
    ymax = 5
    zmin = -100
    zmax = 0
  [../]
  [./bh_back]
    type = ExtraNodesetGenerator
    coord = '0 -5 -100'
    input = the_mesh
    new_boundary = 11
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
  biot_coefficient = 0.6
  multiply_by_density = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
    scaling = 1E11
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '-10000*z'  # this is only approximately correct
  [../]
[]

[Functions]
  [./ini_stress_zz]
    type = ParsedFunction
    value = '(25000 - 0.6*10000)*z' # remember this is effective stress
  [../]
  [./cyclic_porepressure]
    type = ParsedFunction
    value = 'if(t>0,5000 * sin(2 * pi * t / 3600.0 / 24.0),0)'
  [../]
  [./cyclic_porepressure_at_depth]
    type = ParsedFunction
    value = '-10000*z + if(t>0,5000 * sin(2 * pi * t / 3600.0 / 24.0),0)'
  [../]
  [./neg_cyclic_porepressure]
    type = ParsedFunction
    value = '-if(t>0,5000 * sin(2 * pi * t / 3600.0 / 24.0),0)'
  [../]
[]

[BCs]
  # zmin is called 'back'
  # zmax is called 'front'
  # ymin is called 'bottom'
  # ymax is called 'top'
  # xmin is called 'left'
  # xmax is called 'right'
  [./no_x_disp]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'bottom top' # because of 1-element meshing, this fixes u_x=0 everywhere
  [../]
  [./no_y_disp]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top' # because of 1-element meshing, this fixes u_y=0 everywhere
  [../]
  [./no_z_disp_at_bottom]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  [../]
  [./pp]
    type = FunctionDirichletBC
    variable = porepressure
    function = cyclic_porepressure
    boundary = front
  [../]
  [./pp_downhole]
    type = FunctionDirichletBC
    variable = porepressure
    function = cyclic_porepressure_at_depth
    boundary = 11
  [../]
  [./total_stress_at_top]
    type = FunctionNeumannBC
    variable = disp_z
    function = neg_cyclic_porepressure
    boundary = front
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.0
      bulk_modulus = 2E9
      viscosity = 1E-3
      density0 = 1000.0
    [../]
  [../]
[]

[PorousFlowBasicTHM]
  coupling_type = HydroMechanical
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  gravity = '0 0 -10'
  fp = the_simple_fluid
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 10.0E9 # drained bulk modulus
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 0 0  0 0 ini_stress_zz'
    eigenstrain_name = ini_stress
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # only the initial value of this is ever used
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    solid_bulk_compliance = 1E-10
    fluid_bulk_modulus = 2E9
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-14 0 0   0 1E-14 0   0 0 1E-14'
  [../]
  [./density]
    type = GenericConstantMaterial
    prop_names = density
    prop_values = 2500.0
  [../]
[]

[Postprocessors]
  [./p0_0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./p100_0]
    type = PointValue
    outputs = csv
    point = '100 0 0'
    variable = porepressure
  [../]
  [./p0_100]
    type = PointValue
    outputs = csv
    point = '0 0 -100'
    variable = porepressure
  [../]
  [./p100_100]
    type = PointValue
    outputs = csv
    point = '100 0 -100'
    variable = porepressure
  [../]
  [./uz0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = disp_z
  [../]
  [./uz100]
    type = PointValue
    outputs = csv
    point = '100 0 0'
    variable = disp_z
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = -3600
  dt = 3600
  end_time = 172800
  nl_rel_tol = 1E-10
  nl_abs_tol = 1E-5
[]

[Outputs]
  print_linear_residuals = false
  csv = true
[]

modules/combined/test/tests/adaptive_timestepping/adapt_tstep_function_change_restart1_sm.i

# This is a test designed to evaluate the cabability of the
# IterationAdaptiveDT TimeStepper to adjust time step size according to
# a function.  For example, if the power input function for a BISON
# simulation rapidly increases or decreases, the IterationAdaptiveDT
# TimeStepper should take time steps small enough to capture the
# oscillation.

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  order = FIRST
  family = LAGRANGE
  block = 1
[]

[Mesh]
  file = 1hex8_10mm_cube.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./Fiss_Function]
    type = PiecewiseLinear
    x = '0 1e6  2e6  2.001e6 2.002e6'
    y = '0 3e8  3e8  12e8    0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

  [./temp]
    initial_condition = 300.0
  [../]
[]

[AuxVariables]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]

  [./heat_source]
     type = HeatSource
     variable = temp
     value = 1.0
     function = Fiss_Function
  [../]
[]

[AuxKernels]
  [./vonmises_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
[]

[BCs]
 [./bottom_temp]
   type = DirichletBC
   variable = temp
   boundary = 1
   value = 300
 [../]
 [./top_bottom_disp_x]
   type = DirichletBC
   variable = disp_x
   boundary = '1'
   value = 0
 [../]
 [./top_bottom_disp_y]
   type = DirichletBC
   variable = disp_y
   boundary = '1'
   value = 0
 [../]
 [./top_bottom_disp_z]
   type = DirichletBC
   variable = disp_z
   boundary = '1'
   value = 0
 [../]
[]

[Materials]
 [./thermal]
    type = HeatConductionMaterial
    temp = temp
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./elastic]
    type = Elastic
    youngs_modulus = 300e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion = 5e-6
    formulation = Nonlinear3D
    increment_calculation = Eigen
    stress_free_temperature = 300.0
  [../]

  [./density]
    type = Density
    density = 10963.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  verbose = true
  nl_abs_tol = 1e-10
  start_time = 0.0

  num_steps = 65
  end_time = 2.002e6
  [./TimeStepper]
    type = IterationAdaptiveDT
    timestep_limiting_function = Fiss_Function
    max_function_change = 3e7
    dt = 1e6
  [../]
[]

[Postprocessors]
  [./Temperature_of_Block]
    type = ElementAverageValue
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./vonMises]
    type = ElementAverageValue
    variable = vonmises_stress
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 10
  [../]
  [./checkpoint]
    type = Checkpoint
    num_files = 1
  [../]
[]

test/tests/multiapps/restart_multilevel/master2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  ymin = 0
  xmax = 1
  ymax = 1
  nx = 10
  ny = 10
[]

[Functions]
  [./v_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./ufn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = v_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    app_type = MooseTestApp
    type = TransientMultiApp
    input_files = 'sub.i'
    execute_on = timestep_end
    positions = '0 -1 0'
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub_app
    source_variable = u
    variable = v
  [../]
[]

[Problem]
  restart_file_base = master_out_cp/0005
[]

modules/phase_field/examples/kim-kim-suzuki/kks_example_dirichlet.i

#
# KKS simple example in the split form
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  nx = 50
  ny = 2
  nz = 0
  xmin = 0
  xmax = 20
  ymin = 0
  ymax = 0.4
  zmin = 0
  zmax = 0
[]

[AuxVariables]
  [./Fglobal]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Variables]
  # order parameter
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]

  # hydrogen concentration
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]

  # chemical potential
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]

  # Liquid phase solute concentration
  [./cl]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.1
  [../]
  # Solid phase solute concentration
  [./cs]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.9
  [../]
[]

[Functions]
  [./ic_func_eta]
    type = ParsedFunction
    value = 0.5*(1.0-tanh((x)/sqrt(2.0)))
  [../]
  [./ic_func_c]
    type = ParsedFunction
    value = '0.9*(0.5*(1.0-tanh(x/sqrt(2.0))))^3*(6*(0.5*(1.0-tanh(x/sqrt(2.0))))^2-15*(0.5*(1.0-tanh(x/sqrt(2.0))))+10)+0.1*(1-(0.5*(1.0-tanh(x/sqrt(2.0))))^3*(6*(0.5*(1.0-tanh(x/sqrt(2.0))))^2-15*(0.5*(1.0-tanh(x/sqrt(2.0))))+10))'
  [../]
[]

[ICs]
  [./eta]
    variable = eta
    type = FunctionIC
    function = ic_func_eta
  [../]
  [./c]
    variable = c
    type = FunctionIC
    function = ic_func_c
  [../]
[]

[BCs]
  [./left_c]
    type = DirichletBC
    variable = 'c'
    boundary = 'left'
    value = 0.5
  [../]
  [./left_eta]
    type = DirichletBC
    variable = 'eta'
    boundary = 'left'
    value = 0.5
  [../]
[]

[Materials]
  # Free energy of the liquid
  [./fl]
    type = DerivativeParsedMaterial
    f_name = fl
    args = 'cl'
    function = '(0.1-cl)^2'
  [../]

  # Free energy of the solid
  [./fs]
    type = DerivativeParsedMaterial
    f_name = fs
    args = 'cs'
    function = '(0.9-cs)^2'
  [../]

  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'M   L   eps_sq'
    prop_values = '0.7 0.7 1.0  '
  [../]
[]

[Kernels]
  # enforce c = (1-h(eta))*cl + h(eta)*cs
  [./PhaseConc]
    type = KKSPhaseConcentration
    ca       = cl
    variable = cs
    c        = c
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotSolute]
    type = KKSPhaseChemicalPotential
    variable = cl
    cb       = cs
    fa_name  = fl
    fb_name  = fs
  [../]

  #
  # Cahn-Hilliard Equation
  #
  [./CHBulk]
    type = KKSSplitCHCRes
    variable = c
    ca       = cl
    fa_name  = fl
    w        = w
  [../]

  [./dcdt]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./ckernel]
    type = SplitCHWRes
    mob_name = M
    variable = w
  [../]

  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = fl
    fb_name  = fs
    w        = 1.0
    args = 'cl cs'
  [../]
  [./ACBulkC]
    type = KKSACBulkC
    variable = eta
    ca       = cl
    cb       = cs
    fa_name  = fl
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = eps_sq
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[AuxKernels]
  [./GlobalFreeEnergy]
    variable = Fglobal
    type = KKSGlobalFreeEnergy
    fa_name = fl
    fb_name = fs
    w = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type'
  petsc_options_value = 'asm      ilu          nonzero'

  l_max_its = 100
  nl_max_its = 100
  nl_abs_tol = 1e-10

  end_time = 800
  dt = 4.0
[]

#
# Precondition using handcoded off-diagonal terms
#
[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./dofs]
    type = NumDOFs
  [../]
  [./integral]
    type = ElementL2Error
    variable = eta
    function = ic_func_eta
  [../]
[]

[Outputs]
  exodus = true
  console = true
  gnuplot = true
[]

modules/tensor_mechanics/test/tests/ad_elastic/rspherical_small_elastic.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 5
[]

[Problem]
  coord_type = RSPHERICAL
[]

[GlobalParams]
  displacements = 'disp_r'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = ADStressDivergenceRSphericalTensors
    component = 0
    variable = disp_r
  [../]
[]

[BCs]
  [./center]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeRSphericalSmallStrain
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

test/tests/userobjects/layered_average/block_restricted.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    nx = 10
    ny = 10
    dim = 2
  []
  [middle]
    input = gen
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    top_right = '0.6 0.6 0'
    bottom_left = '0.4 0.4 0'
  []
[]
[Variables]
  [u]
  []
[]

[AuxVariables]
  [master_app_var]
    order = CONSTANT
    family = MONOMIAL
    block = '1'
  []
[]

[AuxKernels]
  [layered_aux]
    type = SpatialUserObjectAux
    variable = master_app_var
    execute_on = 'timestep_end'
    user_object = master_uo
    block = '1'
  []
[]

[UserObjects]
  [master_uo]
    type = LayeredAverage
    direction = x
    variable = 'u'
    block = '1'
    # Note: 'bounds' or 'num_layers' are provided as CLI args
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = 'left'
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 100
  []
[]

[Executioner]
  type = Transient
  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-10
  petsc_options_iname = '-pc_type -pc_hypre_type'
  num_steps = 1
  petsc_options_value = 'hypre boomeramg'
  l_tol = 1e-8
[]

[Postprocessors]
  [u_avg]
    type = ElementAverageValue
    variable = 'u'
    execute_on = 'initial timestep_end'
  []
  [final_avg]
    type = ElementAverageValue
    variable = 'master_app_var'
    execute_on = 'initial timestep_end'
    block = '1'
  []
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mean_cap_TC/random01.i

# apply many random large deformations, checking that the algorithm returns correctly to
# the yield surface each time.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./max_yield_fcn]
    type = ElementExtremeValue
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console'
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'max_yield_fcn'
  [../]
[]

[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningConstant
    value = -1.5
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
    use_custom_returnMap = false
    use_custom_cto = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    max_NR_iterations = 2
    ep_plastic_tolerance = 1E-6
    plastic_models = cap
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random01
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/xfem/test/tests/pressure_bc/edge_2d_pressure.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = False
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 9
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.0 0.5 0.5 0.5'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    generate_output = 'stress_xx stress_yy'
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1.0 2.0'
    y = '0 500 1000'
  [../]
[]

[BCs]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    variable = disp_x
    value = 0.0
  [../]
[]

[DiracKernels]
  [./pressure_x]
    type = XFEMPressure
    variable = disp_x
    component = 0
    function = pressure
  [../]

  [./pressure_y]
    type = XFEMPressure
    variable = disp_y
    component = 1
    function = pressure
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1
  end_time = 2
[]

[Outputs]
  file_base = edge_2d_pressure_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/jacobian/line_sink01.i

# PorousFlowPeacemanBorehole with 2-phase, 3-components, with enthalpy, internal_energy, and thermal_conductivity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph0_sp1]
  [../]
  [./massfrac_ph1_sp0]
  [../]
  [./massfrac_ph1_sp1]
  [../]
  [./temp]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp ppwater ppgas massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
  [./dummy_outflow0]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow1]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow2]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow3]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow4]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow5]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow6]
    type = PorousFlowSumQuantity
  [../]
  [./dummy_outflow7]
    type = PorousFlowSumQuantity
  [../]
[]

[ICs]
  [./temp]
    type = RandomIC
    variable = temp
    min = 1
    max = 2
  [../]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp1]
    type = RandomIC
    variable = massfrac_ph0_sp1
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp1]
    type = RandomIC
    variable = massfrac_ph1_sp1
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./dummy_temp]
    type = TimeDerivative
    variable = temp
  [../]
  [./dummy_ppwater]
    type = TimeDerivative
    variable = ppwater
  [../]
  [./dummy_ppgas]
    type = TimeDerivative
    variable = ppgas
  [../]
  [./dummy_m00]
    type = TimeDerivative
    variable = massfrac_ph0_sp0
  [../]
  [./dummy_m01]
    type = TimeDerivative
    variable = massfrac_ph0_sp1
  [../]
  [./dummy_m10]
    type = TimeDerivative
    variable = massfrac_ph1_sp0
  [../]
  [./dummy_m11]
    type = TimeDerivative
    variable = massfrac_ph1_sp1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
      cv = 1.1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1.4
      cv = 1.8
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '0.1 0.02 0.03 0.02 0.0 0.01 0.03 0.01 0.3'
  [../]
[]

[DiracKernels]
  [./dirac0]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 0
    variable = ppwater
    point_file = one_point.bh
    line_length = 1
    SumQuantityUO = dummy_outflow0
    character = 1
    bottom_p_or_t = -10
    unit_weight = '1 2 3'
    re_constant = 0.123
  [../]
  [./dirac1]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 1
    variable = ppgas
    line_length = 1
    line_direction = '-1 -1 -1'
    use_relative_permeability = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow1
    character = -0.5
    bottom_p_or_t = 10
    unit_weight = '1 2 -3'
    re_constant = 0.3
  [../]
  [./dirac2]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 0
    variable = massfrac_ph0_sp0
    line_length = 1.3
    line_direction = '1 0 1'
    use_mobility = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow2
    character = 0.6
    bottom_p_or_t = -4
    unit_weight = '-1 -2 -3'
    re_constant = 0.4
  [../]
  [./dirac3]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 0
    variable = massfrac_ph0_sp1
    line_length = 1.3
    line_direction = '1 1 1'
    use_enthalpy = true
    mass_fraction_component = 0
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow3
    character = -1
    bottom_p_or_t = 3
    unit_weight = '0.1 0.2 0.3'
    re_constant = 0.5
  [../]
  [./dirac4]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 1
    variable = massfrac_ph1_sp0
    function_of = temperature
    line_length = 0.9
    line_direction = '1 1 1'
    mass_fraction_component = 1
    use_internal_energy = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow4
    character = 1.1
    bottom_p_or_t = -7
    unit_weight = '-1 2 3'
    re_constant = 0.6
  [../]
  [./dirac5]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 1
    variable = temp
    line_length = 0.9
    function_of = temperature
    line_direction = '1 2 3'
    mass_fraction_component = 2
    use_internal_energy = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow5
    character = 0.9
    bottom_p_or_t = -8
    unit_weight = '1 2 1'
    re_constant = 0.7
  [../]
  [./dirac6]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 0
    variable = ppwater
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow6
    character = 0
    bottom_p_or_t = 10
    unit_weight = '0.0 0.0 0.0'
  [../]
  [./dirac7]
    type = PorousFlowPeacemanBorehole
    fluid_phase = 1
    variable = massfrac_ph0_sp0
    use_mobility = true
    mass_fraction_component = 1
    use_relative_permeability = true
    use_internal_energy = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow7
    character = -1
    bottom_p_or_t = 10
    unit_weight = '0.1 0.2 0.3'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  file_base = line_sink01
[]

modules/solid_mechanics/test/tests/check_error/pressure_component_sm.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

  [./fred]
    type = Pressure
    boundary = 4
    component = 123456789
    variable = disp_x
  [../]
[]

[Materials]
  [./goo]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    bulk_modulus = 1e6
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/tensor_mechanics/test/tests/tensile/planar1.i

# checking for small deformation
# A single element is stretched by 1E-6m in z direction, and by small amounts in x and y directions
# stress_zz = Youngs Modulus*Strain = 2E6*1E-6 = 2 Pa
# tensile_strength is set to 1Pa
# Then the final stress should return to the yeild surface and the maximum principal stress value should be 1pa, and value of plastic strain should be 0.5E-6

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.2E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.0E-6*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./hard]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tens]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = hard
    shift = 1E-6
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    plastic_models = tens
    debug_fspb = crash
    debug_jac_at_stress = '1 2 3 2 -4 -5 3 -5 10'
    debug_jac_at_pm = '0.1 0.2 0.3'
    debug_jac_at_intnl = 1E-6
    debug_stress_change = 1E-6
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar1
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/multiapps/picard/picard_adaptive_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10

  [./TimeStepper]
    type = IterationAdaptiveDT
    cutback_factor = 0.4
    growth_factor = 1.2
    optimal_iterations = 6
    dt = 0.1
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/line_material_rank_two_sampler/rank_two_scalar_sampler.i

[GlobalParams]
  displacements = 'x_disp y_disp z_disp'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
  elem_type = HEX
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e-6
  [../]
[]

[Variables]
  [./x_disp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./y_disp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./z_disp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
 [../]
 [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
 [../]
[]

[AuxKernels]
  [./vonmises]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = VonMisesStress
  [../]
[]

[VectorPostprocessors]
  [./vonmises]
    type = LineMaterialRankTwoScalarSampler
    start = '0.1667 0.4 0.45'
    end   = '0.8333 0.6 0.55'
    property = stress
    scalar_type = VonMisesStress
    sort_by = id
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./front]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = 5
    function = rampConstant
  [../]
  [./back_x]
    type = DirichletBC
    variable = x_disp
    boundary = 0
    value = 0.0
  [../]
  [./back_y]
    type = DirichletBC
    variable = y_disp
    boundary = 0
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = z_disp
    boundary = 0
    value = 0.0
  [../]
[]

[Materials]
  [./elast_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = .3
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK

  l_max_its = 100

  start_time = 0.0
  num_steps = 99999
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  file_base = rank_two_scalar_sampler_out
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/initial_conditions/polycrystalcircles_fromfile.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 56
  nz = 0
  xmin = 0
  xmax = 200
  ymin = 0
  ymax = 112
  zmin = 0
  zmax = 0
[]

[GlobalParams]
  op_num = 6
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./circle_IC]
    type = PolycrystalCircles
    file_name = 'circles.txt'
    read_from_file = true
    execute_on = 'initial'
    threshold = 0.2
    connecting_threshold = 0.08
    int_width = 8
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = circle_IC
    [../]
  [../]
[]

[Kernels]
  [./dt_gr0]
    type = TimeDerivative
    variable = gr0
  [../]
  [./dt_gr1]
    type = TimeDerivative
    variable = gr1
  [../]
  [./dt_gr2]
    type = TimeDerivative
    variable = gr2
  [../]
  [./dt_gr3]
    type = TimeDerivative
    variable = gr3
  [../]
  [./dt_gr4]
    type = TimeDerivative
    variable = gr4
  [../]
  [./dt_gr5]
    type = TimeDerivative
    variable = gr5
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  num_steps = 0
[]

[Outputs]
  exodus = true
  csv = false
[]

modules/porous_flow/examples/tutorial/10.i

# Unsaturated Darcy-Richards flow without using an Action
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    input = annular
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = pp
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1E-6
    m = 0.6
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
[]

[Kernels]
  [./time_derivative]
    type = PorousFlowMassTimeDerivative
    variable = pp
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = pp
    gravity = '0 0 0'
  [../]
[]

[AuxVariables]
  [./sat]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./saturation]
    type = PorousFlowPropertyAux
    variable = sat
    property = saturation
  [../]
[]


[BCs]
  [./production]
    type = PorousFlowSink
    variable = pp
    fluid_phase = 0
    flux_function = 1E-2
    use_relperm = true
    boundary = injection_area
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      viscosity = 1.0E-3
      density0 = 1000.0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1E-14 0 0   0 1E-14 0   0 0 1E-14'
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityConst
    block = caps
    permeability = '1E-15 0 0   0 1E-15 0   0 0 1E-16'
  [../]
  [./saturation_calculator]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 293
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = the_simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    s_res = 0.1
    sum_s_res = 0.1
    phase = 0
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E5
  nl_abs_tol = 1E-7
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/uo_egs/relperm.i

# Outputs a relative permeability curve into an exodus file
# and into a CSV file.
# In the exodus file, the relperm will be a function of "x", and
# this "x" is actually effective saturation.
# In the CSV file you will find the relperm at the "x" point
# specified by you below.
#
# You may specify:
#  - the "type" of relative permeability in the UserObjects block
#  - the parameters of this relative permeability curve in the UserObjects block
#  - the "x" point (which is effective saturation) that you want to extract
#       the relative permeability at, if you want a value at a particular point


[UserObjects]
  [./relperm]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
[]

[Postprocessors]
  [./point_val]
    type = PointValue
    execute_on = timestep_begin
    point = '0.5 0 0'
    variable = relperm
  [../]
[]


############################
# You should not need to change any of the stuff below
############################

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = x
  [../]
[]

[AuxVariables]
  [./relperm]
  [../]
[]

[AuxKernels]
  [./relperm_AuxK]
    type = RichardsRelPermAux
    variable = relperm
    relperm_UO = relperm
    execute_on = timestep_begin
    seff_var = u
  [../]
[]

[Kernels]
  [./dummy]
    type = Diffusion
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 0
[]

[Outputs]
  file_base = relperm
  [./csv]
    type = CSV
  [../]
  [./exodus]
    type = Exodus
    hide = u
  [../]
[]

test/tests/auxkernels/solution_aux/solution_aux_exodus_interp_direct.i

[Mesh]
  type = FileMesh
  file = cubesource.e
  # The SolutionUserObject uses the copy_nodal_solution() capability
  # of the Exodus reader, and therefore won't work if the initial mesh
  # has been renumbered (it will be reunumbered if you are running with
  # DistributedMesh in parallel).  Hence, we restrict this test to run with
  # ReplicatedMesh only.
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./nn]
    type = SolutionAux
    variable = nn
    solution = soln
    direct = true
    from_variable = source_nodal
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = cubesource.e
    system_variables = source_nodal
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'
  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 50
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/multiapps/transient_multiapp/dt_from_master_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1 # This will be constrained by the master solve

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/gravity/gravity.i

# Gravity Test
#
# This test is designed to exercise the gravity body force kernel.
#
# The mesh for this problem is a rectangular bar 10 units by 1 unit
#   by 1 unit.
#
# The boundary conditions for this problem are as follows.  The
#   displacement is zero on each of side that faces a negative
#   coordinate direction.  The acceleration of gravity is 20.
#
# The material has a Young's modulus of 1e6 and a density of 2.
#
# The analytic solution for the displacement along the bar is:
#
# u(x) = -b*x^2/(2*E)+b*L*x/E
#
# The displacement at x=L is b*L^2/(2*E) = 2*20*10*10/(2*1e6) = 0.002.
#
# The analytic solution for the stress along the bar assuming linear
#   elasticity is:
#
# S(x) = b*(L-x)
#
# The stress at x=0 is b*L = 2*20*10 = 400.
#
# Note:  The simulation does not measure stress at x=0.  The stress
#   is reported at element centers.  The element closest to x=0 sits
#   at x = 1/4 and has a stress of 390.  This matches the linear
#   stress distribution that is expected.  The same situation applies
#   at x = L where the stress is zero analytically.  The nearest
#   element is at x=9.75 where the stress is 10.
#
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = gravity_test.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Modules/TensorMechanics/Master/All]
  volumetric_locking_correction = true
  strain = FINITE
  add_variables = true
  generate_output = 'stress_xx'
[]

[Kernels]
  [./gravity]
    type = Gravity
    variable = disp_x
    value = 20
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 5
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    bulk_modulus = 0.333333333333333e6
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./density]
    type = Density
    block = 1
    density = 2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  file_base = gravity_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_2/cyl2_template2_sm.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[Mesh]
  file = cyl2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/combined/test/tests/adaptive_timestepping/adapt_tstep_function_change_restart1.i

# This is a test designed to evaluate the cabability of the
# IterationAdaptiveDT TimeStepper to adjust time step size according to
# a function.  For example, if the power input function for a BISON
# simulation rapidly increases or decreases, the IterationAdaptiveDT
# TimeStepper should take time steps small enough to capture the
# oscillation.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  block = 1
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = 1hex8_10mm_cube.e
[]

[Functions]
  [./Fiss_Function]
    type = PiecewiseLinear
    x = '0 1e6  2e6  2.001e6 2.002e6'
    y = '0 3e8  3e8  12e8    0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

  [./temp]
    initial_condition = 300.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    volumetric_locking_correction = true
    eigenstrain_names = thermal_expansion
    decomposition_method = EigenSolution
    add_variables  = true
    generate_output = 'vonmises_stress'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]

  [./heat_source]
     type = HeatSource
     variable = temp
     value = 1.0
     function = Fiss_Function
  [../]
[]

[BCs]
 [./bottom_temp]
   type = DirichletBC
   variable = temp
   boundary = 1
   value = 300
 [../]
 [./top_bottom_disp_x]
   type = DirichletBC
   variable = disp_x
   boundary = '1'
   value = 0
 [../]
 [./top_bottom_disp_y]
   type = DirichletBC
   variable = disp_y
   boundary = '1'
   value = 0
 [../]
 [./top_bottom_disp_z]
   type = DirichletBC
   variable = disp_z
   boundary = '1'
   value = 0
 [../]
[]

[Materials]
 [./thermal]
    type = HeatConductionMaterial
    temp = temp
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 300e6
    poissons_ratio = .3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 5e-6
    stress_free_temperature = 300.0
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]

  [./density]
    type = Density
    density = 10963.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  verbose = true
  nl_abs_tol = 1e-10
  start_time = 0.0

  num_steps = 65
  end_time = 2.002e6
  [./TimeStepper]
    type = IterationAdaptiveDT
    timestep_limiting_function = Fiss_Function
    max_function_change = 3e7
    dt = 1e6
  [../]
[]

[Postprocessors]
  [./Temperature_of_Block]
    type = ElementAverageValue
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./vonMises]
    type = ElementAverageValue
    variable = vonmises_stress
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 10
  [../]
  [./checkpoint]
    type = Checkpoint
    num_files = 1
  [../]
[]

modules/porous_flow/test/tests/chemistry/except14.i

# Exception test.
# Incorrect number of initial concentrations

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./ini_conc_0]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    reactions = '1 1'
    specific_reactive_surface_area = 1.0
    kinetic_rate_constant = 1.0e-8
    activation_energy = 1.5e4
    molar_volume = 1
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = 'ini_conc_0 ini_conc_0'
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/planar3.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.25E-6*y*sin(t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 0.9
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 0.1
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    yield_function_tolerance = 1E-8
    shift = 1E-8
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    deactivation_scheme = safe
    max_NR_iterations = 3
    min_stepsize = 1
    max_stepsize_for_dumb = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 5 2 5 11 -1 2 -1 12'
    debug_jac_at_pm = '1 1 1 1 1 1'
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6 1E-6 1E-6 1E-6 1E-6'
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/solid_mechanics/test/tests/test_jacobian/jacobian_test_RZ.i

# This test is designed to test the jacobian for a single
# element with volumetric locking correction.
# This test uses axisymmetric small strain formulations.

# To test the jacobian obtained from finite strain axisymmetric formulation, add
# formulation = NonlinearRZ in the materials block.

# The mesh contains one element whose x or r displacement is 1 at
# the left surface (x=0) and 0 at the right surface (x=1).

# Result: The hand coded jacobian matches well with the finite
# difference jacobian with a error norm of 1.8e-16 for the axisymmetric
# small strain formulation.

# For the finite strain formulation, the error norm is in the order of 1e-5.


[Problem]
  coord_type = RZ
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[Variables]
  [./x_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./y_disp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = x_disp
    disp_z = y_disp
  [../]
[]

[BCs]

  [./left]
    type = DirichletBC
    variable = x_disp
    boundary = left
    value = 1.0
  [../]

  [./right]
    type = DirichletBC
    variable = x_disp
    boundary = right
    value = 0.0
  [../]

[]

[Materials]
  [./elastic]
    type = Elastic
    block = 0
    disp_r = x_disp
    disp_z = y_disp
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient #Transient

  solve_type = NEWTON
  petsc_options = '-snes_check_jacobian -snes_check_jacobian_view'

  l_max_its = 100
  nl_abs_tol = 1e-4
  nl_rel_tol = 1e-9
  l_tol = 1e-8
  start_time = 0.0
  num_steps = 1
  dt = 0.005
  dtmin = 0.005
  end_time = 0.005
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto06.i

# checking jacobian for 3-plane linear plasticity using SimpleTester.
#
# This is like the test multi/three_surface05.i
# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# trial stress_yy = 1 and stress_zz = 1
#
# Then SimpleTester0 and SimpleTester2 should activate and the algorithm will return to
# the corner stress_yy=0.5, stress_zz=1
# However, this will mean internal0 < 0, so SimpleTester0 will be deactivated and
# then the algorithm will return to
# stress_yy=0.7, stress_zz=0.8
# internal0 should be 0.0, and internal2 should be 0.3E-6


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 1 0  0 0 1.1'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    tangent_operator = linear
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/peridynamics/test/tests/simple_tests/2D_regularD_constH_BPD.i

# Test for bond-based peridynamic formulation
# for regular grid from generated mesh with const bond constants

# Square plate with Dirichlet boundary conditions applied
# at the left, top and bottom edges

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1002
    value = 0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1000
    function = '-0.001*t'
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = BOND
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.33
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialBPD
  [../]
[]

[Functions]
  [./disp_x_anal]
    type = PiecewiseLinear
    axis = x
    x = '0 1'
    y = '0 -0.00033'
  [../]
  [./disp_y_anal]
    type = PiecewiseLinear
    axis = y
    x = '0 1'
    y = '-0.001 0'
  [../]
[]

[Postprocessors]
  [./anal_disp_L2]
    type = NodalFunctionsL2NormPD
    functions = 'disp_x_anal disp_y_anal'
  [../]
  [./disp_diff_L2]
    type = NodalDisplacementDifferenceL2NormPD
    analytic_functions = 'disp_x_anal disp_y_anal'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  end_time = 1
[]

[Outputs]
  file_base = 2D_regularD_constH_BPD
  exodus = true
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test4ns.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test4ns_out
  exodus = true
[]

modules/combined/test/tests/beam_eigenstrain_transfer/subapp2_uo_transfer.i

# This test involves only thermal expansion strains on a 2x2x2 cube of approximate
# steel material.  An initial temperature of 25 degrees C is given for the material,
# and an auxkernel is used to calculate the temperature in the entire cube to
# raise the temperature each time step.  After the first timestep,in which the
# temperature jumps, the temperature increases by 6.25C each timestep.
# The thermal strain increment should therefore be
#     6.25 C * 1.3e-5 1/C = 8.125e-5 m/m.

# This test is also designed to be used to identify problems with restart files

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 5
  xmin = 0.0
  xmax = 0.5
  ymin = 0.0
  ymax = 0.150080
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./temp]
  [../]
  [./axial_strain]
    order = FIRST
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t*(1000.0)+300.0
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = SMALL
        incremental = true
        add_variables = true
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
  [../]
  [./axial_strain]
    type = RankTwoAux
    variable = axial_strain
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 298
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 0.075
  dt = 0.0125
  dtmin = 0.0001
[]

[Outputs]
  csv = true
  exodus = true
[]

[VectorPostprocessors]
  [./axial_str]
    type = LineValueSampler
    start_point = '0.5 0.0 0.0'
    end_point = '0.5 0.150080 0.0'
    variable = axial_strain
    num_points = 11
    sort_by = 'id'
  [../]
[]

[Postprocessors]
  [./end_disp]
    type = PointValue
    variable = disp_y
    point = '0.5 0.150080 0.0'
  [../]
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/frictionless_penalty_dirac.i

# This is a dirac (contact formulation) version of frictionless_penalty.i
[Mesh]
  file = blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e7
    poissons_ratio = 0.3
  [../]
  [./right]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = frictionless
    formulation = penalty
    penalty = 1e+7
    system = diracKernel
  [../]
[]

test/tests/adaptivity/cycles_per_step/cycles_per_step.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  initial_steps = 2
  cycles_per_step = 2
  marker = marker
  initial_marker = marker
  max_h_level = 2
  [Indicators/indicator]
    type = GradientJumpIndicator
    variable = u
  []
  [Markers/marker]
    type = ErrorFractionMarker
    indicator = indicator
    coarsen = 0.1
    refine = 0.7
  []
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/thermal_expansion/constant_expansion_coeff_restart.i

# This test involves only thermal expansion strains on a 2x2x2 cube of approximate
# steel material.  An initial temperature of 25 degrees C is given for the material,
# and an auxkernel is used to calculate the temperature in the entire cube to
# raise the temperature each time step.  After the first timestep,in which the
# temperature jumps, the temperature increases by 6.25C each timestep.
# The thermal strain increment should therefore be
#     6.25 C * 1.3e-5 1/C = 8.125e-5 m/m.

# This test is also designed to be used to identify problems with restart files

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[Problem]
  restart_file_base =  constant_expansion_coeff_out_cp/LATEST
  force_restart = true
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t*(500.0)+300.0
  [../]
[]

[Modules]
    [TensorMechanics]
        [Master]
            [./all]
                strain = SMALL
                incremental = true
                add_variables = true
                eigenstrain_names = eigenstrain
                generate_output = 'strain_xx strain_yy strain_zz'
            [../]
        [../]
    [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
    use_displaced_mesh = false
  [../]
[]

[BCs]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 298
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  end_time = 0.1
  dt = 0.0125
  dtmin = 0.0001
[]

[Outputs]
  csv = true
  exodus = true
  checkpoint = true
[]

[Postprocessors]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]
  [./strain_zz]
    type = ElementAverageValue
    variable = strain_zz
  [../]
  [./temperature]
    type = AverageNodalVariableValue
    variable = temp
  [../]
[]

modules/phase_field/test/tests/grain_tracker_test/grain_tracker_remapping_test.i

# This simulation predicts GB migration of a 2D copper polycrystal with 100 grains represented with 18 order parameters
# Mesh adaptivity and time step adaptivity are used
# An AuxVariable is used to calculate the grain boundary locations
# Postprocessors are used to record time step and the number of grains

[Mesh]
  # Mesh block.  Meshes can be read in or automatically generated
  type = GeneratedMesh
  dim = 2 # Problem dimension
  nx = 12 # Number of elements in the x-direction
  ny = 12 # Number of elements in the y-direction
  xmax = 1000 # maximum x-coordinate of the mesh
  ymax = 1000 # maximum y-coordinate of the mesh
  elem_type = QUAD4 # Type of elements used in the mesh
  uniform_refine = 1 # Initial uniform refinement of the mesh
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = 8 # Number of order parameters used
  var_name_base = gr # Base name of grains
  order = CONSTANT
  family = MONOMIAL
[]

[Variables]
  # Variable block, where all variables in the simulation are declared
  [./PolycrystalVariables]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    grain_num = 12 # Number of grains
    coloring_algorithm = jp
    rand_seed = 10
    output_adjacency_matrix = true
  [../]
  [./grain_tracker]
    type = GrainTracker
    threshold = 0.2
    verbosity_level = 1
    connecting_threshold = 0.08
    flood_entity_type = ELEMENTAL
    compute_halo_maps = true # For displaying HALO fields
    polycrystal_ic_uo = voronoi
    error_on_grain_creation = true
    execute_on = 'initial timestep_end'
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  # Dependent variables
  [./bnds]
    # Variable used to visualize the grain boundaries in the simulation
    order = FIRST
    family = LAGRANGE
  [../]

  [./unique_grains]
  [../]

  [./var_indices]
  [../]

  [./ghost_regions]
  [../]

  [./halos]
  [../]

  [./halo0]
  [../]

  [./halo1]
  [../]

  [./halo2]
  [../]

  [./halo3]
  [../]

  [./halo4]
  [../]

  [./halo5]
  [../]

  [./halo6]
  [../]

  [./halo7]
  [../]

  [./centroids]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./proc_id]
  [../]
[]

[Kernels]
  # Kernel block, where the kernels defining the residual equations are set up.
  [./PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  [../]
[]

[AuxKernels]
  # AuxKernel block, defining the equations used to calculate the auxvars
  [./bnds_aux]
    # AuxKernel that calculates the GB term
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
    execute_on = 'initial timestep_end'
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
    execute_on = 'initial timestep_end'
  [../]
  [./ghosted_entities]
    type = FeatureFloodCountAux
    variable = ghost_regions
    flood_counter = grain_tracker
    field_display = GHOSTED_ENTITIES
    execute_on = 'initial timestep_end'
  [../]
  [./halos]
    type = FeatureFloodCountAux
    variable = halos
    flood_counter = grain_tracker
    field_display = HALOS
    execute_on = 'initial timestep_end'
  [../]
  [./halo0]
    type = FeatureFloodCountAux
    variable = halo0
    map_index = 0
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo1]
    type = FeatureFloodCountAux
    variable = halo1
    map_index = 1
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo2]
    type = FeatureFloodCountAux
    variable = halo2
    map_index = 2
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo3]
    type = FeatureFloodCountAux
    variable = halo3
    map_index = 3
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo4]
    type = FeatureFloodCountAux
    variable = halo4
    map_index = 4
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo5]
    type = FeatureFloodCountAux
    variable = halo5
    map_index = 5
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo6]
    type = FeatureFloodCountAux
    variable = halo6
    map_index = 6
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo7]
    type = FeatureFloodCountAux
    variable = halo7
    map_index = 7
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./centroids]
    type = FeatureFloodCountAux
    variable = centroids
    execute_on = timestep_end
    field_display = CENTROID
    flood_counter = grain_tracker
  [../]
  [./proc_id]
    type = ProcessorIDAux
    variable = proc_id
    execute_on = initial
  [../]
[]

[BCs]
  # Boundary Condition block
[]

[Materials]
  [./CuGrGr]
    # Material properties
    type = GBEvolution
    T = 450 # Constant temperature of the simulation (for mobility calculation)
    wGB = 125 # Width of the diffuse GB
    GBmob0 = 2.5e-6 # m^4(Js) for copper from Schoenfelder1997
    Q = 0.23 # eV for copper from Schoenfelder1997
    GBenergy = 0.708 # J/m^2 from Schoenfelder1997
  [../]
[]

[Postprocessors]
  # Scalar postprocessors
  [./dt]
    # Outputs the current time step
    type = TimestepSize
  [../]
[]

[Executioner]
  # Uses newton iteration to solve the problem.
  type = Transient # Type of executioner, here it is transient with an adaptive time step
  scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 101 ds'
  l_max_its = 30 # Max number of linear iterations
  l_tol = 1e-4 # Relative tolerance for linear solves
  nl_max_its = 40 # Max number of nonlinear iterations
  nl_rel_tol = 1e-10 # Absolute tolerance for nonlienar solves
  start_time = 0.0
  num_steps = 15
  dt = 300
[]

[Problem]
  type = FEProblem
[]

[Outputs]
  csv = true
  exodus = true
  [./perf_graph]
    type = PerfGraphOutput
    level = 2                     # Default is 1
  [../]
[]

modules/tensor_mechanics/test/tests/multi/three_surface12.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 1.5E-6m in y direction and 1.5E-6 in z direction.
# trial stress_yy = .15 and stress_zz = 1.5
#
# Then SimpleTester0 and SimpleTester1 should activate and the algorithm will return to
# stress_zz=1=stress_yy
# internal0 should be 0.5 and internal1 should be 0.5

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1.5E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.5E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface12
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/dynamics/rayleigh_damping/rayleigh_newmark.i

# Test for rayleigh damping implemented using Newmark time integration

# The test is for an 1D bar element of  unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# zeta and eta correspond to the stiffness and mass proportional rayleigh damping
# beta and gamma are Newmark time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel + eta*M*vel + zeta*K*vel + K*disp = P*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + eta*density*vel + zeta*d/dt(Div stress) + Div stress = P
#
# The first two terms on the left are evaluated using the Inertial force kernel
# The next two terms on the left involving zeta are evaluated using the
# DynamicStressDivergenceTensors Kernel
# The residual due to Pressure is evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure becomes constant.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./DynamicTensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    zeta = 0.1
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
    eta=0.1
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
    eta=0.1
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
    eta = 0.1
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 0
    index_j = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = bottom
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
      factor = 1
    [../]
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '210e9 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 2
  dt = 0.1
[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp]
    type = NodalMaxValue
    variable = disp_y
    boundary = bottom
  [../]
  [./vel]
    type = NodalMaxValue
    variable = vel_y
    boundary = bottom
  [../]
  [./accel]
    type = NodalMaxValue
    variable = accel_y
    boundary = bottom
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]

[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/domain_integral_thermal/j_integral_2d_ctefunc.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack2d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*x/504)
  [../]
  [./cte_func]
    type = PiecewiseLinear
    x = '-10 -6 -2 0 2 6 10'
    y = '1.484e-5 1.489e-5 1.494e-5 1.496e-5 1.498e-5 1.502e-5 1.505e-5'
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  temperature = temp
  incremental = true
  eigenstrain_names = thermal_expansion
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
    eigenstrain_names = thermal_expansion
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 400
    value = 0.0
  [../]

  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = 900
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeInstantaneousThermalExpansionFunctionEigenstrain
    block = 1
    thermal_expansion_function = cte_func
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 40

  nl_rel_step_tol= 1e-10
  nl_rel_tol = 1e-10

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  csv = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

modules/heat_conduction/test/tests/parallel_element_pps_test/parallel_element_pps_test.i

[Mesh]
  file = block_map.e
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'heat ie'

  [./heat]
    type = HeatConduction
    variable = u
  [../]

  [./ie]
    type = SpecificHeatConductionTimeDerivative
    variable = u
  [../]
[]

[BCs]
  active = 'bottom top'

  [./bottom]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0.0
  [../]

  [./top]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1.0
  [../]
[]

[Postprocessors]
   active = 'p_1 p_2 p_3 p_all'

  [./p_1]
    type = ElementIntegralVariablePostprocessor
    variable = u
    block = '1'
  [../]

  [./p_2]
    type = ElementIntegralVariablePostprocessor
    variable = u
    block = '2'
  [../]

  [./p_3]
    type = ElementIntegralVariablePostprocessor
    variable = u
    block = '3'
  [../]

  [./p_all]
    type = ElementIntegralVariablePostprocessor
    variable = u
    block = '1 2 3'
  [../]
[]


[Materials]
  [./constant]
    type = GenericConstantMaterial
    block = 1
    prop_names = 'thermal_conductivity specific_heat density'
    prop_values = '1.0 1.0 1.0'
  [../]

  [./constant2]
    type = GenericConstantMaterial
    block = 2
    prop_names = 'thermal_conductivity specific_heat density'
    prop_values = '0.8 0.8 0.8'
  [../]

  [./constant3]
    type = GenericConstantMaterial
    block = 3
    prop_names = 'thermal_conductivity specific_heat density'
    prop_values = '5 5 5'
  [../]
[]


[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



  start_time = 0.0
  num_steps = 5
  dt = .1
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/pull_and_shear.i

# Dynamic problem with plasticity.
# A column of material (not subject to gravity) has the z-displacement
# of its sides fixed, but the centre of its bottom side is pulled
# downwards.  This causes failure in the bottom elements.
#
# The problem utilises damping in the following way.
# The DynamicStressDivergenceTensors forms the residual
# integral  grad(stress) + zeta*grad(stress-dot)
#     = V/L * elasticity * (du/dx + zeta * dv/dx)
# where V is the elemental volume, and L is the length-scale,
# and u is the displacement, and v is the velocity.
# The InertialForce forms the residual
# integral  density * (accel + eta * velocity)
#     = V * density * (a + eta * v)
# where a is the acceleration.
# So, a damped oscillator description with both these
# kernels looks like
# 0 = V * (density * a + density * eta * v + elasticity * zeta * v / L^2 + elasticity / L^2 * u)
# Critical damping is when the coefficient of v is
# 2 * sqrt(density * elasticity / L^2)
# In the case at hand, density=1E4, elasticity~1E10 (Young is 16GPa),
# L~1 to 10 (in the horizontal or vertical direction), so this coefficient ~ 1E7 to 1E6.
# Choosing eta = 1E3 and zeta = 1E-2 gives approximate critical damping.
# If zeta is high then steady-state is achieved very quickly.
#
# In the case of plasticity, the effective stiffness of the elements
# is significantly less.  Therefore, the above parameters give
# overdamping.
#
# This simulation is a nice example of the irreversable and non-uniqueness
# of simulations involving plasticity.  The result depends on the damping
# parameters and the time stepping.
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 10
    ny = 1
    nz = 5
    bias_z = 1.5
    xmin = -10
    xmax = 10
    ymin = -10
    ymax = 10
    zmin = -100
    zmax = 0
  []
  [bottomz_middle]
    type = BoundingBoxNodeSetGenerator
    new_boundary = bottomz_middle
    bottom_left = '-1 -1500 -105'
    top_right = '1 1500 -95'
    input = generated_mesh
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  beta = 0.25 # Newmark time integration
  gamma = 0.5 # Newmark time integration
  eta = 1E3 #0.3E4 # higher values mean more damping via density
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./DynamicTensorMechanics] # zeta*K*vel + K * disp
    zeta = 1E-2 # higher values mean more damping via stiffness
    alpha = 0 # better nonlinear convergence than for alpha>0
  [../]
  [./inertia_x] # M*accel + eta*M*vel
    type = InertialForce
    use_displaced_mesh = false
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
  [../]
  [./inertia_y]
    type = InertialForce
    use_displaced_mesh = false
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
  [../]
  [./inertia_z]
    type = InertialForce
    use_displaced_mesh = false
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
  [../]
[]

[BCs]
  [./no_x2]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_y1]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./no_y2]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.0
  [../]

  [./z_fixed_sides_xmin]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0
  [../]
  [./z_fixed_sides_xmax]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value = 0
  [../]

  [./bottomz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = bottomz_middle
    function = max(-10*t,-10)
  [../]
[]

[AuxVariables]
  [./accel_x]
  [../]
  [./vel_x]
  [../]
  [./accel_y]
  [../]
  [./vel_y]
  [../]
  [./accel_z]
  [../]
  [./vel_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./accel_x] # Calculates and stores acceleration at the end of time step
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    execute_on = timestep_end
  [../]
  [./vel_x] # Calculates and stores velocity at the end of the time step
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    execute_on = timestep_end
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
  [./straint_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xx
    index_i = 0
    index_j = 0
  [../]
  [./straint_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xy
    index_i = 0
    index_j = 1
  [../]
  [./straint_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xz
    index_i = 0
    index_j = 2
  [../]
  [./straint_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yy
    index_i = 1
    index_j = 1
  [../]
  [./straint_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yz
    index_i = 1
    index_j = 2
  [../]
  [./straint_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zz
    index_i = 2
    index_j = 2
  [../]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.166666666667
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 1E80
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '6.4E9 6.4E9'  # young 16MPa, Poisson 0.25
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 1E6
    smoothing_tol = 0.5E6
    yield_function_tol = 1E-2
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = density
    prop_values = 1E4
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -snes_linesearch_monitor'
    petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
    petsc_options_value = ' asm      2              lu            gmres     200'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason'
  line_search = bt
  nl_abs_tol = 1E1
  nl_rel_tol = 1e-5
  l_tol = 1E-10

  l_max_its = 100
  nl_max_its = 100

  num_steps = 8
  dt = 0.1
  type = Transient
[]

[Outputs]
  file_base = pull_and_shear
  exodus = true
  csv = true
[]

test/tests/time_steppers/iteration_adaptive/adapt_tstep_grow_init_dt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmax = 5
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 10
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = -1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  start_time = 0.0
  end_time = 20.0
  n_startup_steps = 2
  dtmax = 6.0
  [./TimeStepper]
    type = IterationAdaptiveDT
    optimal_iterations = 10
    dt = 1.0
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  checkpoint = true
[]

test/tests/mortar/displaced-gap-conductance-2d-non-conforming/gap-conductance.i

[Mesh]
  displacements = 'disp_x disp_y'
  [file]
    type = FileMeshGenerator
    file = nodal_normals_test_offset_nonmatching_gap.e
    # block 1: left
    # block 2: right
  []
  [./master]
    input = file
    type = LowerDBlockFromSidesetGenerator
    sidesets = '2'
    new_block_id = '20'
  [../]
  [./slave]
    input = master
    type = LowerDBlockFromSidesetGenerator
    sidesets = '1'
    new_block_id = '10'
  [../]
[]

[AuxVariables]
  [disp_x]
    block = '1 2'
  []
  [disp_y]
    block = '1 2'
  []
[]

[AuxKernels]
  [function_x]
    type = FunctionAux
    function = '.05 * t'
    variable = 'disp_x'
    block = '2'
  []
  [function_y]
    type = FunctionAux
    function = '.05 * t'
    variable = 'disp_y'
    block = '2'
  []
[]

[Problem]
  kernel_coverage_check = false
[]

[Variables]
  [./T]
    block = '1 2'
  [../]
  [./lambda]
    block = '10'
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = T
    boundary = '5'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = T
    boundary = '8'
    value = 1
  [../]
[]

[Kernels]
  [./conduction]
    type = Diffusion
    variable = T
    block = '1 2'
  [../]
[]

[Debug]
  show_var_residual_norms = 1
[]

[Constraints]
  [./mortar]
    type = GapHeatConductanceTest
    master_boundary = 2
    slave_boundary = 1
    master_subdomain = 20
    slave_subdomain = 10
    variable = lambda
    slave_variable = T
    use_displaced_mesh = true
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  solve_type = NEWTON
  type = Transient
  num_steps = 5
  petsc_options_iname = '-pc_type -snes_linesearch_type'
  petsc_options_value = 'lu       basic'
[]

[Outputs]
  exodus = true
  [dofmap]
    type = DOFMap
    execute_on = 'initial'
  []
[]

modules/phase_field/test/tests/initial_conditions/NestedBoundingBoxIC_3D.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  xmin = 0
  xmax = 40
  ny = 10
  ymin = 0
  ymax = 30
  nz = 10
  zmin = 0
  zmax = 40
[]

[Problem]
  solve = false
[]

[Variables]
  [./c]
  [../]
[]

[ICs]
  [./c]
    type = NestedBoundingBoxIC
    variable = c
    smaller_coordinate_corners = '20 12 20 15 8 15 5 4 8'
    larger_coordinate_corners = '25 16 24 30 20 28 35 25 30'
    inside = '0.2 0.5 0.8'
    outside = 1
    int_width = 3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       ilu            nonzero'
  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-11

  num_steps = 1
  dt = 1e-5
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/planar_hard1.i

# apply uniform stretches in x, y and z directions.
# let mc_cohesion = 10, mc_cohesion_residual = 2, mc_cohesion_rate =
# With cohesion = C, friction_angle = 60deg, tip_smoother = 4, the
# algorithm should return to
# sigma_m = C*Cos(60)/Sin(60)
# This allows checking of the relationship for C

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 10
    value_residual = 2
    rate = 1E4
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    yield_function_tolerance = 1E-5
    use_custom_returnMap = true
    shift = 1E-12
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = mc
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar_hard1
  exodus = false
  [./csv]
    type = CSV
    execute_on = timestep_end
    [../]
[]

test/tests/parser/cli_multiapp_single/dt_from_master_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1 # This will be constrained by the master solve

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/grain_texture/grain_texture_test_2.i

# This simulation predicts GB migration of 8 grains and outputs grain texture information
# Mesh adaptivity is not used so that the VectorPostprocessor's output will be uniform
# Time step adaptivity is used
# An AuxVariable is used to calculate the grain boundary locations

[Mesh]
  # Mesh block.  Meshes can be read in or automatically generated
  type = GeneratedMesh
  dim = 3 # Problem dimension
  nx = 10 # Number of elements in the x-direction
  ny = 10 # Number of elements in the y-direction
  nz = 2 # Number of elements in the z-direction
  xmin = 0 # minimum x-coordinate of the mesh
  xmax = 100 # maximum x-coordinate of the mesh
  ymin = 0 # minimum y-coordinate of the mesh
  ymax = 100 # maximum y-coordinate of the mesh
  zmin = 0 # minimum z-coordinate of the mesh
  zmax = 20 # maximum z-coordinate of the mesh
  elem_type = HEX8 # Type of elements used in the mesh
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = 3 # Number of order parameters used
  var_name_base = gr # Base name of grains
  grain_num = 3 #Number of grains
[]

[Variables]
  # Variable block, where all variables in the simulation are declared
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    coloring_algorithm = bt
  [../]
  [./grain_tracker]
    type = FauxGrainTracker # Note: FauxGrainTracker only used for testing purposes. Use GrainTracker when using GrainTextureVectorPostprocessor.
    flood_entity_type = ELEMENTAL
    outputs = none
  [../]
  [./euler_angle_file]
    type = EulerAngleFileReader
    file_name = grn_3_rand_2D.tex
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  # Dependent variables
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  # Kernel block, where the kernels defining the residual equations are set up.
  [./PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  [../]
[]

[AuxKernels]
  # AuxKernel block, defining the equations used to calculate the auxvars
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    execute_on = timestep_end
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
[]

[Materials]
  [./CuGrGr]
    # Material properties
    type = GBEvolution # Quantitative material properties for copper grain growth.  Dimensions are nm and ns
    block = 0 # Block ID (only one block in this problem)
    GBmob0 = 2.5e-6 #Mobility prefactor for Cu from Schonfelder1997
    GBenergy = 0.708 # GB energy in J/m^2
    Q = 0.23 #Activation energy for grain growth from Schonfelder 1997
    T = 450 # K   #Constant temperature of the simulation (for mobility calculation)
    wGB = 14 # nm    #Width of the diffuse GB
  [../]
[]

[VectorPostprocessors]
  [./textureInfo]
    type = GrainTextureVectorPostprocessor
    unique_grains = unique_grains
    euler_angle_provider = euler_angle_file
    sort_by = id # sort output by elem id
  [../]
[]

[Executioner]
  type = Transient # Type of executioner, here it is transient with an adaptive time step
  scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  l_max_its = 30 # Max number of linear iterations
  l_tol = 1e-4 # Relative tolerance for linear solves
  nl_max_its = 40 # Max number of nonlinear iterations
  nl_abs_tol = 1e-11 # Relative tolerance for nonlinear solves
  nl_rel_tol = 1e-10 # Absolute tolerance for nonlinear solves
  start_time = 0.0
  num_steps = 1
[]

[Outputs]
  execute_on = 'TIMESTEP_END'
  csv = true
[]

modules/tensor_mechanics/test/tests/1D_axisymmetric/axisymm_plane_strain_finite.i

#
# This test checks elastic stress calculations with mechanical and thermal
# strain using finite strain formulation. Young's modulus is 3600, and Poisson's ratio is 0.2.
# The axisymmetric, plane strain 1D mesh is pulled with displacement of 2e-3.
# Thus, the strain is [log(1+1e-3)=9.995e-4, 0, log(1+1e-3)=9.995e-4] (xx, yy, zz). This gives stress of
# [4.9975, 1.999, 4.9975].  After a temperature increase of 100 with alpha of
# 1e-6, the stress becomes [4.3975, 1.399, 4.3975].
#

[GlobalParams]
  displacements = disp_x
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = line.e
[]

[Variables]
  [./disp_x]
  [../]
[]

[AuxVariables]
  [./temp]
    initial_condition = 580.0
  [../]
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '580 580 680'
  [../]
  [./disp_x]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 2e-3'
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./ps]
        planar_formulation = PLANE_STRAIN
        strain = FINITE
        generate_output = 'strain_xx strain_zz stress_xx stress_yy stress_zz'
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    function = temp
    execute_on = 'timestep_begin'
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    boundary = 1
    value = 0
    variable = disp_x
  [../]
  [./disp_x]
    type = FunctionDirichletBC
    boundary = 2
    function = disp_x
    variable = disp_x
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 3600
    poissons_ratio = 0.2
  [../]

  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-6
    temperature = temp
    stress_free_temperature = 580
    eigenstrain_name = eigenstrain
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_max_its = 50
  l_tol = 1e-6
  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  start_time = 0
  end_time = 2
  num_steps = 2
[]

[Outputs]
  exodus = true
  console = true
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_1/cyl1_mu_0_2_pen_sm.i

[Mesh]
  file = cyl1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = cyl1_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = cyl1_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

test/tests/auxkernels/mesh_integer/mesh_integer.i

[Mesh]
  type = MeshGeneratorMesh

  [gmg]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 1
    ymin = 0
    ymax = 1
    nx = 5
    ny = 5
    extra_element_integers = 'material_id'
  []
  [set_material_id0]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    bottom_left = '0 0 0'
    top_right = '0.8 0.6 0'
    block_id = 0
    location = INSIDE
    integer_name = material_id
  []
  [set_material_id1]
    type = SubdomainBoundingBoxGenerator
    input = set_material_id0
    bottom_left = '0 0 0'
    top_right = '0.8 0.6 0'
    block_id = 1
    location = OUTSIDE
    integer_name = material_id
  []
[]

[Variables]
  [u][]
[]

[Kernels]
  [diff]
    type = MatDiffusion
    variable = u
    diffusivity = dc
  []
  [timederivative]
    type = TimeDerivative
    variable = u
  []
  [sourceterm]
    type = BodyForce
    variable = u
    function = 1
  []
[]

[AuxVariables]
  [id]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[AuxKernels]
  [id]
    type = ElementIntegerAux
    variable = id
    integer_names = material_id
  []
[]

[BCs]
  [vacuum]
    type = VacuumBC
    variable = u
    boundary = 'right left top bottom'
 []
[]

[Materials]
  [dc]
    type = ConstantIDMaterial
    prop_name = dc
    prop_values = '1 2'
    id_name = material_id
  []
[]

[Postprocessors]
  [unorm]
    type = ElementL2Norm
    variable = u
  []
[]

[Executioner]
  type = Transient

  end_time = 0.1
  dt = 0.01
  nl_abs_tol = 1.e-15
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/richards/test/tests/rogers_stallybrass_clements/rsc_fu_01.i

# RSC test with high-res time and spatial resolution
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 600
  ny = 1
  xmin = 0
  xmax = 10 # x is the depth variable, called zeta in RSC
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityOil'
  relperm_UO = 'RelPerm RelPerm'
  SUPG_UO = 'SUPGstandard SUPGstandard'
  sat_UO = 'Saturation Saturation'
  seff_UO = 'SeffWater SeffOil'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '3E-3 3E-2 0.05'
    x = '0 1 5'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater poil'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 10
    bulk_mod = 2E9
  [../]
  [./DensityOil]
    type = RichardsDensityConstBulk
    dens0 = 20
    bulk_mod = 2E9
  [../]
  [./SeffWater]
    type = RichardsSeff2waterRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
  [./SeffOil]
    type = RichardsSeff2gasRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
  [./RelPerm]
    type = RichardsRelPermMonomial
    simm = 0
    n = 1
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E-2
  [../]
[]


[Variables]
  [./pwater]
  [../]
  [./poil]
  [../]
[]

[ICs]
  [./water_init]
    type = ConstantIC
    variable = pwater
    value = 0
  [../]
  [./oil_init]
    type = ConstantIC
    variable = poil
    value = 15
  [../]
[]

[Kernels]
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstoil]
    type = RichardsMassChange
    variable = poil
  [../]
  [./richardsfoil]
    type = RichardsFullyUpwindFlux
    variable = poil
  [../]
[]


[AuxVariables]
  [./SWater]
  [../]
  [./SOil]
  [../]
[]


[AuxKernels]
  [./Seff1VGwater_AuxK]
    type = RichardsSeffAux
    variable = SWater
    seff_UO = SeffWater
    pressure_vars = 'pwater poil'
  [../]
  [./Seff1VGoil_AuxK]
    type = RichardsSeffAux
    variable = SOil
    seff_UO = SeffOil
    pressure_vars = 'pwater poil'
  [../]
[]


[BCs]
# we are pumping water into a system that has virtually incompressible fluids, hence the pressures rise enormously.  this adversely affects convergence because of almost-overflows and precision-loss problems.  The fixed things help keep pressures low and so prevent these awful behaviours.   the movement of the saturation front is the same regardless of the fixed things.
  active = 'recharge fixedoil fixedwater'
  [./recharge]
    type = RichardsPiecewiseLinearSink
    variable = pwater
    boundary = 'left'
    pressures = '-1E10 1E10'
    bare_fluxes = '-1 -1'
    use_mobility = false
    use_relperm = false
  [../]
  [./fixedwater]
    type = DirichletBC
    variable = pwater
    boundary = 'right'
    value = 0
  [../]
  [./fixedoil]
    type = DirichletBC
    variable = poil
    boundary = 'right'
    value = 15
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.25
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 2E-3'
    gravity = '0E-0 0 0'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]


[Outputs]
  file_base = rsc_fu_01
  interval = 100000
  execute_on = 'initial timestep_end final'
  exodus = true
[]

modules/tensor_mechanics/test/tests/static_deformations/layered_cosserat_03.i

# apply deformations and observe the moment-stresses
# with
# young = 0.7
# poisson = 0.2
# layer_thickness = 0.1
# joint_normal_stiffness = 0.25
# joint_shear_stiffness = 0.2
# then
# a0000 = 0.730681
# a0011 = 0.18267
# a2222 = 0.0244221
# a0022 = 0.006055
# a0101 = 0.291667
# a66 = 0.018717
# a77 = 0.310383
# b0101 = 0.000534
# b0110 = -0.000107
# and with
# wc_x = x + 2*y + 3*z
# wc_y = -1.1*x - 2.2*y - 3.3*z
# then
# curvature_xy = 2
# curvature_yx = -1.1
# and all others are either zero at (x,y,z)=(0,0,0) or unimportant for layered Cosserat
# so that
# m_xy = b0101*(2) + b0110*(-1.1) = 0.00118
# m_yx = b0110*2 + b0101*(-1.1) = -0.000801
# and all others zero (at (x,y,z)=(0,0,0))
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  # zmin is called back
  # zmax is called front
  # ymin is called bottom
  # ymax is called top
  # xmin is called left
  # xmax is called right
  [./wc_x]
    type = FunctionDirichletBC
    variable = wc_x
    boundary = 'left right'
    function = 'x+2*y+3*z'
  [../]
  [./wc_y]
    type = FunctionDirichletBC
    variable = wc_y
    boundary = 'left right'
    function = '-1.1*x-2.2*y-3.3*z'
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yx]
    type = PointValue
    point = '0 0 0'
    variable = stress_yx
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zx]
    type = PointValue
    point = '0 0 0'
    variable = stress_zx
  [../]
  [./s_zy]
    type = PointValue
    point = '0 0 0'
    variable = stress_zy
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./c_s_xx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xx
  [../]
  [./c_s_xy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xy
  [../]
  [./c_s_xz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xz
  [../]
  [./c_s_yx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yx
  [../]
  [./c_s_yy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yy
  [../]
  [./c_s_yz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yz
  [../]
  [./c_s_zx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zx
  [../]
  [./c_s_zy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zy
  [../]
  [./c_s_zz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zz
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 0.7
    poisson = 0.2
    layer_thickness = 0.1
    joint_normal_stiffness = 0.25
    joint_shear_stiffness = 0.2
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol -sub_pc_factor_shift_type'
    petsc_options_value = 'gmres asm lu 1E-10 1E-14 10 1E-15 1E-10 NONZERO'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = layered_cosserat_03
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_2/brick2_template2_sm.i

[Mesh]
  file = brick2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_x26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_x
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./disp_y26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x7 disp_y7 disp_x26 disp_y26 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+7
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/combined/test/tests/contact_verification/hertz_cyl/half_symm_q8/hertz_cyl_half_1deg_template1.i

[GlobalParams]
  order = SECOND
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = hertz_cyl_half_1deg.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./disp_ramp_vert]
    type = PiecewiseLinear
    x = '0. 1. 3.5'
    y = '0. -0.0020 -0.0020'
  [../]
  [./disp_ramp_horz]
    type = PiecewiseLinear
    x = '0. 1. 3.5'
    y = '0. 0.0 0.0014'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./disp_x639]
    type = NodalVariableValue
    nodeid = 638
    variable = disp_x
  [../]
  [./disp_y639]
    type = NodalVariableValue
    nodeid = 638
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2'
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]
  [./top_y_disp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = disp_ramp_vert
  [../]
  [./top_x_disp]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = disp_ramp_horz
  [../]
[]

[Materials]
  [./stuff1_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e10
    poissons_ratio = 0.0
  [../]
  [./stuff1_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./stuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./stuff2_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff2_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./stuff2_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
  [./stuff3_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '3'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff3_strain]
    type = ComputeFiniteStrain
    block = '3'
  [../]
  [./stuff3_stress]
    type = ComputeFiniteStrainElasticStress
    block = '3'
  [../]
  [./stuff4_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '4'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff4_strain]
    type = ComputeFiniteStrain
    block = '4'
  [../]
  [./stuff4_stress]
    type = ComputeFiniteStrainElasticStress
    block = '4'
  [../]
  [./stuff5_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '5'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff5_strain]
    type = ComputeFiniteStrain
    block = '5'
  [../]
  [./stuff5_stress]
    type = ComputeFiniteStrainElasticStress
    block = '5'
  [../]
  [./stuff6_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '6'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff6_strain]
    type = ComputeFiniteStrain
    block = '6'
  [../]
  [./stuff6_stress]
    type = ComputeFiniteStrainElasticStress
    block = '6'
  [../]
  [./stuff7_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '7'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff7_strain]
    type = ComputeFiniteStrain
    block = '7'
  [../]
  [./stuff7_stress]
    type = ComputeFiniteStrainElasticStress
    block = '7'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-6
  nl_rel_tol = 1e-5
  l_max_its = 100
  nl_max_its = 200

  start_time = 0.0
  end_time = 3.5
  l_tol = 1e-3
  dt = 0.1
  dtmin = 0.1
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '3 4'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '3 4'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'x_disp y_disp cont_press'
    start_time = 0.9
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./chkfile2]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x639 disp_y639 top_react_x top_react_y'
    start_time = 0.9
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./interface]
    master = 2
    slave = 3
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+10
    system = Constraint
  [../]
[]

modules/tensor_mechanics/test/tests/tensile/planar6.i

# A single unit element is stretched by (0.5, 0.4, 0.3)E-6m
# with Lame lambda = 0.6E6 and Lame mu (shear) = 1E6
# stress_xx = 1.72 Pa
# stress_yy = 1.52 Pa
# stress_zz = 1.32 Pa
# tensile_strength is set to 0.5Pa with cubic hardening to 1Pa at intnl=1E-6
#
# The return should be to the tip with, according to mathematica
# sum(plastic_multiplier) = 5.67923989317E-7
# stress_xx = stress_yy = stress_zz = 0.80062961323

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.5E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.4E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.3E-6*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./hard]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.5
    value_residual = 1
    internal_limit = 1E-6
  [../]
  [./tens]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = hard
    shift = 1E-6
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.6E6 1E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    plastic_models = tens
    debug_fspb = none
    debug_jac_at_stress = '1 2 3 2 -4 -5 3 -5 10'
    debug_jac_at_pm = '0.1 0.2 0.3'
    debug_jac_at_intnl = 1E-6
    debug_stress_change = 1E-6
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar6
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/solid_mechanics/test/tests/j_integral_vtest/j_int_surfbreak_ellip_crack_sym_mm.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = ellip_crack_4sym_norad_mm.e
  displacements = 'disp_x disp_y disp_z'
  partitioner = centroid
  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./resid_z]
  [../]
[]


[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.1'
    scale_factor = -689.5 #MPa
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 1001
  crack_direction_method = CurvedCrackFront
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0.0 1.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  radius_inner = '12.5 25.0 37.5'
  radius_outer = '25.0 37.5 50.0'
  intersecting_boundary = '1 2'
  symmetry_plane = 2
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
    save_in_disp_z = resid_z
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 12
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 5
      function = rampConstantUp
    [../]
  [../]
[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 206.8e+3 #MPa
    #youngs_modulus = 30e+6
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


#  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   nl_rel_tol = 1e-11
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]

  [./nl_its]
    type = NumNonlinearIterations
  [../]

  [./lin_its]
    type = NumLinearIterations
  [../]

  [./react_z]
    type = NodalSum
    variable = resid_z
    boundary = 5
  [../]

[]


[Outputs]
  execute_on = 'timestep_end'
  file_base = j_int_surfbreak_ellip_crack_sym_mm_out
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/Nucleation/soft.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = -3
  xmax = 10
  ymin = -3
  ymax = 10
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0
  [../]
[]

[Kernels]
  [./c]
    type = Diffusion
    variable = c
  [../]
  [./dt]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./nucleation]
    type = DiscreteNucleation
    op_names  = c
    op_values = 1
    penalty = 10
    map = map
    outputs = exodus
  [../]
[]

[UserObjects]
  [./inserter]
    type = DiscreteNucleationFromFile
    hold_time = 1
    file = single.csv
  [../]
  [./map]
    type = DiscreteNucleationMap
    radius = 7
    int_width = 6
    inserter = inserter
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 2
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  interval = 2
  exodus = true
  hide = c
[]

modules/porous_flow/test/tests/jacobian/hcs01.i

# apply a half-cubic sink flux and observe the correct behavior
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas massfrac_ph0_sp0 massfrac_ph1_sp0'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./dummy_ppwater]
    type = TimeDerivative
    variable = ppwater
  [../]
  [./dummy_ppgas]
    type = TimeDerivative
    variable = ppgas
  [../]
  [./dummy_m00]
    type = TimeDerivative
    variable = massfrac_ph0_sp0
  [../]
  [./dummy_m10]
    type = TimeDerivative
    variable = massfrac_ph1_sp0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1.4
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
[]

[BCs]
  [./flux_w]
    type = PorousFlowHalfCubicSink
    boundary = 'left'
    center = 0.1
    cutoff = -1.1
    max = 2.2
    variable = ppwater
    mass_fraction_component = 0
    fluid_phase = 0
    use_relperm = true
    use_mobility = true
    flux_function = 'x*y'
  [../]
  [./flux_g]
    type = PorousFlowHalfCubicSink
    boundary = 'top left front'
    center = 0.5
    cutoff = -1.1
    max = -2.2
    mass_fraction_component = 0
    variable = ppgas
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '-x*y'
  [../]
  [./flux_1]
    type = PorousFlowHalfCubicSink
    boundary = 'right'
    center = -0.1
    cutoff = -1.1
    max = 1.2
    mass_fraction_component = 1
    variable = massfrac_ph0_sp0
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '-1.1*x*y'
  [../]
  [./flux_2]
    type = PorousFlowHalfCubicSink
    boundary = 'bottom'
    center = 3.2
    cutoff = -1.1
    max = 1.2
    mass_fraction_component = 1
    variable = massfrac_ph1_sp0
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '0.5*x*y'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 2
[]

[Outputs]
  file_base = hcs01
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/except2.i

# checking for exception error messages
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 1
    mc_edge_smoother = 25
    mc_lode_cutoff = -1.0E-6
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = except2
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/visco/visco_finite_strain.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    variable = stress_xx
    rank_two_tensor = stress
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./strain_xx]
    type = RankTwoAux
    variable = strain_xx
    rank_two_tensor = total_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    variable = creep_strain_xx
    rank_two_tensor = creep_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./axial_load]
    type = NeumannBC
    variable = disp_x
    boundary = right
    value    = 10e6
  [../]
[]

[Materials]
  [./kelvin_voigt]
    type = GeneralizedKelvinVoigtModel
    creep_modulus = '10e9 10e9'
    creep_viscosity = '1 10'
    poisson_ratio = 0.2
    young_modulus = 10e9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'creep'
  [../]
  [./creep]
    type = LinearViscoelasticStressUpdate
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./update]
    type = LinearViscoelasticityManager
    viscoelastic_model = kelvin_voigt
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./creep_strain_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  l_max_its  = 100
  l_tol      = 1e-8
  nl_max_its = 50
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8

  dtmin = 0.01
  end_time = 100
  [./TimeStepper]
    type = LogConstantDT
    first_dt = 0.1
    log_dt = 0.1
  [../]

[]

[Outputs]
  file_base = visco_finite_strain_out
  exodus = true
[]

modules/porous_flow/test/tests/poro_elasticity/mandel_constM.i

# Mandel's problem of consolodation of a drained medium
#
# A sample is in plane strain.
# -a <= x <= a
# -b <= y <= b
# It is squashed with constant force by impermeable, frictionless plattens on its top and bottom surfaces (at y=+/-b)
# Fluid is allowed to leak out from its sides (at x=+/-a)
# The porepressure within the sample is monitored.
#
# As is common in the literature, this is simulated by
# considering the quarter-sample, 0<=x<=a and 0<=y<=b, with
# impermeable, roller BCs at x=0 and y=0 and y=b.
# Porepressure is fixed at zero on x=a.
# Porepressure and displacement are initialised to zero.
# Then the top (y=b) is moved downwards with prescribed velocity,
# so that the total force that is inducing this downwards velocity
# is fixed.  The velocity is worked out by solving Mandel's problem
# analytically, and the total force is monitored in the simulation
# to check that it indeed remains constant.
#
# Here are the problem's parameters, and their values:
# Soil width.  a = 1
# Soil height.  b = 0.1
# Soil's Lame lambda.  la = 0.5
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = G = 0.75
# Soil bulk modulus.  K = la + 2*mu/3 = 1
# Drained Poisson ratio.  nu = (3K - 2G)/(6K + 2G) = 0.2
# Soil bulk compliance.  1/K = 1
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Biot modulus.  M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 4.705882
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.694118
# Undrained Poisson ratio.  nuu = (3Ku - 2G)/(6Ku + 2G) = 0.372627
# Skempton coefficient.  B = alpha*M/Ku = 1.048035
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Consolidation coefficient.  c = 2*k*B^2*G*(1-nu)*(1+nuu)^2/9/(1-nuu)/(nuu-nu) = 3.821656
# Normal stress on top.  F = 1
#
# The solution for porepressure and displacements is given in
# AHD Cheng and E Detournay "A direct boundary element method for plane strain poroelasticity" International Journal of Numerical and Analytical Methods in Geomechanics 12 (1988) 551-572.
# The solution involves complicated infinite series, so I shall not write it here

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 0.1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1e-5
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./roller_xmin]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left'
  [../]
  [./roller_ymin]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom'
  [../]
  [./plane_strain]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
  [./xmax_drained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = right
  [../]
  [./top_velocity]
    type = FunctionDirichletBC
    variable = disp_y
    function = top_velocity
    boundary = top
  [../]
[]

[Functions]
  [./top_velocity]
    type = PiecewiseLinear
    x = '0 0.002 0.006   0.014   0.03    0.046   0.062   0.078   0.094   0.11    0.126   0.142   0.158   0.174   0.19 0.206 0.222 0.238 0.254 0.27 0.286 0.302 0.318 0.334 0.35 0.366 0.382 0.398 0.414 0.43 0.446 0.462 0.478 0.494 0.51 0.526 0.542 0.558 0.574 0.59 0.606 0.622 0.638 0.654 0.67 0.686 0.702'
    y = '-0.041824842    -0.042730269    -0.043412712    -0.04428867     -0.045509181    -0.04645965     -0.047268246 -0.047974749      -0.048597109     -0.0491467  -0.049632388     -0.050061697      -0.050441198     -0.050776675     -0.051073238      -0.0513354 -0.051567152      -0.051772022     -0.051953128 -0.052113227 -0.052254754 -0.052379865 -0.052490464 -0.052588233 -0.052674662 -0.052751065 -0.052818606 -0.052878312 -0.052931093 -0.052977751 -0.053018997 -0.053055459 -0.053087691 -0.053116185 -0.053141373 -0.05316364 -0.053183324 -0.053200724 -0.053216106 -0.053229704 -0.053241725 -0.053252351 -0.053261745 -0.053270049 -0.053277389 -0.053283879 -0.053289615'
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_force]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./tot_force]
    type = ParsedAux
    args = 'stress_yy porepressure'
    execute_on = timestep_end
    variable = tot_force
    function = '-stress_yy+0.6*porepressure'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = porepressure
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = porepressure
    gravity = '0 0 0'
    fluid_component = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 8
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityHMBiotModulus
    porosity_zero = 0.1
    biot_coefficient = 0.6
    solid_bulk = 1
    constant_fluid_bulk_modulus = 8
    constant_biot_modulus = 4.7058823529
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0 # unimportant in this fully-saturated situation
    phase = 0
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0.0 0 0'
    variable = porepressure
  [../]
  [./p1]
    type = PointValue
    outputs = csv
    point = '0.1 0 0'
    variable = porepressure
  [../]
  [./p2]
    type = PointValue
    outputs = csv
    point = '0.2 0 0'
    variable = porepressure
  [../]
  [./p3]
    type = PointValue
    outputs = csv
    point = '0.3 0 0'
    variable = porepressure
  [../]
  [./p4]
    type = PointValue
    outputs = csv
    point = '0.4 0 0'
    variable = porepressure
  [../]
  [./p5]
    type = PointValue
    outputs = csv
    point = '0.5 0 0'
    variable = porepressure
  [../]
  [./p6]
    type = PointValue
    outputs = csv
    point = '0.6 0 0'
    variable = porepressure
  [../]
  [./p7]
    type = PointValue
    outputs = csv
    point = '0.7 0 0'
    variable = porepressure
  [../]
  [./p8]
    type = PointValue
    outputs = csv
    point = '0.8 0 0'
    variable = porepressure
  [../]
  [./p9]
    type = PointValue
    outputs = csv
    point = '0.9 0 0'
    variable = porepressure
  [../]
  [./p99]
    type = PointValue
    outputs = csv
    point = '1 0 0'
    variable = porepressure
  [../]
  [./xdisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_x
  [../]
  [./ydisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_y
  [../]
  [./total_downwards_force]
     type = ElementAverageValue
     outputs = csv
     variable = tot_force
  [../]
  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.15*t<0.01,0.15*t,0.01)
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres asm lu 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 0.7
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.001
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mandel_constM
  [./csv]
    interval = 3
    type = CSV
  [../]
[]

modules/combined/test/tests/thermal_elastic/thermal_elastic.i

# Patch Test

# This test is designed to compute constant xx, yy, zz, xy, yz, and xz
#  stress on a set of irregular hexes.  The mesh is composed of one
#  block with seven elements.  The elements form a unit cube with one
#  internal element.  There is a nodeset for each exterior node.

# The cube is displaced by 1e-6 units in x, 2e-6 in y, and 3e-6 in z.
#  The faces are sheared as well (1e-6, 2e-6, and 3e-6 for xy, yz, and
#  zx).  This gives a uniform strain/stress state for all six unique
#  tensor components.  This displacement is again applied in the second
#  step.

# With Young's modulus at 1e6 and Poisson's ratio at 0, the shear
#  modulus is 5e5 (G=E/2/(1+nu)).  Therefore, for the mechanical strain,
#
#  stress xx = 1e6 * 1e-6 = 1
#  stress yy = 1e6 * 2e-6 = 2
#  stress zz = 1e6 * 3e-6 = 3
#  stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 5e5 * 2e-6 / 2 = 1
#  stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5

# Young's modulus is a function of temperature for this test.  The
#  temperature changes from 100 to 500.  The Young's modulus drops
#  due to that temperature change from 1e6 to 6e5.

# Poisson's ratio also is a function of temperature and changes from
#  0 to 0.25.

# At the end of the temperature ramp, E=6e5 and nu=0.25.  This gives
#  G=2.4e=5.  lambda=E*nu/(1+nu)/(1-2*nu)=2.4E5.  The final stress
#  is therefore

#  stress xx = 2.4e5 * 12e-6 + 2*2.4e5*2e-6 = 3.84
#  stress yy = 2.4e5 * 12e-6 + 2*2.4e5*4e-6 = 4.80
#  stress zz = 2.4e5 * 12e-6 + 2*2.4e5*6e-6 = 5.76
#  stress xy = 2 * 2.4e5 * 2e-6 / 2 = 0.48
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 2.4e5 * 4e-6 / 2 = 0.96
#  stress xz = 2 * 2.4e5 * 6e-6 / 2 = 1.44

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = thermal_elastic.e
[]

[Functions]
  [./ramp1]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 1e-6
  [../]
  [./ramp2]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 2e-6
  [../]
  [./ramp3]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 3e-6
  [../]
  [./ramp4]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 4e-6
  [../]
  [./ramp6]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 6e-6
  [../]
  [./tempFunc]
    type = PiecewiseLinear
    x = '0     1     2'
    y = '100.0 100.0 500.0'
  [../]
[]

[Variables]
  [./temp]
    initial_condition = 100.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_xz stress_yz'
    strain = FINITE
  [../]
[]

[Kernels]
  [./heat]
    type = Diffusion
    variable = temp
  [../]
[]

[BCs]
  [./node1_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./node1_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = ramp2
  [../]
  [./node1_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 1
    function = ramp3
  [../]

  [./node2_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = ramp1
  [../]
  [./node2_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = ramp2
  [../]
  [./node2_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 2
    function = ramp6
  [../]

  [./node3_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 3
    function = ramp1
  [../]
  [./node3_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./node3_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 3
    function = ramp3
  [../]

  [./node4_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./node4_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
  [./node4_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]

  [./node5_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 5
    function = ramp1
  [../]
  [./node5_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = ramp4
  [../]
  [./node5_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 5
    function = ramp3
  [../]

  [./node6_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 6
    function = ramp2
  [../]
  [./node6_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 6
    function = ramp4
  [../]
  [./node6_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 6
    function = ramp6
  [../]

  [./node7_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 7
    function = ramp2
  [../]
  [./node7_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 7
    function = ramp2
  [../]
  [./node7_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 7
    function = ramp3
  [../]

  [./node8_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 8
    function = ramp1
  [../]
  [./node8_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 8
    function = ramp2
  [../]
  [./node8_z]
    type = DirichletBC
    variable = disp_z
    boundary = 8
    value = 0.0
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = '10 12'
    function = tempFunc
  [../]
[]

[Materials]
  [./youngs_modulus]
    type = PiecewiseLinearInterpolationMaterial
    x = '100 500'
    y = '1e6 6e5'
    property = youngs_modulus
    variable = temp
  [../]
  [./poissons_ratio]
    type = PiecewiseLinearInterpolationMaterial
    x = '100 500'
    y = '0   0.25'
    property = poissons_ratio
    variable = temp
  [../]

  [./elasticity_tensor]
    type = ComputeVariableIsotropicElasticityTensor
    args = temp
    youngs_modulus = youngs_modulus
    poissons_ratio = poissons_ratio
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-9

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/crank-nicolson/cranic_adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 4
  ny = 4
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
    value = sin(pi*x)*sin(pi*y)+2*t*pi*pi*sin(pi*x)*sin(pi*y)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*sin(pi*x)*sin(pi*y)
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  # Use the block format instead of the scheme parameter
  [./TimeIntegrator]
    type = CrankNicolson
  [../]

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.1

  [./Adaptivity]
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/transfers/multiapp_userobject_transfer/tosub_master.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 20
  ny = 20
  nz = 20
  # The MultiAppUserObjectTransfer object only works with ReplicatedMesh
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./layered_average_value]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./layered_aux]
    type = SpatialUserObjectAux
    variable = layered_average_value
    execute_on = timestep_end
    user_object = layered_average
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 0
  [../]
  [./top]
    type = DirichletBC
    variable = u
    boundary = top
    value = 1
  [../]
[]

[UserObjects]
  [./layered_average]
    type = LayeredAverage
    variable = u
    direction = y
    num_layers = 4
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    execute_on = timestep_end
    positions = '0.3 0.1 0.3 0.7 0.1 0.3'
    type = TransientMultiApp
    input_files = tosub_sub.i
    app_type = MooseTestApp
  [../]
[]

[Transfers]
  [./layered_transfer]
    direction = to_multiapp
    user_object = layered_average
    variable = multi_layered_average
    type = MultiAppUserObjectTransfer
    multi_app = sub_app
  [../]
  [./element_layered_transfer]
    direction = to_multiapp
    user_object = layered_average
    variable = element_multi_layered_average
    type = MultiAppUserObjectTransfer
    multi_app = sub_app
  [../]
[]

modules/tensor_mechanics/test/tests/j_integral_vtest/j_int_surfbreak_ellip_crack_sym_mm.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = ellip_crack_4sym_norad_mm.e
  partitioner = centroid
  centroid_partitioner_direction = z
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./resid_z]
  [../]
[]

[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.1'
    scale_factor = -689.5 #MPa
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 1001
  crack_direction_method = CurvedCrackFront
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0.0 1.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  radius_inner = '12.5 25.0 37.5'
  radius_outer = '25.0 37.5 50.0'
  intersecting_boundary = '1 2'
  symmetry_plane = 2
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 12
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 5
      function = rampConstantUp
    [../]
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 206800
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

#  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'
  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   nl_rel_tol = 1e-11
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./lin_its]
    type = NumLinearIterations
  [../]
  [./react_z]
    type = NodalSum
    variable = resid_z
    boundary = 5
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = j_int_surfbreak_ellip_crack_sym_mm_out
  exodus = true
  csv = true
[]

modules/chemical_reactions/test/tests/parser/kinetic_action.i

# Test SolidKineticReactions parser

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a]
    initial_condition = 0.1
  [../]
  [./b]
    initial_condition = 0.1
  [../]
  [./c]
    initial_condition = 0.1
  [../]
  [./d]
    initial_condition = 0.1
  [../]
[]

[ReactionNetwork]
  [./SolidKineticReactions]
    primary_species = 'a b c d'
    secondary_species = 'm1 m2 m3'
    kin_reactions = '(1.0)a + (1.0)b = m1,
                      2c + 3d = m2,
                      a - 2c = m3'
    log10_keq = '-8 -8 -8'
    specific_reactive_surface_area = '1 2 3'
    kinetic_rate_constant = '1e-8 2e-8 3e-8'
    activation_energy = '1e4 2e4 3e4'
    gas_constant = 8.314
    reference_temperature = '298.15 298.15 298.15'
    system_temperature = '298.15 298.15 298.15'
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./c_ie]
    type = PrimaryTimeDerivative
    variable = c
  [../]
  [./d_ie]
    type = PrimaryTimeDerivative
    variable = d
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = porosity
    prop_values = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  end_time = 1
  l_tol = 1e-10
  nl_rel_tol = 1e-10
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  file_base = kinetic_out
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

test/tests/multiapps/picard_multilevel/fullsolve_multilevel/sub_level2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
[]

[Variables]
  [w]
  []
[]

[AuxVariables]
  [v]
  []
[]

[Kernels]
  [time_derivative]
    type = TimeDerivative
    variable = w
  []
  [diffusion]
    type = Diffusion
    variable = w
  []
  [source]
    type = CoupledForce
    variable = w
    v = v
  []
[]

[BCs]
  [dirichlet]
    type = DirichletBC
    variable = w
    boundary = '0'
    value = 0
  []
[]

[Postprocessors]
  [avg_v]
    type = ElementAverageValue
    variable = v
    execute_on = 'initial linear'
  []
  [avg_w]
    type = ElementAverageValue
    variable = w
    execute_on = 'initial linear'
  []
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart '
  petsc_options_value = 'hypre boomeramg 100'

  end_time = 0.1
  dt = 0.02
  # steady_state_detection = true
[]


[Outputs]
  exodus = true
  csv = true
  # print_linear_residuals = false
[]

modules/tensor_mechanics/test/tests/isotropic_elasticity_tensor/2D-axisymmetric_rz_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD8
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
  [../]
[]

[AuxVariables]
  [./stress_theta]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_theta]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_theta
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./elasticity_tensor]
    #Material constants selected to match isotropic lambda and shear modulus case
    type = ComputeElasticityTensor
    C_ijkl = '1022726 113636 113636 1022726 454545'
    fill_method = axisymmetric_rz
  [../]
  [./elastic_stress]
    type = ComputeLinearElasticStress
  [../]
[]

[BCs]
# pin particle along symmetry planes
  [./no_disp_r]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0.0
  [../]

  [./no_disp_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_r]
    type = Pressure
    variable = disp_r
    boundary = right
    component = 0
    factor = 200000
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '  201               hypre    boomeramg      10'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

  start_time = 0.0
  end_time = 1
  num_steps = 1000

  dtmax = 5e6
  dtmin = 1

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    optimal_iterations = 6
    iteration_window = 0
    linear_iteration_ratio = 100
  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  file_base = 2D-axisymmetric_rz_test_out
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/basic_advection4.i

# Basic advection with 1 porepressure and temperature as PorousFlow variables
# Constant permeability
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./u]
  [../]
  [./T]
  [../]
  [./P]
  [../]
[]

[ICs]
  [./P]
    type = RandomIC
    variable = P
    min = 2E5
    max = 4E5
  [../]
  [./T]
    type = RandomIC
    variable = T
    min = 300
    max = 900
  [../]
  [./u]
    type = RandomIC
    variable = u
  [../]
[]

[Kernels]
  [./dummy_T]
    type = NullKernel
    variable = T
  [../]
  [./dummy_P]
    type = NullKernel
    variable = P
  [../]
  [./u_advection]
    type = PorousFlowBasicAdvection
    variable = u
    phase = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'P T'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1E-5
    m = 0.6
    sat_lr = 0.1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./methane]
      type = MethaneFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
    temperature = T
  [../]
  [./ppss_qp]
    type = PorousFlow1PhaseP
    porepressure = P
    capillary_pressure = pc
  [../]
  [./fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = methane
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '5 0 0 0 5 0 0 0 5'
  [../]
  [./relperm_qp]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./darcy_velocity_qp]
    type = PorousFlowDarcyVelocityMaterial
    gravity = '0.25 0 0'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-snes_type'
    petsc_options_value = ' test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/stochastic_tools/test/tests/transfers/sampler_postprocessor/errors/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Postprocessors]
  [avg]
    type = AverageNodalVariableValue
    variable = u
  []
[]

[Outputs]
[]

modules/tensor_mechanics/test/tests/multi/paper5.i

# This runs the J2+cap+hardening example model described in the 'MultiSurface' plasticity paper
#
# Plasticity models:
# J2 with strength = 20MPa to 10MPa in 100% strain
# Compressive cap with strength = 15MPa to 5MPa in 100% strain
#
# Lame lambda = 1.2GPa.  Lame mu = 1.2GPa (Young = 3GPa, poisson = 0.25)
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./linesearch]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ld]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./constr_added]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./intnl0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl0
  [../]
  [./intnl1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl1
  [../]
  [./linesearch]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = linesearch
  [../]
  [./ld]
    type = MaterialRealAux
    property = plastic_linear_dependence_encountered
    variable = ld
  [../]
  [./constr_added]
    type = MaterialRealAux
    property = plastic_constraints_added
    variable = constr_added
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./max_f0]
    type = ElementExtremeValue
    variable = f0
    outputs = console
  [../]
  [./max_f1]
    type = ElementExtremeValue
    variable = f1
    outputs = console
  [../]
  [./max_iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console csv'
  [../]
  [./av_linesearch]
    type = ElementAverageValue
    variable = linesearch
    outputs = 'console csv'
  [../]
  [./av_ld]
    type = ElementAverageValue
    variable = ld
    outputs = 'console csv'
  [../]
  [./av_constr_added]
    type = ElementAverageValue
    variable = constr_added
    outputs = 'console csv'
  [../]
[]

[UserObjects]
  [./yield_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 20E6
    value_residual = 10E6
    internal_limit = 1
  [../]
  [./j2]
    type = TensorMechanicsPlasticJ2
    yield_strength = yield_strength
    yield_function_tolerance = 1.0E2
    internal_constraint_tolerance = 1.0E-7
    use_custom_returnMap = false
  [../]


  [./compressive_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 15E6
    value_residual = 5E6
    internal_limit = 1
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCap
    a = -1
    strength = compressive_strength
    yield_function_tolerance = 1.0E2
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1.2E9 1.2E9'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5

    plastic_models = 'j2 cap'
    max_NR_iterations = 10
    deactivation_scheme = 'safe'
    min_stepsize = 1
    max_stepsize_for_dumb = 1
    tangent_operator = elastic # tangent operator is unimportant in this test

    debug_fspb = crash
    debug_jac_at_stress = '10E6 0 0 0 10E6 0 0 0 10E6'
    debug_jac_at_pm = '1E-2 1E-2'
    debug_jac_at_intnl = '0.05 0.05'
    debug_stress_change = 1E1
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = paper5
  exodus = false
  csv = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/1D_axisymmetric/axisymm_gps_incremental.i

# this test checks the asixymmetric 1D generalized plane strain formulation using incremental small strains

[GlobalParams]
  displacements = disp_x
  scalar_out_of_plane_strain = scalar_strain_yy
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = line.e
[]

[Variables]
  [./disp_x]
  [../]
  [./scalar_strain_yy]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    initial_condition = 580.0
  [../]
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '580 580 680'
  [../]
  [./disp_x]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 2e-6'
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./GeneralizedPlaneStrain]
      [./gps]
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./temp]
    type = FunctionAux
    variable = temp
    function = temp
    execute_on = 'timestep_begin'
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    boundary = 1
    value = 0
    variable = disp_x
  [../]
  [./disp_x]
    type = FunctionDirichletBC
    boundary = 2
    function = disp_x
    variable = disp_x
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 3600
    poissons_ratio = 0.2
  [../]

  [./strain]
    type = ComputeAxisymmetric1DIncrementalStrain
    eigenstrain_names = eigenstrain
    scalar_out_of_plane_strain = scalar_strain_yy
  [../]

  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-8
    temperature = temp
    stress_free_temperature = 580
    eigenstrain_name = eigenstrain
  [../]

  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_max_its = 50
  l_tol = 1e-6
  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  start_time = 0
  end_time = 2
  num_steps = 2
[]

[Outputs]
  exodus = true
  console = true
[]

test/tests/utils/apply_input_parameters/apply_input_parameters.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[ApplyInputParametersTest]
  # Builds CoefDiffusion
  coef = 0.1
  variable = u
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/phase_field_fracture/crack2d_computeCrackedStress_finitestrain_elastic.i

#This input uses PhaseField-Nonconserved Action to add phase field fracture bulk rate kernels
[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 40
    ny = 20
    ymax = 0.5
  []
  [./noncrack]
    type = BoundingBoxNodeSetGenerator
    new_boundary = noncrack
    bottom_left = '0.5 0 0'
    top_right = '1 0 0'
    input = gen
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./strain_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./All]
        add_variables = true
        strain = FINITE
        planar_formulation = PLANE_STRAIN
        additional_generate_output = 'stress_yy'
        strain_base_name = uncracked
      [../]
    [../]
  [../]
  [./PhaseField]
    [./Nonconserved]
      [./c]
        free_energy = E_el
        kappa = kappa_op
        mobility = L
      [../]
    [../]
  [../]
[]

[Kernels]
  [./solid_x]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_x
    component = 0
    c = c
  [../]
  [./solid_y]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_y
    component = 1
    c = c
  [../]
  [./off_disp]
    type = AllenCahnElasticEnergyOffDiag
    variable = c
    displacements = 'disp_x disp_y'
    mob_name = L
  [../]
[]

[AuxKernels]
  [./strain_yy]
    type = RankTwoAux
    variable = strain_yy
    rank_two_tensor = uncracked_mechanical_strain
    index_i = 1
    index_j = 1
    execute_on = TIMESTEP_END
  [../]
[]

[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 't'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = noncrack
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0
  [../]
[]

[Materials]
  [./pfbulkmat]
    type = GenericConstantMaterial
    prop_names = 'gc_prop l visco'
    prop_values = '1e-3 0.05 1e-4'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
    base_name = uncracked
  [../]
  [./elastic]
    type = ComputeFiniteStrainElasticStress
    base_name = uncracked
  [../]
  [./cracked_stress]
    type = ComputeCrackedStress
    c = c
    kdamage = 1e-5
    F_name = E_el
    use_current_history_variable = true
    uncracked_base_name = uncracked
    finite_strain_model = true
  [../]
[]

[Postprocessors]
  [./av_stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./av_strain_yy]
    type = SideAverageValue
    variable = disp_y
    boundary = top
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_factor_mat_solving_package'
  petsc_options_value = 'lu superlu_dist'

  nl_rel_tol = 1e-8
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 10

  dt = 3e-5
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/initial_conditions/HexPolycrystalIC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 19
  ny = 19
[]

[GlobalParams]
  op_num = 9
  var_name_base = gr
  grain_num = 36
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./hex_ic]
    type = PolycrystalHex
    coloring_algorithm = bt
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = hex_ic
    [../]
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  [./out]
    type = Exodus
    execute_on = final
  [../]
[]

modules/phase_field/test/tests/initial_conditions/SmoothCircleIC_3D.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 15
  ny = 15
  nz = 15
  xmax = 50
  ymax = 50
  zmax = 50
  elem_type = HEX8
[]

[Variables]
  [./c]
  [../]
[]

[ICs]
  [./c]
    type = SmoothCircleIC
    variable = c
    x1 = 25.0
    y1 = 25.0
    radius = 12
    invalue = 1.0
    outvalue = 0
    int_width = 12
    3D_spheres = false
    z1 = 25
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./Diffusion]
    type = MatDiffusion
    variable = c
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y z'
    [../]
  [../]
[]

[Materials]
  [./Diffusivity]
    type = GenericConstantMaterial
    prop_names = D
    prop_values = 1.0
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 20
  l_tol = 1.0e-5
  nl_max_its = 40
  nl_rel_tol = 5.0e-14

  start_time = 0.0
  num_steps = 1
  dt = 2.0
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/sinks/s05.i

# apply a half-gaussian sink flux and observe the correct behavior
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1.1
  [../]
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = y+1.4
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.3
      density0 = 1.1
      thermal_expansion = 0
      viscosity = 1.1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-5 0 0 0 1E-5 0 0 0 1E-5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[AuxVariables]
  [./flux_out]
  [../]
[]

[Functions]
  [./mass10]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)*if(pp>=0,1,pow(1+pow(-al*pp,1.0/(1-m)),-m))'
    vars = 'vol por dens0 pp bulk al m'
    vals = '0.25 0.1 1.1 p10 1.3 1.1 0.5'
  [../]
  [./rate10]
    type = ParsedFunction
    value = 'if(pp>center,fcn,fcn*exp(-0.5*(pp-center)*(pp-center)/sd/sd))'
    vars = 'fcn pp  center sd'
    vals = '6   p10 0.9    0.5'
  [../]
  [./mass10_expect]
    type = ParsedFunction
    value = 'mass_prev-rate*area*dt'
    vars = 'mass_prev rate     area dt'
    vals = 'm10_prev  m10_rate 0.5 2E-3'
  [../]
  [./mass11]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)*if(pp>=0,1,pow(1+pow(-al*pp,1.0/(1-m)),-m))'
    vars = 'vol por dens0 pp bulk al m'
    vals = '0.25 0.1 1.1 p11 1.3 1.1 0.5'
  [../]
  [./rate11]
    type = ParsedFunction
    value = 'if(pp>center,fcn,fcn*exp(-0.5*(pp-center)*(pp-center)/sd/sd))'
    vars = 'fcn pp  center sd'
    vals = '6   p11 0.9    0.5'
  [../]
  [./mass11_expect]
    type = ParsedFunction
    value = 'mass_prev-rate*area*dt'
    vars = 'mass_prev rate     area dt'
    vals = 'm11_prev  m11_rate 0.5 2E-3'
  [../]
[]

[Postprocessors]
  [./flux10]
    type = PointValue
    variable = flux_out
    point = '1 0 0'
  [../]
  [./p00]
    type = PointValue
    point = '0 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./p10]
    type = PointValue
    point = '1 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m10]
    type = FunctionValuePostprocessor
    function = mass10
    execute_on = 'initial timestep_end'
  [../]
  [./m10_prev]
    type = FunctionValuePostprocessor
    function = mass10
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./m10_rate]
    type = FunctionValuePostprocessor
    function = rate10
    execute_on = 'timestep_end'
  [../]
  [./m10_expect]
    type = FunctionValuePostprocessor
    function = mass10_expect
    execute_on = 'timestep_end'
  [../]
  [./p01]
    type = PointValue
    point = '0 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./p11]
    type = PointValue
    point = '1 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m11]
    type = FunctionValuePostprocessor
    function = mass11
    execute_on = 'initial timestep_end'
  [../]
  [./m11_prev]
    type = FunctionValuePostprocessor
    function = mass11
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./m11_rate]
    type = FunctionValuePostprocessor
    function = rate11
    execute_on = 'timestep_end'
  [../]
  [./m11_expect]
    type = FunctionValuePostprocessor
    function = mass11_expect
    execute_on = 'timestep_end'
  [../]
[]

[BCs]
  [./flux]
    type = PorousFlowHalfGaussianSink
    boundary = 'right'
    max = 6
    sd = 0.5
    center = 0.9
    variable = pp
    use_mobility = false
    use_relperm = false
    fluid_phase = 0
    flux_function = 1
    save_in = flux_out
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_max_it -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu 10000 NONZERO 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 2E-3
  end_time = 6E-2
  nl_rel_tol = 1E-12
  nl_abs_tol = 1E-12
[]

[Outputs]
  file_base = s05
  [./console]
    type = Console
    execute_on = 'nonlinear linear'
    interval = 5
  [../]
  [./csv]
    type = CSV
    execute_on = 'timestep_end'
    interval = 3
  [../]
[]

modules/combined/test/tests/cavity_pressure/negative_volume.i

#
# Cavity Pressure Test
#
# This test is designed to compute a negative number of moles
# to trigger an error check in the CavityPressureUserObject.
# The negative number of moles is achieved by supplying an
# open volume to the InternalVolume postprocessor, which
# calculates a negative volume.

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 2
[]

[Functions]
  [./temperature]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 2'
    scale_factor = 100
  [../]
[]

[Variables]
  [./temperature]
    initial_condition = 100
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    strain = FINITE
    add_variables = true
  [../]
[]

[Kernels]
  [./heat]
    type = Diffusion
    variable = temperature
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]
  [./temperatureInterior]
    type = FunctionDirichletBC
    boundary = 2
    function = temperature
    variable = temperature
  [../]
  [./CavityPressure]
    [./pressure]
      boundary = 'top bottom right'
      initial_pressure = 10e5
      R = 8.3143
      output_initial_moles = initial_moles
      temperature = aveTempInterior
      volume = internalVolume
      startup_time = 0.5
      output = ppress
    [../]
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress1]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  nl_abs_tol = 1e-10
  l_max_its = 20
  dt = 0.5
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 'top bottom right'
    execute_on = 'initial linear'
  [../]
  [./aveTempInterior]
    type = AxisymmetricCenterlineAverageValue
    boundary = left
    variable = temperature
    execute_on = 'initial linear'
  [../]
[]

[Outputs]
  exodus = false
[]

test/tests/outputs/console/additional_execute_on.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./console]
    type = Console
    additional_execute_on = initial
  [../]
[]

test/tests/transfers/multiapp_mesh_function_transfer/fromsub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = -.01
  xmax = 0.21
  ymin = -.01
  ymax = 0.21
  displacements = 'x_disp y_disp'
[]

[Variables]
  [./sub_u]
  [../]
[]

[AuxVariables]
  [./x_disp]
    initial_condition = 0.2
  [../]
  [./y_disp]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = sub_u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = sub_u
    boundary = left
    value = 1
  [../]
  [./right]
    type = DirichletBC
    variable = sub_u
    boundary = right
    value = 4
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/disp03.i

# Test the Jacobian of the dispersive contribution to the PorousFlowDisperiveFlux
# kernel by setting the diffusive component to zero (tortuosity = 0).

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
[]

[ICs]
  [./pp]
    type = RandomIC
    variable = pp
    max = 2e1
    min = 1e1
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = pp
    gravity = '1 0 0'
    disp_long = 0.2
    disp_trans = 0.1
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    gravity = '1 0 0'
    disp_long = 0.2
    disp_trans = 0.1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1e7
      density0 = 10
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temp]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1e-2 1e-1'
    tortuosity = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
[]

[Preconditioning]
  active = smp
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/auxkernels/element_aux_boundary/element_aux_boundary.i

[Mesh]
  type = FileMesh
  file = rectangle.e
  dim = 2
  uniform_refine = 2
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./real_property]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./real_property]
    type = MaterialRealAux
    variable = real_property
    property = real_property
    boundary = '1 2'
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Materials]
  [./boundary_1]
    type = OutputTestMaterial
    boundary = 1
    real_factor = 2
    variable = u
  [../]
  [./boundary_2]
    type = OutputTestMaterial
    boundary = 2
    real_factor = 2
    variable = u
 [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/sliding_block/sliding/constraint/sm/frictionless_aug_sm.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the augmented lagrangian method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./contact_traction]
  [../]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  dt = 0.1
  end_time = 15
  num_steps = 200
  l_tol = 1e-6
  nl_rel_tol = 1e-7
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 25
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    normalize_penalty = true
    formulation = augmented_lagrange
    tangential_tolerance = 1e-3
    system = constraint
    normal_smoothing_distance = 0.1
    al_penetration_tolerance = 1e-9
  [../]
[]

modules/porous_flow/test/tests/fluidstate/water_vapor_phasechange.i

# Tests correct calculation of properties in PorousFlowWaterVapor as a phase change
# from liquid to a two-phase model occurs due to a pressure drop.
# A single 10 m^3 element is used, with constant mass and heat production using
# a Dirac kernel. Initial conditions correspond to just outside the two-phase region in
# the liquid state.
#
# An identical problem can be run using TOUGH2, with the following outputs after 1,000s
# Pressure: 8.58 Mpa
# Temperature: 299.92 K
# Vapor saturation: 0.00637

[Mesh]
  type = GeneratedMesh
  dim = 3
  xmax = 10
  ymax = 10
  zmax = 10
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pliq]
    initial_condition = 9e6
  [../]
  [./h]
    scaling = 1e-3
  [../]
[]

[ICs]
  [./hic]
    type = PorousFlowFluidPropertyIC
    variable = h
    porepressure = pliq
    property = enthalpy
    temperature = 300
    temperature_unit = Celsius
    fp = water
  [../]
[]

[DiracKernels]
  [./mass]
    type = ConstantPointSource
    point = '5 5 5'
    variable = pliq
    value = -1
  [../]
  [./heat]
    type = ConstantPointSource
    point = '5 5 5'
    variable = h
    value = -1.344269e6
  [../]
[]

[AuxVariables]
  [./pressure_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temperature]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./enthalpy_water]
    type = PorousFlowPropertyAux
    variable = enthalpy_water
    property = enthalpy
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./enthalpy_gas]
    type = PorousFlowPropertyAux
    variable = enthalpy_gas
    property = enthalpy
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./pressure_water]
    type = PorousFlowPropertyAux
    variable = pressure_water
    property = pressure
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./pressure_gas]
    type = PorousFlowPropertyAux
    variable = pressure_gas
    property = pressure
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation_water
    property = saturation
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./density_water]
    type = PorousFlowPropertyAux
    variable = density_water
    property = density
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./density_gas]
    type = PorousFlowPropertyAux
    variable = density_gas
    property = density
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_water]
    type = PorousFlowPropertyAux
    variable = viscosity_water
    property = viscosity
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_gas]
    type = PorousFlowPropertyAux
    variable = viscosity_gas
    property = viscosity
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./temperature]
    type = PorousFlowPropertyAux
    variable = temperature
    property = temperature
    execute_on = 'initial timestep_end'
  [../]
  [./e_water]
    type = PorousFlowPropertyAux
    variable = e_water
    property = internal_energy
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./egas]
    type = PorousFlowPropertyAux
    variable = e_gas
    property = internal_energy
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
[]

[Kernels]
  [./mass]
    type = PorousFlowMassTimeDerivative
    variable = pliq
  [../]
  [./heat]
    type = PorousFlowEnergyTimeDerivative
    variable = h
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pliq h'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureBC
    pe = 1e5
    lambda = 2
    pc_max = 1e6
  [../]
  [./fs]
    type = PorousFlowWaterVapor
    water_fp = water
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./watervapor]
    type = PorousFlowFluidStateSingleComponent
    porepressure = pliq
    enthalpy = h
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-14 0 0 0 1e-14 0 0 0 1e-14'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./internal_energy]
    type = PorousFlowMatrixInternalEnergy
    density = 2650
    specific_heat_capacity = 1000
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1e3
  nl_abs_tol = 1e-12
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 10
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./density_water]
    type = ElementAverageValue
    variable = density_water
    execute_on = 'initial timestep_end'
  [../]
  [./density_gas]
    type = ElementAverageValue
    variable = density_gas
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_water]
    type = ElementAverageValue
    variable = viscosity_water
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_gas]
    type = ElementAverageValue
    variable = viscosity_gas
    execute_on = 'initial timestep_end'
  [../]
  [./enthalpy_water]
    type = ElementAverageValue
    variable = enthalpy_water
    execute_on = 'initial timestep_end'
  [../]
  [./enthalpy_gas]
    type = ElementAverageValue
    variable = enthalpy_gas
    execute_on = 'initial timestep_end'
  [../]
  [./sg]
    type = ElementAverageValue
    variable = saturation_gas
    execute_on = 'initial timestep_end'
  [../]
  [./sw]
    type = ElementAverageValue
    variable = saturation_water
    execute_on = 'initial timestep_end'
  [../]
  [./pwater]
    type = ElementAverageValue
    variable = pressure_water
    execute_on = 'initial timestep_end'
  [../]
  [./pgas]
    type = ElementAverageValue
    variable = pressure_gas
    execute_on = 'initial timestep_end'
  [../]
  [./temperature]
    type = ElementAverageValue
    variable = temperature
    execute_on = 'initial timestep_end'
  [../]
  [./enthalpy]
    type = ElementAverageValue
    variable = h
    execute_on = 'initial timestep_end'
  [../]
  [./pliq]
    type = ElementAverageValue
    variable = pliq
    execute_on = 'initial timestep_end'
  [../]
  [./liquid_mass]
    type = PorousFlowFluidMass
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./vapor_mass]
    type = PorousFlowFluidMass
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./liquid_heat]
    type = PorousFlowHeatEnergy
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./vapor_heat]
    type = PorousFlowHeatEnergy
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./e_water]
    type = ElementAverageValue
    variable = e_water
    execute_on = 'initial timestep_end'
  [../]
  [./e_gas]
    type = ElementAverageValue
    variable = e_gas
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  csv = true
  perf_graph = false
[]

test/tests/materials/interface_material/interface_value_material_split_mesh_stateful.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    xmax = 2
    ny = 2
    ymax = 2
    elem_type = QUAD4
  []
  [./subdomain_id]
    input = gen
    type = SubdomainBoundingBoxGenerator
    bottom_left = '1 0 0'
    top_right = '2 2 0'
    block_id = 1
  [../]
  [./split]
    type = BreakMeshByBlockGenerator
    input = subdomain_id
  [../]
[]



[Variables]
  [./u]
    block = 0
  [../]
  [./v]
    block = 1
  [../]
[]


[Kernels]
  [./diff]
    type = MatDiffusion
    variable = u
    diffusivity = 'diffusivity'
    block = 0
  [../]

  [./diff_v]
    type = MatDiffusion
    variable = v
    diffusivity = 'diffusivity'
    block = 1
  [../]
[]

[InterfaceKernels]
  [tied]
    type = PenaltyInterfaceDiffusion
    variable = u
    neighbor_var = v
    penalty = 1e6
    jump_prop_name = "average_jump"
    boundary = 'interface'
  []
[]

[BCs]
  [u_left]
    type = DirichletBC
    boundary = 'left'
    variable = u
    value = 1
  []
  [v_right]
    type = DirichletBC
    boundary = 'right'
    variable = v
    value = 0
  []
[]

[Materials]
  [./stateful1]
    type = StatefulMaterial
    block = 0
    initial_diffusivity = 1
    # outputs = all
  [../]
  [./stateful2]
    type = StatefulMaterial
    block = 1
    initial_diffusivity = 2
    # outputs = all
  [../]
  [./interface_material_avg]
      type = InterfaceValueMaterial
      mat_prop_master = diffusivity
      mat_prop_slave = diffusivity
      var_master = diffusivity_var
      var_slave = diffusivity_var
      mat_prop_out_basename = diff
      boundary = interface
      interface_value_type = average
      mat_prop_var_out_basename = diff_var
      nl_var_master = u
      nl_var_slave = v
      couple_old_values_and_properties = true
  [../]
  [./interface_material_jump_master_minus_slave]
      type = InterfaceValueMaterial
      mat_prop_master = diffusivity
      mat_prop_slave = diffusivity
      var_master = diffusivity_var
      var_slave = diffusivity_var
      mat_prop_out_basename = diff
      boundary = interface
      interface_value_type = jump_master_minus_slave
      mat_prop_var_out_basename = diff_var
      nl_var_master = u
      nl_var_slave = v
      couple_old_values_and_properties = true
  [../]
  [./interface_material_jump_slave_minus_master]
      type = InterfaceValueMaterial
      mat_prop_master = diffusivity
      mat_prop_slave = diffusivity
      var_master = diffusivity_var
      var_slave = diffusivity_var
      mat_prop_out_basename = diff
      boundary = interface
      interface_value_type = jump_slave_minus_master
      mat_prop_var_out_basename = diff_var
      nl_var_master = u
      nl_var_slave = v
      couple_old_values_and_properties = true
  [../]
  [./interface_material_jump_abs]
      type = InterfaceValueMaterial
      mat_prop_master = diffusivity
      mat_prop_slave = diffusivity
      var_master = diffusivity_var
      var_slave = diffusivity_var
      mat_prop_out_basename = diff
      boundary = interface
      interface_value_type = jump_abs
      mat_prop_var_out_basename = diff_var
      nl_var_master = u
      nl_var_slave = v
      couple_old_values_and_properties = true
  [../]
  [./interface_material_master]
      type = InterfaceValueMaterial
      mat_prop_master = diffusivity
      mat_prop_slave = diffusivity
      var_master = diffusivity_var
      var_slave = diffusivity_var
      mat_prop_out_basename = diff
      boundary = interface
      interface_value_type = master
      mat_prop_var_out_basename = diff_var
      nl_var_master = u
      nl_var_slave = v
      couple_old_values_and_properties = true
  [../]
  [./interface_material_slave]
      type = InterfaceValueMaterial
      mat_prop_master = diffusivity
      mat_prop_slave = diffusivity
      var_master = diffusivity_var
      var_slave = diffusivity_var
      mat_prop_out_basename = diff
      mat_prop_var_out_basename = diff_var
      boundary = interface
      interface_value_type = slave
      nl_var_master = u
      nl_var_slave = v
      couple_old_values_and_properties = true
  [../]
[]

[AuxKernels]
  [./interface_material_avg]
    type = MaterialRealAux
    property = diff_average
    variable = diffusivity_average
    boundary = interface
  []
  [./interface_material_jump_master_minus_slave]
    type = MaterialRealAux
    property = diff_jump_master_minus_slave
    variable = diffusivity_jump_master_minus_slave
    boundary = interface
  []
  [./interface_material_jump_slave_minus_master]
    type = MaterialRealAux
    property = diff_jump_slave_minus_master
    variable = diffusivity_jump_slave_minus_master
    boundary = interface
  []
  [./interface_material_jump_abs]
    type = MaterialRealAux
    property = diff_jump_abs
    variable = diffusivity_jump_abs
    boundary = interface
  []
  [./interface_material_master]
    type = MaterialRealAux
    property = diff_master
    variable = diffusivity_master
    boundary = interface
  []
  [./interface_material_slave]
    type = MaterialRealAux
    property = diff_slave
    variable = diffusivity_slave
    boundary = interface
  []
  [./interface_material_avg_prev]
    type = MaterialRealAux
    property = diff_average_prev
    variable = diffusivity_average_prev
    boundary = interface
  []
  [./interface_material_jump_master_minus_slave_prev]
    type = MaterialRealAux
    property = diff_jump_master_minus_slave_prev
    variable = diffusivity_jump_master_minus_slave_prev
    boundary = interface
  []
  [./interface_material_jump_slave_minus_master_prev]
    type = MaterialRealAux
    property = diff_jump_slave_minus_master_prev
    variable = diffusivity_jump_slave_minus_master_prev
    boundary = interface
  []
  [./interface_material_jump_abs_prev]
    type = MaterialRealAux
    property = diff_jump_abs_prev
    variable = diffusivity_jump_abs_prev
    boundary = interface
  []
  [./interface_material_master_prev]
    type = MaterialRealAux
    property = diff_master_prev
    variable = diffusivity_master_prev
    boundary = interface
  []
  [./interface_material_slave_prev]
    type = MaterialRealAux
    property = diff_slave_prev
    variable = diffusivity_slave_prev
    boundary = interface
  []
  [diffusivity_var]
    type = MaterialRealAux
    property = diffusivity
    variable = diffusivity_var
  []
[]

[AuxVariables]
  [diffusivity_var]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_average]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_jump_master_minus_slave]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_jump_slave_minus_master]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_jump_abs]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_master]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_slave]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_average_prev]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_jump_master_minus_slave_prev]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_jump_slave_minus_master_prev]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_jump_abs_prev]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_master_prev]
    family = MONOMIAL
    order = CONSTANT
  []
  [./diffusivity_slave_prev]
    family = MONOMIAL
    order = CONSTANT
  []
[]


[Executioner]
  type = Transient
  solve_type = NEWTON
  num_steps = 3
  dt = 0.5
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/mms_sine/2_d_mms_sine_postprocessor_test.i

#2_d_mms_sine_postprocessor_test.i
#This is for u = sin(a*x*y*z*t)
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 8
  ny = 8
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions] #Added so that we can use the Postprocessor
  active = 'solution'

  [./solution]
    type = ParsedFunction
    value = sin(a*x*y*z*t)
    vars = 'a'
    vals = '3.141592653589793'
  [../]
[]

[AuxVariables] #We added nodal AuxVariables
  active = 'nodal_aux'

  [./nodal_aux]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]

  active = 'diff implicit conv forcing reaction'

  [./diff]
    type = MMSDiffusion
    variable = u
  [../]

  [./implicit] #We got from MOOSE kernels
    type = MMSImplicitEuler
    variable = u
  [../]

  [./conv] #We created our own convection kernel
    type = MMSConvection
    variable = u
    x = -1
    y = 2
  [../]

  [./forcing] #We created our own forcing kernel
    type = MMSForcing
    variable = u
  [../]

  [./reaction] #We got from MOOSE kernels
    type = MMSReaction
    variable = u
  [../]
[]

[AuxKernels] #We created our own AuxKernel
  active = 'ConstantAux'

  [./ConstantAux]
    type = MMSConstantAux
    variable = nodal_aux
  [../]
[]

[BCs]
  active = 'all_u'

  [./all_u]
    type = MMSCoupledDirichletBC
    variable = u
    boundary = '0 1 2 3'
 #   value = sin(a*x*y*z*t)
  [../]
[]

[Executioner]
  type = Transient
  dt = .1
  num_steps = 5

  solve_type = 'PJFNK'
[]

[Postprocessors]
  active = 'l2_error dofs'

  [./l2_error]
    type = ElementL2Error
    variable = u
    function = solution
    execute_on = 'initial timestep_end'
  [../]

  [./dofs]
    type = NumDOFs
    execute_on = 'initial timestep_end'
  [../]
[]


[Outputs]
  file_base = 2_d_postprocessor_out
  csv = true
[]

modules/richards/test/tests/uo_egs/density.i

# Outputs a density relationship into an exodus file
# and into a CSV file.
# In the exodus file, the density will be a function of "x", and
# this "x" is actually porepressure
# In the CSV file you will find the density at the "x" point
# specified by you below.
#
# You may specify:
#  - the "type" of density in the UserObjects block
#  - the parameters of this density function in the UserObjects block
#  - the "x" point (which is porepressure) that you want to extract
#       the density at, if you want a value at a particular point
#  - the range of "x" values (which is porepressure values) may be
#       changed in the Mesh block, below


[UserObjects]
  [./density]
    type = RichardsDensityVDW
    a = 0.2303
    b = 4.31E-5
    molar_mass = 16.04246E-3
    temperature = 293
  [../]
[]

[Postprocessors]
  [./point_val]
    type = PointValue
    execute_on = timestep_begin
    # note this point must lie inside the mesh below
    point = '1 0 0'
    variable = density
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  # the following specify the range of porepressure
  xmin = -1E6
  xmax = 1E7
[]

############################
# You should not need to change any of the stuff below
############################


[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = x
  [../]
[]

[AuxVariables]
  [./density]
  [../]
[]

[AuxKernels]
  [./density_AuxK]
    type = RichardsDensityAux
    variable = density
    density_UO = density
    execute_on = timestep_begin
    pressure_var = u
  [../]
[]

[Kernels]
  [./dummy]
    type = Diffusion
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 0
[]

[Outputs]
  file_base = density
  [./csv]
    type = CSV
  [../]
  [./exodus]
    type = Exodus
    hide = u
  [../]
[]

modules/combined/test/tests/normalized_penalty/normalized_penalty_kin_Q8.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = normalized_penalty_Q8.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[AuxVariables]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[Functions]
  [./left_x]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 0.02 0'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx'
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  []
[]

[Contact]
  [./m3_s2]
    master = 3
    slave = 2
    penalty = 1e10
    normalize_penalty = true
    tangential_tolerance = 1e-3
    system = Constraint
  [../]
[]

[BCs]
  [./left_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = left_x
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2 3 4'
    value = 0.0
  [../]

  [./right]
    type = DirichletBC
    variable = disp_x
    boundary = '3 4'
    value = 0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2 3 4 1000'
    youngs_modulus = 3e8
    poissons_ratio = 0.0
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2 3 4 1000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-12
  nl_abs_tol = 5e-8

  l_max_its = 100
  nl_max_its = 20
  dt = 0.5
  num_steps = 4
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/nodal_area/nodal_area_Hex27.i

[Mesh]
  file = nodal_area_Hex27.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'displ_x displ_y displ_z'
[]

[Functions]
  [./disp]
    type = PiecewiseLinear
    x = '0     1'
    y = '0  20e-6'
  [../]
[]

[Variables]
  [./displ_x]
  [../]
  [./displ_y]
  [../]
  [./displ_z]
  [../]
[]

[AuxVariables]
  [./react_x]
  [../]
  [./react_y]
  [../]
  [./react_z]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    incremental = true
    save_in = 'react_x react_y react_z'
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx'
  [../]
[]

[BCs]
  [./move_right]
    type = FunctionDirichletBC
    boundary = '1'
    variable = displ_x
    function = disp
  [../]

  [./fixed_x]
    type = DirichletBC
    boundary = '3 4'
    variable = displ_x
    value = 0
  [../]

  [./fixed_y]
    type = DirichletBC
    boundary = 10
    variable = displ_y
    value = 0
  [../]

  [./fixed_z]
    type = DirichletBC
    boundary = 11
    variable = displ_z
    value = 0
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e8
    tangential_tolerance = 1e-4
    system = Constraint
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  #petsc_options_iname = '-snes_type -snes_ls -snes_linesearch_type -ksp_gmres_restart -pc_type'
  #petsc_options_value = 'ls         basic    basic                    201                lu'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6

  l_tol = 1e-4
  l_max_its = 40

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
  num_steps = 100

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./react_x]
    type = NodalSum
    variable = react_x
    boundary = 1
  [../]
  [./total_area]
    type = NodalSum
    variable = nodal_area_dummy_name
    boundary = 2
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/crystal_plasticity/crysp_read_slip_prop.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./rotout]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./gss1]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss1
    property = gss
    index = 0
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCrystalPlasticity
    block = 0
    gtol = 1e-2
    slip_sys_file_name = input_slip_sys_prop.txt
    nss = 12
    num_slip_sys_flowrate_props = 2 #Number of properties in a slip system
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    hprops = '1.0 541.5 60.8 109.8 2.5'
    tan_mod_type = exact
    intvar_read_type = slip_sys_file
    num_slip_sys_props = 1
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'ux uy uz'
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./gss1]
    type = ElementAverageValue
    variable = gss1
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 0.05
  dtmax = 10.0
  dtmin = 0.05

  num_steps = 10
[]

[Outputs]
  file_base = crysp_read_slip_prop_out
  exodus = true
[]

modules/combined/test/tests/mortar_tm/2drz/frictionless_first/finite.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
  [../]
  [./plank]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_2/cyl2_mu_0_2_pen.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl2_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = cyl2_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = cyl2_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/j2_plasticity_vs_LSH/necking/j2_hard1_neckingRZ.i

#

[Mesh]
  file = necking_quad4.e
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Variables]
  [./disp_r]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./AxisymmetricRZ]
    use_displaced_mesh = true
#    save_in_disp_r = force_r
    save_in_disp_z = force_z
  [../]
[]

[AuxVariables]
  [./stress_rr]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_rr]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
#  [./force_r]
#    order = FIRST
#    family = LAGRANGE
#  [../]
  [./force_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./stress_rr]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_rr
    index_i = 0
    index_j = 0
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 1
    index_j = 1
  [../]
  [./strain_rr]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_rr
    index_i = 0
    index_j = 0
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 1
    index_j = 1
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = top
    function = 't/5'
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 2.4e2
  [../]
  [./j2]
    type = TensorMechanicsPlasticJ2
    yield_strength = str
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 1
    fill_method = symmetric_isotropic
    #with E = 2.1e5 and nu = 0.3
    #changed to SM values using E-nu to Lambda-G
    C_ijkl = '121154 80769.2'
  [../]
  [./strain]
    type = ComputeAxisymmetricRZFiniteStrain
    block = 1
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 1
    ep_plastic_tolerance = 1E-9
    plastic_models = j2
  [../]
[]

[Executioner]
  end_time = 0.1
  dt = 0.005
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-15
  l_tol = 1e-9
[]

[Postprocessors]
  [./stress_rr]
    type = ElementAverageValue
    variable = stress_rr
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./strain_rr]
    type = ElementAverageValue
    variable = strain_rr
  [../]
  [./strain_zz]
    type = ElementAverageValue
    variable = strain_zz
  [../]
  [./disp_z]
    type = NodalSum
    variable = disp_z
    boundary = top
  [../]
  [./force_z]
    type = NodalSum
    variable = force_z
    boundary = top
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  print_linear_residuals = false
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/mean_cap/small_deform2.i

# apply compression in x, y and z directions such that strain = diag(-1E-6, -2E-6, 3E-6).
# With lame_lambda=0 and lame_mu=1E7, this gives
# trial_Stress = diag(-20, -40, -60), so trial_mean_Stress = -40.
# with a = -1 and strength = 30, the algorithm should return to
# stress = diag(-10, -30, -50)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-2E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-3E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
[]

[UserObjects]
  [./strength]
    type = TensorMechanicsHardeningConstant
    value = 30
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCap
    a = -1
    strength = strength
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mean_cap]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = cap
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/materials/output/output_block.i

[Mesh]
  type = FileMesh
  file = rectangle.e
  dim = 2
  uniform_refine = 1
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = CoefDiffusion
    variable = u
    coef = 0.5
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 2
  []
[]

[Materials]
  [block_1]
    type = OutputTestMaterial
    block = 1
    output_properties = 'real_property tensor_property'
    outputs = exodus
    variable = u
  []
  [block_2]
    type = OutputTestMaterial
    block = 2
    output_properties = 'vector_property tensor_property'
    outputs = exodus
    variable = u
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/chemical_reactions_richards/langmuir_jac3.i

# testing whether when we have a centre block containing 'conc' which is a CONSTANT MONOMIAL, and two-phase Richards flow, we get the correct Jacobian
[Mesh]
  type = FileMesh
  file = three_eles.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGstandard SUPGstandard'
  sat_UO = 'Saturation Saturation'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 1.1E-5'
  gravity = '0 0 -10'
  linear_shape_fcns = true
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./DensityGas]
    type = RichardsDensityMethane20degC
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 3
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E+1
  [../]
[]

[Variables]
  [./pwater]
  [../]
  [./pgas]
  [../]
  [./conc]
    family = MONOMIAL
    order = CONSTANT
    block = centre_block
  [../]
[]

[ICs]
  [./water]
    type = ConstantIC
    variable = pwater
    value = 0.0
  [../]
  [./gas]
    type = RandomIC
    variable = pgas
    min = 0
    max = 5E5
  [../]
  [./conc_ic]
    type = RandomIC
    variable = conc
    min = 0
    max = 20
    block = centre_block
  [../]
[]


[Kernels]
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
  [./c_dot]
    type = TimeDerivative
    block = centre_block
    variable = conc
  [../]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    block = centre_block
    variable = conc
    pressure_var = pgas
  [../]
  [./flux_to_porespace]
    type = DesorptionToPorespace
    block = centre_block
    variable = pgas
    conc_var = conc
  [../]
[]

[Materials]
  [./all_blocks]
    type = RichardsMaterial
    block = 'left_block centre_block right_block'
    mat_porosity = 0.02
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-16'
  [../]
  [./langmuir_params]
    type = LangmuirMaterial
    block = centre_block
    one_over_desorption_time_const = 0.813
    one_over_adsorption_time_const = 0.813
    langmuir_density = 20.0
    langmuir_pressure = 1.5E6
    pressure_var = pgas
    conc_var = conc
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3 # get rid of the large c_dot contribution
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = langmuir_jac3
[]

test/tests/vectorpostprocessors/spherical_average/spherical_average.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 10
  nz = 10
  xmin = -5
  xmax = 5
  ymin = -5
  ymax = 5
  zmin = -5
  zmax = 5
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = sin(x*7.4+z*4.1)+cos(y*3.8+x*8.7)+sin(z*9.1+y*2.6)
    [../]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[VectorPostprocessors]
  [./average]
    type = SphericalAverage
    variable = c
    radius = 5
    bin_number = 10
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  solve_type = PJFNK
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  csv = true
[]

modules/xfem/test/tests/pressure_bc/sm/edge_3d_pressure.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = false
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 9
  nz = 10
  xmin = -0.1
  xmax = 0.1
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[UserObjects]
  [./square_planar_cut_uo]
    type = RectangleCutUserObject
    cut_data = '-0.2  0.0 -0.5
                -0.2  0.0  0.0
                 0.2  0.0  0.0
                 0.2  0.0 -0.5'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 2.0 4.0 6.0 8.0'
    y = '0 1000 0 1000 0'
  [../]
[]

[DiracKernels]
  [./p_x]
    type = XFEMPressure
    variable = disp_x
    component = 0
    function = pressure
  [../]
  [./p_y]
    type = XFEMPressure
    variable = disp_y
    component = 1
    function = pressure
  [../]
  [./p_z]
    type = XFEMPressure
    variable = disp_z
    component = 2
    function = pressure
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    boundary = 'bottom top'
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 'bottom top'
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = 'bottom top'
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 207000
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  file_base = edge_3d_pressure_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/tensor_mechanics/test/tests/j_integral_vtest/j_int_surfbreak_ellip_crack_sym_mm_cfp_cm.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = ellip_crack_4sym_norad_mm.e
  partitioner = centroid
  centroid_partitioner_direction = z
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./resid_z]
  [../]
[]

[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.1'
    scale_factor = -689.5 #MPa
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  crack_direction_method = CrackMouth
  crack_mouth_boundary = 11
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0.0 1.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  crack_front_points = '0             254           0
                        127.308       248.843       0
                        249.446       233.581       0
                        361.455       208.835       0
                        508.003       152.398       0
                        602.415       80.3208       0
                        635           0             0'
  radius_inner = '12.5 25.0 37.5'
  radius_outer = '25.0 37.5 50.0'
  intersecting_boundary = '1 2'
  symmetry_plane = 2
  position_type = angle
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 12
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 5
      function = rampConstantUp
    [../]
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 206800
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

#  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   nl_rel_tol = 1e-11
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./lin_its]
    type = NumLinearIterations
  [../]
  [./react_z]
    type = NodalSum
    variable = resid_z
    boundary = 5
  [../]
[]


[Outputs]
  execute_on = 'timestep_end'
  file_base = j_int_surfbreak_ellip_crack_sym_mm_cfp_cm_out
  exodus = true
  csv = true
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test12.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 8
    ny = 8
    xmin = 0
    xmax = 4
    ymin = 0
    ymax = 4
  []

  [./mark]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    bottom_left = '0.9 0.9 0'
    top_right = '3.1 3.1 0'
  [../]
  [./delete]
    type = BlockDeletionGenerator
    block_id = 1
    input = mark
    new_boundary = cut_surface
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./outer]
    type = DirichletBC
    variable = u
    boundary = 'top bottom left right'
    value = 1
  [../]
  [./inner]
    type = DirichletBC
    variable = u
    boundary = cut_surface
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

test/tests/controls/real_function_control/real_function_control.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  dtmin = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

[Functions]
  [./func_coef]
    type = ParsedFunction
    value = '2*t + 0.1'
  [../]
[]

[Postprocessors]
  [./coef]
    type = RealControlParameterReporter
    parameter = 'Kernels/diff/coef'
  [../]
[]

[Controls]
  [./func_control]
    type = RealFunctionControl
    parameter = '*/*/coef'
    function = 'func_coef'
    execute_on = 'initial timestep_begin'
  [../]
[]

test/tests/kernels/conservative_advection/full_upwinding_jacobian.i

# Test of advection with full upwinding
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 2
  nz = 1
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u]
    type = RandomIC
    variable = u
  [../]
[]

[Kernels]
  [./advection]
    type = ConservativeAdvection
    variable = u
    upwinding_type = full
    velocity = '2 -1.1 1.23'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-snes_type'
  petsc_options_value = 'test'
  dt = 2
  end_time = 2
[]

modules/tensor_mechanics/test/tests/1D_axisymmetric/axisymm_plane_strain_incremental.i

#
# This test checks elastic stress calculations with mechanical and thermal
# strain using incremental small strain formulation. Young's modulus is 3600, and Poisson's ratio is 0.2.
# The axisymmetric, plane strain 1D mesh is pulled with 1e-6 strain.  Thus,
# the strain is [1e-6, 0, 1e-6] (xx, yy, zz).  This gives stress of
# [5e-3, 2e-3, 5e-3].  After a temperature increase of 100 with alpha of
# 1e-8, the stress becomes [-1e-3, -4e-3, -1e-3].
#

[GlobalParams]
  displacements = disp_x
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = line.e
[]

[Variables]
  [./disp_x]
  [../]
[]

[AuxVariables]
  [./temp]
    initial_condition = 580.0
  [../]
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '580 580 680'
  [../]
  [./disp_x]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 2e-6'
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./ps]
        planar_formulation = PLANE_STRAIN
        strain = SMALL
        incremental = true
        generate_output = 'strain_xx strain_zz stress_xx stress_yy stress_zz'
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    function = temp
    execute_on = 'timestep_begin'
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    boundary = 1
    value = 0
    variable = disp_x
  [../]
  [./disp_x]
    type = FunctionDirichletBC
    boundary = 2
    function = disp_x
    variable = disp_x
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 3600
    poissons_ratio = 0.2
  [../]

  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-8
    temperature = temp
    stress_free_temperature = 580
    eigenstrain_name = eigenstrain
  [../]

  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_max_its = 50
  l_tol = 1e-6
  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  start_time = 0
  end_time = 2
  num_steps = 2
[]

[Outputs]
  exodus = true
  console = true
[]

modules/phase_field/test/tests/ADCHSoretDiffusion/simple_transient_diffusion_with_soret.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [./c]
  [../]
  [./mu]
  [../]
[]

[AuxVariables]
  [./T]
    [./InitialCondition]
      type = RampIC
      value_left = 900
      value_right = 1000
    [../]
  [../]
[]

[Kernels]
  [./conc]
    type = ADCHSplitConcentration
    variable = c
    chemical_potential_var = mu
    mobility = chemical_mobility_prop
  [../]
  [./chempot]
    type = ADCHSplitChemicalPotential
    variable = mu
    chemical_potential = mu_prop
  [../]
  [./soret]
    type = ADCHSoretMobility
    variable = c
    T = T
    mobility = thermal_mobility_prop
  [../]
  [./time]
    type = ADTimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./chemical_potential]
    type = ADPiecewiseLinearInterpolationMaterial
    property = mu_prop
    variable = c
    x = '0 1'
    y = '0 1'
  [../]
  [./chemical_mobility_prop]
    type = GenericConstantMaterial
    prop_names = chemical_mobility_prop
    prop_values = 0.1
  [../]
  [./thermal_mobility_prop]
    type = GenericConstantMaterial
    prop_names = thermal_mobility_prop
    prop_values = -20
  [../]
[]

[BCs]
  [./leftc]
    type = DirichletBC
    variable = c
    boundary = left
    value = 0
  [../]
  [./rightc]
    type = DirichletBC
    variable = c
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           2'
  dt = 0.1
  num_steps = 20
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/chem05.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Dissolution with no temperature dependence, with one primary variable = 0 and stoichiometry > 1
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.0
  [../]
  [./b]
    initial_condition = 0.2
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1.234
  [../]
  [./ini_sec_conc]
    initial_condition = 0.222
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1E5
    stoichiometry = 2
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 2.2E5
    stoichiometry = 3
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '0.5 0.8'
    reactions = '2 3'
    specific_reactive_surface_area = -44.4E-2
    kinetic_rate_constant = 0.678
    activation_energy = 4.4
    molar_volume = 3.3
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = 1.1
    eta_exponent = 1.2
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_sec_conc
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform5.i

# Plastic deformation, shear failure
# With Young = 10, poisson=0.25 (Lame lambda=4, mu=4)
# applying the following
# deformation to the zmax surface of a unit cube:
# disp_x = 8*t
# disp_y = 6*t
# disp_z = 5*t/6
# should yield trial stress:
# stress_zz = 10*t
# stress_zx = 32*t
# stress_zy = 24*t (so q_trial = 40*t)
# Use tan(friction_angle) = 0.5 and tan(dilation_angle) = 1/6, and cohesion=20,
# the system should return to p=0, q=20, ie stress_zz=0, stress_xz=16,
# stress_yz=12 on the first time step (t=1)
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 8*t
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 6*t
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 5*t/6
  [../]
[]

[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 20
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.166666666667
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '4 4'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform5
  csv = true
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test4nstt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4tt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.09
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.09
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test4nstt_out
  exodus = true
[]

modules/combined/test/tests/mortar_tm/2d/ad_frictionless_sec/finite_rr.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_rr'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
    extra_vector_tags = 'ref'
    use_automatic_differentiation = true
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
  nl_abs_tol = 1e-7
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/porous_flow/test/tests/chemistry/except16.i

# Exception test
# Incorrect number of stoichiometry
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1
    stoichiometry = '2 3'
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 1
    stoichiometry = 3
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    reactions = '2 3'
    specific_reactive_surface_area = 1.0
    kinetic_rate_constant = 1.0e-8
    activation_energy = 1.5e4
    molar_volume = 1
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/tensor_mechanics/test/tests/global_strain/global_strain_action.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 2
    ny = 2
    nz = 2
    xmin = -0.5
    xmax = 0.5
    ymin = -0.5
    ymax = 0.5
    zmin = -0.5
    zmax = 0.5
  []
  [cnode]
    type = ExtraNodesetGenerator
    coord = '0 -0.5 0'
    new_boundary = 100
    input = generated_mesh
  []
[]

[GlobalParams]
  displacements = 'u_x u_y u_z'
  block = 0
[]

[Variables]
  [./global_strain]
    order = SIXTH
    family = SCALAR
  [../]
[]

[Modules]
  [./TensorMechanics]
    # Master action for generating the tensor mechanics kernels, variables,
    # strain calculation material, and the auxilliary system for visualization
    [./Master]
      [./stress_div]
        strain = SMALL
        add_variables = true
        global_strain = global_strain #global strain contribution
        generate_output = 'strain_xx strain_xy strain_yy stress_xx stress_xy
                           stress_yy vonmises_stress'
      [../]
    [../]
    # GlobalStrain action for generating the objects associated with the global
    # strain calculation and associated displacement visualization
    [./GlobalStrain]
      [./global_strain]
        scalar_global_strain = global_strain
        displacements = 'u_x u_y u_z'
        auxiliary_displacements = 'disp_x disp_y disp_z'
        global_displacements = 'ug_x ug_y ug_z'
      [../]
    [../]
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'z'
      variable = 'u_x u_y u_z'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = u_x
    value = 0
  [../]
  [./centerfix_z]
    type = DirichletBC
    boundary = 100
    variable = u_z
    value = 0
  [../]
  # applied displacement
  [./appl_y]
    type = DirichletBC
    boundary = top
    variable = u_y
    value = 0.033
  [../]
  [./fix_y]
    type = DirichletBC
    boundary = bottom
    variable = u_y
    value = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '7 0.33'
    fill_method = symmetric_isotropic_E_nu
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  line_search = basic

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  l_max_its = 30
  nl_max_its = 12

  l_tol = 1.0e-4

  nl_rel_tol = 1.0e-6
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/solid_mechanics_basic/sm/crack_propagation_2d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
  use_crack_growth_increment = true
  crack_growth_increment = 0.2
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 11
  ny = 11
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '1.0  0.5  0.7  0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./xfem_marker_uo]
    type = XFEMMaterialTensorMarkerUserObject
    execute_on = timestep_end
    tensor = stress
    quantity = MaxPrincipal
    threshold = 5e+1
    average = true
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0  50   100'
    y='0  0.02 0.1'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./topx]
    type = DirichletBC
    boundary = top
    variable = disp_x
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_y
    function = pull
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    formulation = NonlinearPlaneStrain
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-9

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.0
  num_steps = 5000

  max_xfem_update = 1
[]

[Outputs]
  file_base = crack_propagation_2d_out
  exodus = true
  execute_on = timestep_end
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/tensor_mechanics/test/tests/global_strain/global_strain_disp.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 2
    ny = 2
    nz = 2
    xmin = -0.5
    xmax = 0.5
    ymin = -0.5
    ymax = 0.5
    zmin = -0.5
    zmax = 0.5
  []
  [cnode]
    type = ExtraNodesetGenerator
    coord = '0 -0.5 0'
    new_boundary = 100
    input = generated_mesh
  []
[]

[Variables]
  [./u_x]
  [../]
  [./u_y]
  [../]
  [./u_z]
  [../]
  [./global_strain]
    order = SIXTH
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./s00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./s11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e11]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = GlobalDisplacementAux
    variable = disp_x
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 0
  [../]
  [./disp_y]
    type = GlobalDisplacementAux
    variable = disp_y
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 1
  [../]
  [./disp_z]
    type = GlobalDisplacementAux
    variable = disp_z
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 2
  [../]
  [./s00]
    type = RankTwoAux
    variable = s00
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./s11]
    type = RankTwoAux
    variable = s11
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
  [../]
  [./e00]
    type = RankTwoAux
    variable = e00
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 0
  [../]
  [./e11]
    type = RankTwoAux
    variable = e11
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
  [../]
[]

[GlobalParams]
  displacements = 'u_x u_y u_z'
  block = 0
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[ScalarKernels]
  [./global_strain]
    type = GlobalStrain
    variable = global_strain
    global_strain_uo = global_strain_uo
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'z'
      variable = 'u_x u_y u_z'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = u_x
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    boundary = bottom
    variable = u_y
    value = 0
  [../]
  [./centerfix_z]
    type = DirichletBC
    boundary = 100
    variable = u_z
    value = 0
  [../]
  [./appl_y]
    type = DirichletBC
    boundary = top
    variable = u_y
    value = 0.033
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '7 0.33'
    fill_method = symmetric_isotropic_E_nu
  [../]
  [./strain]
    type = ComputeSmallStrain
    global_strain = global_strain
  [../]
  [./global_strain]
    type = ComputeGlobalStrain
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[UserObjects]
  [./global_strain_uo]
    type = GlobalStrainUserObject
    execute_on = 'Initial Linear Nonlinear'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  line_search = basic

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  l_max_its = 30
  nl_max_its = 12

  l_tol = 1.0e-4

  nl_rel_tol = 1.0e-6
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_3/brick3_template1.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick3_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_x
  [../]
  [./disp_x33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_x
  [../]
  [./disp_y28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_y
  [../]
  [./disp_y33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x28 disp_y28 disp_x33 disp_y33 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

test/tests/outputs/displaced/displaced_adapt_test.i

# Adaptivity on displaced problem
# - testing initial_refinement and adaptivity as well
#
# variables:
# - u and v_aux are used for displacing the problem
# - v is used to get some refinements
#

[Mesh]
  dim = 2
  file = square.e
  uniform_refine = 3
  displacements = 'u aux_v'
[]

[Functions]
  [./aux_v_fn]
    type = ParsedFunction
    value = x*(y-0.5)/5
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'udiff uie vdiff vconv vie'

  [./udiff]
    type = Diffusion
    variable = u
  [../]

  [./uie]
    type = TimeDerivative
    variable = u
  [../]

  [./vdiff]
    type = Diffusion
    variable = v
  [../]

  [./vconv]
    type = Convection
    variable = v
    velocity = '-10 1 0'
  [../]

  [./vie]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  active = 'uleft uright vleft vright'

  [./uleft]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./uright]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 0.1
  [../]

  [./vleft]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 1
  [../]

  [./vright]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 0
  [../]
[]

[AuxVariables]
  [./aux_v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./aux_k_1]
    type = FunctionAux
    variable = aux_v
    function = aux_v_fn
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  start_time = 0.0
  num_steps = 2
  dt = .1

  [./Adaptivity]
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    use_displaced = true
  [../]
[]

modules/richards/test/tests/buckley_leverett/bl20_lumped_fu.i

# two-phase version
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 30
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '0.1 0.5 0.5 1 2  4'
    x = '0   0.1 1   5 40 42'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E6
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./w_aux_seff]
  [../]
[]



[Kernels]
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
[]

[AuxKernels]
  [./w_aux_seff_auxk]
    type = RichardsSeffAux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
    variable = w_aux_seff
  [../]
[]


[ICs]
  [./water_ic]
    type = FunctionIC
    variable = pwater
    function = initial_water
  [../]
  [./gas_ic]
    type = FunctionIC
    variable = pgas
    function = initial_gas
  [../]
[]

[BCs]
  [./left_w]
    type = DirichletBC
    variable = pwater
    boundary = left
    value = 1E6
  [../]
  [./left_g]
    type = DirichletBC
    variable = pgas
    boundary = left
    value = 1000
  [../]
  [./right_w]
    type = DirichletBC
    variable = pwater
    boundary = right
    value = -300000
  [../]
  [./right_g]
    type = DirichletBC
    variable = pgas
    boundary = right
    value = 0
  [../]
[]


[Functions]
  [./initial_water]
    type = ParsedFunction
    value = 1000000*(1-min(x/5,1))-if(x<5,0,300000)
  [../]
  [./initial_gas]
    type = ParsedFunction
    value = 1000
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    viscosity = '1E-3 1E-6'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'standard'

  [./bounded]
  # must use --use-petsc-dm command line argument
    type = SMP
    full = true
    petsc_options_iname = '-snes_type -pc_factor_shift_type'
    petsc_options_value = 'vinewtonssls nonzero'
  [../]

  [./standard]
    type = SMP
    full = true
    petsc_options_iname = '-pc_factor_shift_type'
    petsc_options_value = 'nonzero'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 50

  nl_rel_tol = 1.e-9
  nl_max_its = 10

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = bl20_lumped_fu
  execute_on = 'initial timestep_end final'
  interval = 100000
  exodus = true
  hide = pgas
  [./console_out]
    type = Console
    interval = 1
  [../]
[]

modules/phase_field/test/tests/rigidbodymotion/grain_motion2.i

# test file for applyting advection term and observing rigid body motion of grains
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 15
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vadvx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vadvy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./centroids]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    args = eta
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = eta
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
  [./eta_dot]
    type = TimeDerivative
    variable = eta
  [../]
  [./vadv_eta]
    type = SingleGrainRigidBodyMotion
    variable = eta
    c = c
    v = eta
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
  [./acint_eta]
    type = ACInterface
    variable = eta
    mob_name = M
    args = c
    kappa_name = kappa_eta
  [../]
  [./acbulk_eta]
    type = AllenCahn
    variable = eta
    mob_name = M
    f_name = F
    args = c
  [../]
[]

[AuxKernels]
  [./vadv_x]
    type = GrainAdvectionAux
    component = x
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
    variable = vadvx
  [../]
  [./vadv_y]
    type = GrainAdvectionAux
    component = y
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
    variable = vadvy
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_center
    field_display = UNIQUE_REGION
    execute_on = 'initial timestep_begin'
  [../]
  [./centroids]
    type = FeatureFloodCountAux
    variable = centroids
    execute_on = 'initial timestep_begin'
    field_display = CENTROID
    flood_counter = grain_center
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '5.0  2.0      0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    args = 'c eta'
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+(c-eta)^2
    derivative_order = 2
  [../]
[]

[VectorPostprocessors]
  [./forces]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./grain_center]
    type = FauxGrainTracker
    variable = eta
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force]
    type = ConstantGrainForceAndTorque
    execute_on = 'initial linear nonlinear'
    force = '0.5 0.0 0.0 '
    torque = '0.0 0.0 10.0 '
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  nl_max_its = 30
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  dt = 0.5
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

[ICs]
  [./rect_c]
    y2 = 20.0
    y1 = 5.0
    inside = 1.0
    x2 = 30.0
    variable = c
    x1 = 10.0
    type = BoundingBoxIC
  [../]
  [./rect_eta]
    y2 = 20.0
    y1 = 5.0
    inside = 1.0
    x2 = 30.0
    variable = eta
    x1 = 10.0
    type = BoundingBoxIC
  [../]
[]

modules/xfem/test/tests/moving_interface/verification/1D_xy_homog1mat.i

# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality:                                   quasi-1D
# Coordinate System:                                      xy
# Material Numbers/Types:   homogeneous 1 material, 2 region
# Element Order:                                         1st
# Interface Characteristics: u independent, prescribed linear level set function
# Description:
#   A simple transient heat transfer problem in Cartesian coordinates designed
#   with the Method of Manufactured Solutions. This problem was developed to
#   verify XFEM performance in the presence of a moving interface for linear
#   element models that can be exactly evaluated by FEM/Moose. Both the
#   temperature solution and level set function are designed to be linear to
#   attempt to minimize error between the Moose/exact solution and XFEM results.
#   Thermal conductivity is a single, constant value at all points in the system.
# Results:
#   The temperature at the left boundary (x=0) exhibits the largest difference
#   between the FEM/Moose solution and XFEM results. We present the XFEM results
#   at this location with 10 digits of precision:
#     Time    Expected Temperature    XFEM Calculated Temperature
#      0.2                  440         440
#      0.4                  480         480.0000064
#      0.6                  520         520.0000323
#      0.8                  560         560.0000896
#      1.0                  600         600.0001870
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 1
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 0.5
  elem_type = QUAD4
[]

[XFEM]
  qrule = moment_fitting
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
    heal_always = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./heat_cond]
    type = MatDiffusion
    variable = u
    diffusivity = diffusion_coefficient
  [../]
  [./vol_heat_src]
    type = BodyForce
    variable = u
    function = src_func
  [../]
  [./mat_time_deriv]
    type = TestMatTimeDerivative
    variable = u
    mat_prop_value = rhoCp
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    geometric_cut_userobject = 'level_set_cut_uo'
    use_penalty = true
    alpha = 1e5
  [../]
[]

[Functions]
  [./src_func]
    type = ParsedFunction
    value = '10*(-200*x+200)'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = '1-(x-0.04)-0.2*t'
  [../]
  [./neumann_func]
    type = ParsedFunction
    value = '1.5*200*t'
  [../]
[]

[Materials]
  [./mat_time_deriv_prop]
    type = GenericConstantMaterial
    prop_names = 'rhoCp'
    prop_values = 10
  [../]
  [./therm_cond_prop]
    type = GenericConstantMaterial
    prop_names = 'diffusion_coefficient'
    prop_values = 1.5
  [../]
[]

[BCs]
  [./left_du]
    type = FunctionNeumannBC
    variable = u
    boundary = 'left'
    function = neumann_func
  [../]
  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 400
  [../]
[]

[ICs]
  [./u_ic]
    type = ConstantIC
    value = 400
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_tol = 1.0e-6
  nl_max_its = 15
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-9

  start_time = 0.0
  dt = 0.2
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = 'initial timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/plastic_heating/shear01.i

# Tensile heating, using capped weak-plane plasticity
# x_disp(z=1) = t
# totalstrain_xz = t
# with C_ijkl = 0.5 0.25
# stress_zx = stress_xz = 0.25*t, so q=0.25*t, but
# with cohesion=1 and tan(phi)=1: max(q)=1.  With tan(psi)=0,
# the plastic return is always to (p, q) = (0, 1),
# so plasticstrain_zx = max(t - 4, 0)
# heat_energy_rate = coeff * (t - 4) for t>4
# Heat capacity of rock = specific_heat_cap * density = 4
# So temperature of rock should be:
# (1 - porosity) * 4 * T = (1 - porosity) * coeff * (t - 4)
[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = -10
  xmax = 10
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
[]

[Variables]
  [./temperature]
  [../]
[]

[Kernels]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temperature
  [../]
  [./phe]
    type = PorousFlowPlasticHeatEnergy
    variable = temperature
    coeff = 8
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = FunctionAux
    variable = disp_x
    function = 'z*t'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = temperature
    number_fluid_phases = 0
    number_fluid_components = 0
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 1.0
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.0
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
[]

[Materials]
  [./rock_internal_energy]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 2
    density = 2
  [../]
  [./temp]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.7
  [../]
  [./phe]
    type = ComputePlasticHeatEnergy
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0.5 0.25'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-10
    perfect_guess = true
  [../]
[]

[Postprocessors]
  [./temp]
    type = PointValue
    point = '0 0 0'
    variable = temperature
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 10
[]

[Outputs]
  file_base = shear01
  csv = true
[]

modules/tensor_mechanics/test/tests/thermal_expansion_function/mean.i

# This test checks the thermal expansion calculated via a mean thermal expansion coefficient.
# The coefficient is selected so as to result in a 1e-4 strain in the x-axis, and to cross over
# from positive to negative strain.

[Mesh]
  [./gen]
    type = GeneratedMeshGenerator
    dim = 3
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    function = '1 + t'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeMeanThermalExpansionFunctionEigenstrain
    thermal_expansion_function = cte_func_mean
    thermal_expansion_function_reference_temperature = 1.2
    stress_free_temperature = 1.5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'T T_stress_free T_ref end_strain'
    vals = '2 1.5           1.2   1e-4'
    value = 'end_strain / (T - T_stress_free - end_strain * (T_stress_free - T_ref))'
  [../]
[]

[Postprocessors]
  [./disp_x_max]
    type = SideAverageValue
    variable = disp_x
    boundary = right
  [../]
  [./temp_avg]
    type = ElementAverageValue
    variable = temp
  [../]
[]

[Executioner]
  type = Transient

  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

modules/stochastic_tools/test/tests/transfers/sampler_postprocessor/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Postprocessors]
  [avg]
    type = AverageNodalVariableValue
    variable = u
  []
[]

[Outputs]
[]

modules/functional_expansion_tools/examples/2D_interface_no_material/sub.i

# Derived from the example '2D_interface' with the following differences:
#
#   1) No materials are used
[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0.4
  xmax = 2.4
  nx = 30
  ymin = 0.0
  ymax = 10.0
  ny = 20
[]

[Variables]
  [./s]
  [../]
[]

[Kernels]
  [./diff_s]
    type = Diffusion
    variable = s
  [../]
  [./time_diff_s]
    type = TimeDerivative
    variable = s
  [../]
[]

[ICs]
  [./start_s]
    type = ConstantIC
    value = 2
    variable = s
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = s
    boundary = bottom
    value = 0.1
  [../]
  [./interface_flux]
    type = FXFluxBC
    boundary = left
    variable = s
    function = FX_Basis_Flux_Sub
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '4'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
  [./FX_Basis_Flux_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '5'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXBoundaryValueUserObject
    function = FX_Basis_Value_Sub
    variable = s
    boundary = left
  [../]
  [./FX_Flux_UserObject_Sub]
    type = FXBoundaryFluxUserObject
    function = FX_Basis_Flux_Sub
    variable = s
    boundary = left
    diffusivity = 1.0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1.0
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

test/tests/multiapps/picard/function_dt_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  ymin = 0
  xmax = 1
  ymax = 1
  nx = 10
  ny = 10
[]

[Functions]
  [./v_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]

  [./dts]
    type = PiecewiseLinear
    x = '0.1  10'
    y = '0.1  10'
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./ufn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = v_fn
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10
  picard_max_its = 2
  start_time = 0
  num_steps = 3
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    app_type = MooseTestApp
    type = TransientMultiApp
    input_files = 'function_dt_sub.i'
    execute_on = timestep_end
    positions = '0 -1 0'
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub_app
    source_variable = u
    variable = v
  [../]
[]

modules/level_set/test/tests/reinitialization/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 8
  ny = 8
  uniform_refine = 3 #1/64
[]

[AuxVariables]
  [./vel_x]
    initial_condition = 1
  [../]
  [./vel_y]
    initial_condition = 1
  [../]
[]

[Variables]
  [./phi]
  [../]
[]

[Functions]
  [./phi_exact]
    type = LevelSetOlssonBubble
    epsilon = 0.05
    center = '0.5 0.5 0'
    radius = 0.15
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = phi
      auto_direction = 'x y'
    [../]
  [../]
[]

[ICs]
  [./phi_ic]
    type = FunctionIC
    function = phi_exact
    variable = phi
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = phi
  [../]

  [./advection]
    type = LevelSetAdvection
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  [../]
[]

[Postprocessors]

  [./area]
    type = LevelSetVolume
    threshold = 0.5
    variable = phi
    location = outside
    execute_on = 'initial timestep_end'
  [../]

  [./cfl]
    type = LevelSetCFLCondition
    velocity_x = vel_x
    velocity_y = vel_y
    execute_on = 'initial'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  start_time = 0
  end_time = 1
  nl_rel_tol = 1e-12
  scheme = crank-nicolson
  petsc_options_iname = '-pc_type -pc_sub_type'
  petsc_options_value = 'asm      ilu'
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = cfl
    scale = 1
  [../]

[]

[MultiApps]
  [./reinit]
    type = LevelSetReinitializationMultiApp
    input_files = 'reinit.i'
    execute_on = 'timestep_end'
  [../]
[]

[Transfers]
  [./to_sub]
    type = MultiAppCopyTransfer
    variable = phi
    source_variable = phi
    direction = to_multiapp
    multi_app = reinit
    execute_on = 'timestep_end'
  [../]

  [./to_sub_init]
    type = MultiAppCopyTransfer
    variable = phi_0
    source_variable = phi
    direction = to_multiapp
    multi_app = reinit
    execute_on = 'timestep_end'
  [../]

  [./from_sub]
    type = MultiAppCopyTransfer
    variable = phi
    source_variable = phi
    direction = from_multiapp
    multi_app = reinit
    execute_on = timestep_end
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/random1.i

# Using CappedMohrCoulomb with tensile failure only
# Plasticity models:
# Tensile strength = 1MPa
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 1234
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1234
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./tot_iters]
    type = ElementIntegralMaterialProperty
    mat_prop = plastic_NR_iterations
    outputs = console
  [../]
  [./raw_f0]
    type = ElementExtremeValue
    variable = f0
    outputs = console
  [../]
  [./raw_f1]
    type = ElementExtremeValue
    variable = f1
    outputs = console
  [../]
  [./raw_f2]
    type = ElementExtremeValue
    variable = f2
    outputs = console
  [../]
  [./iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./f0]
    type = FunctionValuePostprocessor
    function = should_be_zero0_fcn
  [../]
  [./f1]
    type = FunctionValuePostprocessor
    function = should_be_zero1_fcn
  [../]
  [./f2]
    type = FunctionValuePostprocessor
    function = should_be_zero2_fcn
  [../]
[]

[Functions]
  [./should_be_zero0_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f0'
  [../]
  [./should_be_zero1_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f1'
  [../]
  [./should_be_zero2_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f2'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E6
    value_residual = 0
    internal_limit = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E12
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E12
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 1.3E9'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 1E5
    max_NR_iterations = 100
    yield_function_tol = 1.0E-1
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random1
  csv = true
[]

test/tests/mesh_modifiers/subdomain_bounding_box/subdomain_bounding_box_inside.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 1
  ymax = 1
  uniform_refine = 2
[]

[MeshModifiers]
  [./subdomains]
    type = SubdomainBoundingBox
    bottom_left = '0.1 0.1 0'
    block_id = 1
    top_right = '0.9 0.9 0'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = MatCoefDiffusion
    variable = u
    conductivity = 'k'
    block = '0 1'
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./outside]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'k'
    prop_values = 1
  [../]
  [./inside]
    type = GenericConstantMaterial
    block = 1
    prop_names = 'k'
    prop_values = 0.1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/gap_heat_transfer_radiation/gap_heat_transfer_radiation_test.i

#
# 1-D Gap Heat Transfer Test without mechanics
#
# This test exercises 1-D gap heat transfer for a helium-filled gap including radiation.
#
# The mesh consists of two element blocks containing one element each.  Each
#   element is a unit cube.  They sit next to one another with a unit between them.
#
# The conductivity of both blocks is set very large to achieve a uniform temperature
#  across each block. The temperature of the far left boundary
#  is ramped from 100 to 200 over one time unit, and then held fixed for an additional
#  time unit.  The temperature of the far right boundary is held fixed at 100.
#
# A simple analytical solution is possible for the heat flux between the blocks:
#
#  Flux = (T_left - T_right) * h_gap
#
#    where  h_gap = h_gas + h_cont + h_rad
#
# By setting the contact pressure, roughnesses, and jump distances to zero, the gap
#   conductance simplifies to:
#
#    h_gap = gapK/d_gap + sigma*Fe*(T_left^2 + T_right^2)*(T_left + T_right)
#
#      where Fe = 1/(1/eps_left + 1/eps_right - 1)
#            eps = emissivity
#
# For pure helium, BISON computes the gas conductivity as:
#
#  gapK(Tavg) = 2.639e-3*Tavg^0.7085
#
# For the test, the final (t=2) average gas temperature is (200 +100)/2 = 150,
#  giving gapK(150) = 0.09187557
#
# Assuming ems_left = ems_right = 0.5, Fe = 1/3
#
# The heat flux across the gap at that time is then:
#
#  Flux(2) = 100 * ((0.09187557/1.0) + (5.669e-8/3)*(200^2 + 100^2)*(200 + 100))
#          = 37.532557
#
# The flux post processors give 37.53255
#

[Mesh]
  file = gap_heat_transfer_radiation_test.e
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1'
    y = '200 200'
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 100
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]


[BCs]
  [./temp_far_left]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]

  [./temp_far_right]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[ThermalContact]
  [./gap]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2

    gap_conductivity = 0.09187557
    emissivity_1 = 0.5
    emissivity_2 = 0.5
  [../]
[]

[Materials]
  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 10000000.0
  [../]
  [./density]
    type = Density
    block = '1 2'
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  nl_abs_tol = 1e-6
  nl_rel_tol = 1e-10

  l_tol = 1e-3
  l_max_its = 100

  start_time = 0.0
  dt = 1
  end_time = 1.0
[]

[Postprocessors]
  [./temp_left]
    type = SideAverageValue
    boundary = 2
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./temp_right]
    type = SideAverageValue
    boundary = 3
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./flux_left]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
  [../]

  [./flux_right]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/kernels/conservative_advection/full_upwinding_1D.i

# ConservativeAdvection with upwinding_type = full
# Apply a velocity = (1, 0, 0) and see a pulse advect to the right
# Note that the pulse diffuses more than with no upwinding,
# but there are no overshoots and undershoots and that the
# center of the pulse at u=0.5 advects with the correct velocity
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [./u]
  [../]
[]

[BCs]
  [./u_injection_left]
    type = InflowBC
    boundary = left
    variable = u
    velocity = '1 0 0'
    inlet_conc = 1
  [../]
[]

[Kernels]
  [./udot]
    type = MassLumpedTimeDerivative
    variable = u
  [../]
  [./advection]
    type = ConservativeAdvection
    variable = u
    velocity = '1 0 0'
    upwinding_type = full
  [../]
[]

[Executioner]
  type = Transient
  solve_type = LINEAR
  dt = 0.1
  end_time = 1
  l_tol = 1E-14
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/flux_limited_TVD_advection/fltvd_1D_adaptivity.i

# Using Flux-Limited TVD Advection ala Kuzmin and Turek, with antidiffusion from superbee flux limiting
# 1D version with mesh adaptivity
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[Adaptivity]
  initial_steps = 1
  initial_marker = tracer_marker
  marker = tracer_marker
  max_h_level = 1
  [./Markers]
    [./tracer_marker]
      type = ValueRangeMarker
      variable = tracer
      lower_bound = 0.02
      upper_bound = 0.98
    [../]
  [../]
[]

[Variables]
  [./tracer]
  [../]
[]

[ICs]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass_dot]
    type = MassLumpedTimeDerivative
    variable = tracer
  [../]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = superbee
    u = tracer
    velocity = '0.1 0 0'
  [../]
[]

[BCs]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_tracer]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = right
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 11
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  nl_abs_tol = 1E-8
  nl_max_its = 500
  timestep_tolerance = 1E-3
[]

[Outputs]
  print_linear_residuals = false
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/time_steppers/iteration_adaptive/adapt_tstep_pps_lim.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmax = 5
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./timestep_fn]
    type = PiecewiseLinear
    x = '0.  40.'
    y = '10. 1. '
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 10
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = -1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  start_time = 0.0
  end_time = 40.0
  n_startup_steps = 2
  dtmax = 6.0
  [./TimeStepper]
    type = IterationAdaptiveDT
    optimal_iterations = 10
    timestep_limiting_postprocessor = timestep_pp
    dt = 1.0
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]

# Just use a simple postprocessor to test capability to limit the time step length to the postprocessor value
  [./timestep_pp]
    type = FunctionValuePostprocessor
    function = timestep_fn
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  checkpoint = true
[]

modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_first/finite_rr.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_rr'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    use_automatic_differentiation = true
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
    extra_vector_tags = 'ref'
  [../]
  [./plank]
    use_automatic_differentiation = true
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
    extra_vector_tags = 'ref'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ADComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
  nl_abs_tol = 1e-12
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

test/tests/controls/time_periods/multiapps/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '1. 0. 0.'
    input_files = sub.i
    execute_on = 'initial timestep_end'
    output_in_position = true
  [../]
[]

[Controls]
  [./multiapp]
    type = TimePeriod
    disable_objects = 'MultiApps::sub'
    start_time = '0'
    end_time = '0.25'
    execute_on = 'initial timestep_begin'
  [../]
[]

test/tests/outputs/iterative/iterative_vtk.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = VTK
    nonlinear_residual_dt_divisor = 100
    start_time = 1.8
    end_time = 1.85
    execute_on = 'nonlinear timestep_end'
  [../]
[]

modules/chemical_reactions/test/tests/jacobian/coupled_equilsub.i

# Test the Jacobian terms for the CoupledBEEquilibriumSub Kernel

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./pressure]
    type = RandomIC
    variable = pressure
    min = 1
    max = 5
  [../]
  [./a]
    type = RandomIC
    variable = a
    max = 1
    min = 0
  [../]
  [./b]
    type = RandomIC
    variable = b
    max = 1
    min = 0
  [../]
[]

[Kernels]
  [./diff]
    type = DarcyFluxPressure
    variable = pressure
  [../]
  [./diff_b]
    type = Diffusion
    variable = b
  [../]
  [./a]
    type = CoupledBEEquilibriumSub
    variable = a
    v = b
    log_k = 2
    weight = 2
    sto_v = 1.5
    sto_u = 2
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-4 1e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
[]

[Outputs]
  perf_graph = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

modules/phase_field/test/tests/MultiPhase/barrierfunctionmaterial.i

# This is a test of the BarrierFunctionMaterial option = HIGH

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  xmin = 0
  xmax = 20
  ymin = 0
  ymax = 20
  elem_type = QUAD4
[]

[Variables]
  [./eta]
  [../]
[]

[ICs]
  [./IC_eta]
    type = SmoothCircleIC
    variable = eta
    x1 = 10
    y1 = 10
    radius = 5
    invalue = 1
    outvalue = 0
    int_width = 1
  [../]
[]

[Kernels]
  [./eta_bulk]
    type = AllenCahn
    variable = eta
    f_name = 0
    mob_name = 1
  [../]
  [./eta_interface]
    type = ACInterface
    variable = eta
    kappa_name = 1
    mob_name = 1
  [../]

  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[Materials]
  [./barrier]
    type = BarrierFunctionMaterial
    eta = eta
    g_order = HIGH
    outputs = exodus
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  num_steps = 2
[]

[Problem]
  solve = false
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/dynamics/wave_1D/wave_hht.i

# Wave propogation in 1D using HHT time integration
#
# The test is for an 1D bar element of length 4m  fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the other end.
# alpha, beta and gamma are Newmark  time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel + K*((1+alpha)*disp-alpha*disp_old) = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# The displacement at the second, third and fourth node at t = 0.1 are
# -8.097405701570538350e-02, 2.113131879547342634e-02 and -5.182787688751439893e-03, respectively.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
[]

[Kernels]
  [./DynamicTensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    alpha = -0.3
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.3025
    gamma = 0.6
    alpha = -0.3
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.3025
    gamma = 0.6
    alpha = -0.3
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.3025
    gamma = 0.6
    alpha = -0.3
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.6
    execute_on = timestep_end
  [../]
[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
    type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = bottom
    function = displacement_bc
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1'
  [../]

[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 6.0
  l_tol = 1e-12
  nl_rel_tol = 1e-12
  dt = 0.1
[]


[Functions]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp_1]
    type = NodalVariableValue
    nodeid = 1
    variable = vel_y
  [../]
  [./disp_2]
    type = NodalVariableValue
    nodeid = 3
    variable = vel_y
  [../]
  [./disp_3]
    type = NodalVariableValue
    nodeid = 10
    variable = vel_y
  [../]
  [./disp_4]
    type = NodalVariableValue
    nodeid = 14
    variable = vel_y
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/notched_plastic_block/biaxial_smooth.i

# Uses a multi-smooted version of Mohr-Coulomb (via CappedMohrCoulombStressUpdate and ComputeMultipleInelasticStress) to simulate the following problem.
# A cubical block is notched around its equator.
# All of its outer surfaces have roller BCs, but the notched region is free to move as needed
# The block is initialised with a high hydrostatic tensile stress
# Without the notch, the BCs do not allow contraction of the block, and this stress configuration is admissible
# With the notch, however, the interior parts of the block are free to move in order to relieve stress, and this causes plastic failure
# The top surface is then pulled upwards (the bottom is fixed because of the roller BCs)
# This causes more failure
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 9
    ny = 9
    nz = 9
    xmin = 0
    xmax = 0.1
    ymin = 0
    ymax = 0.1
    zmin = 0
    zmax = 0.1
  []
  [block_to_remove_xmin]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 -0.01 0.045'
    top_right = '0.01 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = generated_mesh
  []
  [block_to_remove_xmax]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0.09 -0.01 0.045'
    top_right = '0.11 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_xmin
  []
  [block_to_remove_ymin]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 -0.01 0.045'
    top_right = '0.11 0.01 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_xmax
  []
  [block_to_remove_ymax]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 0.09 0.045'
    top_right = '0.11 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_ymin
  []
  [remove_block]
    type = BlockDeletionGenerator
    block_id = 1
    input = block_to_remove_ymax
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_zz'
    eigenstrain_names = ini_stress
  [../]
[]

[Postprocessors]
  [./uz]
    type = PointValue
    point = '0 0 0.1'
    use_displaced_mesh = false
    variable = disp_z
  [../]
  [./s_zz]
    type = ElementAverageValue
    use_displaced_mesh = false
    variable = stress_zz
  [../]
  [./num_res]
    type = NumResidualEvaluations
  [../]
  [./nr_its] # num_iters is the average number of NR iterations encountered per element in this timestep
    type = ElementAverageValue
    variable = num_iters
  [../]
  [./max_nr_its] # max_num_iters is the maximum number of NR iterations encountered in the element during the whole simulation
    type = ElementExtremeValue
    variable = max_num_iters
  [../]
  [./runtime]
    type = PerfGraphData
    data_type = TOTAL
    section_name = 'Root'
  [../]
[]

[BCs]
  # back=zmin, front=zmax, bottom=ymin, top=ymax, left=xmin, right=xmax
  [./xmin_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./xmax_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./ymin_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./ymax_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.0
  [../]
  [./zmin_zzero]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = '0'
  [../]
  [./zmax_disp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '1E-6*max(t,0)'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./num_iters]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./max_num_iters]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./num_iters_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = num_iters
  [../]
  [./max_num_iters_auxk]
    type = MaterialRealAux
    property = max_plastic_NR_iterations
    variable = max_num_iters
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 6
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E16
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 5E6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 10
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 16E9
    poissons_ratio = 0.25
  [../]
  [./mc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    smoothing_tol = 0.2E6
    yield_function_tol = 1E-5
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
  [./strain_from_initial_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6E6 0 0  0 6E6 0  0 0 6E6'
    eigenstrain_name = ini_stress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  start_time = -1
  end_time = 10
  dt = 1
  solve_type = NEWTON
  type = Transient

  l_tol = 1E-2
  nl_abs_tol = 1E-5
  nl_rel_tol = 1E-7
  l_max_its = 200
  nl_max_its = 400

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]


[Outputs]
  file_base = biaxial_smooth
  perf_graph = true
  exodus = false
  csv = true
[]

modules/phase_field/examples/rigidbodymotion/grain_motion_GT.i

# example showing grain motion due to applied force density on grains
[GlobalParams]
  var_name_base = eta
  op_num = 4
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 80
  ny = 40
  nz = 0
  xmin = 0.0
  xmax = 40.0
  ymin = 0.0
  ymax = 20.0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
  [../]
  [./w]
  [../]
  [./PolycrystalVariables]
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    args = 'eta0 eta1 eta2 eta3'
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = 'eta0 eta1 eta2 eta3'
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]

  [./RigidBodyMultiKernel]
    # Creates all of the necessary Allen Cahn kernels automatically
    c = c
    f_name = F
    mob_name = L
    kappa_name = kappa_eta
    grain_force = grain_force
    grain_volumes = grain_volumes
    grain_tracker_object = grain_center
  [../]
[]

[Functions]
  [./load_x]
    # Defines the force on the grains in the x-direction
    type = ParsedFunction
    value = 0.005*cos(x*pi/600)
  [../]
  [./load_y]
    # Defines the force on the grains in the y-direction
    type = ConstantFunction
    value = 0.002
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    L kappa_c  kappa_eta'
    prop_values = '4.5 60  250      4000'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    #args = 'c eta0 eta1 eta2 eta3'
    #constant_names = 'barr_height  cv_eq'
    #constant_expressions = '0.1          1.0e-2'
    #function = '16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
    #           +eta0*(1-eta0)*c+eta1*(1-eta1)*c
    #           +eta2*(1-eta2)*c+eta3*(1-eta3)*c'
    constant_names = 'A B'
    constant_expressions = '450 1.5'
    args = 'c eta0 eta1 eta2 eta3' #Must be changed as op_num changes. Copy/paste from line 4
    function = 'A*c^2*(1-c)^2+B*(c^2+6*(1-c)*(eta0^2+eta1^2+eta2^2+eta3^2)
                -4*(2-c)*(eta0^3+eta1^3+eta2^3+eta3^3)
                +3*(eta0^2+eta1^2+eta2^2+eta3^2)^2)'
    derivative_order = 2
  [../]
  #[./force_density]
  #  type = ForceDensityMaterial
  #  c = c
  #  etas = 'eta0 eta1 eta2 eta3'
  #[../]
  [./force_density]
    type = ExternalForceDensityMaterial
    c = c
    k = 10.0
    etas = 'eta0 eta1 eta2 eta3'
    force_x = load_x
    force_y = load_y
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./centroids]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    #var_name_base = eta
    #op_num = 4.0
    v = 'eta0 eta1 eta2 eta3'
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_center
    field_display = UNIQUE_REGION
    execute_on = timestep_begin
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_center
    field_display = VARIABLE_COLORING
    execute_on = timestep_begin
  [../]
  [./centroids]
    type = FeatureFloodCountAux
    variable = centroids
    execute_on = timestep_begin
    field_display = CENTROID
    flood_counter = grain_center
  [../]
[]

[ICs]
  [./ic_eta1]
    x_positions = '32.5 24.0'
    int_width = 1.0
    z_positions = '0 0'
    y_positions = '6.0 14.0'
    radii = '4.0 4.0'
    3D_spheres = false
    outvalue = 0
    variable = eta1
    invalue = 1
    type = SpecifiedSmoothCircleIC
    block = 0
  [../]
  [./multip]
    x_positions = '5.5 15.5 24.0 32.5 7.0 15.5 24.0 32.5'
    int_width = 1.0
    z_positions = '0 0'
    y_positions = '6.0 6.0 6.0 6.0 14.5 14.5 14.0 14.5'
    radii = '4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0'
    3D_spheres = false
    outvalue = 0.001
    variable = c
    invalue = 0.999
    type = SpecifiedSmoothCircleIC
    block = 0
  [../]
  [./ic_eta0]
    x_positions = '5.5 15.5'
    int_width = 1.0
    z_positions = '0 0'
    y_positions = '6.0 6.0'
    radii = '4.0 4.0'
    3D_spheres = false
    outvalue = 0.0
    variable = eta0
    invalue = 1.0
    type = SpecifiedSmoothCircleIC
    block = 0
  [../]
  [./ic_eta2]
    x_positions = '24.0 7.0'
    int_width = 1.0
    z_positions = '0 0'
    y_positions = '6.0 14.5 '
    radii = '4.0 4.0 '
    3D_spheres = false
    outvalue = 0.0
    variable = eta2
    invalue = 1.0
    type = SpecifiedSmoothCircleIC
    block = 0
  [../]
  [./ic_eta3]
    x_positions = '15.5 32.5'
    int_width = 1.0
    z_positions = '0 0'
    y_positions = '14.5 14.5'
    radii = '4.0 4.0'
    3D_spheres = false
    outvalue = 0.0
    variable = eta3
    invalue = 1.0
    type = SpecifiedSmoothCircleIC
    block = 0
  [../]
[]

[VectorPostprocessors]
  [./forces]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force]
    type = ComputeExternalGrainForceAndTorque
    c = c
    grain_data = grain_center
    force_density = force_density_ext
    etas = 'eta0 eta1 eta2 eta3'
    execute_on = 'initial linear nonlinear'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 20
  dt = 0.01
[]

[Outputs]
  exodus = true
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest8.i

# 2D, removal of a block containing a nodeset inside it
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0
  xmax = 5
  ymin = 0
  ymax = 5
[]

[MeshModifiers]
  [./SubdomainBoundingBox1]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '4 4 1'
  [../]
  [./interior_nodeset]
    type = BoundingBoxNodeSet
    new_boundary = interior_ns
    bottom_left = '2 2 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeleter
    block_id = 1
    depends_on = 'SubdomainBoundingBox1 interior_nodeset'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/simple_contact/simple_contact_rspherical.i

#
# This is similar to the patch test for 1D spherical elements with the
#   addition of a contact interface.
#
# The 1D mesh is pinned at x=0.  The displacement at the outer node is set to
#   -3e-3*X where X is the x-coordinate of that node.  That gives a strain of
#   -3e-3 for the x, y, and z directions.
#
# Young's modulus is 1e6, and Poisson's ratio is 0.25.  This gives:
#
# Stress xx, yy, zz = E/(1+nu)/(1-2nu)*strain*((1-nu) + nu + nu) = -6000
#

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]
  file = simple_contact_rspherical.e
  construct_side_list_from_node_list = true
[]

[GlobalParams]
  displacements = 'disp_x'
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '-3e-3*x'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz'
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '1 4'
    function = ur
  [../]
[]

[Contact]
  [./fred]
    master = 2
    slave = 3
    system = constraint
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2 3'
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2 3'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-11

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/contact/test/tests/mechanical-small-problem/frictionless-nodal-lm-mortar-disp.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  [./simple_mesh]
    type = FileMeshGenerator
    file = mesh.e
  [../]
  [./master]
    type = LowerDBlockFromSidesetGenerator
    input = simple_mesh
    sidesets = '2'
    new_block_id = '3'
  [../]
  [./slave]
    type = LowerDBlockFromSidesetGenerator
    input = master
    sidesets = '1'
    new_block_id = '4'
  [../]
[]

[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = 1
    master = 2
    variable = frictionless_normal_lm
    master_variable = disp_x
    disp_y = disp_y
  [../]
  [x]
    type = NormalMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '1'
    master_subdomain = '3'
    slave_subdomain = '4'
    variable = frictionless_normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [y]
    type = NormalMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '1'
    master_subdomain = '3'
    slave_subdomain = '4'
    variable = frictionless_normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
  [./frictionless_normal_lm]
    block = 4
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'outside_left'
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'outside_left'
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'outside_right'
    function = '-5e-3 * t'
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'outside_right'
    function = 0
  [../]
[]

[Kernels]
  [disp_x]
    type = Diffusion
    variable = disp_x
    block = '1 2'
  []
  [disp_y]
    type = Diffusion
    variable = disp_y
    block = '1 2'
  []
[]

[Debug]
  show_var_residual_norms = 1
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  solve_type = PJFNK
  type = Transient
  num_steps = 10
  dt = 1
  dtmin = 1
  petsc_options_iname = '-pc_type -snes_linesearch_type -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       basic                 NONZERO               1e-15'
[]

[Outputs]
  exodus = true
[]

[Postprocessors]
  [contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = '4'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/functional_expansion_tools/test/tests/standard_use/volume_coupled.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = Diffusion
    variable = m
  [../]
  [./time_diff_m]
    type = TimeDerivative
    variable = m
  [../]
  [./s_in]
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'left right'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = volume_sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

modules/xfem/test/tests/single_var_constraint_2d/stationary_jump_func.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.0'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = jump_func
    jump_flux = 0
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
[]

[Functions]
  [./jump_func]
    type = ParsedFunction
    value = '0.5'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/ad_cavity_pressure/3d.i

#
# Cavity Pressure Test
#
# This test is designed to compute an internal pressure based on
#   p = n * R * T / V
# where
#   p is the pressure
#   n is the amount of material in the volume (moles)
#   R is the universal gas constant
#   T is the temperature
#   V is the volume
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total
#   initial volume is 7.
# The test adjusts n, T, and V in the following way:
#   n => n0 + alpha * t
#   T => T0 + beta * t
#   V => V0 + gamma * t
# with
#   alpha = n0
#   beta = T0 / 2
#   gamma = - (0.003322259...) * V0
#   T0 = 240.54443866068704
#   V0 = 7
#   n0 = f(p0)
#   p0 = 100
#   R = 8.314472 J * K^(-1) * mol^(-1)
#
# So, n0 = p0 * V0 / R / T0 = 100 * 7 / 8.314472 / 240.544439
#        = 0.35
#
# The parameters combined at t = 1 gives p = 301.
#

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = 3d.e
[]

[Functions]
  [./displ_positive]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.0029069767441859684'
  [../]
  [./displ_negative]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 -0.0029069767441859684'
  [../]
  [./temp1]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1.5'
    scale_factor = 240.54443866068704
  [../]
  [./material_input_function]
    type = PiecewiseLinear
    x = '0    1'
    y = '0 0.35'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 240.54443866068704
  [../]
  [./material_input]
  [../]
[]

[AuxVariables]
  [./pressure_residual_x]
  [../]
  [./pressure_residual_y]
  [../]
  [./pressure_residual_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    use_automatic_differentiation = true
  [../]
  [./heat]
    type = ADDiffusion
    variable = temp
    use_displaced_mesh = true
  [../]
  [./material_input_dummy]
    type = ADDiffusion
    variable = material_input
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_xx
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_yy
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_zz
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
    variable = stress_xy
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 2
    variable = stress_yz
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 0
    variable = stress_zx
  [../]
[]

[BCs]
  [./no_x_exterior]
    type = DirichletBC
    variable = disp_x
    boundary = '7 8'
    value = 0.0
  [../]
  [./no_y_exterior]
    type = DirichletBC
    variable = disp_y
    boundary = '9 10'
    value = 0.0
  [../]
  [./no_z_exterior]
    type = DirichletBC
    variable = disp_z
    boundary = '11 12'
    value = 0.0
  [../]
  [./prescribed_left]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 13
    function = displ_positive
  [../]
  [./prescribed_right]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 14
    function = displ_negative
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '15 16'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '17 18'
    value = 0.0
  [../]
  [./no_x_interior]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]
  [./no_y_interior]
    type = DirichletBC
    variable = disp_y
    boundary = '3 4'
    value = 0.0
  [../]
  [./no_z_interior]
    type = DirichletBC
    variable = disp_z
    boundary = '5 6'
    value = 0.0
  [../]
  [./temperatureInterior]
    type = ADFunctionDirichletBC
    boundary = 100
    function = temp1
    variable = temp
  [../]
  [./MaterialInput]
    type = ADFunctionDirichletBC
    boundary = '100 13 14 15 16'
    function = material_input_function
    variable = material_input
  [../]
  [./CavityPressure]
    [./1]
      boundary = 100
      initial_pressure = 100
      material_input = materialInput
      R = 8.314472
      temperature = aveTempInterior
      volume = internalVolume
      startup_time = 0.5
      output = ppress
      save_in = 'pressure_residual_x pressure_residual_y pressure_residual_z'
      use_automatic_differentiation = true
    [../]
  [../]
[]

[Materials]
  [./elast_tensor1]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e1
    poissons_ratio = 0
    block = 1
  [../]
  [./strain1]
    type = ADComputeFiniteStrain
    block = 1
  [../]
  [./stress1]
    type = ADComputeFiniteStrainElasticStress
    block = 1
  [../]
  [./elast_tensor2]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0
    block = 2
  [../]
  [./strain2]
    type = ADComputeFiniteStrain
    block = 2
  [../]
  [./stress2]
    type = ADComputeFiniteStrainElasticStress
    block = 2
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  nl_rel_tol = 1e-12
  l_tol = 1e-12

  l_max_its = 20

  dt = 0.5
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 100
    execute_on = 'initial linear'
  [../]
  [./aveTempInterior]
    type = SideAverageValue
    boundary = 100
    variable = temp
    execute_on = 'initial linear'
  [../]
  [./materialInput]
    type = SideAverageValue
    boundary = '7 8 9 10 11 12'
    variable = material_input
    execute_on = linear
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/internal_side_jump/internal_side_jump.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  []
  [./box]
    input = gen
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0 0 0'
    top_right = '0.5 0.5 0'
    block_id = 1
  [../]
[]

[Variables]
  [./u]
    family = L2_LAGRANGE
    order = FIRST
  [../]
[]

[ICs]
  [./ic0]
    type = ConstantIC
    variable = u
    block = 0
    value = 4
  [../]
  [./ic1]
    type = ConstantIC
    variable = u
    block = 1
    value = 6
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[DGKernels]
  [./dgdiff]
    type = DGDiffusion
    variable = u
    sigma = 4
    epsilon = 1
  [../]
[]

[BCs]
  [./all]
    type = VacuumBC
    variable = u
    boundary = '0 1 2 3'
  [../]
[]

[Postprocessors]
  [./L2_norm]
    type = ElementL2Norm
    variable = u
  [../]
  [./jump]
    type = InternalSideJump
    variable = u
    execute_on = 'initial timestep_end'
  [../]
  [./jumpold]
    type = InternalSideJump
    variable = u
    implicit = false
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  nl_abs_tol = 1e-12
[]

[Outputs]
  csv = true
[]

modules/combined/examples/phase_field-mechanics/SimplePhaseTrans.i

#
# Martensitic transformation
# One structural order parameter (SOP) governed by AllenCahn Eqn.
# Chemical driving force described by Landau Polynomial
# Coupled with elasticity (Mechanics)
# Eigenstrain as a function of SOP
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 100
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 100

  elem_type = QUAD4
[]

[Variables]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 50
      y1 = 50
      radius = 10.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 5.0
    [../]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    generate_output = 'stress_xx stress_yy'
    eigenstrain_names = 'eigenstrain'
  [../]
[]

[Kernels]
  [./eta_bulk]
    type = AllenCahn
    variable = eta
    f_name = F
  [../]
  [./eta_interface]
    type = ACInterface
    variable = eta
    kappa_name = kappa_eta
  [../]
  [./time]
    type = TimeDerivative
    variable = eta
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'L kappa_eta'
    prop_values = '1 1'
  [../]

  [./chemical_free_energy]
    type = DerivativeParsedMaterial
    f_name = Fc
    args = 'eta'
    constant_names = 'A2 A3 A4'
    constant_expressions = '0.2 -12.6 12.4'
    function = A2/2*eta^2+A3/3*eta^3+A4/4*eta^4
    enable_jit = true
    derivative_order = 2
  [../]

  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '70 30 30 70 30 70 30 30 30'
    fill_method = symmetric9
  [../]

  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./var_dependence]
    type = DerivativeParsedMaterial
    function = eta
    args = 'eta'
    f_name = var_dep
    enable_jit = true
    derivative_order = 2
  [../]

  [./eigenstrain]
    type = ComputeVariableEigenstrain
    eigen_base = '0.1 0.1 0 0 0 0'
    prefactor = var_dep
    #outputs = exodus
    args = 'eta'
    eigenstrain_name = eigenstrain
  [../]

  [./elastic_free_energy]
    type = ElasticEnergyMaterial
    f_name = Fe
    args = 'eta'
    derivative_order = 2
  [../]

  [./free_energy]
    type = DerivativeSumMaterial
    f_name = F
    sum_materials = 'Fc Fe'
    args = 'eta'
    derivative_order = 2
  [../]
[]

[BCs]
  [./all_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'top bottom left right'
    value = 0
  [../]
  [./all_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'top bottom left right'
    value = 0
  [../]
[]

[Preconditioning]
  # active = ' '
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  # this gives best performance on 4 cores
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type  -sub_pc_type '
  petsc_options_value = 'asm       lu'

  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10
  start_time = 0.0
  num_steps = 10

  [./TimeStepper]
    type = IterationAdaptiveDT
    optimal_iterations = 9
    iteration_window = 2
    growth_factor = 1.1
    cutback_factor = 0.75
    dt = 0.3
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform6.i

# apply repeated stretches in z direction, and smaller stretches in the x and y directions
# so that sigma_II = sigma_III,
# which means that lode angle = -30deg.
# The allows yield surface in meridional plane to be mapped out
# Using cap smoothing

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.9E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.9E-6*y*sin(t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 50
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0
    value_residual = 0.8726646 # 50deg
    rate = 3000.0
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    tip_scheme = cap
    mc_tip_smoother = 0
    cap_start = 3
    cap_rate = 0.8
    mc_edge_smoother = 20
    yield_function_tolerance = 1E-8
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 30
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform6
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/postprocessors/num_adaptivity_cycles/num_adaptivity_cycles.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 1

  solve_type = 'PJFNK'

[]

[Adaptivity]
  cycles_per_step = 1
  marker = box
  max_h_level = 2
  initial_steps = 4
  initial_marker = initial_box
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = dont_mark
      type = BoxMarker
    [../]
    [./initial_box]
      type = BoxMarker
      bottom_left = '0.8 0.1 0'
      top_right = '0.9 0.2 0'
      inside = refine
      outside = dont_mark
    [../]
  [../]
[]

[Postprocessors]
  [./adaptivity_cycles]
    type = NumAdaptivityCycles
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  csv = true
[]

modules/xfem/test/tests/moving_interface/phase_transition.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 11
  ny = 1
  xmin = 0
  xmax = 2
  ymin = 0
  ymax = 1
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./velocity]
    type = XFEMPhaseTransitionMovingInterfaceVelocity
    diffusivity_at_positive_level_set = 5
    diffusivity_at_negative_level_set = 1
    equilibrium_concentration_jump = 1
    value_at_interface_uo = value_uo
  [../]
  [./value_uo]
    type = PointValueAtXFEMInterface
    variable = 'u'
    geometric_cut_userobject = 'moving_line_segments'
    execute_on = 'nonlinear'
    level_set_var = ls
  [../]
  [./moving_line_segments]
    type = MovingLineSegmentCutSetUserObject
    cut_data = '0.5 0 0.5 1.0 0 0'
    heal_always = true
    interface_velocity = velocity
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./ic_u]
    type = FunctionIC
    variable = u
    function = 'if(x<0.51, 2, 1)'
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Constraints]
  [./u_constraint]
    type = XFEMEqualValueAtInterface
    geometric_cut_userobject = 'moving_line_segments'
    use_displaced_mesh = false
    variable = u
    value = 2
    alpha = 1e5
  [../]
[]

[Kernels]
  [./diff]
    type = MatDiffusion
    variable = u
    diffusivity = diffusion_coefficient
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./ls]
    type = LineSegmentLevelSetAux
    line_segment_cut_set_user_object = 'moving_line_segments'
    variable = ls
  [../]
[]

[Materials]
  [./diffusivity_A]
    type = GenericConstantMaterial
    prop_names = A_diffusion_coefficient
    prop_values = 5
  [../]
  [./diffusivity_B]
    type = GenericConstantMaterial
    prop_names = B_diffusion_coefficient
    prop_values = 1
  [../]
  [./diff_combined]
    type = LevelSetBiMaterialReal
    levelset_positive_base = 'A'
    levelset_negative_base = 'B'
    level_set_var = ls
    prop_name = diffusion_coefficient
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    value = 2
    boundary = 3
  [../]

  [./right_u]
    type = NeumannBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-11

  start_time = 0.0
  dt = 0.01
  num_steps = 4
  max_xfem_update = 1
[]


[Outputs]
  execute_on = timestep_end
  exodus = true
  perf_graph = true
  [./console]
    type = Console
    output_linear = true
  [../]
  csv = true
[]

modules/phase_field/test/tests/rigidbodymotion/grain_forcedensity.i

# test file for showing reaction forces between particles
[GlobalParams]
  var_name_base = eta
  op_num = 2
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 5
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 1
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./eta0]
  [../]
  [./eta1]
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    args = 'eta0 eta1'
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = 'eta0 eta1'
    grain_force = grain_force
    grain_tracker_object = grain_center
    grain_volumes = grain_volumes
  [../]
  [./eta0_dot]
    type = TimeDerivative
    variable = eta0
  [../]
  [./vadv_eta]
    type = SingleGrainRigidBodyMotion
    variable = eta0
    c = c
    v = 'eta0 eta1'
    grain_force = grain_force
    grain_tracker_object = grain_center
    grain_volumes = grain_volumes
    op_index = 0
  [../]
  [./acint_eta0]
    type = ACInterface
    variable = eta0
    mob_name = M
    #args = c
    kappa_name = kappa_eta
  [../]
  [./acbulk_eta0]
    type = AllenCahn
    variable = eta0
    mob_name = M
    f_name = F
    args = 'c eta1'
  [../]
  [./eta1_dot]
    type = TimeDerivative
    variable = eta1
  [../]
  [./vadv_eta1]
    type = SingleGrainRigidBodyMotion
    variable = eta1
    c = c
    v = 'eta0 eta1'
    op_index = 1
    grain_force = grain_force
    grain_tracker_object = grain_center
    grain_volumes = grain_volumes
  [../]
  [./acint_eta1]
    type = ACInterface
    variable = eta1
    mob_name = M
    #args = c
    kappa_name = kappa_eta
  [../]
  [./acbulk_eta1]
    type = AllenCahn
    variable = eta1
    mob_name = M
    f_name = F
    args = 'c eta0'
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '1.0  0.5      0.5'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'c eta0 eta1'
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+eta0*(1-eta0)*c+eta1*(1-eta1)*c
    derivative_order = 2
  [../]
  [./force_density]
    type = ForceDensityMaterial
    c = c
    etas ='eta0 eta1'
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  [./df00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df01]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df10]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./centroids]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    var_name_base = eta
    op_num = 2
    v = 'eta0 eta1'
  [../]
  [./df01]
    type = MaterialStdVectorRealGradientAux
    variable = df01
    index = 0
    component = 1
    property = force_density
  [../]
  [./df11]
    type = MaterialStdVectorRealGradientAux
    variable = df11
    index = 1
    component = 1
    property = force_density
  [../]
  [./df00]
    type = MaterialStdVectorRealGradientAux
    variable = df00
    index = 0
    component = 0
    property = force_density
  [../]
  [./df10]
    type = MaterialStdVectorRealGradientAux
    variable = df10
    index = 1
    component = 0
    property = force_density
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_center
    field_display = UNIQUE_REGION
    execute_on = timestep_begin
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_center
    field_display = VARIABLE_COLORING
    execute_on = timestep_begin
  [../]
  [./centroids]
    type = FeatureFloodCountAux
    variable = centroids
    execute_on = timestep_begin
    field_display = CENTROID
    flood_counter = grain_center
  [../]
[]

[ICs]
  [./ic_eta0]
    int_width = 1.0
    x1 = 20.0
    y1 = 0.0
    radius = 14.0
    outvalue = 0.0
    variable = eta0
    invalue = 1.0
    type = SmoothCircleIC
  [../]
  [./IC_eta1]
    int_width = 1.0
    x1 = 30.0
    y1 = 25.0
    radius = 14.0
    outvalue = 0.0
    variable = eta1
    invalue = 1.0
    type = SmoothCircleIC
  [../]
  [./ic_c]
    type = SpecifiedSmoothCircleIC
    invalue = 1.0
    outvalue = 0.1
    int_width = 1.0
    x_positions = '20.0 30.0 '
    z_positions = '0.0 0.0 '
    y_positions = '0.0 25.0 '
    radii = '14.0 14.0'
    3D_spheres = false
    variable = c
    block = 0
  [../]
[]

[VectorPostprocessors]
  [./forces]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force]
    type = ComputeGrainForceAndTorque
    execute_on = 'linear nonlinear'
    grain_data = grain_center
    force_density = force_density
    c = c
    etas = 'eta0 eta1'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/porous_flow/test/tests/dirackernels/bh03.i

# fully-saturated
# injection
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 0
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    variable = pp
    SumQuantityUO = borehole_total_outflow_mass
    point_file = bh03.bh
    function_of = pressure
    fluid_phase = 0
    bottom_p_or_t = 1E7
    unit_weight = '0 0 0'
    use_mobility = true
    character = -1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

[Outputs]
  file_base = bh03
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/peridynamics/test/tests/simple_tests/2D_regularD_variableH_BPD.i

# Test for bond-based peridynamic formulation
# for regular grid from generated mesh with varying bond constants

# Square plate with Dirichlet boundary conditions applied
# at the left, top and bottom edges

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1002
    value = 0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1000
    function = '-0.001*t'
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = BOND
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.33
  [../]

  [./force_density]
    type = ComputeSmallStrainVariableHorizonMaterialBPD
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  end_time = 1
[]

[Outputs]
  file_base = 2D_regularD_variableH_BPD
  exodus = true
[]

modules/phase_field/test/tests/phase_field_kernels/ACInterfaceStress.i

#
# Test the parsed function free enery Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 8
  ny = 8
  nz = 8
  xmax = 20
  ymax = 20
  zmax = 20
[]

[Variables]
  [./eta]
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0.0
      y1 = 0.0
      radius = 12.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 16.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]

  [./ACInterfaceStress]
    type = ACInterfaceStress
    variable = eta
    mob_name = 1
    stress = 2.7
  [../]
[]

[Materials]
  [./strain]
    type = GenericConstantRankTwoTensor
    tensor_name = elastic_strain
    tensor_values = '0.11 0.12 0.13 0.21 0.22 0.23 0.31 0.32 0.33'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'PJFNK'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 2
  dt = 1000
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_variable_value_sample_transfer/quad_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 0.01
  ymax = 0.01
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.00001
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./pp]
    type = Receiver
    default = -1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/picard/picard_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  parallel_type = replicated
  uniform_refine = 1
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_abs_tol = 1e-14
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = picard_sub.i
    clone_master_mesh = true
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

modules/phase_field/test/tests/phase_field_kernels/ADAllenCahn.i

#
# Test the forward automatic differentiation Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 12
  ymax = 12
  elem_type = QUAD4
[]

[Variables]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0.0
      y1 = 0.0
      radius = 6.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 3.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = ADTimeDerivative
    variable = eta
  [../]

  [./ACBulk]
    type = ADAllenCahn
    variable = eta
    f_name = F
  [../]

  [./ACInterface]
    type = ADACInterface
    variable = eta
    kappa_name = 1
    variable_L = false
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'L'
    prop_values = '1'
  [../]

  [./free_energy]
    type = ADTestDerivativeFunction
    function = F1
    f_name = F
    op = 'eta'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'
  num_steps = 2
  dt = 0.5
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/grain_tracker_test/grain_tracker_ebsd.i

[Mesh]
  type = EBSDMesh
  filename = 'test.txt'
[]

[GlobalParams]
  op_num = 4
  var_name_base = gr
[]

[UserObjects]
  [./ebsd_reader]
    type = EBSDReader
  [../]
  [./ebsd]
    type = PolycrystalEBSD
    coloring_algorithm = bt
    ebsd_reader = ebsd_reader
    output_adjacency_matrix = true
  [../]
  [./grain_tracker]
    type = GrainTracker
    threshold = 0.2
    connecting_threshold = 0.08
    flood_entity_type = ELEMENTAL
    compute_halo_maps = true # For displaying HALO fields
    polycrystal_ic_uo = ebsd
    execute_on = 'initial timestep_end'
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = ebsd
    [../]
  [../]
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  [./unique_grains]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./var_indices]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./ebsd_grains]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./phi1]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./halo0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halo1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halo2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halo3]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
  [../]
  [./grain_aux]
    type = EBSDReaderPointDataAux
    variable = ebsd_grains
    ebsd_reader = ebsd_reader
    data_name = 'feature_id'
    execute_on = 'initial timestep_end'
  [../]
  [./phi1]
    type = OutputEulerAngles
    euler_angle_provider = ebsd_reader
    output_euler_angle = phi1
    grain_tracker = grain_tracker
    variable = phi1
  [../]
    [./halo0]
    type = FeatureFloodCountAux
    variable = halo0
    map_index = 0
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo1]
    type = FeatureFloodCountAux
    variable = halo1
    map_index = 1
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo2]
    type = FeatureFloodCountAux
    variable = halo2
    map_index = 2
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo3]
    type = FeatureFloodCountAux
    variable = halo3
    map_index = 3
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
[]

[Materials]
  [./CuGrGr]
    type = GBEvolution
    T = 500 #K
    wGB = 0.75 #micron
    length_scale = 1.0e-6
    time_scale = 1.0e-4

    GBmob0 = 2.5e-6
    Q = 0.23
    GBenergy = 0.708
    molar_volume = 7.11e-6
  [../]
[]

[Postprocessors]
  [./n_nodes]
    type = NumNodes
    execute_on = timestep_end
  [../]

  [./DOFs]
    type = NumDOFs
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -pc_hypre_boomeramg_strong_threshold'
  petsc_options_value = 'hypre boomeramg 31 0.7'
  l_tol = 1.0e-4
  l_max_its = 20
  nl_rel_tol = 1.0e-9
  nl_max_its = 20
  start_time = 0.0
  num_steps = 1
  dt = 0.05
[]

[Outputs]
  execute_on = 'initial'
  exodus = true
  perf_graph = true
[]

modules/xfem/test/tests/pressure_bc/sm/2d_pressure_displaced_mesh.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = false
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.0 0.5 1.0 0.5'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = true
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1.0'
    y = '500 500'
  [../]
  [./bc_func_tx]
    type = ParsedFunction
    value = '0.5-(0.5-x)*cos(pi*t/2.0)-x'
  [../]
  [./bc_func_ty]
    type = ParsedFunction
    value = '(0.5-x)*sin(pi*t/2.0)+0.5'
  [../]
[]

[BCs]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    variable = disp_x
    value = 0.0
  [../]
  [./top_right_y]
    type = FunctionDirichletBC
    boundary = 2
    preset = false
    variable = disp_y
    function = bc_func_ty
  [../]
  [./top_right_x]
    type = FunctionDirichletBC
    boundary = 2
    preset = false
    variable = disp_x
    function = bc_func_tx
  [../]
[]

[DiracKernels]
  [./pressure_x]
    type = XFEMPressure
    variable = disp_x
    component = 0
    function = pressure
    use_displaced_mesh = true
  [../]
  [./pressure_y]
    type = XFEMPressure
    variable = disp_y
    component = 1
    function = pressure
    use_displaced_mesh = true
  [../]
[]

[Materials]
  [./elast]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    formulation = NonlinearPlaneStrain
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-14

# time control
  start_time = 0.0
  dt = 0.1
  end_time = 1.0
[]

[Outputs]
  file_base = 2d_pressure_displaced_mesh_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/solid_mechanics/test/tests/temperature_dependent_hardening/temp_dep_hardening.i

#
# This is a test of the piece-wise linear strain hardening model using the
# small strain formulation.  This test exercises the temperature-dependent
# hardening curve capability.
#
# Test procedure:
# 1. The element is pulled to and then beyond the yield stress for a given
# temperature.
# 2. The displacement is then constant while the temperature increases and
# the yield stress decreases.  This results in a lower stress with more
# plastic strain.
# 3. The temperature decreases beyond its original value giving a higher
# yield stress.  The displacement increases, causing increases stress to
# the new yield stress.
# 4. The temperature and yield stress are constant with increasing
# displacement giving a constant stress and more plastic strain.
#
# Plotting total_strain_yy on the x axis and stress_yy on the y axis shows
# the stress history in a clear way.
#
#  s |
#  t |            *****
#  r |           *
#  e |   *****  *
#  s |  *    * *
#  s | *     *
#    |*
#    +------------------
#           total strain
#
# The exact same problem was run in Abaqus with exactly the same result.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 500.0
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./total_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1     2    4    5    6'
    y = '0 0.025 0.05 0.05 0.06 0.085'
  [../]
  [./hf1]
    type = PiecewiseLinear
    x = '0.0  0.01 0.02 0.03 0.1'
    y = '5000 5030 5060 5090 5300'
  [../]
  [./hf2]
    type = PiecewiseLinear
    x = '0.0  0.01 0.02 0.03 0.1'
    y = '4000 4020 4040 4060 4200'
  [../]
  [./temp_hist]
    type = PiecewiseLinear
    x = '0   1   2   3   4'
    y = '500 500 500 600 400'
  [../]
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./temp_aux]
    type = FunctionAux
    variable = temp
    function = temp_hist
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./total_strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = total_strain_yy
    index = 1
  [../]

  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]

  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]

  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]
[]


[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 3
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 0
    value = 0.0
  [../]
[]

[Postprocessors]
  [./stress_yy_el]
    type = ElementalVariableValue
    variable = stress_yy
    elementid = 0
  [../]
[]

[Materials]
  [./elasticity]
    type = SolidModel
    formulation = Linear
    block = 0
    youngs_modulus = 2e5
    poissons_ratio = .3
    constitutive_model = temp_dep_hardening
  [../]

  [./temp_dep_hardening]
    type = IsotropicTempDepHardening
    block = 0
    hardening_functions = 'hf1 hf2'
    temperatures = '300.0 800.0'
    relative_tolerance = 1e-25
    absolute_tolerance = 1e-5
    temp = temp
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 6
  dt = 0.1
[]

[Outputs]
  csv = true
  [./out]
    type = Exodus
  [../]
[]

modules/solid_mechanics/test/tests/j_integral/j_integral_3d_mouth_dir.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#Crack direction is defined using the crack mouth coordinates.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = crack3d.e
  displacements = 'disp_x disp_y disp_z'
#  partitioner = centroid
#  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackMouth
  crack_mouth_boundary = 900
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  output_variable = 'disp_x'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

#  [./pin_x]
#    type = DirichletBC
#    variable = disp_x
#    boundary = 200
#    value = 0.0
#  [../]
#
#  [./pin_y]
#    type = DirichletBC
#    variable = disp_y
#    boundary = 200
#    value = 0.0
#  [../]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

 # [./nocrack_y]
 #   type = DirichletBC
 #   variable = disp_y
 #   boundary = 600
 #   value = 0.0
 # [../]

# [./no_x]
#   type = DirichletBC
#   variable = disp_x
#   boundary = 500
#   value = 0.0
# [../]
# [./no_y]
#   type = DirichletBC
#   variable = disp_y
#   boundary = 500
#   value = 0.0
# [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Postprocessors]
  [./disp_x_centercrack]
    type = CrackFrontData
    crack_front_definition = crackFrontDefinition
    variable = disp_x
    crack_front_point_index = 1
  [../]
[]

[Outputs]
  file_base = j_integral_3d_mouth_dir_out
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/initial_conditions/NestedBoundingBoxIC_2D.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  xmin = 0
  xmax = 400
  ny = 10
  ymin = 0
  ymax = 100
[]

[Problem]
  solve = false
[]

[Variables]
  [./c]
  [../]
[]

[ICs]
  [./c]
    type = NestedBoundingBoxIC
    variable = c
    smaller_coordinate_corners = '200 50 0 150 30 0 100 20 0'
    larger_coordinate_corners = '210 60 0 280 80 0 300 90 0'
    inside = '0.2 0.5 0.8'
    outside = 1
    int_width = 3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       ilu            nonzero'
  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-11

  num_steps = 1
  dt = 1e-5
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/actually_explicit_euler/actually_explicit_euler.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 'left'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 'right'
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.001
  l_tol = 1e-12

  [./TimeIntegrator]
    type = ActuallyExplicitEuler
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/kernels/block_kernel/block_kernel_test.i

[Mesh]
  file = rectangle.e
  uniform_refine = 1
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1.0
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./body_force]
    type = BodyForce
    variable = u
    block = 1
    value = 10
    function = 'x+y'
  [../]

  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  dt = 0.1
  num_steps = 10
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/batch_sampler_transfer/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = ADDiffusion
    variable = u
  []
  [time]
    type = ADTimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Postprocessors]
  [average]
    type = AverageNodalVariableValue
    variable = u
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.25
  solve_type = NEWTON
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Outputs]
[]

modules/combined/test/tests/mortar_tm/2d/ad_frictionless_sec/small.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'small'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
    use_automatic_differentiation = true
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
    block = 'plank block'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/porous_flow/test/tests/heterogeneous_materials/constant_poroperm3.i

# Assign porosity and permeability variables from constant AuxVariables read from the mesh
# to create a heterogeneous model

[Mesh]
  type = FileMesh
  file = 'gold/constant_poroperm2_out.e'
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 -10'
[]

[Variables]
  [./ppwater]
    initial_condition = 1e6
  [../]
[]

[AuxVariables]
  [./poro]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = poro
  [../]
  [./permxx]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permxx
  [../]
  [./permxy]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permxy
  [../]
  [./permxz]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permxz
  [../]
  [./permyx]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permyx
  [../]
  [./permyy]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permyy
  [../]
  [./permyz]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permyz
  [../]
  [./permzx]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permzx
  [../]
  [./permzy]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permzy
  [../]
  [./permzz]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permzz
  [../]
  [./poromat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxxmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxymat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxzmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyxmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyymat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyzmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzxmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzymat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzzmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./poromat]
    type = PorousFlowPropertyAux
    property = porosity
    variable = poromat
  [../]
  [./permxxmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permxxmat
    column = 0
    row = 0
  [../]
  [./permxymat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permxymat
    column = 1
    row = 0
  [../]
  [./permxzmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permxzmat
    column = 2
    row = 0
  [../]
  [./permyxmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permyxmat
    column = 0
    row = 1
  [../]
  [./permyymat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permyymat
    column = 1
    row = 1
  [../]
  [./permyzmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permyzmat
    column = 2
    row = 1
  [../]
  [./permzxmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permzxmat
    column = 0
    row = 2
  [../]
  [./permzymat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permzymat
    column = 1
    row = 2
  [../]
  [./permzzmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permzzmat
    column = 2
    row = 2
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    variable = ppwater
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      viscosity = 1e-3
      thermal_expansion = 0
      cv = 2
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = ppwater
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = poro
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConstFromVar
    perm_xx = permxx
    perm_xy = permxy
    perm_xz = permxz
    perm_yx = permyx
    perm_yy = permyy
    perm_yz = permyz
    perm_zx = permzx
    perm_zy = permzy
    perm_zz = permzz
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[Postprocessors]
  [./mass_ph0]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 100
  dt = 100
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  perf_graph = true
  file_base = constant_poroperm2_out
[]

modules/tensor_mechanics/test/tests/thermal_expansion_function/finite_const.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function has a constant value,
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# This version of the test uses finite deformation theory.
# The two models produce very similar results.  There are slight
# differences due to the large deformation treatment.

[Mesh]
  file = 'blocks.e'
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain1]
    type = ComputeMeanThermalExpansionFunctionEigenstrain
    block = 1
    thermal_expansion_function = cte_func_mean
    thermal_expansion_function_reference_temperature = 0.5
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
  [./thermal_expansion_strain2]
    type = ComputeInstantaneousThermalExpansionFunctionEigenstrain
    block = 2
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (t - tsf) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 1.0
               2 1.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/ring_contact/ring_contact.i

#
# A test of contact with quadratic (Hex20) elements
#
# A stiff ring is pushed into a soft base.  The base shows a circular impression.
#

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = false
[]

[Mesh]
  file = ring_contact.e
[]

[Functions]
  [./ring_y]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 1'
    scale_factor = -0.2
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e3
    tension_release = -1
    system = Constraint
  [../]
[]

[BCs]
  [./plane]
    type = DirichletBC
    variable = disp_z
    boundary = 10
    value = 0.0
  [../]

  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./ring_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./ring_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = ring_y
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff2]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e3
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]  # Materials

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'
  line_search = 'none'
  nl_rel_tol = 1.e-10
  l_max_its = 100
  nl_max_its = 10
  dt = 0.1
  end_time = 0.5

  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/recharge_discharge/rd03.i

[Mesh]
  file = gold/rd02.e
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '2E4 1E6'
    x = '0 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1E3
    bulk_mod = 2E7
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.336
    al = 1.43E-4
  [../]
  [./RelPermPower]
    type = RichardsRelPermVG1
    scut = 0.99
    simm = 0.0
    m = 0.336
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E+0
  [../]
[]



[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_from_file_timestep = 2
    initial_from_file_var = pressure
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]




[BCs]
  active = 'fix_bot'
  [./fix_bot]
    type = DirichletBC
    variable = pressure
    boundary = 'left'
    value = 0.0
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.33
    mat_permeability = '0.295E-12 0 0  0 0.295E-12 0  0 0 0.295E-12'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1.01E-3
    gravity = '-10 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''

    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-13 1E-15 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 8.2944E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = rd03
  interval = 100000
  execute_on = 'initial timestep_end final'
  exodus = true
[]

modules/chemical_reactions/test/tests/solid_kinetics/calcite_dissolution.i

# Example of batch reaction of calcite (CaCO3) dissolution to form calcium (Ca++)
# and bicarbonate (HCO3-).
#
# The reaction network considered is as follows:
# Aqueous equilibrium reactions:
# a)  H+ + HCO3- = CO2(aq),             Keq = 10^(6.341)
# b)  HCO3- = H+ + CO3--,               Keq = 10^(-10.325)
# c)  Ca++ + HCO3- = H+ + CaCO3(aq),    Keq = 10^(-7.009)
# d)  Ca++ + HCO3- = CaHCO3+,           Keq = 10^(-0.653)
# e)  Ca++ = H+ + CaOh+,                Keq = 10^(-12.85)
# f)  - H+ = OH-,                       Keq = 10^(-13.991)
#
# Kinetic reactions
# g)  Ca++ + HCO3- = H+ + CaCO3(s),     A = 0.461 m^2/L, k = 6.456542e-2 mol/m^2 s,
#                                       Keq = 10^(1.8487)
#
# The primary chemical species are H+, HCO3- and Ca++.

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./ca++]
    initial_condition = 1.0e-5
  [../]
  [./h+]
    initial_condition = 1.0e-6
  [../]
  [./hco3-]
    initial_condition = 1.0e-5
  [../]
[]

[AuxVariables]
  [./caco3_s]
    initial_condition = 0.05
  [../]
  [./ph]
  [../]
[]

[AuxKernels]
  [./ph]
    type = PHAux
    h_conc = h+
    variable = ph
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = 'ca++ hco3- h+'
    secondary_species = 'co2_aq co3-- caco3_aq cahco3+ caoh+ oh-'
    reactions = 'h+ + hco3- = co2_aq 6.3447,
                 hco3- - h+ = co3-- -10.3288,
                 ca++ + hco3- - h+ = caco3_aq -7.0017,
                 ca++ + hco3- = cahco3+ -1.0467,
                 ca++ - h+ = caoh+ -12.85,
                 - h+ = oh- -13.9951'
  [../]
  [./SolidKineticReactions]
    primary_species = 'ca++ hco3- h+'
    kin_reactions = 'ca++ + hco3- - h+ = caco3_s'
    secondary_species = caco3_s
    log10_keq = 1.8487
    reference_temperature = 298.15
    system_temperature = 298.15
    gas_constant = 8.314
    specific_reactive_surface_area = 0.1
    kinetic_rate_constant = 6.456542e-7
    activation_energy = 1.5e4
  [../]
[]

[Kernels]
  [./ca++_ie]
    type = PrimaryTimeDerivative
    variable = ca++
  [../]
  [./h+_ie]
    type = PrimaryTimeDerivative
    variable = h+
  [../]
  [./hco3-_ie]
    type = PrimaryTimeDerivative
    variable = hco3-
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'porosity diffusivity'
    prop_values = '0.25 1e-9'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  end_time = 100

  dt = 10
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./h+]
    type = ElementIntegralVariablePostprocessor
    variable = h+
    execute_on = 'initial timestep_end'
  [../]
  [./ca++]
    type = ElementIntegralVariablePostprocessor
    variable = ca++
    execute_on = 'initial timestep_end'
  [../]
  [./hco3-]
    type = ElementIntegralVariablePostprocessor
    variable = hco3-
    execute_on = 'initial timestep_end'
  [../]
  [./co2_aq]
    type = ElementIntegralVariablePostprocessor
    variable = co2_aq
    execute_on = 'initial timestep_end'
  [../]
  [./oh-]
    type = ElementIntegralVariablePostprocessor
    variable = oh-
    execute_on = 'initial timestep_end'
  [../]
  [./co3--]
    type = ElementIntegralVariablePostprocessor
    variable = co3--
    execute_on = 'initial timestep_end'
  [../]
  [./caco3_aq]
    type = ElementIntegralVariablePostprocessor
    variable = caco3_aq
    execute_on = 'initial timestep_end'
  [../]
  [./caco3_s]
    type = ElementIntegralVariablePostprocessor
    variable = caco3_s
    execute_on = 'initial timestep_end'
  [../]
  [./ph]
    type = ElementIntegralVariablePostprocessor
    variable = ph
    execute_on = 'initial timestep_end'
  [../]
  [./calcite_vf]
    type = TotalMineralVolumeFraction
    variable = caco3_s
    molar_volume = 36.934e-6
  [../]
[]

[Outputs]
  perf_graph = true
  csv = true
[]

modules/phase_field/test/tests/initial_conditions/circles_from_file_ic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 56
  nz = 0
  xmin = 0
  xmax = 200
  ymin = 0
  ymax = 112
  zmin = 0
  zmax = 0
[]

[Variables]
  [./c]
  [../]
[]

[ICs]
  [./IC_c]
    type = SmoothCircleFromFileIC
    file_name = 'circles.txt'
    invalue = 1
    outvalue = 0
    variable = c
    int_width = 6
  [../]
[]

[Kernels]
  [./c_dot]
    type = TimeDerivative
    variable = c
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  num_steps = 0
[]

[Outputs]
  exodus = true
  csv = false
[]

test/tests/controls/output/controllable_clear.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  elem_type = QUAD4
  uniform_refine = 4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[DiracKernels]
  [./test_object]
    type = MaterialPointSource
    point = '0.5 0.5 0'
    variable = u
  [../]
[]

[Materials]
  [./mat]
    type = GenericConstantMaterial
    prop_names = 'matp'
    prop_values = '1'
    block = 0
  [../]
[]

[Postprocessors]
  [./test_object]
    type = FunctionValuePostprocessor
    function = '2*(x+y)'
    point = '0.5 0.5 0'
  [../]
  [./other_point_test_object]
    type = FunctionValuePostprocessor
    function = '3*(x+y)'
    point = '0.5 0.5 0'
  [../]
[]

[Outputs]
  controls = true
[]

[Controls]
  [./point_control]
    type = TestControl
    test_type = 'point'
    parameter = '*/*/point'
    execute_on = 'initial'
  [../]
[]

test/tests/functions/piecewise_multilinear/except1.i

# PiecewiseMultilinear function exception test
# Data file does not exist

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 2
  nx = 1
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./f]
  [../]
[]

[AuxKernels]
  [./f_auxK]
    type = FunctionAux
    variable = f
    function = except1_fcn
  [../]
[]


[Functions]
  [./except1_fcn]
    type = PiecewiseMultilinear
    data_file = except1.txt
  [../]
[]


[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = except1
  hide = dummy
  csv = true
[]

modules/peridynamics/test/tests/nodalkernels/penalty_dirichlet_old_value.i

#In order to compare the solution generated using PresetBC, the penalty was set to 1e10.
#Large penalty number should be used with caution.

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gfm]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -1.1
    xmax = 1.1
    ymin = -1.1
    ymax = 1.1
    nx = 11
    ny = 11
    elem_type = QUAD4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gfm
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./temp]
  [../]
[]

[AuxVariables]
  [./bond_status]
    initial_condition = 1
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConductionBPD
    variable = temp
  [../]
  [./source]
    type = HeatSourceBPD
    variable = temp
    power_density = '-4'
  [../]
[]

[Materials]
  [./thermal_material]
    type = ThermalConstantHorizonMaterialBPD
    thermal_conductivity = 1
    temperature = temp
  [../]
[]

[NodalKernels]
  [./bc_all]
    type = PenaltyDirichletOldValuePD
    variable = temp
    boundary = 'pd_nodes_top pd_nodes_left pd_nodes_right pd_nodes_bottom'
    penalty = 1e10
  [../]
[]

# [BCs]
#   [./fix]
#     type = DirichletBC
#     variable = temp
#     value = 0
#     boundary = 'pd_nodes_top pd_nodes_left pd_nodes_right pd_nodes_bottom'
#   [../]
# []

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0
  end_time = 1
  nl_rel_tol = 1e-14
[]

[Outputs]
  file_base = preset_bc_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/finite_strain_jacobian/bending_jacobian.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 10
    ymin = 0
    ymax = 2
    nx = 10
    ny = 2
    elem_type = QUAD4
  []
  [corner]
    type = ExtraNodesetGenerator
    new_boundary = 101
    coord = '0 0'
    input = generated_mesh
  []
  [side]
    type = ExtraNodesetGenerator
    new_boundary = 102
    coord = '10 0'
    input = corner
  []
  [mid]
    type = ExtraNodesetGenerator
    new_boundary = 103
    coord = '5 2'
    input = side
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    use_finite_deform_jacobian = true
    volumetric_locking_correction = false
  [../]
[]

[Materials]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric9
    C_ijkl = '1.684e5 0.176e5 0.176e5 1.684e5 0.176e5 1.684e5 0.754e5 0.754e5 0.754e5'
  [../]
[]

[BCs]
 [./fix_corner_x]
   type = DirichletBC
   variable = disp_x
   boundary = 101
   value = 0
 [../]
 [./fix_corner_y]
   type = DirichletBC
   variable = disp_y
   boundary = 101
   value = 0
 [../]
 [./fix_y]
   type = DirichletBC
   variable = disp_y
   boundary = 102
   value = 0
 [../]
 [./move_y]
   type = FunctionDirichletBC
   variable = disp_y
   boundary = 103
   function = '-t'
 [../]
[]

[Executioner]
  type = Transient

  solve_type = NEWTON
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_max_its = 10

  l_tol  = 1e-4
  l_max_its = 50

  dt = 0.1
  dtmin = 0.1

  num_steps = 2
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/corner_nodes_cut/corner_node_cut_twice.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '-0.0 0.3 1.0 0.7'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
  [../]
[]

[BCs]
  [./top_x]
    type = DirichletBC
    boundary = 2
    variable = disp_x
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.1
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = -0.1
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-9

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/solid_mechanics/test/tests/j_integral/j_integral_3d.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = crack3d.e
  displacements = 'disp_x disp_y disp_z'
#  partitioner = centroid
#  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  output_variable = 'disp_x'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

#  [./pin_x]
#    type = DirichletBC
#    variable = disp_x
#    boundary = 200
#    value = 0.0
#  [../]
#
#  [./pin_y]
#    type = DirichletBC
#    variable = disp_y
#    boundary = 200
#    value = 0.0
#  [../]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

 # [./nocrack_y]
 #   type = DirichletBC
 #   variable = disp_y
 #   boundary = 600
 #   value = 0.0
 # [../]

# [./no_x]
#   type = DirichletBC
#   variable = disp_x
#   boundary = 500
#   value = 0.0
# [../]
# [./no_y]
#   type = DirichletBC
#   variable = disp_y
#   boundary = 500
#   value = 0.0
# [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Postprocessors]
  [./disp_x_centercrack]
    type = CrackFrontData
    crack_front_definition = crackFrontDefinition
    variable = disp_x
    crack_front_point_index = 1
  [../]
[]

[Outputs]
  file_base = j_integral_3d_out
  exodus = true
  csv = true
[]

test/tests/materials/stateful_prop/stateful_prop_spatial_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 10
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./prop1]
    order = SECOND
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./prop1_output]
    type = MaterialRealAux
    variable = prop1
    property = thermal_conductivity
  [../]
[]

[Kernels]
  [./heat]
    type = MatDiffusionTest
    variable = u
    prop_name = thermal_conductivity
  [../]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0.0
  [../]
  [./right]
    type = MTBC
    variable = u
    boundary = 1
    grad = 1.0
    prop_name = thermal_conductivity
  [../]
[]

[Materials]
  [./stateful]
    type = StatefulSpatialTest
    block = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  start_time = 0.0
  num_steps = 5
  dt = .1
[]

[Outputs]
  file_base = out_spatial
  [./out]
    type = Exodus
    elemental_as_nodal = true
    execute_elemental_on = none
  [../]
[]

test/tests/postprocessors/table_tolerance/table_tolerance_test.i

# This test verifies that the row tolerance for outputting and displaying postprocessors
# can be controlled via the new_row_tolerance parameter. Normally new rows are only added
# if they are above a given tolerance.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./aux]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./func]
    type = FunctionAux
    function = 'sin(x + 1e12*t)'
    variable = aux
    execute_on = timestep_begin
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20

  # Very small timestep size
  dt = 1e-13
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [./integral]
    type = ElementIntegralVariablePostprocessor
    variable = aux
  [../]
[]

[Problem]
  kernel_coverage_check = false
  solve = false
[]

[Outputs]
  exodus = false
  [./out]
    type = CSV
    new_row_tolerance = 1e-14
  [../]
  [./console]
    type = Console
    new_row_tolerance = 1e-14
  [../]
[]

modules/combined/test/tests/normalized_penalty/sm/normalized_penalty_sm.i

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Mesh]
  file = normalized_penalty.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Functions]
  [./left_x]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 0.02 0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    extra_vector_tags = 'ref'
  [../]
[]

[Contact]
  [./m3_s2]
    master = 3
    slave = 2
    penalty = 1e10
    normalize_penalty = true
    formulation = penalty
    tangential_tolerance = 1e-3
    system = Constraint
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./left_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = left_x
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2 3 4'
    value = 0.0
  [../]

  [./right]
    type = DirichletBC
    variable = disp_x
    boundary = '3 4'
    value = 0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = '1 2 3 4 1000'

    youngs_modulus = 3e8
    poissons_ratio = 0.0

  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-12
  nl_abs_tol = 5e-8

  l_max_its = 100
  nl_max_its = 20
  dt = 0.5
  num_steps = 4
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/grain_boundary_area/disc.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 100
  xmin = -1.5
  xmax = 1.5
  ymin = -1.5
  ymax = 1.5
[]

[GlobalParams]
  op_num = 1
  var_name_base = gr
[]

[Variables]
  [./gr0]
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0
      y1 = 0
      z1 = 0
      radius = 1.0
      int_width = 0.15
      invalue = 1
      outvalue = 0
    [../]
  [../]
[]

[Postprocessors]
  [./area]
    type = GrainBoundaryArea
    grains_per_side = 1
  [../]
[]

[Problem]
  kernel_coverage_check = false
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  csv = true
  execute_on = timestep_end
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_1/plane1_mu_0_2_pen.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane1_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = plane1_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = plane1_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/porous_flow/test/tests/jacobian/waterncg_twophase.i

# Tests correct calculation of properties derivatives in PorousFlowWaterNCG
# for conditions for two phases

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pgas]
  [../]
  [./z]
  [../]
[]

[ICs]
  [./pgas]
    type = RandomIC
    min = 1e5
    max = 5e5
    variable = pgas
  [../]
  [./z]
    type = RandomIC
    min = 0.01
    max = 0.06
    variable = z
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    variable = pgas
    fluid_component = 0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    variable = z
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e1
    pc_max = 1e4
  [../]
  [./fs]
    type = PorousFlowWaterNCG
    water_fp = water
    gas_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[AuxVariables]
  [./sgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./sgas]
    type = PorousFlowPropertyAux
    property = saturation
    phase = 1
    variable = sgas
  [../]
[]

[Postprocessors]
  [./sgas_min]
    type = ElementExtremeValue
    variable = sgas
    value_type = min
  [../]
  [./sgas_max]
    type = ElementExtremeValue
    variable = sgas
    value_type = max
  [../]
[]

modules/porous_flow/test/tests/actions/fullsat_brine_except3.i

# Check error when using PorousFlowFullySaturated action,
# not setting fp.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[GlobalParams]
  block = '0'
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[PorousFlowFullySaturated]
  coupling_type = ThermoHydro
  porepressure = pp
  temperature = temp
  dictator_name = dictator
[]

[Variables]
  [./pp]
    initial_condition = 20E6
  [../]
  [./temp]
    initial_condition = 323.15
  [../]
[]

[Kernels]
  # All provided by PorousFlowFullySaturated action
[]

[BCs]
  [./t_bdy]
    type = DirichletBC
    variable = temp
    boundary = 'left right'
    value = 323.15
  [../]
  [./p_bdy]
    type = DirichletBC
    variable = pp
    boundary = 'left right'
    value = 20E6
  [../]
[]

[Materials]
  # Thermal conductivity
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '3 0 0  0 3 0  0 0 3'
    wet_thermal_conductivity = '3 0 0  0 3 0  0 0 3'
  [../]

  # Specific heat capacity
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 850
    density = 2700
  [../]

  # Permeability
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-13 0 0  0 1E-13 0  0 0 1E-13'
  [../]

  # Porosity
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.3
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  file_base = fullsat_brine_except3
[]

modules/combined/test/tests/solid_mechanics/Time_integration/Newmark_time_integration/Newmark_test.i

# Test for  Newmark time integration
#
# The test is for an 1-D bar element of unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# beta and gamma are Newmark time integration parameters The equation
# of motion in terms of matrices is:
#
# M*accel + K*disp = P*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + Div Stress = P
#
# The first term on the left is evaluated using the Inertial force
# kernel The last term on the left is evaluated using StressDivergence
# Kernel The residual due to Pressure is evaluated using Pressure
# boundary condition
[GlobalParams]
  volumetric_locking_correction = false
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_yy strain_yy'
  []
[]

[Kernels]

  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
    boundary = bottom
    function = pressure
    factor = 1
    [../]
  [../]
[]

[Materials]
  [./elastic]
    type = ComputeIsotropicElasticityTensor
    block = '0'
    youngs_modulus = 210e+09
    poissons_ratio = 0
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
    block = '0'
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]
[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 2
  dtmax = 0.1
  dtmin = 0.1
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
  [./vel_ic]
    type = PiecewiseLinear
    x = '0.0 0.5 1.0'
    y = '0.1 0.1 0.1'
    scale_factor = 1
  [../]
[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
   [./disp]
     type = NodalMaxValue
     variable = disp_y
     boundary = bottom
   [../]
   [./vel]
     type = NodalMaxValue
     variable = vel_y
     boundary = bottom
   [../]
   [./accel]
     type = NodalMaxValue
     variable = accel_y
     boundary = bottom
   [../]
   [./stress_yy]
      type = ElementAverageValue
      variable = stress_yy
   [../]
   [./strain_yy]
      type = ElementAverageValue
      variable = strain_yy
   [../]

[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/desorption/desorption01.i

# Illustrates desorption works as planned.
#
# A mesh contains 3 elements in arranged in a line.
# The central element contains desorped fluid.
# This desorps to the nodes of that element.
#
# In the central element, of volume V, the following occurs.
# The initial porepressure=1, and concentration=1.
# The initial mass of fluid is
# V * (2 * porosity * density + (1 - porosity) * concentration)
# = V * 1.289547
# Notice the factor of "2" in the porespace contribution:
# it is because the porepressure is evaluated at nodes, so
# the nodes on the exterior of the centre_block have
# nodal-volume contributions from the elements not in centre_block.
#
# The mass-conservation equation reads
# 2 * porosity * density + (1 - porosity) * concentration = 1.289547
# and the desorption equation reads
# d( (1-porosity)C )/dt = - (1/tau)(C - dens_L * P / (P_L + P))
# where C = concentration, P = porepressure, P_L = Langmuir pressure
# dens_L = Langmuir density, tau = time constant.
# Using the mass-conservation equation in the desorption equation
# yields a nonlinear equation of P.  For dt=1, and the numerical values
# given below this yields
# P = 1.83697
# and
# C = 0.676616
# The desired result is achieved by MOOSE
[Mesh]
  type = FileMesh
  file = three_eles.e
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./conc]
    family = MONOMIAL
    order = CONSTANT
    block = centre_block
  [../]
[]

[ICs]
  [./p_ic]
    type = ConstantIC
    variable = pp
    value = 1.0
  [../]
  [./conc_ic]
    type = ConstantIC
    variable = conc
    value = 1.0
    block = centre_block
  [../]
[]

[Kernels]
  [./porespace_mass_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./desorped_mass_dot]
    type = PorousFlowDesorpedMassTimeDerivative
    block = centre_block
    conc_var = conc
    variable = pp
  [../]
  [./desorped_mass_dot_conc_var]
    type = PorousFlowDesorpedMassTimeDerivative
    block = centre_block
    conc_var = conc
    variable = conc
  [../]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    block = centre_block
    variable = conc
    pressure_var = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp conc'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      viscosity = 1
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./lang_stuff]
    type = LangmuirMaterial
    block = centre_block
    one_over_adsorption_time_const = 10.0
    one_over_desorption_time_const = 10.0
    langmuir_density = 1
    langmuir_pressure = 1
    pressure_var = pp
    conc_var = conc
  [../]

  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/cracking/cracking_exponential.i

#
# Test to exercise the exponential stress release
#
# Stress vs. strain should show a linear relationship until cracking,
#   an exponential stress release, a linear relationship back to zero
#   strain, a linear relationship with the original stiffness in
#   compression and then back to zero strain, a linear relationship
#   back to the exponential curve, and finally further exponential
#   stress release.
#

[Mesh]
  file = cracking_test.e
  displacements = 'disp_x disp_y disp_z'
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

[]

[AuxVariables]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Functions]
  [./displx]
    type = PiecewiseLinear
#   x = '0 1'
#   y = '0 .0035'
    x = '0 1       2  3      4 5       6'
    y = '0 0.00175 0 -0.0001 0 0.00175 0.0035'
  [../]
  [./disply]
    type = PiecewiseLinear
    x = '0 5 6'
    y = '0 0 .00175'
  [../]
  [./displz]
    type = PiecewiseLinear
    x = '0 2 3'
    y = '0 0 .0035'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]
  [./strain_xx]
    type = MaterialTensorAux
    variable = strain_xx
    tensor = total_strain
    index = 0
  [../]

  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    tensor = stress
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    variable = stress_zz
    tensor = stress
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    variable = stress_xy
    tensor = stress
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    variable = stress_yz
    tensor = stress
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    variable = stress_zx
    tensor = stress
    index = 5
  [../]
[]


[BCs]
  [./pullx]
    type = FunctionDirichletBC
    #type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = displx
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = '11 12'
    value = 0.0
  [../]

  [./move_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = '15 16'
    function = disply
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = '3'
    value = 0.0
  [../]
[]

[Materials]
  [./fred]
    type = Elastic
    block = 1
    youngs_modulus = 186.5e9
    poissons_ratio = .316
    cracking_stress = 119.3e6
    cracking_release = exponential

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    formulation = linear
  [../]
[]

[Postprocessors]
  [./strain_xx]
    type = ElementalVariableValue
    elementid = 0
    variable = strain_xx
  [../]
  [./stress_xx]
    type = ElementalVariableValue
    elementid = 0
    variable = stress_xx
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type'
  petsc_options_value = '101                lu'

  line_search = 'none'
  l_max_its = 100
  l_tol = 1e-6

  nl_max_its = 10
  nl_rel_tol = 1e-9

  nl_abs_tol = 5.e-8

  start_time = 0.0
  dt = 0.02
  dtmin = 0.02
  num_steps = 300
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/grain_growth/voronoi.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  nz = 0
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1000
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 4
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 105
    grain_num = 4
    coloring_algorithm = bt
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Postprocessors]
  active = ''
  [./ngrains]
    type = FeatureFloodCount
    variable = bnds
    threshold = 0.7
  [../]
[]

[Preconditioning]
  active = ''
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 2
  dt = 80.0
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/glued_penalty_dirac_sm.i

# This is a dirac (contact formulation) version of glued_penalty.i
[Mesh]
  file = blocks_2d_nogap.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.01
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e7
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = glued
    formulation = penalty
    penalty = 1e+7
    system = dirackernel
  [../]
[]

modules/phase_field/test/tests/rigidbodymotion/grain_appliedforcedensity.i

# test file for showing grain motion due to applied force density on grains
[GlobalParams]
  var_name_base = eta
  op_num = 2
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 10
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SpecifiedSmoothCircleIC
      invalue = 1.0
      outvalue = 0.1
      int_width = 6.0
      x_positions = '20.0 30.0 '
      z_positions = '0.0 0.0 '
      y_positions = '0.0 25.0 '
      radii = '14.0 14.0'
      3D_spheres = false
      variable = c
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./load]
    type = ConstantFunction
    value = 0.01
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = 'eta0 eta1'
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '5.0  2.0      0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = c
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
    derivative_order = 2
  [../]
  [./force_density_ext]
    type = ExternalForceDensityMaterial
    c = c
    etas = 'eta0 eta1'
    k = 1.0
    force_y = load
  [../]
[]

[AuxVariables]
  [./eta0]
  [../]
  [./eta1]
  [../]
  [./bnds]
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    var_name_base = eta
    op_num = 2
    v = 'eta0 eta1'
  [../]
[]

[ICs]
  [./ic_eta0]
    int_width = 6.0
    x1 = 20.0
    y1 = 0.0
    radius = 14.0
    outvalue = 0.0
    variable = eta0
    invalue = 1.0
    type = SmoothCircleIC
  [../]
  [./IC_eta1]
    int_width = 6.0
    x1 = 30.0
    y1 = 25.0
    radius = 14.0
    outvalue = 0.0
    variable = eta1
    invalue = 1.0
    type = SmoothCircleIC
  [../]
[]

[VectorPostprocessors]
  [./forces]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force]
    type = ComputeExternalGrainForceAndTorque
    execute_on = 'linear nonlinear'
    grain_data = grain_center
    c = c
    etas = 'eta0 eta1'
    force_density = force_density_ext
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/porous_flow/test/tests/sinks/s09.i

# Apply a piecewise-linear sink flux to the right-hand side and watch fluid flow to it
#
# This test has a single phase with two components.  The test initialises with
# the porous material fully filled with component=1.  The left-hand side is fixed
# at porepressure=1 and mass-fraction of the zeroth component being unity.
# The right-hand side has a very strong piecewise-linear flux that keeps the
# porepressure~0 at that side.  Fluid mass is extracted by this flux in proportion
# to the fluid component mass fraction.
#
# Therefore, the zeroth fluid component will flow from left to right (down the
# pressure gradient).
#
# The important DE is
# porosity * dc/dt = (perm / visc) * grad(P) * grad(c)
# which is true for c = mass-fraction, and very large bulk modulus of the fluid.
# For grad(P) constant in time and space (as in this example) this is just the
# advection equation for c, with velocity = perm / visc / porosity.  The parameters
# are chosen to velocity = 1 m/s.
# In the numerical world, and especially with full upwinding, the advection equation
# suffers from diffusion.  In this example, the diffusion is obvious when plotting
# the mass-fraction along the line, but the average velocity of the front is still
# correct at 1 m/s.
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp frac'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Variables]
  [./pp]
  [../]
  [./frac]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = 1-x
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = frac
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = pp
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    gravity = '0 0 0'
    variable = frac
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    gravity = '0 0 0'
    variable = pp
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1e10 # need large in order for constant-velocity advection
      density0 = 1 # almost irrelevant, except that the ability of the right BC to keep P fixed at zero is related to density_P0
      thermal_expansion = 0
      viscosity = 11
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = frac
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.1 0 0 0 1.1 0 0 0 1.1'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2 # irrelevant in this fully-saturated situation
    phase = 0
  [../]
[]


[BCs]
  [./lhs_fixed_a]
    type = DirichletBC
    boundary = 'left'
    variable = frac
    value = 1
  [../]
  [./lhs_fixed_b]
    type = DirichletBC
    boundary = 'left'
    variable = pp
    value = 1
  [../]
  [./flux0]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'right'
    pt_vals = '-100 100'
    multipliers = '-1 1'
    variable = frac # the zeroth comonent
    mass_fraction_component = 0
    use_mobility = false
    use_relperm = false
    fluid_phase = 0
    flux_function = 1E4
  [../]
  [./flux1]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'right'
    pt_vals = '-100 100'
    multipliers = '-1 1'
    variable = pp # comonent 1
    mass_fraction_component = 1
    use_mobility = false
    use_relperm = false
    fluid_phase = 0
    flux_function = 1E4
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_max_it -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu 10000 NONZERO 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-2
  end_time = 1
  nl_rel_tol = 1E-12
  nl_abs_tol = 1E-12
[]

[VectorPostprocessors]
  [./mf]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 100
    sort_by = x
    variable = frac
  [../]
[]

[Outputs]
  file_base = s09
  [./console]
    type = Console
    execute_on = 'nonlinear linear'
  [../]
  [./csv]
    type = CSV
    sync_times = '0.1 0.5 1'
    sync_only = true
  [../]
  interval = 10
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform1.i

# Elastic deformation.
# With Lame lambda=0 and Lame mu=1, applying the following
# deformation to the zmax surface of a unit cube:
# disp_x = 8*t
# disp_y = 6*t
# disp_z = t
# should yield stress:
# stress_xz = 8*t
# stress_xy = 6*t
# stress_zz = 2*t
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 8*t
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 6*t
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = t
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = combined_inelastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = combined_inelastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = combined_inelastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = combined_inelastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = combined_inelastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = combined_inelastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zz
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = ''
    perform_finite_strain_rotations = false
  [../]
[]

[Executioner]
  end_time = 2
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform1
  csv = true
[]

test/tests/kernels/ad_vector_couple/ad_vector_couple_default.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [u]
    family = LAGRANGE
    order = FIRST
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = ADDiffusion
    variable = u
  []
  [convection]
    type = ADCoupledVectorConvection
    variable = u
    velocity_vector = '0 1'
  []
[]

[BCs]
  [left]
    type = ADFunctionDirichletBC
    variable = u
    function = 1
    boundary = 'left'
  []
  [right]
    type = ADFunctionDirichletBC
    variable = u
    function = 2
    boundary = 'bottom'
  []
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 10
  dt = 0.1
[]

[Outputs]
  execute_on = TIMESTEP_END
  exodus = true
[]

modules/combined/test/tests/ad_cavity_pressure/multiple_postprocessors.i

#
# Cavity Pressure Test (Volume input as a vector of postprocessors)
#
# This test is designed to compute an internal pressure based on
#   p = n * R * T / V
# where
#   p is the pressure
#   n is the amount of material in the volume (moles)
#   R is the universal gas constant
#   T is the temperature
#   V is the volume
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total
#   initial volume is 7.
# The test adjusts n, T, and V in the following way:
#   n => n0 + alpha * t
#   T => T0 + beta * t
#   V => V0 + gamma * t
# with
#   alpha = n0
#   beta = T0 / 2
#   gamma = - (0.003322259...) * V0
#   T0 = 240.54443866068704
#   V0 = 7
#   n0 = f(p0)
#   p0 = 100
#   R = 8.314472 J * K^(-1) * mol^(-1)
#
# So, n0 = p0 * V0 / R / T0 = 100 * 7 / 8.314472 / 240.544439
#        = 0.35
#
# In this test the internal volume is calculated as the sum of two Postprocessors
# internalVolumeInterior and internalVolumeExterior.  This sum equals the value
# reported by the internalVolume postprocessor.
#
# The parameters combined at t = 1 gives p = 301.
#

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = 3d.e
[]

[Functions]
  [./displ_positive]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.0029069767441859684'
  [../]
  [./displ_negative]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 -0.0029069767441859684'
  [../]
  [./temp1]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1.5'
    scale_factor = 240.54443866068704
  [../]
  [./material_input_function]
    type = PiecewiseLinear
    x = '0    1'
    y = '0 0.35'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 240.54443866068704
  [../]
  [./material_input]
  [../]
[]

[AuxVariables]
  [./pressure_residual_x]
  [../]
  [./pressure_residual_y]
  [../]
  [./pressure_residual_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    use_automatic_differentiation = true
  [../]
  [./heat]
    type = ADDiffusion
    variable = temp
    use_displaced_mesh = true
  [../]
  [./material_input_dummy]
    type = ADDiffusion
    variable = material_input
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_xx
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_yy
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_zz
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
    variable = stress_xy
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 2
    variable = stress_yz
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 0
    variable = stress_zx
  [../]
[]

[BCs]
  [./no_x_exterior]
    type = DirichletBC
    variable = disp_x
    boundary = '7 8'
    value = 0.0
  [../]
  [./no_y_exterior]
    type = DirichletBC
    variable = disp_y
    boundary = '9 10'
    value = 0.0
  [../]
  [./no_z_exterior]
    type = DirichletBC
    variable = disp_z
    boundary = '11 12'
    value = 0.0
  [../]
  [./prescribed_left]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 13
    function = displ_positive
  [../]
  [./prescribed_right]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 14
    function = displ_negative
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '15 16'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '17 18'
    value = 0.0
  [../]
  [./no_x_interior]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]
  [./no_y_interior]
    type = DirichletBC
    variable = disp_y
    boundary = '3 4'
    value = 0.0
  [../]
  [./no_z_interior]
    type = DirichletBC
    variable = disp_z
    boundary = '5 6'
    value = 0.0
  [../]
  [./temperatureInterior]
    type = ADFunctionDirichletBC
    boundary = 100
    function = temp1
    variable = temp
  [../]
  [./MaterialInput]
    type = ADFunctionDirichletBC
    boundary = '100 13 14 15 16'
    function = material_input_function
    variable = material_input
  [../]
  [./CavityPressure]
    [./1]
      boundary = 100
      initial_pressure = 100
      material_input = materialInput
      R = 8.314472
      temperature = aveTempInterior
      volume = 'internalVolumeInterior internalVolumeExterior'
      startup_time = 0.5
      output = ppress
      save_in = 'pressure_residual_x pressure_residual_y pressure_residual_z'
      use_automatic_differentiation = true
    [../]
  [../]
[]

[Materials]
  [./elast_tensor1]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e1
    poissons_ratio = 0
    block = 1
  [../]
  [./strain1]
    type = ADComputeFiniteStrain
    block = 1
  [../]
  [./stress1]
    type = ADComputeFiniteStrainElasticStress
    block = 1
  [../]
  [./elast_tensor2]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0
    block = 2
  [../]
  [./strain2]
    type = ADComputeFiniteStrain
    block = 2
  [../]
  [./stress2]
    type = ADComputeFiniteStrainElasticStress
    block = 2
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  nl_rel_tol = 1e-12
  l_tol = 1e-12

  l_max_its = 20

  dt = 0.5
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 100
    execute_on = 'initial linear'
  [../]
  [./aveTempInterior]
    type = SideAverageValue
    boundary = 100
    variable = temp
    execute_on = 'initial linear'
  [../]
  [./internalVolumeInterior]
    type = InternalVolume
    boundary = '1 2 3 4 5 6'
    execute_on = 'initial linear'
  [../]
  [./internalVolumeExterior]
    type = InternalVolume
    boundary = '13 14 15 16 17 18'
    execute_on = 'initial linear'
  [../]
  [./materialInput]
    type = SideAverageValue
    boundary = '7 8 9 10 11 12'
    variable = material_input
    execute_on = linear
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_drucker_prager/small_deform2_outer_tip.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1.5E-6*x+2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    mc_interpolation_scheme = outer_tip
    internal_constraint_tolerance = 1 # irrelevant here
    yield_function_tolerance = 1      # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = cdp
    perform_finite_strain_rotations = false
  [../]
  [./cdp]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-8
    tip_smoother = 4
    smoothing_tol = 1E-5
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_outer_tip
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/restart/start_time_override/start_time_override.i

[Mesh]
  type = GeneratedMesh
  nx = 5
  ny = 5
  dim = 2
[]

[Problem]
  restart_file_base = transient_out_cp/LATEST
  skip_additional_restart_data = true
[]

[Variables]
  [u]
    order = FIRST
    family = LAGRANGE
  []
[]

[Kernels]
  [bodyforce]
    type = BodyForce
    variable = u
    value = 10.0
  []

  [ie]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  []

  [right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 10
  []
[]

[Postprocessors]
  [u_norm]
    type = ElementL2Norm
    variable = u
  []
[]

[Executioner]
  type = Transient

  # Start time can be set explicitly here or be picked up from the restart file
  num_steps = 5
  dt = 0.1
[]

[Outputs]
  csv = true
[]

test/tests/time_integrators/tvdrk2/2d-quadratic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 20
  ny = 20
  elem_type = QUAD9
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*((x*x)+(y*y))-(4*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*((x*x)+(y*y))
  [../]
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
    implicit = true
  [../]

  [./diff]
    type = Diffusion
    variable = u
    implicit = false
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
    implicit = false
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    variable = u
    function = ic
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  [./TimeIntegrator]
    type = ExplicitTVDRK2
  [../]
  solve_type = 'LINEAR'

  start_time = 0.0
  num_steps = 10
  dt = 0.0001
  l_tol = 1e-8
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/richards/test/tests/uo_egs/seff2.i

# Outputs a 2phase effective saturation relationship into an exodus file
# and into a CSV file.
# In the exodus file, the Seff will be a function of "x", and
# this "x" is actually the difference in porepressures,
# say P_gas - P_water (so "x" should be positive).
# In the CSV file you will find the Seff at the "x" point
# specified by you below.
#
# You may specify:
#  - the "type" of Seff in the UserObjects block
#  - the parameters of this Seff function in the UserObjects block
#  - the "x" point (which is del_porepressure) that you want to extract
#       the Seff at, if you want a value at a particular point
#  - the range of "x" values (which is porepressure values) may be
#       changed in the Mesh block, below


[UserObjects]
  [./seff]
    type = RichardsSeff2waterVG
    al = 1E-6
    m = 0.8
  [../]
[]

[Postprocessors]
  [./point_val]
    type = PointValue
    execute_on = timestep_begin
    # note this point must lie inside the mesh below
    point = '1 0 0'
    variable = seff
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  # the following specify the range of porepressure
  xmin = 0
  xmax = 3E6
[]

############################
# You should not need to change any of the stuff below
############################


[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = x
  [../]
  [./v_init]
    type = ConstantIC
    variable = v
    value = 0
  [../]
[]

[AuxVariables]
  [./seff]
  [../]
[]

[AuxKernels]
  [./seff_AuxK]
    type = RichardsSeffAux
    variable = seff
    seff_UO = seff
    execute_on = timestep_begin
    pressure_vars = 'v u'
  [../]
[]

[Kernels]
  [./dummy_u]
    type = Diffusion
    variable = u
  [../]
  [./dummy_v]
    type = Diffusion
    variable = v
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 0
[]

[Outputs]
  file_base = seff2
  [./csv]
    type = CSV
  [../]
  [./exodus]
    type = Exodus
    hide = 'u v'
  [../]
[]

test/tests/markers/oriented_box_marker/obm.i

# checks that OrientedBoxMarker behaves as desired

[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = -6
  xmax = 4
  nx = 10
  ymin = -2
  ymax = 10
  ny = 12
  zmin = -5
  zmax = 7
  nz = 12
[]

[Variables]
  [./u]
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
  kernel_coverage_check = false
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  end_time = 1
[]

[Adaptivity]
  marker = obm
  [./Markers]
    [./obm]
      type = OrientedBoxMarker
      center = '-1 4 1'
      width = 5
      length = 10
      height = 4
      width_direction = '2 1 0'
      length_direction = '-1 2 2'
      inside = refine
      outside = do_nothing
    [../]
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_fully_saturated_2.i

# Pressure pulse in 1D with 1 phase - transient
# using the PorousFlowFullySaturatedDarcyBase Kernel
# and the PorousFlowFullySaturatedMassTimeDerivative Kernel
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 2E6
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowFullySaturatedMassTimeDerivative
    variable = pp
  [../]
  [./flux]
    type = PorousFlowFullySaturatedDarcyBase
    variable = pp
    gravity = '0 0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
  [../]
  [./ppss_qp]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    fluid_bulk_modulus = 2E9
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pp
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-20 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[Postprocessors]
  [./p005]
    type = PointValue
    variable = pp
    point = '5 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p015]
    type = PointValue
    variable = pp
    point = '15 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p025]
    type = PointValue
    variable = pp
    point = '25 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p035]
    type = PointValue
    variable = pp
    point = '35 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p045]
    type = PointValue
    variable = pp
    point = '45 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p055]
    type = PointValue
    variable = pp
    point = '55 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p065]
    type = PointValue
    variable = pp
    point = '65 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p075]
    type = PointValue
    variable = pp
    point = '75 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p085]
    type = PointValue
    variable = pp
    point = '85 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p095]
    type = PointValue
    variable = pp
    point = '95 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  file_base = pressure_pulse_1d_fully_saturated_2
  print_linear_residuals = false
  csv = true
[]

test/tests/geomsearch/patch_update_strategy/auto.i

[Mesh]
  type = FileMesh
  file = long_range.e
  dim = 2
  patch_update_strategy = auto
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./u]
    block = right
  [../]
[]

[AuxVariables]
  [./linear_field]
  [../]
  [./receiver]
    # The field to transfer into
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./elemental_reciever]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./linear_in_y]
    # This just gives us something to transfer that varies in y so we can ensure the transfer is working properly...
    type = FunctionAux
    variable = linear_field
    function = y
    execute_on = initial
  [../]
  [./right_to_left]
    type = GapValueAux
    variable = receiver
    paired_variable = linear_field
    paired_boundary = rightleft
    execute_on = timestep_end
    boundary = leftright
  [../]
  [./y_displacement]
    type = FunctionAux
    variable = disp_y
    function = t
    execute_on = 'linear timestep_begin'
    block = left
  [../]
  [./elemental_right_to_left]
    type = GapValueAux
    variable = elemental_reciever
    paired_variable = linear_field
    paired_boundary = rightleft
    boundary = leftright
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = righttop
    value = 1
  [../]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = rightbottom
    value = 0
  [../]
[]

[Problem]
  type = FEProblem
  kernel_coverage_check = false
[]

[Executioner]
  type = Transient
  num_steps = 30
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/materials/stateful_prop/spatial_adaptivity_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  uniform_refine = 3
  # This option is necessary if you have uniform refinement + stateful material properties + adaptivity
  skip_partitioning = true
  # stateful material properties + adaptivity are not yet compatible
  # with distributed meshes
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ssm]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./conv]
    type = Convection
    variable = u
    velocity = '1 0 0'
  [../]
[]

[AuxKernels]
  [./ssm]
    type = MaterialRealAux
    variable = ssm
    property = diffusivity
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./ssm]
    type = SpatialStatefulMaterial
    block = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  num_steps = 4
  dt = 1
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  marker = box
  [./Markers]
    [./box]
      type = BoxMarker
      bottom_left = '0.2 0.2 0'
      top_right = '0.4 0.4 0'
      inside = refine
      outside = coarsen
    [../]
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/richards/test/tests/dirac/bh10.i

# fully-saturated
# production
# with anisotropic and nonsymmetric (!) permeability
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = 1
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E7
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '2E-12 0 0  1E-12 3E-12 0  0 0 1E-12'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON

[]

[Outputs]
  file_base = bh10
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform_hard2.i

# apply uniform stretches in x, y and z directions.
# let friction_angle = 60deg, friction_angle_residual=10deg, friction_angle_rate = 0.5E4
# With cohesion = C, friction_angle = phi, tip_smoother = T, the
# algorithm should return to
# sigma_m = (C*Cos(phi) - T)/Sin(phi)
# Or, when T=C,
# phi = 2*pi*n - 2*arctan(sigma_m/C)
# This allows checking of the relationship for phi

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.04719755 # 60deg
    value_residual = 0.17453293 # 10deg
    rate = 0.5E4
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 10
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '10 1 2 1 10 3 2 3 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1E-3
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard2
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/misc/test/tests/dynamic_loading/dynamic_load_multiapp/phase_field_slave.i

# This input file contains objects only available in phase_field
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 2
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 2
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 15.0
      x2 = 35.0
      y1 = 0.0
      y2 = 25.0
      inside = 1.0
      outside = -0.8
      variable = c
    [../]
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
    block = 0
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 101'
  l_max_its = 15
  nl_max_its = 10
  start_time = 0.0
  num_steps = 2
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

test/tests/problems/no_solve/no_solve.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./t]
  [../]
[]

[AuxKernels]
  [./t]
    type = FunctionAux
    variable = t
    function = t
    execute_on = timestep_end
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 5

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_3/cyl3_mu_0_2_pen_sm.i

[Mesh]
  file = cyl3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = cyl3_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = cyl3_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/sm/frictionless_kinematic_sm.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the kinematic method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2. The gold file is run
#  on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm     lu    20    101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+6
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/porous_flow/test/tests/mass_conservation/mass01.i

# checking that the mass postprocessor correctly calculates the mass
# 1phase, 1component, constant porosity
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 3
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pinit]
    type = FunctionIC
    function = x
    variable = pp
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Postprocessors]
  [./total_mass]
    type = PorousFlowFluidMass
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1 1 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mass01
  csv = true
[]

modules/richards/test/tests/jacobian_2/jn_fu_02.i

# two phase
# unsaturated = true

# gravity = true
# supg = false
# transient = false

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardsfgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn02
  exodus = false
[]

test/tests/nodalkernels/jac_test/bc_jacobian_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
[]

[Variables]
  [./u_x]
  [../]
  [./u_y]
  [../]
[]

[Kernels]
  [./diff_x]
    type = CoefDiffusion
    variable = u_x
    coef = 0.1
  [../]
  [./diff_y]
    type = CoefDiffusion
    variable = u_y
    coef = 0.1
  [../]
[]

[NodalKernels]
  [./test_y]
    type = JacobianCheck
    variable = u_y
    boundary = top
  [../]
  [./test_x]
    type = JacobianCheck
    variable = u_x
    boundary = top
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = u_x
    preset = false
    boundary = left
    value = 0
  [../]
  [./right_x]
    type = DirichletBC
    variable = u_x
    preset = false
    boundary = right
    value = 1
  [../]
  [./left_y]
    type = DirichletBC
    variable = u_y
    preset = false
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
  solve_type = NEWTON
# petsc_options = '-snes_check_jacobian -snes_check_jacobian_view'
  nl_max_its = 1
  nl_abs_tol = 1e0
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/heat_conduction/two_phase.i

# 2phase heat conduction, with saturation fixed at 0.5
# apply a boundary condition of T=300 to a bar that
# is initially at T=200, and observe the expected
# error-function response
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./phase0_porepressure]
    initial_condition = 0
  [../]
  [./phase1_saturation]
    initial_condition = 0.5
  [../]
  [./temp]
    initial_condition = 200
  [../]
[]

[Kernels]
  [./dummy_p0]
    type = TimeDerivative
    variable = phase0_porepressure
  [../]
  [./dummy_s1]
    type = TimeDerivative
    variable = phase1_saturation
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
  [./heat_conduction]
    type = PorousFlowHeatConduction
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp phase0_porepressure phase1_saturation'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 0.4
      thermal_expansion = 0
      cv = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.3
      thermal_expansion = 0
      cv = 2
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '0.3 0 0  0 0 0  0 0 0'
    wet_thermal_conductivity = '1.7 0 0  0 0 0  0 0 0'
    exponent = 1.0
    aqueous_phase_number = 1
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = phase0_porepressure
    phase1_saturation = phase1_saturation
    capillary_pressure = pc
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.8
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.0
    density = 0.25
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 300
    variable = temp
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E1
  end_time = 1E2
[]

[Postprocessors]
  [./t000]
    type = PointValue
    variable = temp
    point = '0 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t010]
    type = PointValue
    variable = temp
    point = '10 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t020]
    type = PointValue
    variable = temp
    point = '20 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t030]
    type = PointValue
    variable = temp
    point = '30 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t040]
    type = PointValue
    variable = temp
    point = '40 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t050]
    type = PointValue
    variable = temp
    point = '50 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t060]
    type = PointValue
    variable = temp
    point = '60 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t070]
    type = PointValue
    variable = temp
    point = '70 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t080]
    type = PointValue
    variable = temp
    point = '80 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t090]
    type = PointValue
    variable = temp
    point = '90 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t100]
    type = PointValue
    variable = temp
    point = '100 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  file_base = two_phase
  [./csv]
    type = CSV
  [../]
  exodus = false
[]

tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7c_adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 3
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
  uniform_refine = 3
[]

[Variables]
  [pressure]
  []
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[AuxVariables]
  [velocity]
    order = CONSTANT
    family = MONOMIAL_VEC
  []
[]

[Kernels]
  [darcy_pressure]
    type = DarcyPressure
    variable = pressure
  []
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
  [heat_convection]
    type = DarcyAdvection
    variable = temperature
    pressure = pressure
  []
[]

[AuxKernels]
  [velocity]
    type = DarcyVelocity
    variable = velocity
    execute_on = timestep_end
    pressure = pressure
  []
[]

[BCs]
  [inlet]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 4000 # (Pa) From Figure 2 from paper.  First data point for 1mm spheres.
  []
  [outlet]
    type = DirichletBC
    variable = pressure
    boundary = right
    value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
  []
  [inlet_temperature]
    type = FunctionDirichletBC
    variable = temperature
    boundary = left
    function = 'if(t<0,350+50*t,350)'
  []

  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = right
  []
[]

[Materials]
  [column]
    type = PackedColumn
    radius = 1
    temperature = temperature
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  automatic_scaling = true

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  end_time = 100
  dt = 0.25
  start_time = -1

  steady_state_tolerance = 1e-5
  steady_state_detection = true

  [TimeStepper]
    type = FunctionDT
    function = 'if(t<0,0.1,0.25)'
  []
[]

[Outputs]
  exodus = true
[]

[Adaptivity]
  marker = error_frac
  max_h_level = 3
  [Indicators]
    [temperature_jump]
      type = GradientJumpIndicator
      variable = temperature
      scale_by_flux_faces = true
    []
  []
  [Markers]
    [error_frac]
      type = ErrorFractionMarker
      coarsen = 0.15
      indicator = temperature_jump
      refine = 0.7
    []
  []
[]

modules/tensor_mechanics/test/tests/plane_stress/3D_finite_tension_pull.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  extra_tag_vectors = 'ref'
[]

[Mesh]
  [gmg]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 1
    ny = 1
    nz = 1
  []
[]

[AuxVariables]
  [react_x]
  []
[]

[Postprocessors]
  [react_x]
    type = NodalSum
    variable = 'react_x'
    boundary = 'right'
  []
  [stress_xx]
    type = ElementalVariableValue
    variable = 'stress_xx'
    elementid = 0
  []
  [strain_zz]
    type = ElementalVariableValue
    variable = 'strain_zz'
    elementid = 0
  []
[]

[Modules/TensorMechanics/Master]
  [plane_stress]
    strain = FINITE
    extra_vector_tags = 'ref'
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy strain_zz'
    add_variables = true
  []
[]

[AuxKernels]
  [react_x]
    type = TagVectorAux
    vector_tag = 'ref'
    v = 'disp_x'
    variable = 'react_x'
  []
[]

[BCs]
  [leftx]
    type = DirichletBC
    boundary = left
    variable = disp_x
    value = 0.0
  []
  [bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  []
  [backz]
    type = DirichletBC
    boundary = back
    variable = disp_z
    value = 0.0
  []
  [rightx]
    type = FunctionDirichletBC
    boundary = right
    variable = disp_x
    function = 't'
  []
[]

[Materials]
  [elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  []
  [stress]
    type = ComputeFiniteStrainElasticStress
  []
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

  # time control
  start_time = 0.0
  dt = 0.01
  dtmin = 0.01
  end_time = 0.2
[]

[Outputs]
  csv = true
[]

test/tests/transfers/multiapp_userobject_transfer/3d_1d_master.i

# This does a dummy diffusion solve in 3D space, then computes a layered average
# in the z direction. Those values are transferred into a sub-app that has 1D mesh
# in the z-direction (the mesh was displaced so that it is aligned in such a way).
# The sub-app also does a dummy diffusion solve and then computes layered average
# in the z-direction. Those value are transferred back to the master app.
#
# Physically the 1D sub-app is placed in the center of the 3D mesh and is oriented
# in the z-direction.  The bounding box of the sub-app is expanded such that it
# contains the 4 central elements of the 3D mesh (i.e. the values are transferred
# only into a part of master mesh)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 10
  # The MultiAppUserObjectTransfer object only works with ReplicatedMesh
  parallel_type = replicated
[]

[AuxVariables]
  [./from_sub_app_var]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[UserObjects]
  [master_uo]
    type = LayeredAverage
    direction = z
    num_layers = 10
    variable = u
  []
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [td]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = front
    value = -1
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = back
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 5

  solve_type = 'NEWTON'
  l_tol = 1e-8
  nl_rel_tol = 1e-10
[]

[Outputs]
  exodus = true
  execute_on = final
[]

[MultiApps]
  [sub_app]
    positions = '0.5 0.5 0.0'
    type = TransientMultiApp
    input_files = 3d_1d_sub.i
    app_type = MooseTestApp
    bounding_box_padding = '0.25 0.25 0'
    bounding_box_inflation = 0
    use_displaced_mesh = true
    execute_on = TIMESTEP_END
  []
[]

[Transfers]
  [layered_transfer_to_sub_app]
    type = MultiAppUserObjectTransfer
    direction = to_multiapp
    user_object = master_uo
    variable = sub_app_var
    multi_app = sub_app
    displaced_target_mesh = true
  []
  [layered_transfer_from_sub_app]
    type = MultiAppUserObjectTransfer
    direction = from_multiapp
    user_object = sub_app_uo
    variable = from_sub_app_var
    multi_app = sub_app
    displaced_source_mesh = true
  []
[]

modules/tensor_mechanics/test/tests/weak_plane_tensile/large_deform1.i

# rotate the mesh by 90degrees
# then pull in the z direction - should be no plasticity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  # rotate:
  # ynew = c*y + s*z.  znew = -s*y + c*z
  [./bottomx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = back
    function = '0'
  [../]
  [./bottomy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = back
    function = '0*y+1*z-y'
  [../]
  [./bottomz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = back
    function = '-1*y+0*z-z+if(t>0,0.5-y,0)' # note that this uses original nodal values of (x,y,z)
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = '0'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = '0*y+1*z-y'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '-1*y+0*z-z+if(t>0,0.5-y,0)' # note that this uses original nodal values of (x,y,z)
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wpt
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-5
  [../]
[]


[Executioner]
  start_time = -1
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = large_deform1
  [./csv]
    type = CSV
    [../]
  [./exodus]
    type = Exodus
    [../]
[]

modules/combined/test/tests/solid_mechanics/hoop_stress/hoop_stress_default_yaxis.i

#
# Hoop stress
#
# This test checks that hoop stress is calculated correctly for the default orientation.
# It calculates the hoop stress for a hoop cenetered at (-25,0,0) with the default vector (0,1,0).
# The hoop has a radius = 20, t = 1.
#
# Hoop stress should be P*r/t -> 1e3*20/1 = 20e3
#
# The output hoop stress is close to this value (nonlinear geometry is on) for all
# elements.
#

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = hoop_default_yaxis.e
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e3
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hoop2]
    order = CONSTANT
    family = MONOMIAL
    block = 2
  [../]
  [./radial2]
    order = CONSTANT
    family = MONOMIAL
    block = 2
  [../]
  [./axial2]
    order = CONSTANT
    family = MONOMIAL
    block = 2
  [../]

[] # AuxVariables

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
    execute_on = timestep_end
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
    execute_on = timestep_end
  [../]
  [./hoop2]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = HoopStress
    variable = hoop2
    block = 2
    execute_on = timestep_end
  [../]
  [./radial2]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = RadialStress
    variable = radial2
    block = 2
    execute_on = timestep_end
  [../]
  [./axial2]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = AxialStress
    variable = axial2
    block = 2
    execute_on = timestep_end
  [../]

[] # AuxKernels

[BCs]

  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = '11'
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = '200'
    value = 0
  [../]
  [./fix_z]
    type = DirichletBC
    variable = disp_z
    boundary = '13'
    value = 0
  [../]

  [./Pressure]
    [./internal_pressure]
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
      boundary = 1
      function = pressure
    [../]
  [../]

[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 2
    youngs_modulus = 1e6
    poissons_ratio = 0.35
  [../]
  [./small_strain]
    type = ComputeIncrementalSmallStrain
    block = 2
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
    block = 2
  [../]
[]

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-ksp_gmres_modifiedgramschmidt'
  petsc_options_iname = '-ksp_gmres_restart -pc_type  -pc_hypre_type'
  petsc_options_value = '201                 hypre     boomeramg     '


  line_search = 'none'

  l_tol = 1e-8
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-14

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[] # Executioner

[Outputs]
  exodus = true
  file_base = hoop_stress_default_yaxis_out
[] # Outputs

python/peacock/tests/common/transient_big.i

###########################################################
# This is a simple test with a time-dependent problem
# demonstrating the use of a "Transient" Executioner.
#
# @Requirement F1.10
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
  uniform_refine = 2
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./dt]
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'

  # Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.1
[]

[Outputs]
  file_base = out_transient
  exodus = true
[]

modules/tensor_mechanics/test/tests/beam/action/beam_action_chk.i

# Test for checking syntax for line element action input.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = 0.0
  xmax = 1.0
  displacements = 'disp_x disp_y disp_z'
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_1]
    type = ConstantRate
    variable = disp_y
    boundary = 2
    rate = 1e-2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Modules/TensorMechanics/LineElementMaster]
  [./block_1]
    add_variables = true

    # Geometry parameters
    Iy = 0.0141889
    Iz = 0.0141889
    y_orientation = '0.0 1.0 0.0'

    block = 1

    # dynamic simulation using consistent mass/inertia matrix
    dynamic_consistent_inertia=true

    #dynamic simulation using nodal mass/inertia matrix
    dynamic_nodal_translational_inertia = true

    dynamic_nodal_rotational_inertia = true
    nodal_Iyy = 1e-1
    nodal_Izz = 1e-1

    velocities = 'vel_x'
    accelerations = 'accel_x'
    rotational_accelerations = 'rot_accel_x'

    gamma = 0.5 # Newmark time integration parameter

    boundary = right # Node set where nodal mass and nodal inertia are applied

    # optional parameters for Rayleigh damping
    eta = 0.1 # Mass proportional Rayleigh damping
  [../]
  [./block_all]
    add_variables = true
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'

    # Geometry parameters
    area = 0.554256
    Iy = 0.0141889
    Iz = 0.0141889
    y_orientation = '0.0 1.0 0.0'
  [../]
[]

[Materials]
  [./stress]
    type = ComputeBeamResultants
    block = '1 2'
  [../]
  [./elasticity_1]
    type = ComputeElasticityBeam
    youngs_modulus = 2.0
    poissons_ratio = 0.3
    shear_coefficient = 1.0
    block = '1 2'
  [../]
[]

[Postprocessors]
  [./disp_y_1]
    type = PointValue
    point = '1.0 0.0 0.0'
    variable = disp_y
  [../]
  [./disp_y_2]
    type = PointValue
    point = '1.0 1.0 0.0'
    variable = disp_y
  [../]
[]

[Outputs]
  exodus = false
[]

modules/peridynamics/test/tests/simple_tests/2D_small_strain_NOSPD.i


[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 8
    ny = 8
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1003
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1001
    function = '0.001*t'
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e8
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeSmallStrainNOSPD
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  end_time = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

[Outputs]
  file_base = 2D_small_strain_NOSPD
  exodus = true
[]

test/tests/test_harness/bad_kernel.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = BogusKernel
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4 # Gold file only has 4 steps
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
  perf_graph = true
[]

modules/porous_flow/test/tests/jacobian/disp04.i

# Test the Jacobian of the PorousFlowDisperiveFlux kernel

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
[]

[ICs]
  [./pp]
    type = RandomIC
    variable = pp
    max = 2e1
    min = 1e1
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = pp
    gravity = '1 0 0'
    disp_long = 0.2
    disp_trans = 0.1
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    gravity = '1 0 0'
    disp_long = 0.2
    disp_trans = 0.1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1e7
      density0 = 10
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temp]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1e-2 1e-1'
    tortuosity = '0.1'
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
[]

[Preconditioning]
  active = smp
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/materials/material/exception_material.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./mat]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./time_derivative]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = MatDiffusionTest
    variable = u
    prop_name = matp
  [../]
  [./f]
    type = BodyForce
    variable = u
    function = '20'
  [../]
[]

[AuxKernels]
  [./mat]
    # Sequence of events:
    # 1.) MaterialRealAux is re-evaluated every linear iteration
    # 2.) MaterialRealAux calls ExceptionMaterial::computeQpProperties()
    # 3.) ExceptionMaterial throws a MooseException.
    # 4.) The MooseException is caught and handled by MOOSE.
    # 5.) The next solve is automatically failed.
    # 6.) Time timestep is cut and we try again.
    #
    # The idea is to test that MOOSE can recover when exceptions are
    # thrown during AuxKernel evaluation, and not just nonlinear
    # residual/jacobian evaluation.
    type = MaterialRealAux
    variable = mat
    property = matp
  [../]
[]

[BCs]
  [./all]
    type = DirichletBC
    variable = u
    boundary = 'left top bottom right'
    value = 0
  [../]
[]

[Materials]
  [./mat]
    type = ExceptionMaterial
    block = 0
    rank = 0
    coupled_var = u
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  end_time = .5
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/dirac/bh_fu_02.i

# fully-saturated
# production
# fullyupwind
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  sat_UO = Saturation
  seff_UO = Seff1VG
  SUPG_UO = SUPGstandard
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = 1
    fully_upwind = true
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E7
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-12 0 0  0 1E-12 0  0 0 1E-12'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON

[]

[Outputs]
  file_base = bh_fu_02
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/richards/test/tests/gravity_head_2/gh06.i

# unsaturated = true
# gravity = true
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-13 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh06
  csv = true
[]

modules/porous_flow/test/tests/actions/fullsat_brine_except2.i

# Check error when using PorousFlowFullySaturated action,
# attempting to set nacl_index to value greater than or
# equal to number of components.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[GlobalParams]
  block = '0'
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[PorousFlowFullySaturated]
  coupling_type = ThermoHydro
  porepressure = pp
  temperature = temp
  mass_fraction_vars = "nacl"
  use_brine = true
  nacl_index = 1
  dictator_name = dictator
[]

[Variables]
  [./pp]
    initial_condition = 20E6
  [../]
  [./temp]
    initial_condition = 323.15
  [../]
  [./nacl]
    initial_condition = 0.1047
  [../]
[]

[Kernels]
  # All provided by PorousFlowFullySaturated action
[]

[BCs]
  [./t_bdy]
    type = DirichletBC
    variable = temp
    boundary = 'left right'
    value = 323.15
  [../]
  [./p_bdy]
    type = DirichletBC
    variable = pp
    boundary = 'left right'
    value = 20E6
  [../]
  [./nacl_bdy]
    type = DirichletBC
    variable = nacl
    boundary = 'left right'
    value = 0.1047
  [../]
[]

[Materials]
  # Thermal conductivity
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '3 0 0  0 3 0  0 0 3'
    wet_thermal_conductivity = '3 0 0  0 3 0  0 0 3'
  [../]

  # Specific heat capacity
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 850
    density = 2700
  [../]

  # Permeability
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-13 0 0  0 1E-13 0  0 0 1E-13'
  [../]

  # Porosity
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.3
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  file_base = fullsat_brine_except2
[]

test/tests/time_steppers/timesequence_stepper/timesequence_failed_solve.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax =  1
  ymin = -1
  ymax =  1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  # This timestepper does not use dt to set the timestep, it uses the time_sequence.
  # dt = 250
  dtmin=250
  end_time = 3000.0
  [./TimeStepper]
    type = TimeSequenceStepperFailTest
    time_sequence  = '0  1000.0 2000.0'
  [../]
  nl_rel_tol=1.e-10
[]

[Outputs]
  file_base = timesequence_failed_solve
  exodus = true
[]

modules/phase_field/test/tests/Nucleation/file.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 10
  ymax = 10
[]

[Variables]
  [./dummy]
  []
[]

[AuxVariables]
  [./c]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./c]
    type = DiscreteNucleationAux
    variable = c
    map = map
  [../]
[]

[UserObjects]
  [./inserter]
    type = DiscreteNucleationFromFile
    hold_time = 1
    file = nuclei.csv
  [../]
  [./map]
    type = DiscreteNucleationMap
    radius = 2
    int_width = 1
    inserter = inserter
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 10
  dt = 0.5
[]

[Problem]
  kernel_coverage_check = false
[]

[Outputs]
  exodus = true
  hide = dummy
[]

modules/tensor_mechanics/test/tests/eigenstrain/reducedOrderRZQuadratic.i

#
# This test checks whether the ComputeReducedOrderEigenstrain is functioning properly.
#
# If instead of 'reduced_order_eigenstrain', 'thermal_eigenstrain' is given to
# eigenstrain_names in the Modules/TensorMechanics/Master/all block, the output will be
# quite different.
#
# Open the reducedOrderRZQuadratic_out_hydro_0001.csv file and plot the hydro variables as
# a function of x.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 1
  xmax = 3
  xmin = 1
  ymax = 1
  ymin = 0
  second_order = true
[]

[Functions]
  [./tempLinear]
    type = ParsedFunction
    value = '715-5*x'
  [../]
  [./tempQuadratic]
    type = ParsedFunction
    vars = 'Tc Te'
    vals = '701 700'
    value = '(Te-Tc)/4.0*x*x+(Tc-Te)/2.0*x+Te+3.0*(Tc-Te)/4.0'
  [../]
  [./tempCubic]
    type = ParsedFunction
    value = '-1.25*x*x*x+11.25*x*x-33.75*x+733.75'
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 295.0
  [../]
[]

[AuxVariables]
  [./hydro_constant]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydro_first]
    order = FIRST
    family = MONOMIAL
  [../]
  [./hydro_second]
    order = SECOND
    family = MONOMIAL
  [../]
  [./sxx_constant]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sxx_first]
    order = FIRST
    family = MONOMIAL
  [../]
  [./sxx_second]
    order = SECOND
    family = MONOMIAL
  [../]
  [./szz_constant]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./szz_first]
    order = FIRST
    family = MONOMIAL
  [../]
  [./szz_second]
    order = SECOND
    family = MONOMIAL
  [../]
  [./thermal_constant]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./thermal_first]
    order = FIRST
    family = MONOMIAL
  [../]
  [./thermal_second]
    order = SECOND
    family = MONOMIAL
  [../]
  [./reduced_constant]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./reduced_first]
    order = FIRST
    family = MONOMIAL
  [../]
  [./reduced_second]
    order = SECOND
    family = MONOMIAL
  [../]
  [./temp2]
    order = SECOND
    family = LAGRANGE
    initial_condition = 700
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        add_variables = true
        strain = SMALL
        incremental = true
        temperature = temp2
        #eigenstrain_names = thermal_eigenstrain
        eigenstrain_names = reduced_order_eigenstrain
      [../]
    [../]
  [../]
[]

[Kernels]
  [./heat]
    type = Diffusion
    variable = temp
  [../]
[]

[AuxKernels]
  [./hydro_constant_aux]
    type = RankTwoScalarAux
    variable = hydro_constant
    rank_two_tensor = stress
    scalar_type = Hydrostatic
    execute_on = timestep_end
  [../]
  [./hydro_first_aux]
    type = RankTwoScalarAux
    variable = hydro_first
    rank_two_tensor = stress
    scalar_type = Hydrostatic
    execute_on = timestep_end
  [../]
  [./hydro_second_aux]
    type = RankTwoScalarAux
    variable = hydro_second
    rank_two_tensor = stress
    scalar_type = Hydrostatic
    execute_on = timestep_end
  [../]
  [./sxx_constant_aux]
    type = RankTwoAux
    variable = sxx_constant
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./sxx_first_aux]
    type = RankTwoAux
    variable = sxx_first
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./sxx_second_aux]
    type = RankTwoAux
    variable = sxx_second
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./szz_constant_aux]
    type = RankTwoAux
    variable = szz_constant
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./szz_first_aux]
    type = RankTwoAux
    variable = szz_first
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./szz_second_aux]
    type = RankTwoAux
    variable = szz_second
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./thermal_constant_aux]
    type = RankTwoAux
    variable = thermal_constant
    rank_two_tensor = thermal_eigenstrain
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./thermal_first_aux]
    type = RankTwoAux
    variable = thermal_first
    rank_two_tensor = thermal_eigenstrain
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./thermal_second_aux]
    type = RankTwoAux
    variable = thermal_second
    rank_two_tensor = thermal_eigenstrain
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./reduced_constant_aux]
    type = RankTwoAux
    variable = reduced_constant
    rank_two_tensor = reduced_order_eigenstrain
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./reduced_first_aux]
    type = RankTwoAux
    variable = reduced_first
    rank_two_tensor = reduced_order_eigenstrain
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./reduced_second_aux]
    type = RankTwoAux
    variable = reduced_second
    rank_two_tensor = reduced_order_eigenstrain
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./temp2]
    type = FunctionAux
    variable = temp2
    function = tempQuadratic
    execute_on = timestep_begin
  [../]
[]

[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom #'bottom top'
    value = 0.0
  [../]

  [./temp_right]
    type = DirichletBC
    variable = temp
    boundary = right
    value = 700
  [../]
  [./temp_left]
    type = DirichletBC
    variable = temp
    boundary = left
    value = 710
  [../]
[]


[Materials]
  [./fuel_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e8
    poissons_ratio = 0
  [../]
  [./fuel_thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-6
    temperature = temp2
    stress_free_temperature = 295.0
    eigenstrain_name = 'thermal_eigenstrain'
  [../]
  [./reduced_order_eigenstrain]
    type = ComputeReducedOrderEigenstrain
    input_eigenstrain_names = 'thermal_eigenstrain'
    eigenstrain_name = 'reduced_order_eigenstrain'
  [../]
[]


[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew '
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type'
  petsc_options_value = '70 hypre boomeramg'

  num_steps = 1
  nl_rel_tol = 1e-8
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
[]

[VectorPostprocessors]
  [./hydro]
    type = LineValueSampler
    num_points = 50
    start_point = '1 0.07e-3 0'
    end_point = '3 0.07e-3 0'
    sort_by = x
    variable = 'temp2 disp_x disp_y hydro_constant hydro_first hydro_second sxx_constant sxx_first sxx_second szz_constant szz_first szz_second thermal_constant thermal_first thermal_second reduced_constant reduced_first reduced_second'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto10.i

# checking jacobian for 3-plane linear plasticity using SimpleTester.
#
# This is like the test multi/six_surface14.i
# Plasticity models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
# SimpleTester3 with a = 0 and b = 1 and strength = 1.1
# SimpleTester4 with a = 1 and b = 0 and strength = 1.1
# SimpleTester5 with a = 1 and b = 1 and strength = 3.1
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# trial stress_yy = 2.1 and stress_zz = 3.0
#
# This is similar to three_surface14.i, and a description is found there.
# The result should be stress_zz=1=stress_yy, with internal0=2
# and internal1=1.1




[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple3]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple4]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple5]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 2.1 0  0 0 3.0'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2 simple3 simple4 simple5'
    tangent_operator = linear
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/elastic_thermal_patch/elastic_thermal_patch_rz_smp_sm.i

#
# This problem is modified from the Abaqus verification manual:
#   "1.5.4 Patch test for axisymmetric elements"
# The original stress solution is given as:
#   xx = yy = zz = 2000
#   xy = 400
#
# Here, E=1e6 and nu=0.25.
# However, with a +100 degree change in temperature and a coefficient
#   of thermal expansion of 1e-6, the solution becomes:
#   xx = yy = zz = 1800
#   xy = 400
#   since
#   E*(1-nu)/(1+nu)/(1-2*nu)*(1+2*nu/(1-nu))*(1e-3-1e-4) = 1800
#
# Also,
#
#   dSrr   dSrz   Srr-Stt
#   ---- + ---- + ------- + br = 0
#    dr     dz       r
#
# and
#
#   dSrz   Srz   dSzz
#   ---- + --- + ---- + bz = 0
#    dr     r     dz
#
# where
#   Srr = stress in rr
#   Szz = stress in zz
#   Stt = stress in theta-theta
#   Srz = stress in rz
#   br  = body force in r direction
#   bz  = body force in z direction
#
# This test is meant to exercise the Jacobian.  To that end, the body
# force has been turned off.  This makes the results differ slightly
# from the original values, but requires a correct Jacobian for minimal
# iterations.  Iteration plotting is turned on to ensure that the
# number of iterations needed does not increase.

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_thermal_patch_rz_test.e
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '1e-3*x'
  [../]
  [./uz]
    type = ParsedFunction
    value = '1e-3*(x+y)'
  [../]
  [./body]
    type = ParsedFunction
    value = '-400/x'
  [../]
  [./temp]
    type = ParsedFunction
    value = '117.56+100*t'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    temp = temp
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
    execute_on = timestep_end
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
    execute_on = timestep_end
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = ur
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = uz
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = 10
    function = temp
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    bulk_modulus = 666666.6666666667
    poissons_ratio = 0.25

    temp = temp
    thermal_expansion = 1e-6
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = 1

    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    block = 1
    density = 0.283
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-11
  nl_rel_tol = 1e-12

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[]

[Outputs]
  file_base = elastic_thermal_patch_rz_smp_out
  [./exodus]
    type = Exodus
    execute_on = 'initial timestep_end nonlinear'
    nonlinear_residual_dt_divisor = 100
  [../]
[]

modules/tensor_mechanics/test/tests/weak_plane_tensile/small_deform2.i

# checking for small deformation
# A single element is stretched by 1E-6m in x,y and z directions.
# stress_zz = Youngs Modulus*Strain = 2E6*1E-6 = 2 Pa
# wpt_tensile_strength is set to 5Pa
# Since maximum stress which is 2Pa is less than tension cutoff, plastic yeilding shoud not be observed.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = x_disp
    boundary = front
    value = 1E-6
  [../]
  [./topy]
    type = DirichletBC
    variable = y_disp
    boundary = front
    value = 1E-6
  [../]
  [./topz]
    type = DirichletBC
    variable = z_disp
    boundary = front
    value = 1E-6
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 5
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wpt
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-5
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/thermo_mech/thermo_mech_sm.i

#Run with 4 procs

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]

  [./temp]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./bottom_temp]
    type = DirichletBC
    variable = temp
    boundary = 1
    value = 10.0
  [../]
[]

[Materials]
  [./constant]
    type = LinearIsotropicMaterial
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp

    youngs_modulus = 1.0
    poissons_ratio = .3
    thermal_expansion = 1e-5
  [../]

  [./heat1]
    type = HeatConductionMaterial
    block = 1

    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    block = 1
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-14
  l_tol = 1e-3

  l_max_its = 100

  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = thermo_mech_out
  exodus = true
[]

modules/porous_flow/examples/tutorial/03.i

# Darcy flow with heat advection and conduction
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
    input = annular
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
  [../]
  [./temperature]
    initial_condition = 293
    scaling = 1E-8
  [../]
[]

[PorousFlowBasicTHM]
  porepressure = porepressure
  temperature = temperature
  coupling_type = ThermoHydro
  gravity = '0 0 0'
  fp = the_simple_fluid
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1E6
    boundary = injection_area
  [../]
  [./constant_injection_temperature]
    type = DirichletBC
    variable = temperature
    value = 313
    boundary = injection_area
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      viscosity = 1.0E-3
      density0 = 1000.0
      thermal_expansion = 0.0002
      cp = 4194
      cv = 4186
      porepressure_coefficient = 0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.8
    solid_bulk_compliance = 2E-7
    fluid_bulk_modulus = 1E7
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1E-14 0 0   0 1E-14 0   0 0 1E-14'
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityConst
    block = caps
    permeability = '1E-15 0 0   0 1E-15 0   0 0 1E-16'
  [../]

  [./thermal_expansion]
    type = PorousFlowConstantThermalExpansionCoefficient
    biot_coefficient = 0.8
    drained_coefficient = 0.003
    fluid_coefficient = 0.0002
  [../]
  [./rock_internal_energy]
    type = PorousFlowMatrixInternalEnergy
    density = 2500.0
    specific_heat_capacity = 1200.0
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '10 0 0  0 10 0  0 0 10'
    block = 'caps aquifer'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E5
  nl_abs_tol = 1E-10
[]

[Outputs]
  exodus = true
[]

modules/combined/examples/phase_field-mechanics/hex_grain_growth_2D_eldrforce.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 17
  nz = 0
  xmax = 1000
  ymax = 866
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 2
[]

[GlobalParams]
  op_num = 3
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[UserObjects]
  [./hex_ic]
    type = PolycrystalHex
    coloring_algorithm = bt
    grain_num = 36
    x_offset = 0.0
    output_adjacency_matrix = true
  [../]
  [./euler_angle_file]
    type = EulerAngleFileReader
    file_name = grn_36_test2_2D.tex
  [../]
  [./grain_tracker]
    type = GrainTrackerElasticity
    threshold = 0.2
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
    flood_entity_type = ELEMENTAL

    fill_method = symmetric9
    C_ijkl = '1.27e5 0.708e5 0.708e5 1.27e5 0.708e5 1.27e5 0.7355e5 0.7355e5 0.7355e5'
    euler_angle_provider = euler_angle_file
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = hex_ic
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./elastic_strain11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain12]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./C1111]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./euler_angle]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
  [./PolycrystalElasticDrivingForce]
  [../]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./elastic_strain11]
    type = RankTwoAux
    variable = elastic_strain11
    rank_two_tensor = elastic_strain
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./elastic_strain22]
    type = RankTwoAux
    variable = elastic_strain22
    rank_two_tensor = elastic_strain
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./elastic_strain12]
    type = RankTwoAux
    variable = elastic_strain12
    rank_two_tensor = elastic_strain
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    execute_on = timestep_end
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    execute_on = timestep_end
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
  [../]
  [./C1111]
    type = RankFourAux
    variable = C1111
    rank_four_tensor = elasticity_tensor
    index_l = 0
    index_j = 0
    index_k = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./vonmises_stress]
    type = RankTwoScalarAux
    variable = vonmises_stress
    rank_two_tensor = stress
    scalar_type = VonMisesStress
  [../]
  [./euler_angle]
    type = OutputEulerAngles
    variable = euler_angle
    euler_angle_provider = euler_angle_file
    grain_tracker = grain_tracker
    output_euler_angle = 'phi1'
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
      variable = 'gr0 gr1 gr2'
    [../]
  [../]
  [./top_displacement]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = -50.0
  [../]
  [./x_anchor]
    type = DirichletBC
    variable = disp_x
    boundary = 'left right'
    value = 0.0
  [../]
  [./y_anchor]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    block = 0
    T = 500 # K
    wGB = 15 # nm
    GBmob0 = 2.5e-6 # m^4/(Js) from Schoenfelder 1997
    Q = 0.23 # Migration energy in eV
    GBenergy = 0.708 # GB energy in J/m^2
  [../]
  [./ElasticityTensor]
    type = ComputePolycrystalElasticityTensor
    block = 0
    grain_tracker = grain_tracker
  [../]
  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]
[]

[Postprocessors]
  [./dofs]
    type = NumDOFs
  [../]
  [./dt]
    type = TimestepSize
  [../]
  [./run_time]
    type = PerfGraphData
    section_name = "Root"
    data_type = total
  [../]
  [./bnd_length]
    type = GrainBoundaryArea
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    off_diag_row = 'disp_x disp_y'
    off_diag_column = 'disp_y disp_x'
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -pc_hypre_boomeramg_strong_threshold'
  petsc_options_value = 'hypre boomeramg 31 0.7'
  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 40
  nl_rel_tol = 1.0e-7
  start_time = 0.0
  num_steps = 50
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1.5
    growth_factor = 1.2
    cutback_factor = 0.8
    optimal_iterations = 8
  [../]
  [./Adaptivity]
    initial_adaptivity = 2
    refine_fraction = 0.8
    coarsen_fraction = 0.05
    max_h_level = 3
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/diff01.i

# Test the Jacobian of the diffusive component of the PorousFlowDisperiveFlux kernel.
# By setting disp_long and disp_trans to zero, the purely diffusive component of the flux
# can be isolated.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
[]

[ICs]
  [./pp]
    type = RandomIC
    variable = pp
    max = 2e1
    min = 1e1
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = pp
    gravity = '1 0 0'
    disp_long = 0
    disp_trans = 0
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    gravity = '1 0 0'
    disp_long = 0
    disp_trans = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1e7
      density0 = 10
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temp]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1e-2 1e-1'
    tortuosity = '0.1'
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
[]

[Preconditioning]
  active = smp
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/thewarehouse/test1.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 100
    ny = 100
  []
  [manyblocks]
    input = gen
    type = ElemUniqueSubdomainsGenerator
  []
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[Materials]
  [mat_props]
    type = GenericConstantMaterial
    prop_names = diffusivity
    prop_values = 2
  []
[]

[UserObjects]
[]

[Postprocessors]
  [avg_flux_right]
    # Computes -\int(exp(y)+1) from 0 to 1 which is -2.718281828
    type = SideFluxAverage
    variable = u
    boundary = right
    diffusivity = diffusivity
  []
  [u1_avg]
    type = ElementAverageValue
    variable = u
    execute_on = 'initial timestep_end'
  []

  [u2_avg]
    type = ElementAverageValue
    variable = u
    execute_on = 'initial timestep_end'
  []

  [diff]
    type = DifferencePostprocessor
    value1 = u1_avg
    value2 = u2_avg
    execute_on = 'initial timestep_end'
  []
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
[]

test/tests/userobjects/Terminator/terminator.i

###########################################################
# This is a test of the UserObject System. The
# Terminator UserObject executes independently after
# each solve and can terminate the solve early due to
# user-defined criteria. (Type: GeneralUserObject)
#
# @Requirement F6.40
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 6
  xmin = -15.0
  xmax = 15.0
  ymin = -3.0
  ymax = 3.0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1
  [../]
[]

[Postprocessors]
  [./max_c]
    type = NodalMaxValue
    variable = c
    execute_on = 'initial timestep_end'
  [../]
[]

[UserObjects]
  [./arnold]
    type = Terminator
    expression = 'max_c < 0.5'
  [../]
[]

[Kernels]
  [./cres]
    type = Diffusion
    variable = c
  [../]

  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[BCs]
  [./c]
    type = DirichletBC
    variable = c
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  dt = 100
  num_steps = 6
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/relaxation/picard_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
  [./time_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 2
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/poro_elasticity/pp_generation_unconfined_constM.i

# A sample is constrained on all sides, except its top
# and its boundaries are
# also impermeable.  Fluid is pumped into the sample via a
# volumetric source (ie kg/second per cubic meter), and the
# rise in the top surface, porepressure, and stress are observed.
#
# In the standard poromechanics scenario, the Biot Modulus is held
# fixed and the source, s, has units m^3/second/m^3.  Then the expected result
# is
# strain_zz = disp_z = BiotCoefficient*BiotModulus*s*t/((bulk + 4*shear/3) + BiotCoefficient^2*BiotModulus)
# porepressure = BiotModulus*(s*t - BiotCoefficient*strain_zz)
# stress_xx = (bulk - 2*shear/3)*strain_zz   (remember this is effective stress)
# stress_zz = (bulk + 4*shear/3)*strain_zz   (remember this is effective stress)
#
# In porous_flow, however, the source has units kg/second/m^3.  The ratios remain
# fixed:
# stress_xx/strain_zz = (bulk - 2*shear/3) = 1 (for the parameters used here)
# stress_zz/strain_zz = (bulk + 4*shear/3) = 4 (for the parameters used here)
# porepressure/strain_zz = 13.3333333 (for the parameters used here)
#
# Expect
# disp_z = 0.3*10*s*t/((2 + 4*1.5/3) + 0.3^2*10) = 0.612245*s*t
# porepressure = 10*(s*t - 0.3*0.612245*s*t) = 8.163265*s*t
# stress_xx = (2 - 2*1.5/3)*0.612245*s*t = 0.612245*s*t
# stress_zz = (2 + 4*shear/3)*0.612245*s*t = 2.44898*s*t
# The relationship between the constant poroelastic source
# s (m^3/second/m^3) and the PorousFlow source, S (kg/second/m^3) is
# S = fluid_density * s = s * exp(porepressure/fluid_bulk)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1e-5
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = porepressure
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = porepressure
    gravity = '0 0 0'
    fluid_component = 0
  [../]
  [./source]
    type = BodyForce
    function = '0.1*exp(8.163265306*0.1*t/3.3333333333)'
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 3.3333333333
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityHMBiotModulus
    porosity_zero = 0.1
    biot_coefficient = 0.3
    solid_bulk = 2
    constant_fluid_bulk_modulus = 3.3333333333
    constant_biot_modulus = 10.0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0   0 1 0   0 0 1' # unimportant
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0 # unimportant in this fully-saturated situation
    phase = 0
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]
[]

[Functions]
  [./stress_xx_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'stress_xx zdisp'
  [../]
  [./stress_zz_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'stress_zz zdisp'
  [../]
  [./p_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'p0 zdisp'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = pp_generation_unconfined_constM
  [./csv]
    type = CSV
  [../]
[]

test/tests/bcs/conditional_bc/conditional_bc_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right_dirichlet]
    type = OnOffDirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
  [./right_neumann]
    type = OnOffNeumannBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  start_time = 0
  end_time = 1
  dt = 0.1


  solve_type = 'PJFNK'
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/phase_field/examples/anisotropic_transport/diffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  xmin = -15.0
  ymin = -15.0
  xmax = 15.0
  ymax = 15.0
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0.0
      y1 = 0.0
      radius = 3
      int_width = 1
      invalue = 1
      outvalue = 0
    [../]
  [../]
[]

[Kernels]
  [./cres]
    type = MatAnisoDiffusion
    diffusivity = D
    variable = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./D]
    type = ConstantAnisotropicMobility
    tensor = '.505 .495 .0
              .495 .505 .0
              .0   .0   .0'
    M_name = D
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  scheme = bdf2

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm      lu'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 50
  nl_rel_tol = 1.0e-10

  dt = 1.0
  num_steps = 20
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

test/tests/userobjects/toggle_mesh_adaptivity/toggle_mesh_adaptivity.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Problem]
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
[]

[Adaptivity]
  cycles_per_step = 1
  marker = marker
  max_h_level = 2
  [./Markers]
    [./marker]
      type = BoxMarker
      bottom_left = '0.35 0.25 0'
      top_right = '0.5 0.5 0'
      inside = refine
      outside = coarsen
    [../]
  [../]
[]

[UserObjects]
  [./mesh_adaptivity_off]
    type = ToggleMeshAdaptivity
    mesh_adaptivity = 'off'
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    print_mesh_changed_info = true
  [../]
[]

test/tests/postprocessors/old_vpp_value/old_vpp_value.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[VectorPostprocessors]
  [./point_sample]
    type = PointValueSampler
    variable = 'u'
    points = '0.1 0.1 0'
    sort_by = x

    outputs = none
  [../]
[]

[Postprocessors]
  [./old_vpp_value]
    type = UseOldVectorPostprocessor
    vpp = point_sample
    vector_name = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/flux_limited_TVD_pflow/jacobian_05.i

# Checking the Jacobian of Flux-Limited TVD Advection, 2 phases, 2 components, using flux_limiter_type != None
#
# Here we use snes_check_jacobian instead of snes_type=test.  The former just checks the Jacobian for the
# random initial conditions, while the latter checks for u=1 and u=-1
#
# The Jacobian is correct for u=1 and u=-1, but the finite-difference scheme used by snes_type=test gives the
# wrong answer.
# For u=constant, the Kuzmin-Turek scheme adds as much antidiffusion as possible, resulting in a central-difference
# version of advection (flux_limiter = 1).  This is correct, and the Jacobian is calculated correctly.
# However, when computing the Jacobian using finite differences, u is increased or decreased at a node.
# This results in that node being at a maximum or minimum, which means no antidiffusion should be added
# (flux_limiter = 0).  This corresponds to a full-upwind scheme.  So the finite-difference computes the
# Jacobian in the full-upwind scenario, which is incorrect (the original residual = 0, after finite-differencing
# the residual comes from the full-upwind scenario).
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 5
[]

[GlobalParams]
  gravity = '1.1 2 -0.5'
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]


[ICs]
  [./ppwater]
    type = FunctionIC
    variable = ppwater
    function = 'if(x<1,0,if(x<4,sin(x-1),1))'
  [../]
  [./ppgas]
    type = FunctionIC
    variable = ppgas
    function = 'x*(6-x)/6'
  [../]
  [./massfrac_ph0_sp0]
    type = FunctionIC
    variable = massfrac_ph0_sp0
    function = 'x/6'
  [../]
  [./massfrac_ph1_sp0]
    type = FunctionIC
    variable = massfrac_ph1_sp0
    function = '1-x/7'
  [../]
[]

[Kernels]
  [./flux_ph0_sp0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = ppwater
    advective_flux_calculator = advective_flux_calculator_ph0_sp0
  [../]
  [./flux_ph0_sp1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = ppgas
    advective_flux_calculator = advective_flux_calculator_ph0_sp1
  [../]
  [./flux_ph1_sp0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = massfrac_ph0_sp0
    advective_flux_calculator = advective_flux_calculator_ph1_sp0
  [../]
  [./flux_ph1_sp1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = massfrac_ph1_sp0
    advective_flux_calculator = advective_flux_calculator_ph1_sp1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1.4
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas massfrac_ph0_sp0 massfrac_ph1_sp0'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1
    m = 0.5
  [../]
  [./advective_flux_calculator_ph0_sp0]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = minmod
    phase = 0
    fluid_component = 0
  [../]
  [./advective_flux_calculator_ph0_sp1]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = vanleer
    phase = 0
    fluid_component = 1
  [../]
  [./advective_flux_calculator_ph1_sp0]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = mc
    phase = 1
    fluid_component = 0
  [../]
  [./advective_flux_calculator_ph1_sp1]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = superbee
    phase = 1
    fluid_component = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.21 0 0  0 1.5 0  0 0 0.8'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options = '-snes_check_jacobian'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Linear # this is to force convergence even though the nonlinear residual is high: we just care about the Jacobian in this test
  end_time = 1
  num_steps = 1
  dt = 1
[]

test/tests/time_steppers/dt2/dt2_adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 15
  ny = 15
  elem_type = QUAD4
[]

[GlobalParams]
  slope = 1
  t_jump = 2
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = TEIC
    [../]
  [../]
[]

[Kernels]
  active = 'td diff ffn'

  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = TEJumpFFN
    variable = u
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = TEJumpBC
    variable = u
    boundary = '0 1 2 3'
  [../]
[]

[Postprocessors]
  active = 'dt'

  [./dt]
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient


  solve_type = 'PJFNK'

  nl_rel_tol = 1e-7
#  l_tol = 1e-5

  [./Adaptivity]
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
  [../]

  start_time = 0.0
  end_time = 5
  num_steps = 500000

  dtmax = 0.25

  [./TimeStepper]
    type = DT2
    dt = 0.1
    e_max = 3e-1
    e_tol = 1e-1
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  csv = false
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/sobol/sobol.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = SobolSampler
    num_rows = 3
    distributions = 'uniform_left uniform_right'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
    execute_on = INITIAL
    check_multiapp_execute_on = false
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

modules/combined/test/tests/mortar_tm/2d/frictionless_first/finite.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

test/tests/time_steppers/iteration_adaptive/adapt_tstep_grow_dtfunc_restart.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmax = 5
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 10
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = -1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  verbose = true
  petsc_options = -snes_ksp_ew
  petsc_options_iname = -ksp_gmres_restart
  petsc_options_value = 101
  line_search = none
  nl_rel_tol = 1e-8
  end_time = 20.0
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1.0
    optimal_iterations = 10
    time_t = '0.0 5.0'
    time_dt = '1.0 5.0'
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  checkpoint = true
[]

[Problem]
  restart_file_base = adapt_tstep_grow_dtfunc_out_cp/0003
[]

modules/combined/test/tests/elastic_patch/ad_elastic_patch_rz.i

#
# This problem is taken from the Abaqus verification manual:
#   "1.5.4 Patch test for axisymmetric elements"
# The stress solution is given as:
#   xx = yy = zz = 2000
#   xy = 400
#
# Since the strain is 1e-3 in all three directions, the new density should be
#   new_density = original_density * V_0 / V
#   new_density = 0.283 / (1 + 1e-3 + 1e-3 + 1e-3) = 0.282153

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_patch_rz.e
[]

[Variables]
  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules/TensorMechanics/Master/All]
  strain = SMALL
  incremental = true
  add_variables = true
  generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
[]

[Kernels]
  [./body]
    type = BodyForce
    variable = disp_y
    value = 1
    function = '-400/x'
  [../]

  [./heat]
    type = TimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = '1e-3*x'
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = '1e-3*(x+y)'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]
[]

[Materials]
  [./density]
    type = ADDensity
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  end_time = 1.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/executioners/time_period/time_period_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Functions]
  [./exact_p1]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]
  [./ffn_p1]
    type = ParsedFunction
    value = (x*x+y*y)-4*t
  [../]

  [./exact_p2]
    type = ParsedFunction
    value = t*((x*x*x)+(y*y*y))
  [../]
  [./ffn_p2]
    type = ParsedFunction
    value = (x*x*x+y*y*y)-6*t*(x+y)
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn1]
    type = BodyForce
    variable = u
    function = ffn_p1
  [../]

  [./ffn2]
    type = BodyForce
    variable = u
    function = ffn_p2
  [../]
[]

[BCs]
  [./all1]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_p1
  [../]
  [./all2]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_p2
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  dt = 0.1
  num_steps = 10
[]

[Controls]
  [./first_period]
    type = TimePeriod
    start_time = 0.0
    end_time = 0.45
    enable_objects = '*/ffn1 */all1'
    disable_objects = '*/ffn2 */all2'
    execute_on = 'initial timestep_begin'
    set_sync_times = true
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/vectorpostprocessors/dynamic_point_sampler/dynamic_point_sampler.i

[Mesh]
  type = GeneratedMesh
  nx = 5
  ny = 5
  dim = 2
[]

[Variables]
  [u]
  []
[]

[Functions]
  [forcing_func]
    type = ParsedFunction
    value = alpha*alpha*pi*pi*sin(alpha*pi*x)
    vars = 'alpha'
    vals = '4'
  []

  [u_func]
    type = ParsedGradFunction
    value = sin(alpha*pi*x)
    grad_x   = alpha*pi*sin(alpha*pi*x)
    vars = 'alpha'
    vals = '4'
  []
[]

[Kernels]
  [diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  []

  [forcing]
    type = BodyForce
    variable = u
    function = forcing_func
  []

  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = 'u'
    boundary = 'left'
    value = 0
  []

  [right]
    type = DirichletBC
    variable = 'u'
    boundary = 'right'
    value = 0
  []
[]

[Executioner]
  type = Transient
  num_steps = 7
  dt = 0.1

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [l2_error]
    type = ElementL2Error
    variable = u
    function = u_func
  []

  [dofs]
    type = NumDOFs
  []
[]

[Adaptivity]
  max_h_level = 3
  marker = error
  [Indicators]
    [jump]
      type = GradientJumpIndicator
      variable = u
    []
  []
  [Markers]
    [error]
      type = ErrorFractionMarker
      indicator = jump
      coarsen = 0.1
      refine = 0.3
    []
  []
[]

[VectorPostprocessors]
  [dynamic_line_sampler]
    type = DynamicPointValueSampler
    variable = u
    start_point = '0 0.5 0'
    end_point = '1 0.5 0'
    num_points = 6
    sort_by = x
    execute_on = 'initial timestep_end'
  []
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/MultiPhase/switchingfunction3phasematerial.i

# This is a test of the SwitchingFunction3PhaseMaterial, a switching function
# used in a 3-phase phase-field model to prevent formation of the third phase
# at the interface between the two other phases
# See Folch and Plapp, Phys. Rev. E, v 72, 011602 (2005) for details

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 0.1
  nx = 20
  ny = 2
  elem_type = QUAD4
[]

[GlobalParams]
  derivative_order = 0
  outputs = exodus
[]

[AuxVariables]
  [./eta1]
    [./InitialCondition]
      type = FunctionIC
      function = x
    [../]
  [../]
  [./eta2]
    [./InitialCondition]
      type = FunctionIC
      function = 1.0-x
    [../]
  [../]
  [./eta3]
    [./InitialCondition]
      type = ConstantIC
      value = 0.0
    [../]
  [../]
[]

[Materials]
  [./h_material_1]
    type = SwitchingFunction3PhaseMaterial
    f_name = h_i1
    eta_i = eta1
    eta_j = eta2
    eta_k = eta3
    outputs = exodus
  [../]
# Next we reverse eta2 and eta3 to make sure the switching function is symmetric
# with respect to interchanging these two, as it is designed to be
  [./h_material_2]
    type = SwitchingFunction3PhaseMaterial
    f_name = h_i2
    eta_i = eta1
    eta_j = eta3
    eta_k = eta2
    outputs = exodus
  [../]
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  execute_on = 'TIMESTEP_END'
  exodus = true
[]

modules/porous_flow/test/tests/numerical_diffusion/no_action.i

# Using upwinded and mass-lumped PorousFlow Kernels
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '1 - x'
  [../]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = tracer
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = tracer
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = porepressure
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = porepressure
  [../]
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1
    boundary = left
  [../]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_component_1]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 1
    use_mobility = true
    flux_function = 1E3
  [../]
  [./remove_component_0]
    type = PorousFlowPiecewiseLinearSink
    variable = tracer
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 0
    use_mobility = true
    flux_function = 1E3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      thermal_expansion = 0
      viscosity = 1.0
      density0 = 1000.0
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure tracer'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = tracer
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = the_simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-2 0 0   0 1E-2 0   0 0 1E-2'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 101
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-1
  nl_abs_tol = 1E-8
  timestep_tolerance = 1E-3
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/outputs/vtk/vtk_parallel.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  vtk = true
[]

modules/tensor_mechanics/test/tests/tensile/small_deform3.i

# checking for small deformation
# A single element is stretched by "ep" in the z and x directions
# This causes the return direction to be along the hypersurface sigma_I = sigma_II
# tensile_strength is set to 1Pa, tip_smoother = 0, edge_smoother = 25degrees
# Then A + B + C = 0.609965
#
# The trial stress is (la, 0, la), with mean stress 2la/3, and bar(sigma)=sqrt(secondInvariant)=la/sqrt(3)
# If this sits on the yield surface then
# 2la/3 + la*K/sqrt(3) - 1 = 0
# So la = 0.9815.  Therefore, with young's modulus = 2MPa, we need "ep" = 0.9815/4.  I set
# "ep" = 0.25 and observe a tiny amount of yielding


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.25E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.25E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./mc]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    yield_function_tolerance = 1E-6
    tensile_tip_smoother = 0.0
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/contact_verification/hertz_cyl/quart_symm_q8/hertz_cyl_qsym_1deg_template1.i

[GlobalParams]
  order = SECOND
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = hertz_cyl_qsym_1deg_q8.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./disp_ramp_vert]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. -0.0020 -0.0020'
  [../]
  [./disp_ramp_zero]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 0.0 0.0'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 4
    paired_boundary = 3
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./disp_x281]
    type = NodalVariableValue
    nodeid = 280
    variable = disp_x
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_y
    boundary = '1 3'
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2 3'
    value = 0.0
  [../]
  [./top_y_disp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = disp_ramp_vert
  [../]
[]

[Materials]
  [./stuff1_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e10
    poissons_ratio = 0.0
  [../]
  [./stuff1_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./stuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./stuff2_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff2_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./stuff2_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
  [./stuff3_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '3'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff3_strain]
    type = ComputeFiniteStrain
    block = '3'
  [../]
  [./stuff3_stress]
    type = ComputeFiniteStrainElasticStress
    block = '3'
  [../]
  [./stuff4_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '4'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff4_strain]
    type = ComputeFiniteStrain
    block = '4'
  [../]
  [./stuff4_stress]
    type = ComputeFiniteStrainElasticStress
    block = '4'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100

  start_time = 0.0
  dt = 0.1
  dtmin = 0.1
  num_steps = 10
  end_time = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '4'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x281 top_react_x top_react_y x_disp y_disp cont_press'
    start_time = 0.9
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./interface]
    master = 3
    slave = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+11
  [../]
[]

modules/combined/test/tests/thermal_elastic/thermal_elastic_sm.i

# Patch Test

# This test is designed to compute constant xx, yy, zz, xy, yz, and xz
#  stress on a set of irregular hexes.  The mesh is composed of one
#  block with seven elements.  The elements form a unit cube with one
#  internal element.  There is a nodeset for each exterior node.

# The cube is displaced by 1e-6 units in x, 2e-6 in y, and 3e-6 in z.
#  The faces are sheared as well (1e-6, 2e-6, and 3e-6 for xy, yz, and
#  zx).  This gives a uniform strain/stress state for all six unique
#  tensor components.  This displacement is again applied in the second
#  step.

# With Young's modulus at 1e6 and Poisson's ratio at 0, the shear
#  modulus is 5e5 (G=E/2/(1+nu)).  Therefore, for the mechanical strain,
#
#  stress xx = 1e6 * 1e-6 = 1
#  stress yy = 1e6 * 2e-6 = 2
#  stress zz = 1e6 * 3e-6 = 3
#  stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 5e5 * 2e-6 / 2 = 1
#  stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5

# Young's modulus is a function of temperature for this test.  The
#  temperature changes from 100 to 500.  The Young's modulus drops
#  due to that temperature change from 1e6 to 6e5.

# Poisson's ratio also is a function of temperature and changes from
#  0 to 0.25.

# At the end of the temperature ramp, E=6e5 and nu=0.25.  This gives
#  G=2.4e=5.  lambda=E*nu/(1+nu)/(1-2*nu)=2.4E5.  The final stress
#  is therefore

#  stress xx = 2.4e5 * 12e-6 + 2*2.4e5*2e-6 = 3.84
#  stress yy = 2.4e5 * 12e-6 + 2*2.4e5*4e-6 = 4.80
#  stress zz = 2.4e5 * 12e-6 + 2*2.4e5*6e-6 = 5.76
#  stress xy = 2 * 2.4e5 * 2e-6 / 2 = 0.48
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 2.4e5 * 4e-6 / 2 = 0.96
#  stress xz = 2 * 2.4e5 * 6e-6 / 2 = 1.44


[Mesh]
  file = thermal_elastic.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./ramp1]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 1e-6
  [../]
  [./ramp2]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 2e-6
  [../]
  [./ramp3]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 3e-6
  [../]
  [./ramp4]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 4e-6
  [../]
  [./ramp6]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 6e-6
  [../]
  [./tempFunc]
    type = PiecewiseLinear
    x = '0     1     2'
    y = '100.0 100.0 500.0'
  [../]
  [./ym_func]
    type = PiecewiseLinear
    x = '100 500'
    y = '1e6 6e5'
  [../]
  [./pr_func]
    type = PiecewiseLinear
    x = '100 500'
    y = '0   0.25'
  [../]
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

  [./temp]
    initial_condition = 100.0
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_xz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xz
    index = 5
  [../]
[]

[BCs]
  [./node1_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./node1_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = ramp2
  [../]
  [./node1_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 1
    function = ramp3
  [../]

  [./node2_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = ramp1
  [../]
  [./node2_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = ramp2
  [../]
  [./node2_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 2
    function = ramp6
  [../]

  [./node3_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 3
    function = ramp1
  [../]
  [./node3_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./node3_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 3
    function = ramp3
  [../]

  [./node4_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./node4_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
  [./node4_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]

  [./node5_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 5
    function = ramp1
  [../]
  [./node5_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = ramp4
  [../]
  [./node5_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 5
    function = ramp3
  [../]

  [./node6_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 6
    function = ramp2
  [../]
  [./node6_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 6
    function = ramp4
  [../]
  [./node6_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 6
    function = ramp6
  [../]

  [./node7_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 7
    function = ramp2
  [../]
  [./node7_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 7
    function = ramp2
  [../]
  [./node7_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 7
    function = ramp3
  [../]

  [./node8_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 8
    function = ramp1
  [../]
  [./node8_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 8
    function = ramp2
  [../]
  [./node8_z]
    type = DirichletBC
    variable = disp_z
    boundary = 8
    value = 0.0
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = '10 12'
    function = tempFunc
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = '1 2 3 4 5 6 7'

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    bulk_modulus = 0.333333333333333e6
    shear_modulus = 0.5e6
    youngs_modulus_function = ym_func
    poissons_ratio_function = pr_func

    temp = temp

    increment_calculation = eigen
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = '1 2 3 4 5 6 7'

    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    block = '1 2 3 4 5 6 7'
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-9

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  exodus = true
  file_base = thermal_elastic_out
[]

test/tests/geomsearch/2d_moving_penetration/pl_test1.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test1.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test1_out
  exodus = true
[]

modules/combined/test/tests/contact/sm/8ElemTensionRelease_sm.i

[Mesh]
  file = 8ElemTensionRelease.e
  partitioner = centroid
  centroid_partitioner_direction = x
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1      2 3'
    y = '0 0.0001 0 -.0001'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./status]
  [../]
  [./pid]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = frictionless
    tangential_tolerance = 0.01
    system = Constraint
  [../]
[]

[AuxKernels]
  [./pid]
    type = ProcessorIDAux
    variable = pid
    execute_on = 'initial timestep_end'
  [../]
  [./status]
    type = PenetrationAux
    quantity = mechanical_status
    variable = status
    boundary = 3
    paired_boundary = 2
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./lateral]
    type = DirichletBC
    variable = disp_x
    boundary = '1 4'
    value = 0
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = up
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    block = 2

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-09
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 10
  dt = 0.1
  num_steps = 30

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/planar_hard4.i

# apply repeated stretches in x direction, and smaller stretches along the y and z directions,
# so that sigma_II = sigma_III,
# which means that lode angle = -30deg.
# Both return to the edge (at lode_angle=-30deg, ie 000101) and tip are experienced.
#
# It is checked that the yield functions are less than their tolerance values
# It is checked that the cohesion hardens correctly

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.05E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.05E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if((a<1E-5)&(b<1E-5)&(c<1E-5)&(d<1E-5)&(g<1E-5)&(h<1E-5),0,abs(a)+abs(b)+abs(c)+abs(d)+abs(g)+abs(h))'
    vars = 'a b c d g h'
    vals = 'f0 f1 f2 f3 f4 f5'
  [../]
  [./coh_analytic]
    type = ParsedFunction
    value = '20-10*exp(-1E5*intnl)'
    vars = intnl
    vals = internal
  [../]
  [./coh_from_yieldfcns]
    type = ParsedFunction
    value = '(f0+f1-(sxx+syy)*sin(phi))/(-2)/cos(phi)'
    vars = 'f0 f1 sxx syy phi'
    vals = 'f0 f1 s_xx s_yy 0.8726646'
  [../]
  [./should_be_zero_coh]
    type = ParsedFunction
    value = 'if(abs(a-b)<1E-6,0,1E6*abs(a-b))'
    vars = 'a b'
    vals = 'Coh_analytic Coh_moose'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn5]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn0]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn0
  [../]
  [./yield_fcn1]
    type = MaterialStdVectorAux
    index = 1
    property = plastic_yield_function
    variable = yield_fcn1
  [../]
  [./yield_fcn2]
    type = MaterialStdVectorAux
    index = 2
    property = plastic_yield_function
    variable = yield_fcn2
  [../]
  [./yield_fcn3]
    type = MaterialStdVectorAux
    index = 3
    property = plastic_yield_function
    variable = yield_fcn3
  [../]
  [./yield_fcn4]
    type = MaterialStdVectorAux
    index = 4
    property = plastic_yield_function
    variable = yield_fcn4
  [../]
  [./yield_fcn5]
    type = MaterialStdVectorAux
    index = 5
    property = plastic_yield_function
    variable = yield_fcn5
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn2
  [../]
  [./f3]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn3
  [../]
  [./f4]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn4
  [../]
  [./f5]
   type = PointValue
    point = '0 0 0'
    variable = yield_fcn5
  [../]
  [./yfcns_should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
  [./Coh_analytic]
    type = FunctionValuePostprocessor
    function = coh_analytic
  [../]
  [./Coh_moose]
    type = FunctionValuePostprocessor
    function = coh_from_yieldfcns
  [../]
  [./cohesion_difference_should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_coh
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 10
    value_residual = 20
    rate = 1E5
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8726646
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 1 #0.8726646 # 50deg
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    use_custom_returnMap = true
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = mc
  [../]
[]


[Executioner]
  end_time = 10
  dt = 2
  type = Transient
[]


[Outputs]
  file_base = planar_hard4
  exodus = false
  [./csv]
    type = CSV
    hide = 'f0 f1 f2 f3 f4 f5 s_xy s_xz s_yz Coh_analytic Coh_moose'
    execute_on = 'timestep_end'
  [../]
[]

modules/porous_flow/test/tests/actions/block_restricted_materials.i

# Tests that the actions to automatically add PorousFlowJoiner's and the correct
# qp or nodal version of each material work as expected when a material is block
# restricted. Tests both phase dependent properties (like relative permeability)
# as well as phase-independent materials (like porosity)

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    ny = 2
  []
  [./subdomain0]
    input = gen
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0 0 0'
    top_right = '1 0.5 0'
    block_id = 0
  [../]
  [./subdomain1]
    input = subdomain0
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0 0.5 0'
    top_right = '1 1 0'
    block_id = 1
  [../]
[]

[Variables]
  [./p0]
    initial_condition = 1
  [../]
  [./p1]
    initial_condition = 1.1
  [../]
[]

[AuxVariables]
  [./porosity]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./kl]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./kg]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
  [./kl]
    type = PorousFlowPropertyAux
    property = relperm
    variable = kl
    phase = 0
  [../]
  [./kg]
    type = PorousFlowPropertyAux
    property = relperm
    variable = kg
    phase = 1
  [../]
[]

[Kernels]
  [./p0]
    type = PorousFlowMassTimeDerivative
    variable = p0
  [../]
  [./p1]
    type = PorousFlowAdvectiveFlux
    gravity = '0 0 0'
    variable = p1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./fluid0]
      type = SimpleFluidProperties
    [../]
    [./fluid1]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = p0
    phase1_porepressure = p1
    capillary_pressure = pc
  [../]
  [./krl0]
    type = PorousFlowRelativePermeabilityConst
    kr = 0.7
    phase = 0
    block = 0
  [../]
  [./krg0]
    type = PorousFlowRelativePermeabilityConst
    kr = 0.8
    phase = 1
    block = 0
  [../]
  [./krl1]
    type = PorousFlowRelativePermeabilityConst
    kr = 0.5
    phase = 0
    block = 1
  [../]
  [./krg1]
    type = PorousFlowRelativePermeabilityConst
    kr = 0.4
    phase = 1
    block = 1
  [../]
  [./perm]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 1 0 0 0 1'
  [../]
  [./fluid0]
    type = PorousFlowSingleComponentFluid
    fp = fluid0
    phase = 0
  [../]
  [./fluid1]
    type = PorousFlowSingleComponentFluid
    fp = fluid1
    phase = 1
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./porosity0]
    type = PorousFlowPorosityConst
    porosity = 0.1
    block = 0
  [../]
  [./porosity1]
    type = PorousFlowPorosityConst
    porosity = 0.2
    block = 1
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1
  nl_abs_tol = 1e-10
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'p0 p1'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/abort/abort.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  nx = 10

  xmin = 0.0
  xmax = 1.0

[]

#still need BC for Energy, IC's for both.
[Variables]
  active = 'Time'

  [./Time]
    order =  FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[Functions]
  active = 'func'

  [./func]
    type = ParsedFunction
    value = 2.0*t
  [../]
[]

[Kernels]
  active = 't_time func_time'

  [./t_time]
    type = TimeDerivative
    variable = Time
  [../]

  [./func_time]
    type = BodyForce
    variable = Time
    function = func
  [../]
[]

[BCs]
  active = 'Top_Temperature'

  [./Top_Temperature]
    type = NeumannBC
    variable = Time
    boundary = 'left right'
  [../]

[]

[Executioner]
  type = Transient
  #scheme = 'BDF2'
  #scheme = 'crank-nicolson'
  start_time = 0
  num_steps = 4
  dt = 1000000000

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

  steady_state_tolerance = .00000000000000001
  steady_state_detection = true
  nl_abs_tol = 1e-15
  petsc_options = '-snes_converged_reason'
  abort_on_solve_fail = true
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/transfers/multiapp_conservative_transfer/sub_userobject.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 8
  xmax = 0.1
  ymax = 0.5
[]

[Variables]
  [./u]
    initial_condition = 1
  [../]
[]

[AuxVariables]
  [./layered_average_value]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./from_postprocessor]
    type = ElementIntegralVariablePostprocessor
    variable = layered_average_value
    execute_on = 'nonlinear TIMESTEP_END'
  [../]
[]

[Functions]
  [./axial_force]
    type = ParsedFunction
    value = 1000*y
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = axial_force
  [../]
[]

[AuxKernels]
  [./layered_aux]
    type = SpatialUserObjectAux
    variable = layered_average_value
    execute_on = 'nonlinear TIMESTEP_END'
    user_object = layered_average
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[UserObjects]
  [./layered_average]
    type = LayeredAverage
    variable = u
    direction = y
    num_layers = 4
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.001

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Problem]
  coord_type = rz
  type = FEProblem
[]

modules/porous_flow/test/tests/sinks/s09_fully_saturated.i

# Apply a piecewise-linear sink flux to the right-hand side and watch fluid flow to it
#
# This test has a single phase with two components.  The test initialises with
# the porous material fully filled with component=1.  The left-hand side is fixed
# at porepressure=1 and mass-fraction of the zeroth component being unity.
# The right-hand side has a very strong piecewise-linear flux that keeps the
# porepressure~0 at that side.  Fluid mass is extracted by this flux in proportion
# to the fluid component mass fraction.
#
# Therefore, the zeroth fluid component will flow from left to right (down the
# pressure gradient).
#
# The important DE is
# porosity * dc/dt = (perm / visc) * grad(P) * grad(c)
# which is true for c = mass-fraction, and very large bulk modulus of the fluid.
# For grad(P) constant in time and space (as in this example) this is just the
# advection equation for c, with velocity = perm / visc / porosity.  The parameters
# are chosen to velocity = 1 m/s.
# In the numerical world, and especially with full upwinding, the advection equation
# suffers from diffusion.  In this example, the diffusion is obvious when plotting
# the mass-fraction along the line, but the average velocity of the front is still
# correct at 1 m/s.
# This test uses the FullySaturated version of the flow Kernel.  This does not
# suffer from as much numerical diffusion as the standard PorousFlow Kernel since
# it does not employ any upwinding.
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp frac'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Variables]
  [./pp]
  [../]
  [./frac]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = 1-x
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = frac
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = pp
  [../]
  [./flux0]
    type = PorousFlowFullySaturatedDarcyFlow
    fluid_component = 0
    gravity = '0 0 0'
    variable = frac
  [../]
  [./flux1]
    type = PorousFlowFullySaturatedDarcyFlow
    fluid_component = 1
    gravity = '0 0 0'
    variable = pp
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1e10 # need large in order for constant-velocity advection
      density0 = 1 # almost irrelevant, except that the ability of the right BC to keep P fixed at zero is related to density_P0
      thermal_expansion = 0
      viscosity = 11
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = frac
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.1 0 0 0 1.1 0 0 0 1.1'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2 # irrelevant in this fully-saturated situation
    phase = 0
  [../]
[]

[BCs]
  [./lhs_fixed_a]
    type = DirichletBC
    boundary = 'left'
    variable = frac
    value = 1
  [../]
  [./lhs_fixed_b]
    type = DirichletBC
    boundary = 'left'
    variable = pp
    value = 1
  [../]
  [./flux0]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'right'
    pt_vals = '-100 100'
    multipliers = '-1 1'
    variable = frac # the zeroth comonent
    mass_fraction_component = 0
    use_mobility = false
    use_relperm = false
    fluid_phase = 0
    flux_function = 1E4
  [../]
  [./flux1]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'right'
    pt_vals = '-100 100'
    multipliers = '-1 1'
    variable = pp # comonent 1
    mass_fraction_component = 1
    use_mobility = false
    use_relperm = false
    fluid_phase = 0
    flux_function = 1E4
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_max_it -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu 10000 NONZERO 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-2
  end_time = 1
  nl_rel_tol = 1E-11
  nl_abs_tol = 1E-11
[]

[VectorPostprocessors]
  [./mf]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 100
    sort_by = x
    variable = frac
  [../]
[]

[Outputs]
  file_base = s09_fully_saturated
  [./console]
    type = Console
    execute_on = 'nonlinear linear'
  [../]
  [./csv]
    type = CSV
    sync_times = '0.1 0.5 1'
    sync_only = true
  [../]
  interval = 10
[]

modules/porous_flow/test/tests/jacobian/mass02.i

# 1phase
# vanGenuchten, constant-bulk density, constant porosity, 1component
# unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = -1
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 2
[]

[Outputs]
  exodus = false
[]

modules/tensor_mechanics/test/tests/shell/static/plate_bending.i

# Test for simply supported plate under uniform pressure

# One quarter of a 50 m x 50 m x 1m plate is modeled in this test.
# Pressure loading is applied on the top surface using nodal forces
# of magnitude -10 N on all nodes. This corresponds to a pressure (q) of
# -10.816 N/m^2.

# The FEM solution at (0,0), which is at the center of the full plate
# is -2.997084e-03 m.

# The analytical solution for displacement at center of plate obtained
# using a thin plate assumption for a square plate is
# w = 16 q a^4/(D*pi^6) \sum_{m = 1,3,5, ..}^\inf \sum_{n = 1,3,5, ..}^\inf  (-1)^{(m+n-2)/2}/(mn*(m^2+n^2)^2)

# The above solution is the Navier's series solution from the "Theory of plates
# and shells" by Timoshenko and Woinowsky-Krieger (1959).

# where a = 50 m, q = -10.816 N/m^2 and D = E/(12(1-v^2))
# The analytical series solution converges to 2.998535904e-03 m
# when the first 16 terms of the series are considered (i.e., until
# m & n = 7).

# The resulting relative error between FEM and analytical solution is
# 0.048%.


[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 25
    ny = 25
    xmin = 0.0
    xmax = 25.0
    ymin = 0.0
    ymax = 25.0
  [../]

  [./allnodes]
    type = BoundingBoxNodeSetGenerator
    input = gmg
    bottom_left = '0.0 0.0 0.0'
    top_right = '25.0 25.0 0.0'
    new_boundary = 101
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./symm_left_rot]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./symm_bottom_rot]
    type = DirichletBC
    variable = rot_x
    boundary = bottom
    value = 0.0
  [../]
  [./simply_support_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'right top bottom left'
    value = 0.0
  [../]
  [./simply_support_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'right top bottom left'
    value = 0.0
  [../]
  [./simply_support_z]
    type = DirichletBC
    variable = disp_z
    boundary = 'right top'
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = ConstantRate
    variable = disp_z
    boundary = 101
    rate = -10.0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dt = 1.0
  dtmin = 1.0
  end_time = 1.0
[]

[Kernels]
  [./solid_disp_x]
    type = ADStressDivergenceShell
    block = '0'
    component = 0
    variable = disp_x
    through_thickness_order = SECOND
  [../]
  [./solid_disp_y]
    type = ADStressDivergenceShell
    block = '0'
    component = 1
    variable = disp_y
    through_thickness_order = SECOND
  [../]
  [./solid_disp_z]
    type = ADStressDivergenceShell
    block = '0'
    component = 2
    variable = disp_z
    through_thickness_order = SECOND
  [../]
  [./solid_rot_x]
    type = ADStressDivergenceShell
    block = '0'
    component = 3
    variable = rot_x
    through_thickness_order = SECOND
  [../]
  [./solid_rot_y]
    type = ADStressDivergenceShell
    block = '0'
    component = 4
    variable = rot_y
    through_thickness_order = SECOND
  [../]
[]

[Materials]
  [./elasticity]
    type = ADComputeIsotropicElasticityTensorShell
    youngs_modulus = 1e9
    poissons_ratio = 0.3
    block = 0
    through_thickness_order = SECOND
  [../]
  [./strain]
    type = ADComputeIncrementalShellStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y'
    thickness = 1.0
    through_thickness_order = SECOND
  [../]
  [./stress]
    type = ADComputeShellStress
    block = 0
    through_thickness_order = SECOND
  [../]
[]

[Postprocessors]
  [./disp_z2]
    type = PointValue
    point = '0.0 0.0 0.0'
    variable = disp_z
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/truss/truss_3d.i

[Mesh]
  type = FileMesh
  file = truss_3d.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
 [./axial_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_over_l]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./area]
    order = CONSTANT
    family = MONOMIAL
#    initial_condition = 1.0
  [../]
  [./react_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./x2]
    type = PiecewiseLinear
    x = '0  1 2 3'
    y = '0 .5 1 1'
  [../]
  [./y2]
    type = PiecewiseLinear
    x = '0 1  2 3'
    y = '0 0 .5 1'
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0.0
  [../]
  [./fixx2]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    function = x2
  [../]
  [./fixx3]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 3
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]
  [./fixy2]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = y2
  [../]
  [./fixy3]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 3
    value = 0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]
  [./fixz2]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
  [./fixz3]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 3
    value = 0
  [../]
[]

[AuxKernels]
  [./axial_stress]
    type = MaterialRealAux
    block = '1 2'
    property = axial_stress
    variable = axial_stress
  [../]
  [./e_over_l]
    type = MaterialRealAux
    block = '1 2'
    property = e_over_l
    variable = e_over_l
  [../]
  [./area]
    type = ConstantAux
    block = '1 2'
    variable = area
    value = 1.0
    execute_on = 'initial timestep_begin'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'jacobi   101'
  line_search = 'none'

  nl_max_its = 15
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-10

  dt = 1
  num_steps = 3
  end_time = 3
[]

[Kernels]
  [./solid_x]
    type = StressDivergenceTensorsTruss
    block = '1 2'
    displacements = 'disp_x disp_y disp_z'
    component = 0
    variable = disp_x
    area = area
    save_in = react_x
  [../]
  [./solid_y]
    type = StressDivergenceTensorsTruss
    block = '1 2'
    displacements = 'disp_x disp_y disp_z'
    component = 1
    variable = disp_y
    area = area
    save_in = react_y
  [../]
  [./solid_z]
    type = StressDivergenceTensorsTruss
    block = '1 2'
    displacements = 'disp_x disp_y disp_z'
    component = 2
    variable = disp_z
    area = area
    save_in = react_z
  [../]
[]

[Materials]
  [./linelast]
    type = LinearElasticTruss
    block = '1 2'
    youngs_modulus = 1e6
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/nearest_node_locator/adapt.i

[Mesh]
  file = 2dcontact_collide.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./conv]
    type = Convection
    variable = u
    velocity = '1 0 0'
  [../]
[]

[AuxKernels]
  [./zero]
    type = ConstantAux
    variable = distance
  [../]
  [./distance]
    type = NearestNodeDistanceAux
    variable = distance
    boundary = 2
    paired_boundary = 3
  [../]
[]

[BCs]
  [./block1_left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
  [./block1_right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
  [./block2_left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]
  [./block2_right]
    type = DirichletBC
    variable = u
    boundary = 4
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  marker = uniform
  [./Markers]
    [./uniform]
      type = UniformMarker
      mark = refine
    [../]
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/2d_moving_penetration/pl_test1qtt.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test1q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1.e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test1qtt_out
  exodus = true
[]

test/tests/multiapps/sub_cycling/master_sub_output.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub.i
    sub_cycling = true
    output_sub_cycles = true
  [../]
[]

modules/phase_field/test/tests/misc/interface_grad.i

#
# Test a gradient continuity interfacekernel
#

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 20
    ny = 10
    ymax = 0.5
  []
  [./box1]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '0.51 1 0'
    input = gen
  [../]
  [./box2]
    type = SubdomainBoundingBoxGenerator
    block_id = 2
    bottom_left = '0.49 0 0'
    top_right = '1 1 0'
    input = box1
  [../]
  [./iface_u]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = 1
    paired_block = 2
    new_boundary = 10
    input = box2
  [../]
  [./iface_v]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = 2
    paired_block = 1
    new_boundary = 11
    input = iface_u
  [../]
[]

[Variables]
  [./u]
    block = 1
    [./InitialCondition]
      type = FunctionIC
      function = 'r:=sqrt((x-0.4)^2+(y-0.5)^2);if(r<0.05,5,1)'
    [../]
  [../]
  [./v]
    block = 2
    initial_condition = 0.8
  [../]
[]

[Kernels]
  [./u_diff]
    type = Diffusion
    variable = u
    block = 1
  [../]
  [./u_dt]
    type = TimeDerivative
    variable = u
    block = 1
  [../]
  [./v_diff]
    type = Diffusion
    variable = v
    block = 2
  [../]
  [./v_dt]
    type = TimeDerivative
    variable = v
    block = 2
  [../]
[]

[InterfaceKernels]
  [./iface]
    type = InterfaceDiffusionFluxMatch
    variable = u
    boundary = 10
    neighbor_var = v
  [../]
[]

[BCs]
  [./u_boundary_term]
    type = DiffusionFluxBC
    variable = u
    boundary = 10
  [../]
  [./v_boundary_term]
    type = DiffusionFluxBC
    variable = v
    boundary = 11
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.002
  num_steps = 10
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
[]

modules/tensor_mechanics/test/tests/stress_recovery/patch/patch_finite_stress.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  elem_type = QUAD4
[]

[Variables]
  [disp_x]
    order = FIRST
    family = LAGRANGE
  []
  [disp_y]
    order = FIRST
    family = LAGRANGE
  []
[]

[AuxVariables]
  [stress_xx]
    order = FIRST
    family = MONOMIAL
  []
  [stress_yy]
    order = FIRST
    family = MONOMIAL
  []
  [stress_xx_recovered]
    order = FIRST
    family = LAGRANGE
  []
  [stress_yy_recovered]
    order = FIRST
    family = LAGRANGE
  []
[]

[AuxKernels]
  [stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = 'timestep_end'
  []
  [stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = 'timestep_end'
  []
  [stress_xx_recovered]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx_recovered
    index_i = 0
    index_j = 0
    execute_on = 'timestep_end'
  []
  [stress_yy_recovered]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy_recovered
    index_i = 1
    index_j = 1
    execute_on = 'timestep_end'
  []
[]

[Kernels]
  [solid_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  []
  [solid_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  []
[]

[Materials]
  [strain]
    type = ComputeFiniteStrain
  []
  [Cijkl]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 2.1e+5
  []
  [stress]
    type = ComputeFiniteStrainElasticStress
  []
[]

[BCs]
  [top_xdisp]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'top'
    function = 0
  []
  [top_ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'top'
    function = t
  []
  [bottom_xdisp]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'bottom'
    function = 0
  []
  [bottom_ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'bottom'
    function = 0
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
    ksp_norm = default
  []
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-ksp_type -pc_type'
  petsc_options_value = 'preonly   lu'
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 30
  dt = 0.01
  dtmin = 1e-11
  start_time = 0
  end_time = 0.05
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
[]

test/tests/geomsearch/2d_moving_penetration/pl_test4qnns.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_method = nodal_normal_based
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1.e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test4qnns_out
  exodus = true
[]

[NodalNormals]
  boundary = 11
  corner_boundary = 20
[]

modules/combined/test/tests/solid_mechanics/spherical_shell/3D_test.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces. Three versions of the test are
# provided, assuming 1D spherical geometry (1D-SPH), 2D axisymmetic geometry
# (2D-RZ), and 3D geometry (3D). The tests demonstrate that all three geometric
# approaches produce the same correct solution.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000, respectively. The resulting compressive tangential
# stress is largest at the inner wall and, from the above equation, has a value
# of -271429.
#
# RESULTS are below. Since stresses are average element values, values for the
# edge element and one-element-in are used to extrapolate the stress to the
# inner surface. The vesrion of the tests that are checked use the coarsest meshes.
#
#  Mesh    Radial elem   S(edge elem)  S(one elem in)  S(extrap to surf)
# 1D-SPH       12          -264842      -254419        -270053
# 2D-RZ        12          -265007      -254668        -270177
#  3D          12 (4x4)    -258922      -251099        -262834
#  3D          12 (6x6)    -262194      -252969        -266807
#
# 1D-SPH       48          -269679      -266390        -271323
# 2D-RZ        48          -269723      -266470        -271350
#  3D          48          -268617      -265717        -270067
#
# 1D-SPH      100          -270580      -268932        -271404
# 2D-RZ       100          -270587      -268946        -271408
#
# The numerical solution converges to the analytical solution as the mesh is
# refined.

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = 3D_mesh.e
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    additional_generate_output = 'stress_zz'
  []
[]

[BCs]
# pin particle along symmetry planes
  [./no_disp_x]
    type = DirichletBC
    variable = disp_x
    boundary = xzero
    value = 0.0
  [../]

  [./no_disp_y]
    type = DirichletBC
    variable = disp_y
    boundary = yzero
    value = 0.0
  [../]

  [./no_disp_z]
    type = DirichletBC
    variable = disp_z
    boundary = zzero
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = outer
    component = 0
    factor = 200000
  [../]

 [./exterior_pressure_y]
    type = Pressure
    variable = disp_y
    boundary = outer
    component = 1
    factor = 200000
  [../]

[./exterior_pressure_z]
    type = Pressure
    variable = disp_z
    boundary = outer
    component = 2
    factor = 200000
  [../]

  [./interior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = inner
    component = 0
    factor = 100000
  [../]

  [./interior_pressure_y]
    type = Pressure
    variable = disp_y
    boundary = inner
    component = 1
    factor = 100000
  [../]

[./interior_pressure_z]
    type = Pressure
    variable = disp_z
    boundary = inner
    component = 2
    factor = 100000
  [../]
[]

[Materials]
  [./elastic]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1.0e10
    poissons_ratio = 0.345
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
[]

[Debug]
    show_var_residual_norms = true
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

   start_time = 0.0
   end_time = 1
   num_steps = 1000

  dtmax = 5e6
  dtmin = 1
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    optimal_iterations = 6
    iteration_window = 0
    linear_iteration_ratio = 100
  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

#  [./Quadrature]
#    order = THIRD
#  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_3/brick3_mu_0_2_pen.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick3_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
  [./tang_force_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_x
  [../]
  [./disp_x33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_x
  [../]
  [./disp_y28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_y
  [../]
  [./disp_y33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  file_base = brick3_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = brick3_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x28 disp_y28 disp_x33 disp_y33 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+6
  [../]
[]

test/tests/postprocessors/memory_usage/print_memory_usage.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Adaptivity]
  [./Markers]
    [./uni]
      type = UniformMarker
      mark = REFINE
    [../]
  [../]

  # this marker will tag every element for refinement, growing the problem
  # exponentially with each timestep
  marker = uni

  # avoid a refine after the final step
  stop_time = 4.5
[]

[Postprocessors]
  [./physical]
    type = MemoryUsage
    mem_type = physical_memory
    value_type = total
    # by default MemoryUsage reports the peak value for the current timestep
    # out of all samples that have been taken (at linear and non-linear iterations)
    execute_on = 'INITIAL TIMESTEP_END NONLINEAR LINEAR'
  [../]
  [./virtual]
    type = MemoryUsage
    mem_type = virtual_memory
    value_type = total
    execute_on = 'INITIAL TIMESTEP_END'
  [../]
  [./page_faults]
    type = MemoryUsage
    mem_type = page_faults
    value_type = total
    execute_on = 'INITIAL TIMESTEP_END'
  [../]
  [./DOFs]
    type = NumDOFs
    execute_on = 'INITIAL TIMESTEP_END'
  [../]
  [./walltime]
    type = PerfGraphData
    section_name = "Root"
    data_type = total
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm      lu'

  nl_abs_tol = 1e-10

  num_steps = 5
  dt = 1
[]

[Outputs]
  csv = true
  execute_on = 'INITIAL TIMESTEP_END FINAL'
  perf_graph = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/tosub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  elem_type = QUAD8
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[AuxVariables]
  [./nodal_source_from_master_nodal]
    family = LAGRANGE
    order = FIRST
  [../]
  [./nodal_source_from_master_elemental]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./elemental_source_from_master_nodal]
    family = LAGRANGE
    order = FIRST
  [../]
  [./elemental_source_from_master_elemental]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/time_steppers/timesequence_stepper/timesequence_restart_failure.i

[Mesh]
  file = timesequence_restart_failure1_cp/0002_mesh.cpr
[]

[Problem]
  restart_file_base = timesequence_restart_failure1_cp/0002
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  end_time = 4.0
  [./TimeStepper]
    type = TimeSequenceStepper
    time_sequence  = '0   0.85 1.2 1.3 2 4'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/mass06.i

# 1phase with MD_Gaussian (var = log(mass-density) with Gaussian capillary) formulation
# constant-bulk density, constant porosity, 1component
# fully saturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./md]
  [../]
[]

[ICs]
  [./md]
    type = RandomIC
    min = 0
    max = 1
    variable = md
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = md
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'md'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 0.8
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseMD_Gaussian
    mass_density = md
    al = 1.1
    density_P0 = 0.8
    bulk_modulus = 1.5
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/tensor_mechanics/test/tests/j2_plasticity/tensor_mechanics_j2plasticity.i

[Mesh]
  displacements = 'x_disp y_disp z_disp'
  [generated_mesh]
    type = GeneratedMeshGenerator
    elem_type = HEX8
    dim = 3
    nx = 1
    ny = 1
    nz = 1
    xmin = 0.0
    xmax = 1.0
    ymin = 0.0
    ymax = 1.0
    zmin = 0.0
    zmax = 1.0
  []
  [cnode]
    type = ExtraNodesetGenerator
    coord = '0.0 0.0 0.0'
    new_boundary = 6
    input = generated_mesh
  []
  [snode]
    type = ExtraNodesetGenerator
    coord = '1.0 0.0 0.0'
    new_boundary = 7
    input = cnode
  []
[]

[Variables]
  [./x_disp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./y_disp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./z_disp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
    use_displaced_mesh = true
  [../]
[]

[Materials]
  [./fplastic]
    type = FiniteStrainPlasticMaterial
    block=0
    yield_stress='0. 445. 0.05 610. 0.1 680. 0.38 810. 0.95 920. 2. 950.'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '2.827e5 1.21e5 1.21e5 2.827e5 1.21e5 2.827e5 0.808e5 0.808e5 0.808e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
[]

[Functions]
  [./topfunc]
    type = ParsedFunction
    value = 't'
  [../]
[]

[BCs]
  [./bottom3]
    type = DirichletBC
    variable = z_disp
    boundary = 0
    value = 0.0
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = 5
    function = topfunc
  [../]
  [./corner1]
    type = DirichletBC
    variable = x_disp
    boundary = 6
    value = 0.0
  [../]
  [./corner2]
    type = DirichletBC
    variable = y_disp
    boundary = 6
    value = 0.0
  [../]
  [./corner3]
    type = DirichletBC
    variable = z_disp
    boundary = 6
    value = 0.0
  [../]
  [./side1]
    type = DirichletBC
    variable = y_disp
    boundary = 7
    value = 0.0
  [../]
  [./side2]
    type = DirichletBC
    variable = z_disp
    boundary = 7
    value = 0.0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./peeq]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pe11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pe22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pe33]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./pe11]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = pe11
    index_i = 0
    index_j = 0
  [../]
    [./pe22]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = pe22
    index_i = 1
    index_j = 1
  [../]
  [./pe33]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = pe33
    index_i = 2
    index_j = 2
  [../]
  [./eqv_plastic_strain]
    type = MaterialRealAux
    property = eqv_plastic_strain
    variable = peeq
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full=true
  [../]
[]

[Executioner]
  type = Transient

  dt=0.1
  dtmax=1
  dtmin=0.1
  end_time=1.0

  nl_abs_tol = 1e-10
[]


[Outputs]
  file_base = out
  exodus = true
[]

modules/tensor_mechanics/test/tests/multi/three_surface21.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 2.0E-6m in y direction and 2.0E-6 in z direction.
# trial stress_yy = 2.0 and stress_zz = 2.0
#
# Then all yield functions will activate
# However, there is linear dependence.  SimpleTester1 or SimpleTester0 will be rutned off (they are equi-distant).
# The algorithm will return to one corner point, but there will be negative plastic multipliers
# so the other SimpleTester0 or SimpleTester1 will turn off, and the algorithm will return to
# stress_yy=0.75 and stress_zz=0.75
# internal2=1.25


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2.0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '2.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface21
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/porous_flow/test/tests/chemistry/except18.i

# Exception test
# Incorrect number of kinetic in dictator
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_equilibrium = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    reactions = '2 3'
    specific_reactive_surface_area = 1.0
    kinetic_rate_constant = 1.0e-8
    activation_energy = 1.5e4
    molar_volume = 1
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

test/tests/geomsearch/3d_moving_penetration/pl_test4.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test4_out
  exodus = true
[]

test/tests/transfers/multiapp_postprocessor_transfer/sub1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/ics/from_exodus_solution/nodal_part1.i

# We run a simple problem (5 time steps and save off the solution)
# In part2, we load the solution and solve a steady problem. The test check, that the initial state in part 2 is the same as the last state from part1

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 20
  ny = 20
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = -4+(x*x+y*y)
  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'ie diff ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.2
  start_time = 0
  num_steps = 5
[]

[Outputs]
  file_base = out_nodal_part1
  exodus = true
  xda = true
[]

modules/richards/test/tests/dirac/bh_fu_08.i

#fullyupwind
[Mesh]
  type = FileMesh
  file = bh07_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  sat_UO = Saturation
  seff_UO = Seff1VG
  SUPG_UO = SUPGstandard
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1000 10000'
    x = '100 1000'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[BCs]
  [./fix_outer]
    type = DirichletBC
    boundary = perimeter
    variable = pressure
    value = 1E7
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh08.bh
    borehole_length = 1
    borehole_direction = '0 0 1'
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    re_constant = 0.1594
    character = 2
    fully_upwind = true
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
    execute_on = 'initial timestep_end'
  [../]

  [./fluid_mass]
    type = RichardsMass
    variable = pressure
    execute_on = 'initial timestep_end'
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E7
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-11 0 0  0 1E-11 0  0 0 1E-11'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1000
  solve_type = NEWTON

  [./TimeStepper]
    # get only marginally better results for smaller time steps
    type = FunctionDT
    function = dts
  [../]

[]

[Outputs]
  file_base = bh_fu_08
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

modules/combined/test/tests/power_law_creep/power_law_creep_restart1_sm.i

# 1x1x1 unit cube with uniform pressure on top face

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]
[]


[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./creep_strain_xx]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_xx
    index = 0
  [../]
  [./creep_strain_yy]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_yy
    index = 1
  [../]
  [./creep_strain_zz]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_zz
    index = 2
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]
[]


[BCs]
  [./u_top_pull]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    factor = -10.0e6
    function = top_pull
  [../]

  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'bottom top'
    value = 1000.0
  [../]
[]

[Materials]
  [./creep]
    type = PowerLawCreep
    block = 0
    youngs_modulus = 2.e11
    poissons_ratio = .3
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    formulation = Nonlinear3D
  [../]

  [./thermal]
    type = HeatConductionMaterial
    block = 0
    specific_heat = 1.0
    thermal_conductivity = 100.0
  [../]
  [./density]
    type = Density
    block = 0
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.0
  num_steps = 6
  dt = 0.1
[]

[Outputs]
  file_base = power_law_creep_restart1_out
  exodus = true
  csv = true
  [./out]
    type = Checkpoint
    num_files = 1
  [../]
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_3comp_fully_saturated.i

# Pressure pulse in 1D with 1 phase, 3 component - transient
# using the PorousFlowFullySaturatedDarcyFlow Kernel
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 2E6
  [../]
  [./f0]
    initial_condition = 0
  [../]
  [./f1]
    initial_condition = 0.2
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./flux0]
    type = PorousFlowFullySaturatedDarcyFlow
    variable = pp
    gravity = '0 0 0'
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = f0
  [../]
  [./flux1]
    type = PorousFlowFullySaturatedDarcyFlow
    variable = f0
    gravity = '0 0 0'
    fluid_component = 1
  [../]
  [./mass2]
    type = PorousFlowMassTimeDerivative
    fluid_component = 2
    variable = f1
  [../]
  [./flux2]
    type = PorousFlowFullySaturatedDarcyFlow
    variable = f1
    gravity = '0 0 0'
    fluid_component = 2
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp f0 f1'
    number_fluid_phases = 1
    number_fluid_components = 3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac_nodes]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'f0 f1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    preset = false
    value = 3E6
    variable = pp
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -pc_factor_shift_type'
    petsc_options_value = 'bcgs lu 1E-15 1E-10 10000 NONZERO'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[Postprocessors]
  [./p005]
    type = PointValue
    variable = pp
    point = '5 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p015]
    type = PointValue
    variable = pp
    point = '15 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p025]
    type = PointValue
    variable = pp
    point = '25 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p035]
    type = PointValue
    variable = pp
    point = '35 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p045]
    type = PointValue
    variable = pp
    point = '45 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p055]
    type = PointValue
    variable = pp
    point = '55 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p065]
    type = PointValue
    variable = pp
    point = '65 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p075]
    type = PointValue
    variable = pp
    point = '75 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p085]
    type = PointValue
    variable = pp
    point = '85 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p095]
    type = PointValue
    variable = pp
    point = '95 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  file_base = pressure_pulse_1d_3comp_fully_saturated
  print_linear_residuals = false
  csv = true
[]

modules/stochastic_tools/test/tests/transfers/errors/sub_wrong_control.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = RealFunctionControl
    function = '1'
    parameter = 'BCs/left/value'
  []
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/combined_plasticity_temperature/ad_plasticity_temperature_dep_yield.i

#
# This is a test of the piece-wise linear strain hardening model using the
# small strain formulation.  This test exercises the temperature-dependent
# yield stress.
#
# Test procedure:
# 1. The element is pulled to and then beyond the yield stress for a given
# temperature.
# 2. The displacement is then constant while the temperature increases and
# the yield stress decreases.  This results in a lower stress with more
# plastic strain.
# 3. The temperature decreases beyond its original value giving a higher
# yield stress.  The displacement increases, causing increases stress to
# the new yield stress.
# 4. The temperature and yield stress are constant with increasing
# displacement giving a constant stress and more plastic strain.
#
# Plotting total_strain_yy on the x axis and stress_yy on the y axis shows
# the stress history in a clear way.
#
#  s |
#  t |            *****
#  r |           *
#  e |   *****  *
#  s |  *    * *
#  s | *     *
#    |*
#    +------------------
#           total strain
#

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy plastic_strain_xx plastic_strain_yy plastic_strain_zz'
    use_automatic_differentiation = true
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1     2    4    5    6'
    y = '0 0.025 0.05 0.05 0.06 0.085'
  [../]
  [./yield]
    type = PiecewiseLinear
    x = '400 500 600'
    y = '6e3 5e3 4e3'
  [../]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2   3   4'
    y = '500 500 500 600 400'
  [../]
[]

[Kernels]
  [./heat]
    type = ADHeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = top_pull
  [../]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp]
    type = FunctionDirichletBC
    variable = temp
    function = temp
    boundary = left
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    youngs_modulus = 2.0e5
    poissons_ratio = 0.3
  [../]
  [./creep_plas]
    type = ADComputeMultipleInelasticStress
    block = 0
    inelastic_models = 'plasticity'
    max_iterations = 50
    absolute_tolerance = 1e-05
  [../]
  [./plasticity]
    type = ADIsotropicPlasticityStressUpdate
    block = 0
    hardening_constant = 0
    yield_stress_function = yield
    temperature = temp
  [../]
  [./heat_conduction]
    type = HeatConductionMaterial
    block = 0
    specific_heat = 1
    thermal_conductivity = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 6
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

test/tests/controls/time_periods/dgkernels/dgkernels.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Adaptivity]
  marker = uniform_marker
  [./Markers]
    [./uniform_marker]
      type = UniformMarker
      mark = REFINE
    [../]
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = MONOMIAL
    initial_condition = 1
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    value = 2*pow(e,-x-(y*y))*(1-2*y*y)
  [../]

  [./exact_fn]
    type = ParsedGradFunction
    value = pow(e,-x-(y*y))
    grad_x = -pow(e,-x-(y*y))
    grad_y = -2*y*pow(e,-x-(y*y))
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./abs]          # u * v
    type = Reaction
    variable = u
  [../]

  [./forcing]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[DGKernels]
  [./dg_diff]
    type = DGDiffusion
    variable = u
    epsilon = -1
    sigma = 6
  [../]
  [./dg_diff2]
    type = DGDiffusion
    variable = u
    epsilon = -1
    sigma = 4
  [../]
[]

[BCs]
  [./all]
    type = DGFunctionDiffusionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
    epsilon = -1
    sigma = 6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
#  petsc_options_iname = '-pc_type -pc_hypre_type'
#  petsc_options_value = 'hypre    boomeramg'
  num_steps = 4
  dt = 1
  nl_rel_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

[Controls]
  [./dg_problem]
    type = TimePeriod
    enable_objects = 'DGKernels/dg_diff2'
    disable_objects = 'DGKernel::dg_diff'
    start_time = '2'
    execute_on = 'initial timestep_begin'
  [../]
[]

modules/navier_stokes/test/tests/ins/mms/supg/supg_pspg_adv_dominated_mms.i

mu=1.5e-4
rho=2.5

[GlobalParams]
  gravity = '0 0 0'
  supg = true
  pspg = true
  convective_term = true
  integrate_p_by_parts = false
  transient_term = true
  laplace = true
  u = vel_x
  v = vel_y
  p = p
  alpha = 1e0
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 1.0
    ymin = 0
    ymax = 1.0
    elem_type = QUAD9
    nx = 4
    ny = 4
  []
  [./corner_node]
    type = ExtraNodesetGenerator
    new_boundary = 'pinned_node'
    nodes = '0'
    input = gen
  [../]
[]

[Variables]
  [./vel_x]
  [../]

  [./vel_y]
  [../]

  [./p]
    order = FIRST
  [../]
[]

[Kernels]
  # mass
  [./mass]
    type = INSMass
    variable = p
    x_vel_forcing_func = vel_x_source_func
    y_vel_forcing_func = vel_y_source_func
  [../]

  [./x_time]
    type = INSMomentumTimeDerivative
    variable = vel_x
  [../]
  [./y_time]
    type = INSMomentumTimeDerivative
    variable = vel_y
  [../]

  # x-momentum, space
  [./x_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_x
    component = 0
    forcing_func = vel_x_source_func
  [../]

  # y-momentum, space
  [./y_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_y
    component = 1
    forcing_func = vel_y_source_func
  [../]

  [./p_source]
    type = BodyForce
    function = p_source_func
    variable = p
  [../]
[]

[BCs]
  [./vel_x]
    type = FunctionDirichletBC
    boundary = 'left right top bottom'
    function = vel_x_func
    variable = vel_x
  [../]
  [./vel_y]
    type = FunctionDirichletBC
    boundary = 'left right top bottom'
    function = vel_y_func
    variable = vel_y
  [../]
  [./p]
    type = FunctionDirichletBC
    boundary = 'left right top bottom'
    function = p_func
    variable = p
  [../]
[]

[Functions]
  [./vel_x_source_func]
    type = ParsedFunction
    value = '-${mu}*(-0.028*pi^2*x^2*sin(0.2*pi*x*y) - 0.028*pi^2*y^2*sin(0.2*pi*x*y) - 0.1*pi^2*sin(0.5*pi*x) - 0.4*pi^2*sin(pi*y)) + ${rho}*(0.14*pi*x*cos(0.2*pi*x*y) + 0.4*pi*cos(pi*y))*(0.6*sin(0.8*pi*x) + 0.3*sin(0.3*pi*y) + 0.2*sin(0.3*pi*x*y) + 0.3) + ${rho}*(0.14*pi*y*cos(0.2*pi*x*y) + 0.2*pi*cos(0.5*pi*x))*(0.4*sin(0.5*pi*x) + 0.4*sin(pi*y) + 0.7*sin(0.2*pi*x*y) + 0.5) + 0.1*pi*y*cos(0.2*pi*x*y) + 0.25*pi*cos(0.5*pi*x)'
  [../]
  [./vel_y_source_func]
    type = ParsedFunction
    value = '-${mu}*(-0.018*pi^2*x^2*sin(0.3*pi*x*y) - 0.018*pi^2*y^2*sin(0.3*pi*x*y) - 0.384*pi^2*sin(0.8*pi*x) - 0.027*pi^2*sin(0.3*pi*y)) + ${rho}*(0.06*pi*x*cos(0.3*pi*x*y) + 0.09*pi*cos(0.3*pi*y))*(0.6*sin(0.8*pi*x) + 0.3*sin(0.3*pi*y) + 0.2*sin(0.3*pi*x*y) + 0.3) + ${rho}*(0.06*pi*y*cos(0.3*pi*x*y) + 0.48*pi*cos(0.8*pi*x))*(0.4*sin(0.5*pi*x) + 0.4*sin(pi*y) + 0.7*sin(0.2*pi*x*y) + 0.5) + 0.1*pi*x*cos(0.2*pi*x*y) + 0.3*pi*cos(0.3*pi*y)'
  [../]
  [./p_source_func]
    type = ParsedFunction
    value = '-0.06*pi*x*cos(0.3*pi*x*y) - 0.14*pi*y*cos(0.2*pi*x*y) - 0.2*pi*cos(0.5*pi*x) - 0.09*pi*cos(0.3*pi*y)'
  [../]
  [./vel_x_func]
    type = ParsedFunction
    value = '0.4*sin(0.5*pi*x) + 0.4*sin(pi*y) + 0.7*sin(0.2*pi*x*y) + 0.5'
  [../]
  [./vel_y_func]
    type = ParsedFunction
    value = '0.6*sin(0.8*pi*x) + 0.3*sin(0.3*pi*y) + 0.2*sin(0.3*pi*x*y) + 0.3'
  [../]
  [./p_func]
    type = ParsedFunction
    value = '0.5*sin(0.5*pi*x) + 1.0*sin(0.3*pi*y) + 0.5*sin(0.2*pi*x*y) + 0.5'
  [../]
  [./vxx_func]
    type = ParsedFunction
    value = '0.14*pi*y*cos(0.2*pi*x*y) + 0.2*pi*cos(0.5*pi*x)'
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'rho mu'
    prop_values = '${rho}  ${mu}'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    solve_type = 'NEWTON'
  [../]
[]

[Executioner]
  petsc_options = '-snes_converged_reason -ksp_converged_reason -snes_view'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu NONZERO superlu_dist'
  line_search = 'none'
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-12
  nl_max_its = 10
  l_tol = 1e-6
  l_max_its = 10
  # To run to steady-state, set num-steps to some large number (1000000 for example)
  type = Transient
  num_steps = 10
  steady_state_detection = true
  steady_state_tolerance = 1e-10
  [./TimeStepper]
    dt = .1
    type = IterationAdaptiveDT
    cutback_factor = 0.4
    growth_factor = 1.2
    optimal_iterations = 20
  [../]
[]

[Outputs]
  execute_on = 'final'
  [./exodus]
    type = Exodus
  [../]
  [./csv]
    type = CSV
  [../]
[]

[Postprocessors]
  [./L2vel_x]
    type = ElementL2Error
    variable = vel_x
    function = vel_x_func
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
  [./L2vel_y]
    variable = vel_y
    function = vel_y_func
    type = ElementL2Error
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
  [./L2p]
    variable = p
    function = p_func
    type = ElementL2Error
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
  [./L2vxx]
    variable = vxx
    function = vxx_func
    type = ElementL2Error
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
[]

[AuxVariables]
  [./vxx]
    family = MONOMIAL
    order = FIRST
  [../]
[]

[AuxKernels]
  [./vxx]
    type = VariableGradientComponent
    component = x
    variable = vxx
    gradient_variable = vel_x
  [../]
[]

modules/tensor_mechanics/test/tests/tensile/planar8.i

# A single unit element is stretched by (0.5, 0.4, 0.3)E-6m
# with Lame lambda = 0.6E6 and Lame mu (shear) = 1E6
# stress_xx = 1.72 Pa
# stress_yy = 1.52 Pa
# stress_zz = 1.32 Pa
# tensile_strength is set to 1.3Pa hardening to 2Pa over intnl=1E-6
#
# The return should be to the edge (the algorithm will first try the tip) with
# according to mathematica
# internal = 1.67234152669E-7
# stress_xx = stress_yy = 1.3522482794
# stress_zz = 1.2195929084

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.5E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.4E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.3E-6*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./hard]
    type = TensorMechanicsHardeningCubic
    value_0 = 1.3
    value_residual = 2
    internal_limit = 1E-6
  [../]
  [./tens]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = hard
    shift = 1E-6
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.6E6 1E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = tens
    debug_fspb = none
    debug_jac_at_stress = '1 2 3 2 -4 -5 3 -5 10'
    debug_jac_at_pm = '0.1 0.2 0.3'
    debug_jac_at_intnl = 1E-6
    debug_stress_change = 1E-6
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar8
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/initial_stress/gravity_cosserat.i

# Apply an initial stress that should be
# exactly that caused by gravity, and then
# do a transient step to check that nothing
# happens
# TODO: currently this has no div(moment_stress)
# contriution to the Kernels.  This is because
# there is no way in MOOSE of calculating
# moment stresses and applying initial stresses.
# This will become possible after issue #7243 is
# resolved.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -10
  zmax = 0
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
  [./z_moment]
    type = MomentBalancing
    variable = wc_z
    component = 2
  [../]
  [./weight]
    type = BodyForce
    variable = disp_z
    value = -0.5 # this is density*gravity
  [../]
[]


[BCs]
  # back = zmin
  # front = zmax
  # bottom = ymin
  # top = ymax
  # left = xmin
  # right = xmax
  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left right'
    value = 0
  [../]
  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom top'
    value = 0
  [../]
  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 'back'
    value = 0
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]


[Functions]
  [./weight]
    type = ParsedFunction
    value = '0.5*z' # initial stress that should result from the weight force
  [../]
  [./kxx]
    type = ParsedFunction
    value = '0.4*z' # some arbitrary xx and yy stress that should not affect the result
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeCosseratElasticityTensor
    B_ijkl = '1.1 0.6 0.6' # In Forest notation this is alpha=1.1 (this is unimportant), beta=gamma=0.6.
    fill_method_bending = 'general_isotropic'
    fill_method = symmetric_isotropic
    E_ijkl = '0.4 0.4' # young = 1, poisson = 0.25
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = 'kxx 0 0  0 kxx 0  0 0 weight'
    eigenstrain_name = ini_stress
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]


[Executioner]
  end_time = 1.0
  dt = 1.0
  solve_type = NEWTON
  type = Transient

  nl_abs_tol = 1E-8
  nl_rel_tol = 1E-12
  l_tol = 1E-3
  l_max_its = 200
  nl_max_its = 400

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]



[Outputs]
  file_base = gravity_cosserat
  exodus = true
[]

test/tests/tag/tag_nodal_kernels.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./nodal_ode]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]
  [./time]
    type = TimeDerivative
    variable = u
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]
[]

[NodalKernels]
  [./td]
    type = TimeDerivativeNodalKernel
    variable = nodal_ode
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]
  [./constant_rate]
    type = ConstantRate
    variable = nodal_ode
    rate = 1.0
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1 vec_tag2'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 10
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]
[]

[Problem]
  type = TagTestProblem
  test_tag_vectors =  'time nontime residual vec_tag1 vec_tag2'
  test_tag_matrices = 'mat_tag1 mat_tag2'

  extra_tag_matrices = 'mat_tag1 mat_tag2'
  extra_tag_vectors  = 'vec_tag1 vec_tag2'
[]

[AuxVariables]
  [./tag_variable1]
    order = FIRST
    family = LAGRANGE
  [../]

  [./tag_variable2]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./TagVectorAux1]
    type = TagVectorAux
    variable = tag_variable1
    v = nodal_ode
    vector_tag = vec_tag2
    execute_on = timestep_end
  [../]

  [./TagVectorAux2]
    type = TagMatrixAux
    variable = tag_variable2
    v = u
    matrix_tag = mat_tag2
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  nl_rel_tol = 1e-08
  dt = 0.01
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/volumetric_deform_grad/elastic_stress.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '0.01*t'
  [../]
[]

[Materials]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./elastic_stress]
    type = ComputeDeformGradBasedStress
    deform_grad_name = deformation_gradient
    elasticity_tensor_name = elasticity_tensor
    stress_name = stress
    jacobian_name = Jacobian_mult
    block = 0
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '2.8e5 1.2e5 1.2e5 2.8e5 1.2e5 2.8e5 0.8e5 0.8e5 0.8e5'
    fill_method = symmetric9
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.02
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 101'
  dtmax = 10.0
  nl_rel_tol = 1e-10
  dtmin = 0.02
  num_steps = 10
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/j2_plasticity/hard1.i

# UserObject J2 test, with hardening, but with rate=0
# apply uniform compression in x direction to give
# trial stress_xx = -5, so sqrt(3*J2) = 5
# with zero Poisson's ratio, this should return to
# stress_xx = -3, stress_yy = -1 = stress_zz,
# for strength = 2
# (note that stress_xx - stress_yy = stress_xx - stress_zz = -2, so sqrt(3*j2) = 2,
#  and that the mean stress remains = -5/3)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-2.5E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
  [./j2]
    type = TensorMechanicsPlasticJ2
    yield_strength = str
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = j2
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = hard1
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/porous_flow/test/tests/flux_limited_TVD_advection/jacobian_02.i

# Checking the Jacobian of Flux-Limited TVD Advection, using flux_limiter_type = superbee
# Here we use snes_check_jacobian instead of snes_type=test.  The former just checks the Jacobian for the
# random initial conditions, while the latter checks for u=1 and u=-1
#
# The Jacobian is correct for u=1 and u=-1, but the finite-difference scheme used by snes_type=test gives the
# wrong answer.
# For u=1, the Kuzmin-Turek scheme adds as much antidiffusion as possible, resulting in a central-difference
# version of advection (flux_limiter = 1).  This is correct, and the Jacobian is calculated correctly.
# However, when computing the Jacobian using finite differences, u is increased or decreased at a node.
# This results in that node being at a maximum or minimum, which means no antidiffusion should be added
# (flux_limiter = 0).  This corresponds to a full-upwind scheme.  So the finite-difference computes the
# Jacobian in the full-upwind scenario, which is incorrect (the original residual = 0, after finite-differencing
# the residual comes from the full-upwind scenario).
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  xmin = 0
  xmax = 1
  ny = 2
  ymin = -1
  ymax = 2
  bias_y = 1.5
  nz = 2
  zmin = 1
  zmax = 2
  bias_z = 0.8
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u]
    type = FunctionIC
    variable = u
    function = 'x + 0.5 * y - 0.4 * z - 0.1 * sin(x) - 0.1 * cos(y) + 0.2 * exp(-z)'
  [../]
[]

[Kernels]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = u
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = superbee
    u = u
    velocity = '1 -2 1.5'
  [../]
[]


[Preconditioning]
  active = smp
  [./smp]
    type = SMP
    full = true
    petsc_options = '-snes_check_jacobian'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Linear # this is to force convergence even though the nonlinear residual is high: we just care about the Jacobian in this test
  end_time = 1
  num_steps = 1
  dt = 1
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform4.i

# Plastic deformation, compression failure
# With Young = 10, poisson=0.25 (Lame lambda=4, mu=4)
# applying the following
# deformation to the zmax surface of a unit cube:
# disp_x = 4*t
# disp_y = 3*t
# disp_z = -t
# should yield trial stress:
# stress_zz = 12*t
# stress_zx = 16*t
# stress_zy = -12*t
# Use compressive strength = 6, we should return to stress_zz = -6,
# and stress_xx = stress_yy = -2*t up to t=1 when the system is completely
# plastic, so these stress components will not change
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 4*t
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 3*t
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = -t
  [../]
[]

[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 80
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 6
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '4 4'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 2
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform4
  csv = true
[]

test/tests/auxkernels/aux_scalar_deps/aux_scalar_deps.i

#
# Testing a solution that is second order in space and first order in time
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[AuxVariables]
  [./a]
    family = SCALAR
    order = FIRST
  [../]
  [./b]
    family = SCALAR
    order = FIRST
  [../]
  [./c]
    family = SCALAR
    order = FIRST
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./a_ic]
    type = ScalarConstantIC
    variable = a
    value = 0
  [../]
  [./b_ic]
    type = ScalarConstantIC
    variable = b
    value = 2
  [../]
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t
  [../]

  [./a_fn]
    type = ParsedFunction
    value = t
  [../]
  [./b_fn]
    type = ParsedFunction
    value = (4-t)/2
  [../]
[]

# NOTE: The execute_on = 'timestep_end' is crucial for this test. Without it
# the aux values would be updated during the residual formation and we would
# end up with the right value at the end of the time step. With this flag on,
# the dependencies has to be correct for this test to work. Otherwise the
# values of 'c' will be lagged.

[AuxScalarKernels]
  [./c_saux]
    type = QuotientScalarAux
    variable = c
    numerator = a
    denominator = b
    execute_on = 'timestep_end'
  [../]
  [./a_saux]
    type = FunctionScalarAux
    variable = a
    function = a_fn
    execute_on = 'timestep_end'
  [../]
  [./b_saux]
    type = FunctionScalarAux
    variable = b
    function = b_fn
    execute_on = 'timestep_end'
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'

  solve_type = 'PJFNK'
  start_time = 0.0
  num_steps = 2
  dt = 1
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/infiltration_and_drainage/rd01.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 120
  ny = 1
  xmin = 0
  xmax = 6
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1 10 500 5000 5000'
    x = '0 10 100 1000 10000 100000'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = pressure
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.336
    alpha = 1.43e-4
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e7
      viscosity = 1.01e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pressure
    capillary_pressure = pc
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityVG
    m = 0.336
    seff_turnover = 0.99
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.33
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0.295E-12 0 0  0 0.295E-12 0  0 0 0.295E-12'
  [../]
[]

[Variables]
  [./pressure]
    initial_condition = -72620.4
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pressure
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pressure
    gravity = '-10 0 0'
  [../]
[]

[AuxVariables]
  [./SWater]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./SWater]
    type = MaterialStdVectorAux
    property = PorousFlow_saturation_qp
    index = 0
    variable = SWater
  [../]
[]

[BCs]
  [./base]
    type = PorousFlowSink
    boundary = right
    flux_function = -2.315E-3
    variable = pressure
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10      1E-10      10'
  [../]
[]

[VectorPostprocessors]
  [./swater]
    type = LineValueSampler
    variable = SWater
    start_point = '0 0 0'
    end_point = '6 0 0'
    sort_by = x
    num_points = 121
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 359424

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = rd01
  [./exodus]
    type = Exodus
    execute_on = 'initial final'
  [../]
  [./along_line]
    type = CSV
    execute_on = final
  [../]
[]

modules/porous_flow/test/tests/jacobian/fflux04.i

# 2phase (PP), 3components (that exist in both phases), constant viscosity, constant insitu permeability
# density with constant bulk, Corey relative perm, nonzero gravity, unsaturated with vanGenuchten
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp1]
  [../]
  [./massfrac_ph1_sp0]
  [../]
  [./massfrac_ph1_sp1]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph0_sp1]
    type = RandomIC
    variable = massfrac_ph0_sp1
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph1_sp1]
    type = RandomIC
    variable = massfrac_ph1_sp1
    min = 0
    max = 0.4
  [../]
[]


[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
    gravity = '-1 -0.1 0'
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = ppgas
    gravity = '-1 -0.1 0'
  [../]
  [./flux2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 2
    variable = massfrac_ph0_sp0
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas massfrac_ph0_sp0'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/xfem/test/tests/diffusion_xfem/diffusion.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 6
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 3
    function = u_left
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_3/ring3_mu_0_2_pen_sm.i

[Mesh]
  file = ring3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = ring3_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = ring3_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/porous_flow/test/tests/fluidstate/water_vapor.i

# Tests correct calculation of properties in PorousFlowWaterVapor in the two-phase region

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pliq]
    initial_condition = 1e6
  [../]
  [./h]
    initial_condition = 8e5
    scaling = 1e-3
  [../]
[]

[AuxVariables]
  [./pressure_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temperature]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./enthalpy_water]
    type = PorousFlowPropertyAux
    variable = enthalpy_water
    property = enthalpy
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./enthalpy_gas]
    type = PorousFlowPropertyAux
    variable = enthalpy_gas
    property = enthalpy
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./pressure_water]
    type = PorousFlowPropertyAux
    variable = pressure_water
    property = pressure
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./pressure_gas]
    type = PorousFlowPropertyAux
    variable = pressure_gas
    property = pressure
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation_water
    property = saturation
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./density_water]
    type = PorousFlowPropertyAux
    variable = density_water
    property = density
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./density_gas]
    type = PorousFlowPropertyAux
    variable = density_gas
    property = density
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_water]
    type = PorousFlowPropertyAux
    variable = viscosity_water
    property = viscosity
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_gas]
    type = PorousFlowPropertyAux
    variable = viscosity_gas
    property = viscosity
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./temperature]
    type = PorousFlowPropertyAux
    variable = temperature
    property = temperature
    execute_on = 'initial timestep_end'
  [../]
[]

[Kernels]
  [./mass]
    type = PorousFlowMassTimeDerivative
    variable = pliq
  [../]
  [./heat]
    type = PorousFlowEnergyTimeDerivative
    variable = h
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pliq h'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureBC
    pe = 1e5
    lambda = 2
    pc_max = 1e6
  [../]
  [./fs]
    type = PorousFlowWaterVapor
    water_fp = water
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./watervapor]
    type = PorousFlowFluidStateSingleComponent
    porepressure = pliq
    enthalpy = h
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-13 0 0 0 1e-13 0 0 0 1e-13'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./internal_energy]
    type = PorousFlowMatrixInternalEnergy
    density = 2500
    specific_heat_capacity = 1200
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./density_water]
    type = ElementAverageValue
    variable = density_water
    execute_on = 'initial timestep_end'
  [../]
  [./density_gas]
    type = ElementAverageValue
    variable = density_gas
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_water]
    type = ElementAverageValue
    variable = viscosity_water
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_gas]
    type = ElementAverageValue
    variable = viscosity_gas
    execute_on = 'initial timestep_end'
  [../]
  [./enthalpy_water]
    type = ElementAverageValue
    variable = enthalpy_water
    execute_on = 'initial timestep_end'
  [../]
  [./enthalpy_gas]
    type = ElementAverageValue
    variable = enthalpy_gas
    execute_on = 'initial timestep_end'
  [../]
  [./sg]
    type = ElementAverageValue
    variable = saturation_gas
    execute_on = 'initial timestep_end'
  [../]
  [./sw]
    type = ElementAverageValue
    variable = saturation_water
    execute_on = 'initial timestep_end'
  [../]
  [./pwater]
    type = ElementAverageValue
    variable = pressure_water
    execute_on = 'initial timestep_end'
  [../]
  [./pgas]
    type = ElementAverageValue
    variable = pressure_gas
    execute_on = 'initial timestep_end'
  [../]
  [./temperature]
    type = ElementAverageValue
    variable = temperature
    execute_on = 'initial timestep_end'
  [../]
  [./enthalpy]
    type = ElementAverageValue
    variable = h
    execute_on = 'initial timestep_end'
  [../]
  [./liquid_mass]
    type = PorousFlowFluidMass
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./vapor_mass]
    type = PorousFlowFluidMass
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  file_base = water_vapor_twophase
  csv = true
[]

modules/combined/test/tests/mortar_tm/2d/frictionless_second/finite.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite'

[Mesh]
  patch_size = 80
  patch_update_strategy = iteration
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
  l_max_its = 30
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/porous_flow/test/tests/fluidstate/coldwater_injection.i

# Cold water injection into 1D hot reservoir (Avdonin, 1964)
#
# To generate results presented in documentation for this problem,
# set xmax = 50 and nx = 250 in the Mesh block, and dtmax = 100 and
# end_time = 1.3e5 in the Executioner block.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 25
  xmax = 20
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[AuxVariables]
  [./temperature]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./temperature]
    type = PorousFlowPropertyAux
    variable = temperature
    property = temperature
    execute_on = 'initial timestep_end'
  [../]
[]

[Variables]
  [./pliquid]
    initial_condition = 5e6
  [../]
  [./h]
    scaling = 1e-6
  [../]
[]

[ICs]
  [./hic]
    type = PorousFlowFluidPropertyIC
    variable = h
    porepressure = pliquid
    property = enthalpy
    temperature = 170
    temperature_unit = Celsius
    fp = water
  [../]
[]

[BCs]
  [./pleft]
    type = DirichletBC
    variable = pliquid
    value = 5.05e6
    boundary = left
  [../]
  [./pright]
    type = DirichletBC
    variable = pliquid
    value = 5e6
    boundary = right
  [../]
  [./hleft]
    type = DirichletBC
    variable = h
    value = 678.52e3
    boundary = left
  [../]
  [./hright]
    type = DirichletBC
    variable = h
    value = 721.4e3
    boundary = right
  [../]
[]

[Kernels]
  [./mass]
    type = PorousFlowMassTimeDerivative
    variable = pliquid
  [../]
  [./massflux]
    type = PorousFlowAdvectiveFlux
    variable = pliquid
  [../]
  [./heat]
    type = PorousFlowEnergyTimeDerivative
    variable = h
  [../]
  [./heatflux]
    type = PorousFlowHeatAdvection
    variable = h
  [../]
  [./heatcond]
    type = PorousFlowHeatConduction
    variable = h
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pliquid h'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    pc_max = 1e6
    sat_lr = 0.1
    m = 0.5
    alpha = 1e-5
  [../]
  [./fs]
    type = PorousFlowWaterVapor
    water_fp = water
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./watervapor]
    type = PorousFlowFluidStateSingleComponent
    porepressure = pliquid
    enthalpy = h
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.8e-11 0 0 0 1.8e-11 0 0 0 1.8e-11'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
    sum_s_res = 0.1
  [../]
  [./internal_energy]
    type = PorousFlowMatrixInternalEnergy
    density = 2900
    specific_heat_capacity = 740
  [../]
  [./rock_thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '20 0 0  0 20 0  0 0 20'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 5e3
  nl_abs_tol = 1e-10
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 100
  [../]
[]

[VectorPostprocessors]
  [./line]
    type = ElementValueSampler
    sort_by = x
    variable = temperature
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  perf_graph = true
  [./csv]
    type = CSV
    execute_on = final
  [../]
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/except4.i

# Exception: incorrect userobject types
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = -1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update22_cosserat.i

# Cosserat version of Capped Mohr Columb (using StressUpdate)
# Shear failure, starting from a non-symmetric stress state

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 2.0
    joint_shear_stiffness = 1.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6 5 4.1  5 7 2.1  4 2 2'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombCosseratStressUpdate
    host_youngs_modulus = 1
    host_poissons_ratio = 0.25
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/time_steppers/timesequence_stepper/timesequence_restart2.i

[Mesh]
  file = timesequence_restart1_cp/0002_mesh.cpr
[]

[Problem]
  restart_file_base = timesequence_restart1_cp/0002
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  end_time = 4.0
  [./TimeStepper]
    type = TimeSequenceStepper
    time_sequence  = '0   0.85 1.3 2 4'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_1/ring1_template2.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring1_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/tensor_mechanics/test/tests/1D_spherical/smallStrain_1DSphere.i

# This simulation models the mechanics solution for a solid sphere under
# pressure, applied on the outer surfaces, using 1D spherical symmetry
# assumpitions.  The inner center of the sphere, r = 0, is pinned to prevent
# movement of the sphere.
#
# From Bower (Applied Mechanics of Solids, 2008, available online at
# solidmechanics.org/text/Chapter4_1/Chapter4_1.htm), and applying the outer
# pressure and pinned displacement boundary conditions set in this simulation,
# the radial displacement is given by:
#
# u(r) = \frac{- P * (1 - 2 * v) * r}{E}
#
# where P is the applied pressure, v is Poisson's ration, E is Young's Modulus,
# and r is the radial position.
#
# The test assumes a radius of 4, zero displacement at r = 0mm, and an applied
# outer pressure of 1MPa.  Under these conditions in a solid sphere, the radial
# stress is constant and has a value of -1 MPa.
[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 4
  nx = 4
[]

[GlobalParams]
  displacements = 'disp_r'
[]

[Problem]
  coord_type = RSPHERICAL
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    save_in = residual_r
  [../]
[]

[AuxVariables]
  [./stress_rr]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./residual_r]
  [../]
[]

[Postprocessors]
  [./stress_rr]
    type = ElementAverageValue
    variable = stress_rr
  [../]
  [./residual_r]
    type = NodalSum
    variable = residual_r
    boundary = right
  [../]
[]

[AuxKernels]
  [./stress_rr]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_rr
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./innerDisp]
    type = DirichletBC
    boundary = left
    variable = disp_r
    value = 0.0
  [../]
  [./outerPressure]
    type = Pressure
    boundary = right
    variable = disp_r
    component = 0
    factor = 1
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.345
    youngs_modulus = 1e4
  [../]
  [./stress]
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-8

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 0.25
  dtmin = 0.0001
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/large_deform1.i

# rotate the mesh by 90degrees
# then pull in the z direction - should be no plasticity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  # rotate:
  # ynew = c*y + s*z.  znew = -s*y + c*z
  [./bottomx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = back
    function = '0'
  [../]
  [./bottomy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = back
    function = '0*y+1*z-y'
  [../]
  [./bottomz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = back
    function = '-1*y+0*z-z+if(t>0,0.5-y,0)' # note that this uses original nodal values of (x,y,z)
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = '0'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = '0*y+1*z-y'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '-1*y+0*z-z+if(t>0,0.5-y,0)' # note that this uses original nodal values of (x,y,z)
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 0.5
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-5
    debug_fspb = crash
  [../]
[]


[Executioner]
  start_time = -1
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = large_deform1
  [./csv]
    type = CSV
    [../]
  [./exodus]
    type = Exodus
    [../]
[]

modules/phase_field/test/tests/MultiSmoothCircleIC/latticesmoothcircleIC_small_invalue_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c]
    type = SpecifiedSmoothCircleIC
    variable = c
    invalue = -0.8
    outvalue = 1
    int_width = 5
    x_positions = '25 32'
    z_positions = '0 0'
    y_positions = '25 32'
    radii = '6 5'
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.5'
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 20
  l_tol = 1.0e-5
  nl_max_its = 40
  nl_rel_tol = 5.0e-14

  start_time = 0.0
  num_steps = 1
  dt = 5
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/2D_geometries/planestrain.i

# This test uses the strain calculator ComputePlaneSmallStrain,
# which is generated through the use of the TensorMechanics MasterAction.

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = square.e
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    planar_formulation = PLANE_STRAIN
    add_variables = true
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy strain_zz'
  [../]
[]

[Functions]
  [./pull]
    type = ParsedFunction
    value ='0.01 * t'
  [../]
[]

[BCs]
  [./leftx]
    type = DirichletBC
    boundary = 2
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
  [./pull]
    type = FunctionDirichletBC
    boundary = 3
    variable = disp_y
    function = pull
  [../]
[]

[Materials]
  [./linear_stress]
    type = ComputeLinearElasticStress
    block = 1
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  l_max_its = 100
  l_tol = 1e-10
  nl_max_its = 15
  nl_rel_tol = 1e-12

  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 5.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial2.i

[Mesh]
  type = FileMesh
  file = quarter_hole.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./zmin_zzero]
    type = DirichletBC
    variable = disp_z
    boundary = 'zmin'
    value = '0'
  [../]
  [./xmin_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = 'xmin'
    value = '0'
  [../]
  [./ymin_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = 'ymin'
    value = '0'
  [../]
  [./ymax_disp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'ymax'
    function = '-1E-4*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10E6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 2
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 2
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 0.01E6
    mc_edge_smoother = 29
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 1
    fill_method = symmetric_isotropic
    C_ijkl = '0 5E9' # young = 10Gpa, poisson = 0.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 1
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 1
    ep_plastic_tolerance = 1E-11
    plastic_models = mc
    max_NR_iterations = 1000
    debug_fspb = crash
  [../]
[]

# Preconditioning and Executioner options kindly provided by Andrea
[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]


[Executioner]
  end_time = 0.5
  dt = 0.1
  solve_type = NEWTON
  type = Transient

  l_tol = 1E-2
  nl_abs_tol = 1E-9
  nl_rel_tol = 1E-11
  l_max_its = 200
  nl_max_its = 400

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]


[Outputs]
  file_base = uni_axial2
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/xfem/test/tests/pressure_bc/2d_pressure_displaced_mesh.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.0 0.5 1.0 0.5'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    planar_formulation = PLANE_STRAIN
    generate_output = 'stress_xx stress_yy'
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1.0'
    y = '500 500'
  [../]
  [./bc_func_tx]
    type = ParsedFunction
    value = '0.5-(0.5-x)*cos(pi*t/2.0)-x'
  [../]
  [./bc_func_ty]
    type = ParsedFunction
    value = '(0.5-x)*sin(pi*t/2.0)+0.5'
  [../]
[]

[BCs]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    preset = false
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    preset = false
    variable = disp_x
    value = 0.0
  [../]
  [./top_right_y]
    type = FunctionDirichletBC
    boundary = 2
    preset = false
    variable = disp_y
    function = bc_func_ty
  [../]
  [./top_right_x]
    type = FunctionDirichletBC
    boundary = 2
    preset = false
    variable = disp_x
    function = bc_func_tx
  [../]
[]

[DiracKernels]
  [./pressure_x]
    type = XFEMPressure
    variable = disp_x
    component = 0
    function = pressure
    use_displaced_mesh = true
  [../]
  [./pressure_y]
    type = XFEMPressure
    variable = disp_y
    component = 1
    function = pressure
    use_displaced_mesh = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-14

# time control
  start_time = 0.0
  dt = 0.1
  end_time = 1.0
[]

[Outputs]
  file_base = 2d_pressure_displaced_mesh_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/jacobian/chem01.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Dissolution with temperature
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.25
  [../]
  [./b]
    initial_condition = 0.2
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1.234
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
  [./ini_sec_conc]
    initial_condition = 0.222
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1E5
    stoichiometry = 2
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 2.2E5
    stoichiometry = 3
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '0.5 0.8'
    reactions = '2 3'
    specific_reactive_surface_area = -44.4E-2
    kinetic_rate_constant = 0.678
    activation_energy = 4.4
    molar_volume = 3.3
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = 1.1
    eta_exponent = 1.2
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_sec_conc
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

test/tests/multiapps/move_and_reset/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '1 1 0'
    input_files = sub.i
    reset_apps = 0
    reset_time = 0.05
    move_time = 0.05
    move_positions = '2 2 0'
    move_apps = 0
    output_in_position = true
  [../]
[]

modules/combined/test/tests/gravity/gravity_rz_quad8_sm.i

# This test uses small strain formulation, and the use_displaced_mesh
# is set to false for the kernels
#
# Gravity Test
#
# This test is designed to exercise the gravity body force rz kernel.
#
# The mesh for this problem is a rectangle 10 units by 1 unit.
#
# The boundary conditions for this problem are as follows.  The
#   displacement is zero at the top.  The acceleration of gravity is 20.
#
# The material has a Young's modulus of 1e6 and a density of 2.
#
# The analytic solution for the displacement along the bar is:
#
# u(y) = -b*y^2/(2*E)+b*L*y/E
#
# The displacement at y=L is b*L^2/(2*E) = 2*20*10*10/(2*1e6) = 0.002.
#
# The analytic solution for the stress along the bar assuming linear
#   elasticity is:
#
# S(y) = b*(L-y)
#
# The stress at x=0 is b*L = 2*20*10 = 400.
#
# Note:  The simulation does not measure stress at y=0.  The stress
#   is reported at element centers.  The element closest to y=0 sits
#   at y = 1/4 and has a stress of 390.  This matches the linear
#   stress distribution that is expected.  The same situation applies
#   at y = L where the stress is zero analytically.  The nearest
#   element is at y=9.75 where the stress is 10.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = gravity_rz_quad8_test.e
[]

[Variables]
  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]
  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Kernels]
  [./gravity]
    type = Gravity
    variable = disp_y
    value = 20
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
[]

[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    shear_modulus = 0.5e6
    lambda = 0.0

    formulation = NonlinearRZ
  [../]

  [./density]
    type = Density
    block = 1
    density = 2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = gravity_rz_quad8_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/chemical_reactions/test/tests/solid_kinetics/2species_without_action.i

# Simple reaction-diffusion example without using the action.
# In this example, two primary species a and b diffuse towards each other from
# opposite ends of a porous medium, reacting when they meet to form a mineral
# precipitate
# This simulation is identical to 2species.i, but explicitly includes the AuxVariables,
# AuxKernels, and Kernels that the action in 2species.i adds

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmax = 1
  ymax = 1
  nx = 40
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0
  [../]
[]

[AuxVariables]
  [./mineral]
  [../]
[]

[AuxKernels]
  [./mineral_conc]
    type = KineticDisPreConcAux
    variable = mineral
    e_act = 1.5e4
    r_area = 1
    log_k = -6
    ref_kconst = 1e-8
    gas_const = 8.314
    ref_temp = 298.15
    sys_temp = 298.15
    sto_v = '1 1'
    v = 'a b'
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_pd]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./b_pd]
    type = PrimaryDiffusion
    variable = b
  [../]
  [./a_r]
    type = CoupledBEKinetic
    variable = a
    v = mineral
    weight = 1
  [../]
  [./b_r]
    type = CoupledBEKinetic
    variable = b
    v = mineral
    weight = 1
  [../]
[]

[BCs]
  [./a_left]
    type = DirichletBC
    variable = a
    preset = false
    boundary = left
    value = 1.0e-2
  [../]
  [./a_right]
    type = DirichletBC
    variable = a
    preset = false
    boundary = right
    value = 0
  [../]
  [./b_left]
    type = DirichletBC
    variable = b
    preset = false
    boundary = left
    value = 0
  [../]
  [./b_right]
    type = DirichletBC
    variable = b
    preset = false
    boundary = right
    value = 1.0e-2
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '5e-4 4e-3 0.4'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  end_time = 50
  dt = 5
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  file_base = 2species_out
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

test/tests/variables/block_aux_kernel/block_aux_kernel_test.i

###########################################################
# This is a simple test of the AuxVariable System.
# A single discretized explicit variable is added to the
# system which is independent of the nonlinear variables
# being solved for by the solver.
#
# @Requirement F5.10
###########################################################


[Mesh]
  file = gap_test.e
  # This test uses the geometric search system, which does not currently work
  # in parallel with DistributedMesh enabled.  For more information, see #2121.
  parallel_type = replicated
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./distance]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff u_time'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./u_time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./x]
    type = FunctionAux
    variable = disp_x
    function = 0
    block = 1
  [../]

  [./y]
    type = FunctionAux
    variable = disp_y
    function = 0
    block = 1
  [../]

  [./z]
    type = FunctionAux
    variable = disp_z
    function = t
    block = 1
  [../]
  [./gap_distance]
    type = NearestNodeDistanceAux
    variable = distance
    boundary = 2
    paired_boundary = 3
  [../]

  [./gap_distance2]
    type = NearestNodeDistanceAux
    variable = distance
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  active = 'block1_left block1_right block2_left block2_right'

  [./block1_left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./block1_right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]

  [./block2_left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./block2_right]
    type = DirichletBC
    variable = u
    boundary = 4
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 1.0
  num_steps = 8
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/outputs/intervals/no_intermediate.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    execute_on = 'initial final'
  [../]
[]

modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-min-lm-mortar-disp.i

starting_point = 2e-1
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
  scaling = 1e0
[]

[Mesh]
  file = long-bottom-block-1elem-blocks.e
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
  [./normal_lm]
    block = 3
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = 10
    master = 20
    variable = normal_lm
    master_variable = disp_x
    disp_y = disp_y
  [../]
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  active = 'num_nl cumulative contact'
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '3'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/phase_field/examples/anisotropic_interfaces/GrandPotentialSolidification.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 28
  ny = 28
  xmin = -7
  xmax = 7
  ymin = -7
  ymax = 7
  uniform_refine = 2
[]

[GlobalParams]
  radius = 0.2
  int_width = 0.1
  x1 = 0.0
  y1 = 0.0
  derivative_order = 2
[]

[Variables]
  [./w]
  [../]
  [./etaa0]
  [../]
  [./etab0]
  [../]
  [./T]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    v = 'etaa0 etab0'
  [../]
[]

[ICs]
  [./w]
    type = SmoothCircleIC
    variable = w
    # note w = A*(c-cleq), A = 1.0, cleq = 0.0 ,i.e., w = c (in the matrix/liquid phase)
    outvalue = -4.0
    invalue = 0.0
  [../]
  [./etaa0]
    type = SmoothCircleIC
    variable = etaa0
    #Solid phase
    outvalue = 0.0
    invalue = 1.0
  [../]
  [./etab0]
    type = SmoothCircleIC
    variable = etab0
    #Liquid phase
    outvalue = 1.0
    invalue = 0.0
  [../]
[]

[Kernels]
# Order parameter eta_alpha0
  [./ACa0_bulk]
    type = ACGrGrMulti
    variable = etaa0
    v =           'etab0'
    gamma_names = 'gab'
  [../]
  [./ACa0_sw]
    type = ACSwitching
    variable = etaa0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etab0 w T'
  [../]
  [./ACa0_int1]
    type = ACInterface2DMultiPhase1
    variable = etaa0
    etas = 'etab0'
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
    d2kappadgrad_etaa_name = d2kappadgrad_etaa
  [../]
  [./ACa0_int2]
    type = ACInterface2DMultiPhase2
    variable = etaa0
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
  [../]
  [./ea0_dot]
    type = TimeDerivative
    variable = etaa0
  [../]
# Order parameter eta_beta0
  [./ACb0_bulk]
    type = ACGrGrMulti
    variable = etab0
    v =           'etaa0'
    gamma_names = 'gab'
  [../]
  [./ACb0_sw]
    type = ACSwitching
    variable = etab0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etaa0 w T'
  [../]
  [./ACb0_int1]
    type = ACInterface2DMultiPhase1
    variable = etab0
    etas = 'etaa0'
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
    d2kappadgrad_etaa_name = d2kappadgrad_etab
  [../]
  [./ACb0_int2]
    type = ACInterface2DMultiPhase2
    variable = etab0
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
  [../]
  [./eb0_dot]
    type = TimeDerivative
    variable = etab0
  [../]
#Chemical potential
  [./w_dot]
    type = SusceptibilityTimeDerivative
    variable = w
    f_name = chi
  [../]
  [./Diffusion]
    type = MatDiffusion
    variable = w
    diffusivity = Dchi
  [../]
  [./coupled_etaa0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etaa0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0'
  [../]
  [./coupled_etab0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etab0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0'
  [../]
  [./T_dot]
    type = TimeDerivative
    variable = T
  [../]
  [./CoefDiffusion]
    type = Diffusion
    variable = T
  [../]
  [./etaa0_dot_T]
    type = CoefCoupledTimeDerivative
    variable = T
    v = etaa0
    coef = -5.0
  [../]
[]

[Materials]
  [./ha]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = ha
    all_etas = 'etaa0 etab0'
    phase_etas = 'etaa0'
  [../]
  [./hb]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = hb
    all_etas = 'etaa0 etab0'
    phase_etas = 'etab0'
  [../]
  [./omegaa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegaa
    material_property_names = 'Vm ka caeq'
    function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
  [../]
  [./omegab]
    type = DerivativeParsedMaterial
    args = 'w T'
    f_name = omegab
    material_property_names = 'Vm kb cbeq S Tm'
    function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq-S*(T-Tm)'
  [../]
  [./rhoa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhoa
    material_property_names = 'Vm ka caeq'
    function = 'w/Vm^2/ka + caeq/Vm'
  [../]
  [./rhob]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhob
    material_property_names = 'Vm kb cbeq'
    function = 'w/Vm^2/kb + cbeq/Vm'
  [../]
  [./kappaa]
    type = InterfaceOrientationMultiphaseMaterial
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
    d2kappadgrad_etaa_name = d2kappadgrad_etaa
    etaa = etaa0
    etab = etab0
    anisotropy_strength = 0.05
    kappa_bar = 0.05
    outputs = exodus
    output_properties = 'kappaa'
  [../]
  [./kappab]
    type = InterfaceOrientationMultiphaseMaterial
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
    d2kappadgrad_etaa_name = d2kappadgrad_etab
    etaa = etab0
    etab = etaa0
    anisotropy_strength = 0.05
    kappa_bar = 0.05
    outputs = exodus
    output_properties = 'kappab'
  [../]
  [./const]
    type = GenericConstantMaterial
    prop_names =  'L     D    chi  Vm   ka    caeq kb    cbeq  gab mu   S   Tm'
    prop_values = '33.33 1.0  0.1  1.0  10.0  0.1  10.0  0.9   4.5 10.0 1.0 5.0'
  [../]
  [./Mobility]
    type = ParsedMaterial
    f_name = Dchi
    material_property_names = 'D chi'
    function = 'D*chi'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      31'
   l_tol = 1.0e-3
  l_max_its = 30
  nl_max_its = 15
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1e-10
  end_time = 2.0
  dtmax = 0.05
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.0005
    cutback_factor = 0.7
    growth_factor = 1.2
  [../]
[]

[Adaptivity]
 initial_steps = 5
 max_h_level = 3
 initial_marker = err_eta
 marker = err_bnds
[./Markers]
   [./err_eta]
     type = ErrorFractionMarker
     coarsen = 0.3
     refine = 0.95
     indicator = ind_eta
   [../]
   [./err_bnds]
     type = ErrorFractionMarker
     coarsen = 0.3
     refine = 0.95
     indicator = ind_bnds
   [../]
 [../]
 [./Indicators]
   [./ind_eta]
     type = GradientJumpIndicator
     variable = etaa0
    [../]
    [./ind_bnds]
      type = GradientJumpIndicator
      variable = bnds
   [../]
 [../]
[]

[Outputs]
  interval = 5
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer_vector/master_size_mismatch.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_prop_a]
    type = UniformDistribution
    lower_bound = 1980
    upper_bound = 1981
  []
  [uniform_prop_b]
    type = UniformDistribution
    lower_bound = 1949
    upper_bound = 1950
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_prop_a uniform_prop_b'
    execute_on = 'initial timestep_end' # create new random numbers on initial and timestep_end
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
    execute_on = 'initial timestep_end'
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'Materials/*/prop_values'
    to_control = 'stochastic'
    execute_on = 'initial timestep_end'
    check_multiapp_execute_on = false
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'initial timestep_end'
[]

modules/porous_flow/test/tests/basic_advection/except2.i

# PorousFlowDarcyVelocityMaterial attempts to have at_nodes = true
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./P]
  [../]
[]

[ICs]
  [./P]
    type = FunctionIC
    variable = P
    function = '2*(1-x)'
  [../]
  [./u]
    type = FunctionIC
    variable = u
    function = 'if(x<0.1,1,0)'
  [../]
[]

[Kernels]
  [./u_dot]
    type = TimeDerivative
    variable = u
  [../]
  [./u_advection]
    type = PorousFlowBasicAdvection
    variable = u
    phase = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = ''
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 4
      thermal_expansion = 0
      viscosity = 150.0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = P
    capillary_pressure = pc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '5 0 0 0 5 0 0 0 5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  [../]
  [./darcy_velocity]
    type = PorousFlowDarcyVelocityMaterial
    gravity = '0.25 0 0'
    at_nodes = true
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 1
    variable = u
  [../]
  [./right]
    type = DirichletBC
    boundary = right
    value = 0
    variable = u
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -snes_rtol'
    petsc_options_value = ' lu       1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 5
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
[]

modules/porous_flow/test/tests/poro_elasticity/pp_generation.i

# A sample is constrained on all sides and its boundaries are
# also impermeable.  Fluid is pumped into the sample via a
# volumetric source (ie kg/second per cubic meter), and the
# rise in porepressure is observed.
#
# Source = s  (units = kg/m^3/second)
#
# Expect:
# fluid_mass = mass0 + s*t
# stress = 0 (remember this is effective stress)
# Porepressure = fluid_bulk*log(fluid_mass_density/density_P0), where fluid_mass_density = fluid_mass*porosity
# porosity = biot+(phi0-biot)*exp(pp(biot-1)/solid_bulk)
#
# Parameters:
# Biot coefficient = 0.3
# Phi0 = 0.1
# Solid Bulk modulus = 2
# fluid_bulk = 13
# density_P0 = 1


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = porepressure
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = porepressure
    gravity = '0 0 0'
    fluid_component = 0
  [../]
  [./source]
    type = BodyForce
    function = 0.1
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./porosity]
    type = PorousFlowPropertyAux
    variable = porosity
    property = porosity
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 13
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.1
    biot_coefficient = 0.3
    solid_bulk = 2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0   0 1 0   0 0 1' # unimportant
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0 # unimportant in this fully-saturated situation
    phase = 0
  [../]
[]

[Functions]
  [./porosity_analytic]
    type = ParsedFunction
    value = 'biot+(phi0-biot)*exp(pp*(biot-1)/bulk)'
    vars = 'biot phi0 pp bulk'
    vals = '0.3 0.1 p0 2'
  [../]
[]

[Postprocessors]
  [./fluid_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
    use_displaced_mesh = true
  [../]
  [./porosity]
    type = PointValue
    outputs = 'console csv'
    point = '0 0 0'
    variable = porosity
  [../]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./porosity_analytic]
    type = FunctionValuePostprocessor
    function = porosity_analytic
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]

[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_max_it -snes_stol'
    petsc_options_value = 'bcgs bjacobi 10000 1E-11'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = pp_generation
  [./csv]
    type = CSV
  [../]
[]

test/tests/controls/error/no_parameter_found.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

[Controls]
  [./func_control]
    type = TestControl
    test_type = 'real'
    parameter = 'unknown_param_name'
    execute_on = 'initial timestep_begin'
  [../]
[]

modules/combined/test/tests/elastic_thermal_patch/elastic_thermal_jacobian_rz_smp.i

# This problem is intended to exercise the Jacobian for coupled RZ
# problems.  Only two iterations should be needed.

[GlobalParams]
  temperature = temp
  volumetric_locking_correction = true
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_thermal_patch_rz_test.e
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '0'
  [../]
  [./uz]
    type = ParsedFunction
    value = '0'
  [../]
  [./body]
    type = ParsedFunction
    value = '-400/x'
  [../]
  [./temp]
    type = ParsedFunction
    value = '117.56+100*t'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules]
    [TensorMechanics]
        [Master]
            displacements = 'disp_x disp_y'
            [All]
                displacements = 'disp_x disp_y'
                add_variables = true
                strain = SMALL
                incremental = true
                eigenstrain_names = eigenstrain
                generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
            [../]
        [../]
    [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = ur
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = uz
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = 10
    function = temp
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 117.56
    thermal_expansion_coeff = 1e-6
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]

  [./heat]
    type = HeatConductionMaterial
    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    density = 0.283
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-12

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[]

[Outputs]
  file_base = elastic_thermal_jacobian_rz_smp_out
  [./exodus]
    type = Exodus
    execute_on = 'initial timestep_end nonlinear'
    nonlinear_residual_dt_divisor = 100
  [../]
[]

modules/combined/test/tests/elastic_patch/elastic_patch_rz_nonlinear_sm.i

#
# This problem is taken from the Abaqus verification manual:
#   "1.5.4 Patch test for axisymmetric elements"
# The stress solution is given as:
#   xx = yy = zz = 19900
#   xy = 0
#
# If strain = log(1+1e-2) = 0.00995033...
# then
# stress = E/(1+PR)/(1-2*PR)*(1-PR +PR +PR)*strain = 19900.6617
# with E = 1e6 and PR = 0.25.
#
# The code computes stress = 19900.6617 when
# increment_calculation = eigen.  There is a small error when the
# rashidapprox option is used.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_patch_rz.e
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '1e-2*x'
  [../]
  [./uz]
    type = ParsedFunction
    value = '1e-2*y'
  [../]
  [./body]
    type = ParsedFunction
    value = '0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Kernels]
  [./body]
    type = BodyForce
    variable = disp_y
    value = 1
    function = body
  [../]

  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = 10
    function = ur
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 10
    function = uz
  [../]

  [./temp]
    type = DirichletBC
    variable = temp
    preset = false
    boundary = 10
    value = 117.56
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.25

    temp = temp
    formulation = NonlinearRZ
    increment_calculation = eigen
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = 1

    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    block = 1
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  dt = 1
  dtmin = 1
  num_steps = 1
  nl_rel_tol = 1e-7
[]

[Outputs]
  file_base = elastic_patch_rz_nonlinear_out
  exodus = true
[]

test/tests/userobjects/setup_interface_count/nodal.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    ny = 2
  []
  [./right_side]
    input = gen
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0 0 0'
    top_right = '1 0.5 0'
    block_id = 1
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [./initial] # 1 per simulation
    type = NodalSetupInterfaceCount
    count_type = 'initial'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./timestep] # once per timestep
    type = NodalSetupInterfaceCount
    count_type = 'timestep'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./subdomain] # 0, not execute for this type of object
    type = NodalSetupInterfaceCount
    count_type = 'subdomain'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./initialize] # 1 for initial and 2 for each timestep
    type = NodalSetupInterfaceCount
    count_type = 'initialize'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./finalize] # 1 for initial and 2 for each timestep
    type = NodalSetupInterfaceCount
    count_type = 'finalize'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./execute] # 6 for initial and 12 for each timestep (3 nodes on two boundaries)
    type = NodalSetupInterfaceCount
    count_type = 'execute'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
  [./threadjoin] # 1 for initial and 2 for each timestep
    type = NodalSetupInterfaceCount
    count_type = 'threadjoin'
    execute_on = 'initial timestep_begin timestep_end'
    boundary = '1 2'
  [../]
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/multi/two_surface02.i

# Plasticit models:
# SimpleTester with a = 0 and b = 1 and strength = 1
# SimpleTester with a = 1 and b = 1 and strength = 2
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 1.5E-6m in the y z directions.
# trial stress_zz = 1.5 and stress_yy = 1.5
#
# Then both  SimpleTesters should activate, and the final stress
# should have have stress_zz = 1 = stress_yy (ie, the "corner" point)
# the plastic strain for SimpleTester1 should be zero

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1.5E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.5E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
[]

[UserObjects]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 2
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = two_surface02
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/gap_heat_transfer_htonly/planar_xz.i

# 1-D Gap Heat Transfer Test without mechanics
#
# This test exercises 1-D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of two element blocks in the x-z plane.  Each element block
# is a square. They sit next to one another with a unit between them.
#
# The conductivity of both blocks is set very large to achieve a uniform temperature
# across each block. The temperature of the far bottom boundary
# is ramped from 100 to 200 over one time unit.  The temperature of the far top
# boundary is held fixed at 100.
#
# A simple analytical solution is possible for the heat flux between the blocks:
#
# Flux = (T_left - T_right) * (gapK/gap_width)
#
# The gap conductivity is specified as 1, thus
#
# gapK(Tavg) = 1.0*Tavg
#
# The heat flux across the gap at time = 1 is then:
#
# Flux = 100 * (1.0/1.0) = 100
#
# For comparison, see results from the flux post processors.  These results
# are the same as for the unit 1-D gap heat transfer between two unit cubes.

[Mesh]
  [file]
    type = FileMeshGenerator
    file = simple_2D.e
  []
  [./rotate]
    type = TransformGenerator
    transform = ROTATE
    vector_value = '0 90 0'
    input = file
  [../]
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '100 200 200'
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_cond]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]


[BCs]
  [./temp_far_bottom]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]
  [./temp_far_top]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[AuxKernels]
  [./conductance]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_cond
    boundary = 2
  [../]
[]

[Materials]
  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 100000000.0
  [../]
  [./density]
    type = Density
    block = '1 2'
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'
  nl_rel_tol = 1e-12
  l_tol = 1e-3
  l_max_its = 100

  dt = 1e-1
  end_time = 1.0
[]

[Postprocessors]
  [./temp_bottom]
    type = SideAverageValue
    boundary = 2
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./temp_top]
    type = SideAverageValue
    boundary = 3
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./flux_bottom]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
    execute_on = 'initial timestep_end'
  [../]

  [./flux_top]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/second_order_elements/diffusion_3d_hex20.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 4
  nz = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.2
  elem_type = HEX20
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./square_planar_cut_uo]
    type = RectangleCutUserObject
    cut_data = '  0.35 1.01 -0.001
                  0.35 0.49 -0.001
                  0.35 0.49  0.201
                  0.35 1.01  0.201'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = FunctionDirichletBC
    variable = u
    boundary = left
    function = u_left
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/examples/periodic_strain/global_strain_pfm_3D.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 20
    ny = 20
    nz = 20
    xmin = -0.5
    xmax = 0.5
    ymin = -0.5
    ymax = 0.5
    zmin = -0.5
    zmax = 0.5
  []
  [./cnode]
    input = gen
    type = ExtraNodesetGenerator
    coord = '0.0 0.0 0.0'
    new_boundary = 100
  [../]
[]

[Variables]
  [./u_x]
  [../]
  [./u_y]
  [../]
  [./u_z]
  [../]
  [./global_strain]
    order = SIXTH
    family = SCALAR
  [../]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = 'sin(2*x*pi)*sin(2*y*pi)*sin(2*z*pi)*0.05+0.6'
    [../]
  [../]
  [./w]
  [../]
[]

[AuxVariables]
  [./local_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./s00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./s01]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./s10]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./s11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e01]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e10]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e11]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = GlobalDisplacementAux
    variable = disp_x
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 0
  [../]
  [./disp_y]
    type = GlobalDisplacementAux
    variable = disp_y
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 1
  [../]
  [./disp_z]
    type = GlobalDisplacementAux
    variable = disp_z
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 2
  [../]
  [./local_free_energy]
    type = TotalFreeEnergy
    execute_on = 'initial LINEAR'
    variable = local_energy
    interfacial_vars = 'c'
    kappa_names = 'kappa_c'
  [../]
  [./s00]
    type = RankTwoAux
    variable = s00
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./s01]
    type = RankTwoAux
    variable = s01
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
  [../]
  [./s10]
    type = RankTwoAux
    variable = s10
    rank_two_tensor = stress
    index_i = 1
    index_j = 0
  [../]
  [./s11]
    type = RankTwoAux
    variable = s11
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
  [../]
  [./e00]
    type = RankTwoAux
    variable = e00
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 0
  [../]
  [./e01]
    type = RankTwoAux
    variable = e01
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 1
  [../]
  [./e10]
    type = RankTwoAux
    variable = e10
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 0
  [../]
  [./e11]
    type = RankTwoAux
    variable = e11
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
  [../]
[]

[GlobalParams]
  derivative_order = 2
  enable_jit = true
  displacements = 'u_x u_y u_z'
  block = 0
[]

[Kernels]
  [./TensorMechanics]
  [../]

  # Cahn-Hilliard kernels
  [./c_dot]
    type = CoupledTimeDerivative
    variable = w
    v = c
    block = 0
  [../]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    block = 0
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
    block = 0
  [../]
[]

[ScalarKernels]
  [./global_strain]
    type = GlobalStrain
    variable = global_strain
    global_strain_uo = global_strain_uo
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y z'
      variable = 'c w u_x u_y u_z'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = u_x
    value = 0
  [../]
  [./centerfix_y]
    type = DirichletBC
    boundary = 100
    variable = u_y
    value = 0
  [../]
  [./centerfix_z]
    type = DirichletBC
    boundary = 100
    variable = u_z
    value = 0
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'M   kappa_c'
    prop_values = '0.2 0.01   '
  [../]

  [./shear1]
    type = GenericConstantRankTwoTensor
    tensor_values = '0 0 0 0.5 0.5 0.5'
    tensor_name = shear1
  [../]
  [./shear2]
    type = GenericConstantRankTwoTensor
    tensor_values = '0 0 0 -0.5 -0.5 -0.5'
    tensor_name = shear2
  [../]
  [./expand3]
    type = GenericConstantRankTwoTensor
    tensor_values = '1 1 1 0 0 0'
    tensor_name = expand3
  [../]

  [./weight1]
    type = DerivativeParsedMaterial
    function = '0.3*c^2'
    f_name = weight1
    args = c
  [../]
  [./weight2]
    type = DerivativeParsedMaterial
    function = '0.3*(1-c)^2'
    f_name = weight2
    args = c
  [../]
  [./weight3]
    type = DerivativeParsedMaterial
    function = '4*(0.5-c)^2'
    f_name = weight3
    args = c
  [../]

  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    global_strain = global_strain
    eigenstrain_names = eigenstrain
  [../]

  [./eigenstrain]
    type = CompositeEigenstrain
    tensors = 'shear1  shear2  expand3'
    weights = 'weight1 weight2 weight3'
    args = c
    eigenstrain_name = eigenstrain
  [../]

  [./global_strain]
    type = ComputeGlobalStrain
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
  [../]

  [./stress]
    type = ComputeLinearElasticStress
  [../]

  # chemical free energies
  [./chemical_free_energy]
    type = DerivativeParsedMaterial
    f_name = Fc
    function = '4*c^2*(1-c)^2'
    args = 'c'
    outputs = exodus
    output_properties = Fc
  [../]

  # elastic free energies
  [./elastic_free_energy]
    type = ElasticEnergyMaterial
    f_name = Fe
    args = 'c'
    outputs = exodus
    output_properties = Fe
  [../]

  # free energy (chemical + elastic)
  [./free_energy]
    type = DerivativeSumMaterial
    block = 0
    f_name = F
    sum_materials = 'Fc Fe'
    args = 'c'
  [../]
[]

[UserObjects]
  [./global_strain_uo]
    type = GlobalStrainUserObject
    execute_on = 'Initial Linear Nonlinear'
  [../]
[]

[Postprocessors]
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    execute_on = 'initial TIMESTEP_END'
    variable = local_energy
  [../]
  [./total_solute]
    type = ElementIntegralVariablePostprocessor
    execute_on = 'initial TIMESTEP_END'
    variable = c
  [../]
  [./min]
    type = ElementExtremeValue
    execute_on = 'initial TIMESTEP_END'
    value_type = min
    variable = c
  [../]
  [./max]
    type = ElementExtremeValue
    execute_on = 'initial TIMESTEP_END'
    value_type = max
    variable = c
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  line_search = basic

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  l_max_its = 30
  nl_max_its = 12

  l_tol = 1.0e-4

  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  end_time = 2.0

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.01
    growth_factor = 1.5
    cutback_factor = 0.8
    optimal_iterations = 9
    iteration_window = 2
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  print_linear_residuals = false
  exodus = true
  [./table]
    type = CSV
    delimiter = ' '
  [../]
[]

test/tests/multiapps/sub_cycling_failure/master_gold.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Functions]
  # These mimic the behavior of the failing solve
  [./dts]
    type = PiecewiseLinear
    x = '0    0.1   0.15'
    y = '0.1  0.05  0.1'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub_gold.i
    sub_cycling = true
  [../]
[]

modules/combined/test/tests/normalized_penalty/sm/normalized_penalty_kin_sm.i

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Mesh]
  file = normalized_penalty.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Functions]
  [./left_x]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 0.02 0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    extra_vector_tags = 'ref'
  [../]
[]

[Contact]
  [./m3_s2]
    master = 3
    slave = 2
    penalty = 1e10
    normalize_penalty = true
    system = constraint
    tangential_tolerance = 1e-3
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./left_x]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    function = left_x
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2 3 4'
    value = 0.0
  [../]

  [./right]
    type = DirichletBC
    variable = disp_x
    boundary = '3 4'
    value = 0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = '1 2 3 4 1000'

    youngs_modulus = 3e8
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-12
  nl_abs_tol = 5e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 0.5
  num_steps = 4
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/coupled_solution_dofs/coupled_solution_dofs.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./L2_norm]
    type = ElementL2Norm
    variable = u
  [../]
  [./integral]
    type = ElementIntegralVariablePostprocessor
    variable = u
  [../]
  [./direct_sum]
    type = ElementMomentSum
    variable = u
  [../]
  [./direct_sum_old]
    type = ElementMomentSum
    variable = u
    implicit = false
  [../]
  [./direct_sum_older]
    type = ElementMomentSum
    variable = u
    use_old = true
    implicit = false
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  nl_abs_tol = 1e-12
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_3/plane3_template1.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane3_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'asm'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/level_set/examples/vortex/vortex_supg.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmax = 1
  ymax = 1
  nx = 16
  ny = 16
  uniform_refine = 2
  elem_type = QUAD9
[]

[AuxVariables]
  [./vel_x]
    family = LAGRANGE
    order = FIRST
  [../]
  [./vel_y]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[AuxKernels]
  [./vel_x]
    type = FunctionAux
    function = vel_x
    variable = vel_x
    execute_on = 'initial timestep_begin'
  [../]
  [./vel_y]
    type = FunctionAux
    function = vel_y
    variable = vel_y
    execute_on = 'initial timestep_begin'
  [../]
[]

[Variables]
  [./phi]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[Functions]
  [./phi_exact]
    type = LevelSetOlssonBubble
    epsilon = 0.01184
    center = '0.5 0.75 0'
    radius = 0.15
  [../]
  [./vel_x]
    type = LevelSetOlssonVortex
    component = x
    reverse_time = 2
  [../]
  [./vel_y]
    type = LevelSetOlssonVortex
    component = y
    reverse_time = 2
  [../]
[]

[ICs]
  [./phi_ic]
    type = FunctionIC
    function = phi_exact
    variable = phi
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = phi
  [../]
  [./advection]
    type = LevelSetAdvection
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  [../]
  [./advection_supg]
    type = LevelSetAdvectionSUPG
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  [../]
  [./time_supg]
    type = LevelSetTimeDerivativeSUPG
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  [../]
[]

[Postprocessors]
  [./area]
    type = LevelSetVolume
    threshold = 0.5
    variable = phi
    location = outside
    execute_on = 'initial timestep_end'
  [../]
  [./cfl]
    type = LevelSetCFLCondition
    velocity_x = vel_x
    velocity_y = vel_y
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  start_time = 0
  end_time = 2
  scheme = crank-nicolson
  petsc_options_iname = '-pc_type -pc_sub_type'
  petsc_options_value = 'asm      ilu'
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = cfl
    scale = 0.8
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/drucker_prager/small_deform3_inner_edge.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-1.7E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    smoother = 8
    mc_interpolation_scheme = inner_edge
    yield_function_tolerance = 1E-7
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-13
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3_inner_edge
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/restart/restart_add_variable/transient_with_stateful.i

# We run a simple problem (5 time steps and save off the solution)
# In part2, we load the solution and solve a steady problem. The test check, that the initial state in part 2 is the same as the last state from part1

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = -4+(x*x+y*y)
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./diffusivity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./out_diffusivity]
    type = MaterialRealAux
    variable = diffusivity
    property = diffusivity
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = MatDiffusionTest
    variable = u
    prop_name = diffusivity
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Materials]
  [./mat]
    type = StatefulMaterial
    block = 0
    initial_diffusivity = 0.5
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  dt = 0.2
  start_time = 0
  num_steps = 5
[]

[Outputs]
  checkpoint = true
  [./out]
    type = Exodus
    elemental_as_nodal = true
    execute_elemental_on = none
  [../]
[]

test/tests/vectorpostprocessors/time_data/time_data.i

###############################################################
# The following tests that the CSV output object can include an
# additional .csv file that contains the time and timestep
# data from VectorPostprocessor object.
###############################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[VectorPostprocessors]
  [./line_sample]
    type = LineValueSampler
    variable = 'u v'
    start_point = '0 0.5 0'
    end_point = '1 0.5 0'
    num_points = 11
    sort_by = id
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'initial timestep_end'
  [./out]
    type = CSV
    time_data = true
    interval = 2
  [../]
[]

modules/tensor_mechanics/test/tests/tensile/small_deform4.i

# checking for small deformation
# A single element is stretched by 0.75E-6m in the z and x directions
# This causes the return direction to be along the hypersurface sigma_I = sigma_II
# tensile_strength is set to 1Pa, tip_smoother = 0, edge_smoother = 25degrees
# Then A + B + C = 0.609965
#
# The final stress should have meanstress = 0.680118 and bar(sigma) = 0.52443, and sigma_zz = sigma_xx = 0.982896

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.75E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.75E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./mc]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    yield_function_tolerance = 1E-6
    tensile_tip_smoother = 0.0
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform4
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/random4.i

# Using CappedMohrCoulomb
# Plasticity models:
# Tensile strength = 0.1MPa
# Compressive strength = 1.0MPa
# Cohesion = 1MPa
# Friction angle = dilation angle = 0.5
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 100
  ny = 12
  nz = 1
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 12
  zmin = 0
  zmax = 1
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f5]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f6]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f7]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f8]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f9]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f10]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./f3]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 3
    variable = f3
  [../]
  [./f4]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 4
    variable = f4
  [../]
  [./f5]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 5
    variable = f5
  [../]
  [./f6]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 6
    variable = f6
  [../]
  [./f7]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 7
    variable = f7
  [../]
  [./f8]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 8
    variable = f8
  [../]
  [./f9]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 9
    variable = f9
  [../]
  [./f10]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 10
    variable = f10
  [../]
  [./f11]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 11
    variable = f11
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = int1
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./tot_iters]
    type = ElementIntegralMaterialProperty
    mat_prop = plastic_NR_iterations
    outputs = console
  [../]
  [./intnl0_max]
    type = ElementExtremeValue
    variable = int0
    outputs = console
  [../]
  [./intnl1_max]
    type = ElementExtremeValue
    variable = int1
    outputs = console
  [../]
  [./raw_f0]
    type = ElementExtremeValue
    variable = f0
    outputs = console
  [../]
  [./raw_f1]
    type = ElementExtremeValue
    variable = f1
    outputs = console
  [../]
  [./raw_f2]
    type = ElementExtremeValue
    variable = f2
    outputs = console
  [../]
  [./raw_f3]
    type = ElementExtremeValue
    variable = f3
    outputs = console
  [../]
  [./raw_f4]
    type = ElementExtremeValue
    variable = f4
    outputs = console
  [../]
  [./raw_f5]
    type = ElementExtremeValue
    variable = f5
    outputs = console
  [../]
  [./raw_f6]
    type = ElementExtremeValue
    variable = f6
    outputs = console
  [../]
  [./raw_f7]
    type = ElementExtremeValue
    variable = f7
    outputs = console
  [../]
  [./raw_f8]
    type = ElementExtremeValue
    variable = f8
    outputs = console
  [../]
  [./raw_f9]
    type = ElementExtremeValue
    variable = f9
    outputs = console
  [../]
  [./raw_f10]
    type = ElementExtremeValue
    variable = f10
    outputs = console
  [../]
  [./raw_f11]
    type = ElementExtremeValue
    variable = f11
    outputs = console
  [../]
  [./iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./f0]
    type = FunctionValuePostprocessor
    function = should_be_zero0_fcn
  [../]
  [./f1]
    type = FunctionValuePostprocessor
    function = should_be_zero1_fcn
  [../]
  [./f2]
    type = FunctionValuePostprocessor
    function = should_be_zero2_fcn
  [../]
  [./f3]
    type = FunctionValuePostprocessor
    function = should_be_zero3_fcn
  [../]
  [./f4]
    type = FunctionValuePostprocessor
    function = should_be_zero4_fcn
  [../]
  [./f5]
    type = FunctionValuePostprocessor
    function = should_be_zero5_fcn
  [../]
  [./f6]
    type = FunctionValuePostprocessor
    function = should_be_zero6_fcn
  [../]
  [./f7]
    type = FunctionValuePostprocessor
    function = should_be_zero7_fcn
  [../]
  [./f8]
    type = FunctionValuePostprocessor
    function = should_be_zero8_fcn
  [../]
  [./f9]
    type = FunctionValuePostprocessor
    function = should_be_zero9_fcn
  [../]
  [./f10]
    type = FunctionValuePostprocessor
    function = should_be_zero10_fcn
  [../]
  [./f11]
    type = FunctionValuePostprocessor
    function = should_be_zero11_fcn
  [../]
[]

[Functions]
  [./should_be_zero0_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f0'
  [../]
  [./should_be_zero1_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f1'
  [../]
  [./should_be_zero2_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f2'
  [../]
  [./should_be_zero3_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f3'
  [../]
  [./should_be_zero4_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f4'
  [../]
  [./should_be_zero5_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f5'
  [../]
  [./should_be_zero6_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f6'
  [../]
  [./should_be_zero7_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f7'
  [../]
  [./should_be_zero8_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f8'
  [../]
  [./should_be_zero9_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f9'
  [../]
  [./should_be_zero10_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f10'
  [../]
  [./should_be_zero11_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f11'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E6
    value_residual = 2E6
    internal_limit = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E7
    value_residual = 0.5E7
    internal_limit = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningCubic
    value_0 = 2E6
    value_residual = 1E6
    internal_limit = 1
  [../]
  [./phi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.6
    value_residual = 0.2
    internal_limit = 1
  [../]
  [./psi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.5
    value_residual = 0.1
    internal_limit = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 1.3E9'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 1E5
    max_NR_iterations = 1000
    yield_function_tol = 1.0E-1
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  dtmin = 1
  type = Transient
[]


[Outputs]
  file_base = random4
  csv = true
[]

modules/combined/test/tests/phase_field_fracture/crack2d_aniso_hist_false.i

#This input uses PhaseField-Nonconserved Action to add phase field fracture bulk rate kernels
[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 40
    ny = 20
    ymax = 0.5
  []
  [./noncrack]
    type = BoundingBoxNodeSetGenerator
    new_boundary = noncrack
    bottom_left = '0.5 0 0'
    top_right = '1 0 0'
    input = gen
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./All]
        add_variables = true
        strain = SMALL
        additional_generate_output = 'strain_yy stress_yy'
        planar_formulation = PLANE_STRAIN
      [../]
    [../]
  [../]
  [./PhaseField]
    [./Nonconserved]
      [./c]
        free_energy = F
        kappa = kappa_op
        mobility = L
      [../]
    [../]
  [../]
[]

[Kernels]
  [./solid_x]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_x
    component = 0
    c = c
  [../]
  [./solid_y]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_y
    component = 1
    c = c
  [../]
[]

[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 't'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = noncrack
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0
  [../]
[]

[Materials]
  [./pfbulkmat]
    type = GenericConstantMaterial
    prop_names = 'gc_prop l visco'
    prop_values = '1e-3 0.05 1e-6'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '127.0 70.8 70.8 127.0 70.8 127.0 73.55 73.55 73.55'
    fill_method = symmetric9
    euler_angle_1 = 30
    euler_angle_2 = 0
    euler_angle_3 = 0
  [../]
  [./define_mobility]
    type = ParsedMaterial
    material_property_names = 'gc_prop visco'
    f_name = L
    function = '1.0/(gc_prop * visco)'
  [../]
  [./define_kappa]
    type = ParsedMaterial
    material_property_names = 'gc_prop l'
    f_name = kappa_op
    function = 'gc_prop * l'
  [../]
  [./damage_stress]
    type = ComputeLinearElasticPFFractureStress
    c = c
    E_name = 'elastic_energy'
    D_name = 'degradation'
    F_name = 'local_fracture_energy'
    decomposition_type = stress_spectral
  [../]
  [./degradation]
    type = DerivativeParsedMaterial
    f_name = degradation
    args = 'c'
    function = '(1.0-c)^2*(1.0 - eta) + eta'
    constant_names       = 'eta'
    constant_expressions = '1.0e-6'
    derivative_order = 2
  [../]
  [./local_fracture_energy]
    type = DerivativeParsedMaterial
    f_name = local_fracture_energy
    args = 'c'
    material_property_names = 'gc_prop l'
    function = 'c^2 * gc_prop / 2 / l'
    derivative_order = 2
  [../]
  [./fracture_driving_energy]
    type = DerivativeSumMaterial
    args = c
    sum_materials = 'elastic_energy local_fracture_energy'
    derivative_order = 2
    f_name = F
  [../]
[]

[Postprocessors]
  [./av_stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./av_strain_yy]
    type = SideAverageValue
    variable = disp_y
    boundary = top
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_factor_mat_solving_package'
  petsc_options_value = 'lu superlu_dist'

  nl_rel_tol = 1e-8
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 10

  dt = 2e-6
  num_steps = 5
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_simple_linear/linear-hand-coded.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1.0e10
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05

  #Preconditioned JFNK (default)
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
  file_base = "linear-out"
[]

modules/peridynamics/test/tests/generalized_plane_strain/generalized_plane_strain_OSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  scalar_out_of_plane_strain = scalar_strain_zz
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./stress_zz]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/Peridynamics/Mechanics]
  [./Master]
    [./all]
      formulation = ORDINARY_STATE
    [../]
  [../]
  [./GeneralizedPlaneStrain]
    [./all]
      formulation = ORDINARY_STATE
      out_of_plane_stress_variable = stress_zz
    [../]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]

  [./stress_zz]
    type = NodalRankTwoPD
    variable = stress_zz

    poissons_ratio = 0.3
    youngs_modulus = 1e6
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5

    rank_two_tensor = stress
    output_type = component
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./react_z]
    type = NodalVariableIntegralPD
    variable = stress_zz
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    boundary = 1000
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 1000
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]

  [./force_density]
    type = ComputeSmallStrainVariableHorizonMaterialOSPD
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  file_base = generalized_plane_strain_OSPD
[]

modules/combined/examples/phase_field-mechanics/Pattern1.i

#
# Pattern example 1
#
# Phase changes driven by a combination mechanical (elastic) and chemical
# driving forces. In this three phase system a matrix phase, an oversized and
# an undersized precipitate phase compete. The chemical free energy favors a
# phase separation into either precipitate phase. A mix of both precipitate
# emerges to balance lattice expansion and contraction.
#
# This example demonstrates the use of
# * ACMultiInterface
# * SwitchingFunctionConstraintEta and SwitchingFunctionConstraintLagrange
# * DerivativeParsedMaterial
# * ElasticEnergyMaterial
# * DerivativeMultiPhaseMaterial
# * MultiPhaseStressMaterial
# which are the components to se up a phase field model with an arbitrary number
# of phases
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 80
  ny = 80
  nz = 0
  xmin = -20
  xmax = 20
  ymin = -20
  ymax = 20
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  # CahnHilliard needs the third derivatives
  derivative_order = 3
  enable_jit = true
  displacements = 'disp_x disp_y'
[]

# AuxVars to compute the free energy density for outputting
[AuxVariables]
  [./local_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./cross_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./local_free_energy]
    type = TotalFreeEnergy
    variable = local_energy
    interfacial_vars = 'c'
    kappa_names = 'kappa_c'
    additional_free_energy = cross_energy
  [../]
  [./cross_terms]
    type = CrossTermGradientFreeEnergy
    variable = cross_energy
    interfacial_vars = 'eta1 eta2 eta3'
    kappa_names = 'kappa11 kappa12 kappa13
                   kappa21 kappa22 kappa23
                   kappa31 kappa32 kappa33'
  [../]
[]

[Variables]
  # Solute concentration variable
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      min = 0
      max = 0.8
      seed = 1235
    [../]
  [../]

  # Order parameter for the Matrix
  [./eta1]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.5
  [../]
  # Order parameters for the 2 different inclusion orientations
  [./eta2]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.1
  [../]
  [./eta3]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.1
  [../]

  # Mesh displacement
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  # Lagrange-multiplier
  [./lambda]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1.0
  [../]
[]

[Kernels]
  # Set up stress divergence kernels
  [./TensorMechanics]
  [../]

  # Cahn-Hilliard kernels
  [./c_res]
    type = CahnHilliard
    variable = c
    f_name = F
    args = 'eta1 eta2 eta3'
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]

  # Allen-Cahn and Lagrange-multiplier constraint kernels for order parameter 1
  [./deta1dt]
    type = TimeDerivative
    variable = eta1
  [../]
  [./ACBulk1]
    type = AllenCahn
    variable = eta1
    args = 'eta2 eta3 c'
    mob_name = L1
    f_name = F
  [../]
  [./ACInterface1]
    type = ACMultiInterface
    variable = eta1
    etas = 'eta1 eta2 eta3'
    mob_name = L1
    kappa_names = 'kappa11 kappa12 kappa13'
  [../]
  [./lagrange1]
    type = SwitchingFunctionConstraintEta
    variable = eta1
    h_name   = h1
    lambda = lambda
  [../]

  # Allen-Cahn and Lagrange-multiplier constraint kernels for order parameter 2
  [./deta2dt]
    type = TimeDerivative
    variable = eta2
  [../]
  [./ACBulk2]
    type = AllenCahn
    variable = eta2
    args = 'eta1 eta3 c'
    mob_name = L2
    f_name = F
  [../]
  [./ACInterface2]
    type = ACMultiInterface
    variable = eta2
    etas = 'eta1 eta2 eta3'
    mob_name = L2
    kappa_names = 'kappa21 kappa22 kappa23'
  [../]
  [./lagrange2]
    type = SwitchingFunctionConstraintEta
    variable = eta2
    h_name   = h2
    lambda = lambda
  [../]

  # Allen-Cahn and Lagrange-multiplier constraint kernels for order parameter 3
  [./deta3dt]
    type = TimeDerivative
    variable = eta3
  [../]
  [./ACBulk3]
    type = AllenCahn
    variable = eta3
    args = 'eta1 eta2 c'
    mob_name = L3
    f_name = F
  [../]
  [./ACInterface3]
    type = ACMultiInterface
    variable = eta3
    etas = 'eta1 eta2 eta3'
    mob_name = L3
    kappa_names = 'kappa31 kappa32 kappa33'
  [../]
  [./lagrange3]
    type = SwitchingFunctionConstraintEta
    variable = eta3
    h_name   = h3
    lambda = lambda
  [../]

  # Lagrange-multiplier constraint kernel for lambda
  [./lagrange]
    type = SwitchingFunctionConstraintLagrange
    variable = lambda
    etas    = 'eta1 eta2 eta3'
    h_names = 'h1   h2   h3'
    epsilon = 1e-6
  [../]
[]

[Materials]
  # declare a few constants, such as mobilities (L,M) and interface gradient prefactors (kappa*)
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'M   kappa_c  L1 L2 L3  kappa11 kappa12 kappa13 kappa21 kappa22 kappa23 kappa31 kappa32 kappa33'
    prop_values = '0.2 0        1  1  1   2.00    2.00    2.00    2.00    2.00    2.00    2.00    2.00    2.00   '
  [../]

  # We use this to output the level of constraint enforcement
  # ideally it should be 0 everywhere, if the constraint is fully enforced
  [./etasummat]
    type = ParsedMaterial
    f_name = etasum
    args = 'eta1 eta2 eta3'
    material_property_names = 'h1 h2 h3'
    function = 'h1+h2+h3-1'
    outputs = exodus
  [../]

  # This parsed material creates a single property for visualization purposes.
  # It will be 0 for phase 1, -1 for phase 2, and 1 for phase 3
  [./phasemap]
    type = ParsedMaterial
    f_name = phase
    args = 'eta2 eta3'
    function = 'if(eta3>0.5,1,0)-if(eta2>0.5,1,0)'
    outputs = exodus
  [../]

  # matrix phase
  [./elasticity_tensor_1]
    type = ComputeElasticityTensor
    base_name = phase1
    C_ijkl = '3 3'
    fill_method = symmetric_isotropic
  [../]
  [./strain_1]
    type = ComputeSmallStrain
    base_name = phase1
    displacements = 'disp_x disp_y'
  [../]
  [./stress_1]
    type = ComputeLinearElasticStress
    base_name = phase1
  [../]

  # oversized phase
  [./elasticity_tensor_2]
    type = ComputeElasticityTensor
    base_name = phase2
    C_ijkl = '7 7'
    fill_method = symmetric_isotropic
  [../]
  [./strain_2]
    type = ComputeSmallStrain
    base_name = phase2
    displacements = 'disp_x disp_y'
    eigenstrain_names = eigenstrain
  [../]
  [./stress_2]
    type = ComputeLinearElasticStress
    base_name = phase2
  [../]
  [./eigenstrain_2]
    type = ComputeEigenstrain
    base_name = phase2
    eigen_base = '0.02'
    eigenstrain_name = eigenstrain
  [../]

  # undersized phase
  [./elasticity_tensor_3]
    type = ComputeElasticityTensor
    base_name = phase3
    C_ijkl = '7 7'
    fill_method = symmetric_isotropic
  [../]
  [./strain_3]
    type = ComputeSmallStrain
    base_name = phase3
    displacements = 'disp_x disp_y'
    eigenstrain_names = eigenstrain
  [../]
  [./stress_3]
    type = ComputeLinearElasticStress
    base_name = phase3
  [../]
  [./eigenstrain_3]
    type = ComputeEigenstrain
    base_name = phase3
    eigen_base = '-0.05'
    eigenstrain_name = eigenstrain
  [../]

  # switching functions
  [./switching1]
    type = SwitchingFunctionMaterial
    function_name = h1
    eta = eta1
    h_order = SIMPLE
  [../]
  [./switching2]
    type = SwitchingFunctionMaterial
    function_name = h2
    eta = eta2
    h_order = SIMPLE
  [../]
  [./switching3]
    type = SwitchingFunctionMaterial
    function_name = h3
    eta = eta3
    h_order = SIMPLE
  [../]

  [./barrier]
    type = MultiBarrierFunctionMaterial
    etas = 'eta1 eta2 eta3'
  [../]

  # chemical free energies
  [./chemical_free_energy_1]
    type = DerivativeParsedMaterial
    f_name = Fc1
    function = '4*c^2'
    args = 'c'
    derivative_order = 2
  [../]
  [./chemical_free_energy_2]
    type = DerivativeParsedMaterial
    f_name = Fc2
    function = '(c-0.9)^2-0.4'
    args = 'c'
    derivative_order = 2
  [../]
  [./chemical_free_energy_3]
    type = DerivativeParsedMaterial
    f_name = Fc3
    function = '(c-0.9)^2-0.5'
    args = 'c'
    derivative_order = 2
  [../]

  # elastic free energies
  [./elastic_free_energy_1]
    type = ElasticEnergyMaterial
    base_name = phase1
    f_name = Fe1
    derivative_order = 2
    args = 'c' # should be empty
  [../]
  [./elastic_free_energy_2]
    type = ElasticEnergyMaterial
    base_name = phase2
    f_name = Fe2
    derivative_order = 2
    args = 'c' # should be empty
  [../]
  [./elastic_free_energy_3]
    type = ElasticEnergyMaterial
    base_name = phase3
    f_name = Fe3
    derivative_order = 2
    args = 'c' # should be empty
  [../]

  # phase free energies (chemical + elastic)
  [./phase_free_energy_1]
    type = DerivativeSumMaterial
    f_name = F1
    sum_materials = 'Fc1 Fe1'
    args = 'c'
    derivative_order = 2
  [../]
  [./phase_free_energy_2]
    type = DerivativeSumMaterial
    f_name = F2
    sum_materials = 'Fc2 Fe2'
    args = 'c'
    derivative_order = 2
  [../]
  [./phase_free_energy_3]
    type = DerivativeSumMaterial
    f_name = F3
    sum_materials = 'Fc3 Fe3'
    args = 'c'
    derivative_order = 2
  [../]

  # global free energy
  [./free_energy]
    type = DerivativeMultiPhaseMaterial
    f_name = F
    fi_names = 'F1  F2  F3'
    hi_names = 'h1  h2  h3'
    etas     = 'eta1 eta2 eta3'
    args = 'c'
    W = 3
  [../]

  # Generate the global stress from the phase stresses
  [./global_stress]
    type = MultiPhaseStressMaterial
    phase_base = 'phase1 phase2 phase3'
    h          = 'h1     h2     h3'
  [../]
[]

[BCs]
  # the boundary conditions on the displacement enforce periodicity
  # at zero total shear and constant volume
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'top'
    value = 0
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'right'
    value = 0
  [../]

  [./Periodic]
    [./disp_x]
      auto_direction = 'y'
    [../]
    [./disp_y]
      auto_direction = 'x'
    [../]

    # all other phase field variables are fully periodic
    [./c]
      auto_direction = 'x y'
    [../]
    [./eta1]
      auto_direction = 'x y'
    [../]
    [./eta2]
      auto_direction = 'x y'
    [../]
    [./eta3]
      auto_direction = 'x y'
    [../]
    [./lambda]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

# We monitor the total free energy and the total solute concentration (should be constant)
[Postprocessors]
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    variable = local_energy
  [../]
  [./total_solute]
    type = ElementIntegralVariablePostprocessor
    variable = c
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm      ilu'

  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10
  start_time = 0.0
  num_steps = 200

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.1
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  [./table]
    type = CSV
    delimiter = ' '
  [../]
[]

[Debug]
  # show_var_residual_norms = true
[]

modules/combined/test/tests/simple_contact/sm/simple_contact_dirac_test_sm.i

# Note: Run merged.i to generate a solution to compare to that doesn't use contact.
# This version of the test uses DiracKernel based contact

[Mesh]
  file = contact.e
  # PETSc < 3.5.0 requires the iteration patch_update_strategy to
  # avoid PenetrationLocator warnings, which are currently treated as
  # errors by the TestHarness.
  patch_update_strategy = 'iteration'
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e5
    formulation = kinematic
    system = DiracKernel
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]

  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    formulation = Nonlinear3D
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    formulation = Nonlinear3D

    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'

  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/solid_mechanics/test/tests/cracking/cracking_rz.i

#
# Simple pull test for cracking.
# The stress increases and then drops to zero.
#
[Mesh]
  file = cracking_rz_test.e
[]

[Problem]
  coord_type = RZ
[]

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

[]

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Functions]
  [./displ]
    type = PiecewiseLinear
    x = '0 1 2 3  4'
    y = '0 1 0 -1 0'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[AuxKernels]

  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    tensor = stress
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    variable = stress_zz
    tensor = stress
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    variable = stress_xy
    tensor = stress
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    variable = stress_yz
    tensor = stress
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    variable = stress_zx
    tensor = stress
    index = 5
  [../]

[]


[BCs]
  [./pull]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = displ
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
[]

[Materials]
  [./fred]
    type = Elastic
    block = 1
    youngs_modulus = 4.0e7 #2.8e7
    poissons_ratio = 0.0 #.3
    cracking_stress = 1.68e6

    disp_r = disp_x
    disp_z = disp_y
  [../]

[]

[Executioner]
  type = Transient

  solve_type = PJFNK


  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101               '


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-2
  l_tol = 1e-5
  start_time = 0.0
  end_time = 0.1
  dt = 0.025
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/interfacekernels/2d_interface/coupled_value_coupled_flux_dot.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    xmax = 2
    ny = 2
    ymax = 2
  []
  [./subdomain1]
    input = gen
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0 0 0'
    top_right = '1 1 0'
    block_id = 1
  [../]
  [./interface]
    type = SideSetsBetweenSubdomainsGenerator
    input = subdomain1
    master_block = '0'
    paired_block = '1'
    new_boundary = 'master0_interface'
  [../]
  [./break_boundary]
    input = interface
    type = BreakBoundaryOnSubdomainGenerator
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    block = 0
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
    block = 1
  [../]
[]

[Kernels]
  [./diff_u]
    type = CoeffParamDiffusion
    variable = u
    D = 2
    block = 0
  [../]
  [./diff_v]
    type = CoeffParamDiffusion
    variable = v
    D = 4
    block = 1
  [../]
  [./source_u]
    type = BodyForce
    variable = u
    function = 0.1*t
  [../]
[]

[InterfaceKernels]
  [./interface]
    type = PenaltyInterfaceDiffusionDot
    variable = u
    neighbor_var = v
    boundary = master0_interface
    penalty = 1e6
  [../]
[]

[BCs]
  [./u]
    type = VacuumBC
    variable = u
    boundary = 'left_to_0 bottom_to_0 right top'
  [../]
  [./v]
    type = VacuumBC
    variable = v
    boundary = 'left_to_1 bottom_to_1'
  [../]
[]

[Postprocessors]
  [./u_int]
    type = ElementIntegralVariablePostprocessor
    variable = u
    block = 0
  [../]
  [./v_int]
    type = ElementIntegralVariablePostprocessor
    variable = v
    block = 1
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = TRUE
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = ' lu       superlu_dist                '
  dt = 0.1
  num_steps = 10
  dtmin = 0.1
  line_search = none
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
[]

test/tests/multiapps/centroid_multiapp/centroid_multiapp.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./x]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./y]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./x]
    type = FunctionIC
    function = x
    variable = x
  [../]
  [./y]
    type = FunctionIC
    function = y
    variable = y
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 'left'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  solve_type = PJFNK
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [sub]
    type = CentroidMultiApp
    input_files = 'sub_app.i'
    output_in_position = true
  []
[]

[Transfers]
  [./incoming_x]
    type = MultiAppVariableValueSamplePostprocessorTransfer
    source_variable = x
    direction = to_multiapp
    multi_app = sub
    postprocessor = incoming_x
  [../]
  [./incoming_y]
    type = MultiAppVariableValueSamplePostprocessorTransfer
    source_variable = y
    direction = to_multiapp
    multi_app = sub
    postprocessor = incoming_y
  [../]
[]

modules/richards/test/tests/sinks/q2p01.i

# Q2PPiecewiseLinearSink (and the Flux Postprocessor)
# There are three sinks: water with no relperm and density;
# water with relperm and density; gas with relperm and density.
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
[]



[UserObjects]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = Q2PRelPermPowerGas
    simm = 0.0
    n = 3
  [../]
[]

[Variables]
  [./pp]
    [./InitialCondition]
      type = FunctionIC
      function = 1
    [../]
  [../]
  [./sat]
    [./InitialCondition]
      type = FunctionIC
      function = 0.5
    [../]
  [../]
[]

[Q2P]
  porepressure = pp
  saturation = sat
  water_density = DensityWater
  water_relperm = RelPermWater
  water_viscosity = 0.8
  gas_density = DensityGas
  gas_relperm = RelPermGas
  gas_viscosity = 0.5
  diffusivity = 0.0
  output_total_masses_to = 'CSV'
  save_gas_flux_in_Q2PGasFluxResidual = true
  save_water_flux_in_Q2PWaterFluxResidual = true
  save_gas_Jacobian_in_Q2PGasJacobian = true
  save_water_Jacobian_in_Q2PWaterJacobian = true
[]

[Postprocessors]
  [./left_water_out]
    type = Q2PPiecewiseLinearSinkFlux
    boundary = left
    porepressure = pp
    pressures = '0 1'
    bare_fluxes = '0 1.5'
    multiplying_fcn = 0.1
    execute_on = 'initial timestep_end'
  [../]
  [./right_water_out]
    type = Q2PPiecewiseLinearSinkFlux
    boundary = right
    porepressure = pp
    pressures = '0 1'
    bare_fluxes = '1 2'
    fluid_density = DensityWater
    fluid_viscosity = 0.8
    fluid_relperm = RelPermWater
    saturation = sat
    execute_on = 'initial timestep_end'
  [../]
  [./right_gas_out]
    type = Q2PPiecewiseLinearSinkFlux
    boundary = right
    porepressure = pp
    pressures = '0 1'
    bare_fluxes = '1 1'
    fluid_density = DensityGas
    fluid_viscosity = 0.5
    fluid_relperm = RelPermGas
    saturation = sat
    execute_on = 'initial timestep_end'
  [../]
  [./p_left]
    type = PointValue
    point = '0 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./sat_left]
    type = PointValue
    point = '0 0 0'
    variable = sat
    execute_on = 'initial timestep_end'
  [../]
  [./p_right]
    type = PointValue
    point = '1 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./sat_right]
    type = PointValue
    point = '1 0 0'
    variable = sat
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./left_water]
    type = Q2PPiecewiseLinearSink
    boundary = left
    pressures = '0 1'
    bare_fluxes = '0 1.5'
    multiplying_fcn = 0.1
    variable = sat
    other_var = pp
    var_is_porepressure = false
    use_mobility = false
    use_relperm = false
    fluid_density = DensityWater
    fluid_viscosity = 0.8
    fluid_relperm = RelPermWater
  [../]
  [./right_water]
    type = Q2PPiecewiseLinearSink
    boundary = right
    pressures = '0 1'
    bare_fluxes = '1 2'
    variable = sat
    other_var = pp
    var_is_porepressure = false
    use_mobility = true
    use_relperm = true
    fluid_density = DensityWater
    fluid_viscosity = 0.8
    fluid_relperm = RelPermWater
  [../]
  [./right_gas]
    type = Q2PPiecewiseLinearSink
    boundary = right
    pressures = '0 1'
    bare_fluxes = '1 1'
    variable = pp
    other_var = sat
    var_is_porepressure = true
    use_mobility = true
    use_relperm = true
    fluid_density = DensityGas
    fluid_viscosity = 0.5
    fluid_relperm = RelPermGas
  [../]
[]

[AuxVariables]
  [./one]
    initial_condition = 1
  [../]
[]

[Materials]
  [./rock]
    type = Q2PMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-2 0 0  0 1E-2 0  0 0 1E-2'
    gravity = '0 0 0'
  [../]
[]


[Preconditioning]
  active = 'andy'
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.5
[]

[Outputs]
  file_base = q2p01
  exodus = true
  [./CSV]
    type = CSV
  [../]
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_MD.i

# Pressure pulse in 1D with 1 phase - transient
# Using the "MD" formulation (where primary variable is log(mass-density
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./md]
    # initial porepressure = 2E6
    # so initial md = log(density_P0) + porepressure/bulk_modulus =
    initial_condition = 6.90875527898214
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = md
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = md
    gravity = '0 0 0'
    fluid_component = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'md'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseMD_Gaussian
    mass_density = md
    al = 1E-6 # this is irrelevant in this example
    density_P0 = 1000
    bulk_modulus = 2E9
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    # BC porepressure = 3E6
    # so boundary md = log(density_P0) + porepressure/bulk_modulus =
    value = 6.90925527898214
    variable = md
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[AuxVariables]
  [./pp]
  [../]
[]

[AuxKernels]
  [./pp]
    type = ParsedAux
    function = '(md-6.9077552789821)*2.0E9'
    args = 'md'
    variable = pp
  [../]
[]


[Postprocessors]
  [./p000]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p010]
    type = PointValue
    variable = pp
    point = '10 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p020]
    type = PointValue
    variable = pp
    point = '20 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p030]
    type = PointValue
    variable = pp
    point = '30 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p040]
    type = PointValue
    variable = pp
    point = '40 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p050]
    type = PointValue
    variable = pp
    point = '50 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p060]
    type = PointValue
    variable = pp
    point = '60 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p070]
    type = PointValue
    variable = pp
    point = '70 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p080]
    type = PointValue
    variable = pp
    point = '80 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p090]
    type = PointValue
    variable = pp
    point = '90 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p100]
    type = PointValue
    variable = pp
    point = '100 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  file_base = pressure_pulse_1d_MD
  print_linear_residuals = false
  csv = true
[]

modules/xfem/test/tests/solid_mechanics_basic/test_crack_counter.i

# This test is used to verify that the pure test object (TestCrackCounter)
# is correctly using the API for extracting the crack_tip_origin_direction_map
# from XFEM.  The map contains information of the location of all the crack tips
# computed by XFEM.  The TestCrackCounter postprocessor simply returns the
# number of elements in the map which corresponds to the number of cracks.
#
# In this test case 4 prescribed cracks are applied.  Therefore, the
# TestCrackCounter postprocessor returns a value of 4.

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 11
  ny = 11
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '1.0  0.5  0.7  0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./line_seg_cut_uo2]
    type = LineSegmentCutUserObject
    cut_data = '0.0  0.5  0.3  0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./line_seg_cut_uo3]
    type = LineSegmentCutUserObject
    cut_data = '0.5  0.0  0.5  0.3'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./line_seg_cut_uo4]
    type = LineSegmentCutUserObject
    cut_data = '0.5  1.0  0.5  0.7'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    planar_formulation = plane_strain
    add_variables = true
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0  50   100'
    y='0  0.02 0.1'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./topx]
    type = DirichletBC
    boundary = top
    variable = disp_x
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_y
    function = pull
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = 0
  [../]

  [./_elastic_strain]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]

[Postprocessors]
  [./number_of_cracks]
    type = TestCrackCounter
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-9

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
  num_steps = 5000

  max_xfem_update = 1
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/heat_mass_transfer/variable_transfer_0D.i


[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[Variables]
  [./u]
    initial_condition = 1
  [../]
[]

[AuxVariables]
  [./v]
    initial_condition = 10
  [../]
[]

[Kernels]
  [./u_dot]
    type = TimeDerivative
    variable = u
  [../]
  [./value_transfer]
    type = PorousFlowHeatMassTransfer
    variable = u
    v = v
    transfer_coefficient = 1e-1
  [../]
[]

[Postprocessors]
  [./point_value]
    type = PointValue
    variable = u
    point = '0.5 0.5 0.'
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  num_steps = 11
  dt = 1
[]


[Outputs]
  csv = true
[]

modules/richards/test/tests/darcy/pp.i

# investigating pressure pulse in 1D
# transient

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  variable = pressure
  fluid_weight = '0 0 0'
  fluid_viscosity = 1E-3
[]


[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = 2E6
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
  [../]
[]

[Kernels]
  [./time_deriv]
    type = TimeDerivative
  [../]
  [./darcy]
    type = DarcyFlux
  [../]
[]

[AuxVariables]
  [./f_0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_0]
    type = DarcyFluxComponent
    component = x
    variable = f_0
    porepressure = pressure
  [../]
[]

[Materials]
  [./solid]
    type = DarcyMaterial
    block = 0
    mat_permeability = '2E-5 0 0  0 2E-5 0  0 0 2E-5' # this is the permeability (1E-15) multiplied by the bulk modulus (2E9) divided by the porosity (0.1)
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options_iname = '-ksp_type -pc_type'
  petsc_options_value = 'bcgs bjacobi'
  dt = 1E3
  end_time = 1E4
[]

[Outputs]
  file_base = pp
  execute_on = 'timestep_end final'
  interval = 10000
  exodus = true
[]

modules/tensor_mechanics/test/tests/thermal_expansion_function/small_const.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function has a constant value,
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# This version of the test uses small deformation theory.  The results
# from the two models are identical.

[Mesh]
  file = 'blocks.e'
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeLinearElasticStress
  [../]
  [./thermal_expansion_strain1]
    type = ComputeMeanThermalExpansionFunctionEigenstrain
    block = 1
    thermal_expansion_function = cte_func_mean
    thermal_expansion_function_reference_temperature = 0.5
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
  [./thermal_expansion_strain2]
    type = ComputeInstantaneousThermalExpansionFunctionEigenstrain
    block = 2
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (t - tsf) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 1.0
               2 1.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

modules/phase_field/test/tests/KKS_system/kks_example_split.i

#
# KKS toy problem in the split form
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  nz = 0
  xmin = -2.5
  xmax = 2.5
  ymin = -2.5
  ymax = 2.5
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[AuxVariables]
  [./Fglobal]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Variables]
  # order parameter
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]

  # hydrogen concentration
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]

  # chemical potential
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]

  # hydrogen phase concentration (matrix)
  [./cm]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
  # hydrogen phase concentration (delta phase)
  [./cd]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[ICs]
  [./eta]
    variable = eta
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 1.5
    invalue = 0.2
    outvalue = 0.1
    int_width = 0.75
  [../]
  [./c]
    variable = c
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 1.5
    invalue = 0.6
    outvalue = 0.4
    int_width = 0.75
  [../]
[]


[BCs]
  [./Periodic]
    [./all]
      variable = 'eta w c cm cd'
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  # Free energy of the matrix
  [./fm]
    type = DerivativeParsedMaterial
    f_name = fm
    args = 'cm'
    function = '(0.1-cm)^2'
  [../]

  # Free energy of the delta phase
  [./fd]
    type = DerivativeParsedMaterial
    f_name = fd
    args = 'cd'
    function = '(0.9-cd)^2'
  [../]

  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'M   L   kappa'
    prop_values = '0.7 0.7 0.4  '
  [../]
[]

[Kernels]
  # full transient
  active = 'PhaseConc ChemPotVacancies CHBulk ACBulkF ACBulkC ACInterface dcdt detadt ckernel'

  # enforce c = (1-h(eta))*cm + h(eta)*cd
  [./PhaseConc]
    type = KKSPhaseConcentration
    ca       = cm
    variable = cd
    c        = c
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotVacancies]
    type = KKSPhaseChemicalPotential
    variable = cm
    cb       = cd
    fa_name  = fm
    fb_name  = fd
  [../]

  #
  # Cahn-Hilliard Equation
  #
  [./CHBulk]
    type = KKSSplitCHCRes
    variable = c
    ca       = cm
    fa_name  = fm
    w        = w
  [../]

  [./dcdt]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./ckernel]
    type = SplitCHWRes
    mob_name = M
    variable = w
  [../]

  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = fm
    fb_name  = fd
    args     = 'cm cd'
    w        = 0.4
  [../]
  [./ACBulkC]
    type = KKSACBulkC
    variable = eta
    ca       = cm
    cb       = cd
    fa_name  = fm
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = kappa
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[AuxKernels]
  [./GlobalFreeEnergy]
    variable = Fglobal
    type = KKSGlobalFreeEnergy
    fa_name = fm
    fb_name = fd
    w = 0.4
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pctype -sub_pc_type -sub_pc_factor_shift_type -pc_factor_shift_type'
  petsc_options_value = ' asm    lu          nonzero                    nonzero'

  l_max_its = 100
  nl_max_its = 100
  num_steps = 3

  dt = 0.1
[]

#
# Precondition using handcoded off-diagonal terms
#
[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]


[Outputs]
  file_base = kks_example_split
  exodus = true
[]

test/tests/dampers/bounding_value_nodal_damper/bounding_value_max_test.i

# This model tests the BoundingValueNodalDamper. The converged solution
# for u starts out in the range from 0 to 1, but after several steps,
# a volumetric source drives it to a value greater than 1, which is
# outside the range of the damper. At that point, the solution can
# no longer converge, and the model errors out with a failure to converge.
# The test verifies that the damper computes the correct value in the first
# nonlinear iteration when the solution exceeds the bounds.

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./source]
    type = BodyForce
    variable = u
    function = 't'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Dampers]
  [./bounding_value_damp]
    type = BoundingValueNodalDamper
    min_value = 0.0
    max_value = 1.0
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  end_time = 3.0
  dt = 0.5
  dtmin = 0.5
  nl_max_its = 5
[]

modules/tensor_mechanics/test/tests/accumulate_aux/accumulate_aux.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = square.e
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./node_accum]
  [../]
  [./elem_accum]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = v
  [../]
[]

[AuxKernels]
  [./na]
    type = AccumulateAux
    variable = node_accum
    accumulate_from_variable = v
    execute_on = timestep_end
  [../]
  [./ea]
    type = AccumulateAux
    variable = elem_accum
    accumulate_from_variable = v
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = v
    boundary = 3
    value = 2
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
[]

[Outputs]
  file_base = accumulate_aux_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_rayleigh_hht_ti.i

# Test for damped small strain euler beam vibration in y direction

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 1e4
# Shear modulus (G) = 4e7
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 0.01
# Iy = 1e-4 = Iz
# Length (L)= 4 m
# density (rho) = 1.0
# mass proportional rayleigh damping(eta) = 0.1
# stiffness proportional rayleigh damping(eta) = 0.1
# HHT time integration parameter (alpha) = -0.3
# Corresponding Newmark beta time integration parameters beta = 0.4225 and gamma = 0.8

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 6.4e6
# Therefore, the behaves like a Euler-Bernoulli beam.

# The displacement time history from this analysis matches with that obtained from Abaqus.

# Values from the first few time steps are as follows:
# time  disp_y                vel_y                accel_y
# 0.0   0.0                   0.0                  0.0
# 0.2   0.019898364318588     0.18838688112273     1.1774180070171
# 0.4   0.045577003505278     0.087329917525455   -0.92596052423724
# 0.6   0.063767907208218     0.084330765885995    0.21274543331268
# 0.8   0.073602908614573     0.020029576220975   -0.45506879373455
# 1.0   0.06841704414745     -0.071840076837194   -0.46041813317992

[Mesh]
  type = GeneratedMesh
  nx = 10
  dim = 1
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./accel_x] # These auxkernels are only to check output
    type = TestNewmarkTI
    displacement = disp_x
    variable = accel_x
    first = false
  [../]
  [./accel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = accel_y
    first = false
  [../]
  [./accel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = accel_z
    first = false
  [../]
  [./vel_x]
    type = TestNewmarkTI
    displacement = disp_x
    variable = vel_x
  [../]
  [./vel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = vel_y
  [../]
  [./vel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = vel_z
  [../]
  [./rot_accel_x]
    type = TestNewmarkTI
    displacement = rot_x
    variable = rot_accel_x
    first = false
  [../]
  [./rot_accel_y]
    type = TestNewmarkTI
    displacement = rot_y
    variable = rot_accel_y
    first = false
  [../]
  [./rot_accel_z]
    type = TestNewmarkTI
    displacement = rot_z
    variable = rot_accel_z
    first = false
  [../]
  [./rot_vel_x]
    type = TestNewmarkTI
    displacement = rot_x
    variable = rot_vel_x
  [../]
  [./rot_vel_y]
    type = TestNewmarkTI
    displacement = rot_y
    variable = rot_vel_y
  [../]
  [./rot_vel_z]
    type = TestNewmarkTI
    displacement = rot_z
    variable = rot_vel_z
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.2 0.4 10.0'
    y = '0.0 0.01  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  l_tol = 1e-11
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10
  start_time = 0.0
  dt = 0.2
  end_time = 5.0
  timestep_tolerance = 1e-6

  # Time integrator
  [./TimeIntegrator]
    type = NewmarkBeta
    beta = 0.4225
    gamma = 0.8
  [../]
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
    zeta = 0.1
    alpha = -0.3
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
    zeta = 0.1
    alpha = -0.3
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
    zeta = 0.1
    alpha = -0.3
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
    zeta = 0.1
    alpha = -0.3
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
    zeta = 0.1
    alpha = -0.3
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
    zeta = 0.1
    alpha = -0.3
  [../]
  [./inertial_force_x]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 0
    variable = disp_x
    alpha = -0.3
  [../]
  [./inertial_force_y]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 1
    variable = disp_y
    alpha = -0.3
  [../]
  [./inertial_force_z]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 2
    variable = disp_z
    alpha = -0.3
  [../]
  [./inertial_force_rot_x]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 3
    variable = rot_x
    alpha = -0.3
  [../]
  [./inertial_force_rot_y]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 4
    variable = rot_y
    alpha = -0.3
  [../]
  [./inertial_force_rot_z]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 5
    variable = rot_z
    alpha = -0.3
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e4
    poissons_ratio = -0.999875
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.01
    Ay = 0.0
    Az = 0.0
    Iy = 1.0e-4
    Iz = 1.0e-4
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1.0'
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  file_base = 'dyn_euler_small_rayleigh_hht_out'
  exodus = true
  csv = true
  perf_graph = true
[]

modules/combined/test/tests/contact_verification/patch_tests/single_pnt_2d/single_point_2d.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = single_point_2d.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./appl_disp]
    type = PiecewiseLinear
    x = '0 0.001  0.101'
    y = '0 0.0   -0.10'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./incslip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./incslip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = appl_disp
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = -0.002001
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e9
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputePlaneFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputePlaneFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./disp_x]
    type = NodalVariableValue
    nodeid = 5
    variable = disp_x
  [../]
  [./disp_y]
    type = NodalVariableValue
    nodeid = 5
    variable = disp_y
  [../]
  [./inc_slip_x]
    type = NodalVariableValue
    nodeid = 5
    variable = inc_slip_x
  [../]
  [./inc_slip_y]
    type = NodalVariableValue
    nodeid = 5
    variable = inc_slip_y
  [../]
  [./accum_slip_x]
    type = NodalVariableValue
    nodeid = 5
    variable = accum_slip_x
  [../]
  [./accum_slip_y]
    type = NodalVariableValue
    nodeid = 5
    variable = accum_slip_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package -mat_superlu_dist_iterrefine'
  petsc_options_value = 'lu    superlu_dist 1'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 200
  dt = 0.001
  end_time = 0.001
  num_steps = 10000
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-8
  dtmin = 0.001
  l_tol = 1e-3
[]

[Outputs]
  file_base = single_point_2d_out_glued_kin
  exodus = true
  print_linear_residuals = true
  perf_graph = true
  csv = true
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = glued
    system = constraint
    formulation = kinematic
    penalty = 1e12
    normalize_penalty = true
    tangential_tolerance = 1e-3
  [../]
[]

modules/porous_flow/test/tests/jacobian/fflux05.i

# 1phase with MD_Gaussian (var = log(mass-density) with Gaussian capillary) formulation
# constant viscosity, constant insitu permeability
# density with constant bulk, Corey relative perm, nonzero gravity
# fully saturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./md]
  [../]
[]

[ICs]
  [./md]
    type = RandomIC
    min = 0
    max = 1 # unsaturated for md<log(density_P0=0.8)=-0.223
    variable = md
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = md
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'md'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseMD_Gaussian
    mass_density = md
    al = 1.1
    density_P0 = 0.8
    bulk_modulus = 1.5
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/materials/derivative_material_interface/construction_order.i

#
# Test the the getDefaultMaterialProperty in DerivativeMaterialInterface.
# This test should only pass, if the construction order of the Materials
# using this interface does not influence the outcome.
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 0.1
  elem_type = QUAD4
[]

[GlobalParams]
  derivative_order = 2
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = x
    [../]
  [../]
[]

[Kernels]
  [./dummy1]
    type = Diffusion
    variable = c
  [../]
  [./dummy2]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  # derivatives used both before and after being declared
  [./sum_a_1]
    type = DerivativeSumMaterial
    f_name = Fa1
    sum_materials = 'Fa'
    args = 'c'
    outputs = exodus
  [../]
  [./free_energy_a]
    type = DerivativeParsedMaterial
    f_name = Fa
    args = 'c'
    function = 'c^4'
  [../]
  [./sum_a_2]
    type = DerivativeSumMaterial
    f_name = Fa2
    sum_materials = 'Fa'
    args = 'c'
    outputs = exodus
  [../]

  # derivatives declared after being used
  [./sum_b_1]
    type = DerivativeSumMaterial
    f_name = Fb1
    sum_materials = 'Fb'
    args = 'c'
    outputs = exodus
  [../]
  [./free_energy_b]
    type = DerivativeParsedMaterial
    f_name = Fb
    args = 'c'
    function = 'c^4'
  [../]

  # derivatives declared before being used
  [./free_energy_c]
    type = DerivativeParsedMaterial
    f_name = Fc
    args = 'c'
    function = 'c^4'
  [../]
  [./sum_c_2]
    type = DerivativeSumMaterial
    f_name = Fc2
    sum_materials = 'Fc'
    args = 'c'
    outputs = exodus
  [../]

  # non-existing derivatives
  [./free_energy_d]
    type = ParsedMaterial
    f_name = Fd
    args = 'c'
    function = 'c^4'
  [../]
  [./sum_d_1]
    type = DerivativeSumMaterial
    f_name = Fd1
    sum_materials = 'Fd'
    args = 'c'
    outputs = exodus
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = 'NEWTON'
  num_steps = 1
  dt = 1e-5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/phase_field/test/tests/Nucleation/data.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  nz = 0
  xmin = 0
  xmax = 20
  ymin = 0
  ymax = 20
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[UserObjects]
  [./inserter]
    type = DiscreteNucleationInserter
    hold_time = 0.5
    probability = 0.0076
  [../]
[]

[Postprocessors]
  [./nuc_count]
    type = DiscreteNucleationData
    inserter = inserter
    value = COUNT
  [../]
  [./nuc_update]
    type = DiscreteNucleationData
    inserter = inserter
    value = UPDATE
  [../]
  [./nuc_rate]
    type = DiscreteNucleationData
    inserter = inserter
    value = RATE
  [../]
  [./nuc_insertions]
    type = DiscreteNucleationData
    inserter = inserter
    value = INSERTIONS
  [../]
  [./nuc_deletions]
    type = DiscreteNucleationData
    inserter = inserter
    value = DELETIONS
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.55
[]

[Problem]
  kernel_coverage_check = false
  solve = false
[]

[Outputs]
  execute_on = 'timestep_end'
  csv = true
[]

modules/tensor_mechanics/test/tests/tensile/small_deform9_update_version.i

# A single unit element is stretched in a complicated way
# that the trial stress is
#
#      1.16226      -0.0116587       0.0587872
#     -0.0116587         1.12695       0.0779428
#      0.0587872       0.0779428        0.710169
#
# This has eigenvalues
# la = {0.68849, 1.14101, 1.16987}
# and eigenvectors
#
# {-0.125484, -0.176871, 0.976202}
# {-0.0343704, -0.982614, -0.182451}
# {0.9915, -0.0564471, 0.117223}
#
# The tensile strength is 0.5 and Young=1 and Poisson=0.25.
# Using smoothing_tol=0.01, the return-map algorithm should
# return to, approximately, stress_I=stress_II=0.5.  This
# is a reduction of 0.65, so stress_III is approximately
# 0.68849 - 0.25 * 0.65 * 2 = 0.36.  The stress_I reduction of
# 0.67 gives an internal parameter of
# 0.67 / (E(1-v)/(1+v)/(1-2v)) = 0.558
# The final stress is
#
# {0.498, -0.003, 0.017},
# {-0.003, 0.495, 0.024},
# {0.017, 0.024,  0.367}

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '3*x+2*y+z'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '3*x-4*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = 'x-2*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.25
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.001
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform9_update_version
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/userobjects/shape_element_user_object/jacobian.i

[GlobalParams]
  use_displaced_mesh = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = (x-0.5)^2
    [../]
  [../]
  [./v]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = (x-0.5)^2
    [../]
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./shape_w]
    type = ExampleShapeElementKernel
    user_object = example_uo
    v = v
    variable = u
  [../]
  [./time_u]
    type = TimeDerivative
    variable = u
  [../]
  [./time_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[UserObjects]
  [./example_uo]
    type = ExampleShapeElementUserObject
    u = u
    v = v
    # as this userobject computes quantities for both the residual AND the jacobian
    # it needs to have these execute_on flags set.
    execute_on = 'linear nonlinear'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    #full = true
    off_diag_row =    'u'
    off_diag_column = 'v'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options = '-snes_test_display'
  petsc_options_iname = '-snes_type'
  petsc_options_value = 'test'
  dt = 0.1
  num_steps = 2
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/combined/test/tests/gap_heat_transfer_htonly/gap_heat_transfer_htonly_rspherical.i

#
# 1-D spherical Gap Heat Transfer Test
#
# This test exercises 1-D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of two "blocks" with a mesh biased toward the gap
#   between them.  Each block is unit length.  The gap between them is one
#   unit in length.
#
# The conductivity of both blocks is set very large to achieve a uniform temperature
#  across each block. The temperature of the far left boundary
#  is ramped from 100 to 200 over one time unit, and then held fixed for an additional
#  time unit.  The temperature of the far right boundary is held fixed at 100.
#
# A simple analytical solution is possible for the heat flux between the blocks, or spheres in the case of RSPHERICAL.:
#
#  Flux = (T_left - T_right) * (gapK/(r^2*((1/r1)-(1/r2))))
#
# For gapK = 1 (default value)
#
# The area is taken as the area of the slave (inner) surface:
#
# Area = 4 * pi * 1 * 1
#
# The integrated heat flux across the gap at time 2 is then:
#
# 4*pi*k*delta_T/((1/r1)-(1/r2))
# 4*pi*1*100/((1/1) - (1/2)) =  2513.3 watts
#
# For comparison, see results from the flux post processors.
#
#

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]
  file = gap_heat_transfer_htonly_rspherical.e
  construct_side_list_from_node_list = true
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '100 200 200'
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_cond]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]


[BCs]
  [./temp_far_left]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]

  [./temp_far_right]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[AuxKernels]
  [./conductance]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_cond
    boundary = 2
  [../]
[]

[Materials]
  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 1e6
  [../]
  [./density]
    type = Density
    block = '1 2'
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  # I don't know enough about this test to say why it needs such a
  # loose nl_abs_tol... after timestep 10 the residual basically can't
  # be reduced much beyond the initial residual.  The test probably
  # needs to be revisited to determine why.
  nl_abs_tol = 1e-3
  nl_rel_tol = 1e-10
  l_tol = 1e-6
  l_max_its = 100
  line_search = 'none'
  nl_max_its = 10

  dt = 1e-1
  dtmin = 1e-1
  end_time = 2.0
[]

[Postprocessors]

  [./temp_left]
    type = SideAverageValue
    boundary = 2
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./temp_right]
    type = SideAverageValue
    boundary = 3
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./flux_left]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
  [../]

  [./flux_right]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
  [../]
[]


[Outputs]
  exodus = true
[]

modules/tensor_mechanics/examples/coal_mining/fine.i

# Strata deformation and fracturing around a coal mine - 3D model
#
# A "half model" is used.  The mine is 400m deep and
# just the roof is studied (-400<=z<=0).  The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long.  The outer boundaries
# are 1km from the excavation boundaries.
#
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions for this simulation are:
#  - disp_x = 0 at x=0 and x=1150
#  - disp_y = 0 at y=-1000 and y=1000
#  - disp_z = 0 at z=-400, but there is a time-dependent
#               Young's modulus that simulates excavation
#  - wc_x = 0 at y=-1000 and y=1000
#  - wc_y = 0 at x=0 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa.  The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = 0.025*z MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg.  The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 3 MPa
# MC friction angle = 37 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
#
[Mesh]
  [file]
    type = FileMeshGenerator
    file = mesh/fine.e
  []
  [./xmin]
    input = file
    type = SideSetsAroundSubdomainGenerator
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    new_boundary = xmin
    normal = '-1 0 0'
  [../]
  [./xmax]
    input = xmin
    type = SideSetsAroundSubdomainGenerator
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    new_boundary = xmax
    normal = '1 0 0'
  [../]
  [./ymin]
    input = xmax
    type = SideSetsAroundSubdomainGenerator
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    new_boundary = ymin
    normal = '0 -1 0'
  [../]
  [./ymax]
    input = ymin
    type = SideSetsAroundSubdomainGenerator
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    new_boundary = ymax
    normal = '0 1 0'
  [../]
  [./zmax]
    input = ymax
    type = SideSetsAroundSubdomainGenerator
    block = 30
    new_boundary = zmax
    normal = '0 0 1'
  [../]
  [./zmin]
    input = zmax
    type = SideSetsAroundSubdomainGenerator
    block = 2
    new_boundary = zmin
    normal = '0 0 -1'
  [../]
  [./excav]
    type = SubdomainBoundingBoxGenerator
    input = zmin
    block_id = 1
    bottom_left = '0 0 -400'
    top_right = '150 1000 -397'
  [../]
  [./roof]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    input = excav
    new_boundary = roof
    normal = '0 0 1'
  [../]
[]

[GlobalParams]
  perform_finite_strain_rotations = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_y
    component = 1
  [../]
  [./gravity]
    type = Gravity
    use_displaced_mesh = false
    variable = disp_z
    value = -10E-6 # remember this is in MPa
  [../]
[]


[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_shear]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_internal_parameter
    variable = mc_shear
  [../]
  [./mc_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = mc_plastic_internal_parameter
    variable = mc_tensile
  [../]
  [./wp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_internal_parameter
    variable = wp_shear
  [../]
  [./wp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_internal_parameter
    variable = wp_tensile
  [../]
  [./mc_shear_f]
    type = MaterialStdVectorAux
    index = 6
    property = mc_plastic_yield_function
    variable = mc_shear_f
  [../]
  [./mc_tensile_f]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_yield_function
    variable = mc_tensile_f
  [../]
  [./wp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_yield_function
    variable = wp_shear_f
  [../]
  [./wp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_yield_function
    variable = wp_tensile_f
  [../]
[]



[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'xmin xmax'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'ymin ymax'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = zmin
    value = 0.0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = 'ymin ymax'
    value = 0.0
  [../]
  [./no_wc_y]
    type = DirichletBC
    variable = wc_y
    boundary = 'xmin xmax'
    value = 0.0
  [../]
  [./roof]
    type = StickyBC
    variable = disp_z
    min_value = -3.0
    boundary = roof
  [../]
[]

[Functions]
  [./ini_xx]
    type = ParsedFunction
    value = '0.8*2500*10E-6*z'
  [../]
  [./ini_zz]
    type = ParsedFunction
    value = '2500*10E-6*z'
  [../]
  [./excav_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval slope'
    vals = '100.0   0    1000.0 1E-9 1 10'
    # excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
    # slope is the distance over which the modulus reduces from maxval to minval
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
  [../]
  [./density_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval'
    vals = '100.0   0    1000.0 0 2500'
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
  [../]
[]

[UserObjects]
  [./mc_coh_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 2.99 # MPa
    value_residual = 3.01 # MPa
    rate = 1.0
  [../]
  [./mc_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.65 # 37deg
  [../]
  [./mc_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.15 # 8deg
  [../]

  [./mc_tensile_str_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0 # MPa
    value_residual = 1.0 # MPa
    rate = 1.0
  [../]
  [./mc_compressive_str]
    type = TensorMechanicsHardeningCubic
    value_0 = 100 # Large!
    value_residual = 100
    internal_limit = 0.1
  [../]

  [./wp_coh_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_tan_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.36 # 20deg
  [../]
  [./wp_tan_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.18 # 10deg
  [../]

  [./wp_tensile_str_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_compressive_str_soften]
    type = TensorMechanicsHardeningCubic
    value_0 = 100
    value_residual = 1
    internal_limit = 1.0
  [../]
[]

[Materials]
  [./elasticity_tensor_0]
    type = ComputeLayeredCosseratElasticityTensor
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
  [../]
  [./elasticity_tensor_1]
    type = ComputeLayeredCosseratElasticityTensor
    block = 1
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
    elasticity_tensor_prefactor = excav_sideways
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    eigenstrain_name = ini_stress
    initial_stress = 'ini_xx 0 0  0 ini_xx 0  0 0 ini_zz'
  [../]

  [./stress_0]
    type = ComputeMultipleInelasticCosseratStress
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    inelastic_models = 'mc wp'
    cycle_models = true
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./stress_1]
    type = ComputeMultipleInelasticCosseratStress
    block = 1
    inelastic_models = ''
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedMohrCoulombCosseratStressUpdate
    warn_about_precision_loss = false
    host_youngs_modulus = 8E3
    host_poissons_ratio = 0.25
    base_name = mc
    tensile_strength = mc_tensile_str_strong_harden
    compressive_strength = mc_compressive_str
    cohesion = mc_coh_strong_harden
    friction_angle = mc_fric
    dilation_angle = mc_dil
    max_NR_iterations = 100000
    smoothing_tol = 0.1 # MPa  # Must be linked to cohesion
    yield_function_tol = 1E-9 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    warn_about_precision_loss = false
    base_name = wp
    cohesion = wp_coh_harden
    tan_friction_angle = wp_tan_fric
    tan_dilation_angle = wp_tan_dil
    tensile_strength = wp_tensile_str_harden
    compressive_strength = wp_compressive_str_soften
    max_NR_iterations = 10000
    tip_smoother = 0.1
    smoothing_tol = 0.1 # MPa  # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0E-3
  [../]


  [./density_0]
    type = GenericConstantMaterial
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    prop_names = density
    prop_values = 2500
  [../]
  [./density_1]
    type = GenericFunctionMaterial
    block = 1
    prop_names = density
    prop_values = density_sideways
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Postprocessors]
  [./min_roof_disp]
    type = NodalExtremeValue
    boundary = roof
    value_type = min
    variable = disp_z
  [../]
  [./min_surface_disp]
    type = NodalExtremeValue
    boundary = zmax
    value_type = min
    variable = disp_z
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options = '-snes_converged_reason'
  petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' bjacobi  gmres     200'

  line_search = bt

  nl_abs_tol = 1e-3
  nl_rel_tol = 1e-5

  l_max_its = 30
  nl_max_its = 1000

  start_time = 0.0
  dt = 0.5
  end_time = 100.0

[]

[Outputs]
  interval = 1
  print_linear_residuals = false
  exodus = true
  csv = true
  console = true
[]

test/tests/test_harness/500_num_steps.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.01
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 500
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/perf_graph/multi_app/sub_sub_cycle.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  uniform_refine = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1 # This will be constrained by the master solve

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  perf_graph = true
[]

modules/porous_flow/test/tests/jacobian/fflux07.i

# 2phase (PS), 2components (that exist in both phases), constant viscosity, constant insitu permeability
# density with constant bulk, Corey relative perm, nonzero gravity, vanGenuchten capillary pressure
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./sgas]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = 0
    max = 1
  [../]
  [./ppgas]
    type = RandomIC
    variable = sgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
    gravity = '-1 -0.1 0'
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = sgas
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
    pc_max = 10
    sat_lr = 0.1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
    s_res = 0.0
    sum_s_res = 0.1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_periodic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 85
  ny = 85
  nz = 0
  xmax = 250
  ymax = 250
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 5
  grain_num = 5
  var_name_base = gr
  numbub = 15
  bubspac = 22
  radius = 8
  int_width = 10
  invalue = 1
  outvalue = 0.1
[]

[Variables]
  [./c]
  [../]
  [./w]
    scaling = 1.0e4
  [../]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalVoronoiVoidIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
  [./c_IC]
    variable = c
    type = PolycrystalVoronoiVoidIC
    structure_type = voids
    polycrystal_ic_uo = voronoi
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 10
    int_width = 0
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/explicit_ssp_runge_kutta/explicit_ssp_runge_kutta.i

# This test solves the following IVP:
#   du/dt = f(u(t), t),   u(0) = 1
#   f(u(t), t) = -u(t) + t^3 + 3t^2
# The exact solution is the following:
#   u(t) = exp(-t) + t^3

[Mesh]
  [./mesh]
    type = GeneratedMeshGenerator
    dim = 1
    nx = 1
  [../]
[]

[Variables]
  [./u]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
[]

[ScalarKernels]
  [./time_derivative]
    type = ODETimeDerivative
    variable = u
  [../]
  [./source_part1]
    type = ParsedODEKernel
    variable = u
    function = 'u'
  [../]
  [./source_part2]
    type = PostprocessorSinkScalarKernel
    variable = u
    postprocessor = sink_pp
  [../]
[]

[Functions]
  [./sink_fn]
    type = ParsedFunction
    value = '-t^3 - 3*t^2'
  [../]
[]

[Postprocessors]
  [./sink_pp]
    type = FunctionValuePostprocessor
    function = sink_fn
    execute_on = 'LINEAR NONLINEAR'
  [../]
  [./l2_err]
    type = ScalarL2Error
    variable = u
    function = ${fparse exp(-0.5) + 0.5^3}
  [../]
[]

[Executioner]
  type = Transient

  [./TimeIntegrator]
    type = ExplicitSSPRungeKutta
    order = 1
  [../]

  end_time = 0.5
  dt = 0.1
[]

[Outputs]
  file_base = 'first_order'
  exodus = true
  [./csv]
    type = CSV
    show = 'u'
    execute_on = 'FINAL'
  [../]
[]

modules/porous_flow/test/tests/aux_kernels/darcy_velocity_lower_2D.i

# checking that the PorousFlowDarcyVelocityComponentLowerDimensional AuxKernel works as expected in 1D+2D situation
# for the fully-saturated case (relative-permeability = 1)
# The 1_frac_in_2D_example.e has size 0.3x0.2x0, and a fracturing running through its
# centre, with normal = (0, 1, 0)
# Porepressure is initialised to grad(P) = (1, 2, 0)
# Fluid_density = 2
# viscosity = 10
# relative_permeability = 1
# permeability = (5, 5, 5)  (in the bulk, measured in m^2)
# permeability = (10, 10, 10)   (in the fracture, measured in m^3)
# aperture = 0.01
# gravity = (1, 0.5, 0)
# So Darcy velocity in the bulk = (0.5, -0.5, 0)
# in the fracture grad(P) = (1, 0, 0)
# In the fracture the projected gravity vector is
# tangential_gravity = (1, 0, 0)
# So the Darcy velocity in the fracture = (100, 0, 0)

[Mesh]
  type = FileMesh
  file = 1_frac_in_2D_example.e
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '1 0.5 0'
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pinit]
    type = FunctionIC
    function = 'x+2*y'
    variable = pp
  [../]
[]

[Kernels]
  [./dummy]
    type = TimeDerivative
    variable = pp
  [../]
[]

[AuxVariables]
  [./bulk_vel_x]
    order = CONSTANT
    family = MONOMIAL
    block = '2 3'
  [../]
  [./bulk_vel_y]
    order = CONSTANT
    family = MONOMIAL
    block = '2 3'
  [../]
  [./bulk_vel_z]
    order = CONSTANT
    family = MONOMIAL
    block = '2 3'
  [../]
  [./fracture_vel_x]
    order = CONSTANT
    family = MONOMIAL
    block = 1
  [../]
  [./fracture_vel_y]
    order = CONSTANT
    family = MONOMIAL
    block = 1
  [../]
  [./fracture_vel_z]
    order = CONSTANT
    family = MONOMIAL
    block = 1
  [../]
[]

[AuxKernels]
  [./bulk_vel_x]
    type = PorousFlowDarcyVelocityComponent
    variable = bulk_vel_x
    component = x
    fluid_phase = 0
  [../]
  [./bulk_vel_y]
    type = PorousFlowDarcyVelocityComponent
    variable = bulk_vel_y
    component = y
    fluid_phase = 0
  [../]
  [./bulk_vel_z]
    type = PorousFlowDarcyVelocityComponent
    variable = bulk_vel_z
    component = z
    fluid_phase = 0
  [../]
  [./fracture_vel_x]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = fracture_vel_x
    component = x
    fluid_phase = 0
    aperture = 0.01
  [../]
  [./fracture_vel_y]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = fracture_vel_y
    component = y
    fluid_phase = 0
    aperture = 0.01
  [../]
  [./fracture_vel_z]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = fracture_vel_z
    component = z
    fluid_phase = 0
    aperture = 0.01
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1E16
      viscosity = 10
      density0 = 2
      thermal_expansion = 0
    [../]
  [../]
[]

[Postprocessors]
  [./bulk_vel_x]
    type = PointValue
    variable = bulk_vel_x
    point = '0 -0.05 0'
  [../]
  [./bulk_vel_y]
    type = PointValue
    variable = bulk_vel_y
    point = '0 -0.05 0'
  [../]
  [./bulk_vel_z]
    type = PointValue
    variable = bulk_vel_z
    point = '0 -0.05 0'
  [../]
  [./fracture_vel_x]
    type = PointValue
    point = '0 0 0'
    variable = fracture_vel_x
  [../]
  [./fracture_vel_y]
    type = PointValue
    point = '0 0 0'
    variable = fracture_vel_y
  [../]
  [./fracture_vel_z]
    type = PointValue
    point = '0 0 0'
    variable = fracture_vel_z
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '5 0 0 0 5 0 0 0 5'
    block = '2 3'
  [../]
  [./permeability_fracture]
    type = PorousFlowPermeabilityConst
    permeability = '10 0 0 0 10 0 0 0 10'
    block = 1
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  csv = true
[]

test/tests/multiapps/sub_cycling/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub.i
    sub_cycling = true
  [../]
[]

modules/phase_field/examples/interfacekernels/interface_fluxbc.i

#
# This test demonstrates an InterfaceKernel (InterfaceDiffusionFlux) that can
# replace a pair of integrated DiffusionFluxBC boundary conditions.
#
# The AuxVariable 'diff' shows the difference between the BC and the InterfaceKernel
# approach.
#

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 50
    ny = 50
  []
  [./box1]
    input = gen
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '0.51 1 0'
  [../]
  [./box2]
    input = box1
    type = SubdomainBoundingBoxGenerator
    block_id = 2
    bottom_left = '0.49 0 0'
    top_right = '1 1 0'
  [../]
  [./iface_u]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = 1
    paired_block = 2
    new_boundary = 10
    input = box2
  [../]
  [./iface_v]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = 2
    paired_block = 1
    new_boundary = 11
    input = iface_u
  [../]
[]

[Variables]
  [./u1]
    block = 1
    [./InitialCondition]
      type = FunctionIC
      function = 'r:=sqrt((x-0.4)^2+(y-0.5)^2);if(r<0.05,5,1)'
    [../]
  [../]
  [./v1]
    block = 2
    [./InitialCondition]
      type = FunctionIC
      function = 'r:=sqrt((x-0.7)^2+(y-0.5)^2);if(r<0.05,5,1)'
    [../]
  [../]
  [./u2]
    block = 1
    [./InitialCondition]
      type = FunctionIC
      function = 'r:=sqrt((x-0.4)^2+(y-0.5)^2);if(r<0.05,5,1)'
    [../]
  [../]
  [./v2]
    block = 2
    [./InitialCondition]
      type = FunctionIC
      function = 'r:=sqrt((x-0.7)^2+(y-0.5)^2);if(r<0.05,5,1)'
    [../]
  [../]
[]

[Kernels]
  [./u1_diff]
    type = Diffusion
    variable = u1
    block = 1
  [../]
  [./u1_dt]
    type = TimeDerivative
    variable = u1
    block = 1
  [../]
  [./v1_diff]
    type = Diffusion
    variable = v1
    block = 2
  [../]
  [./v1_dt]
    type = TimeDerivative
    variable = v1
    block = 2
  [../]

  [./u2_diff]
    type = Diffusion
    variable = u2
    block = 1
  [../]
  [./u2_dt]
    type = TimeDerivative
    variable = u2
    block = 1
  [../]
  [./v2_diff]
    type = Diffusion
    variable = v2
    block = 2
  [../]
  [./v2_dt]
    type = TimeDerivative
    variable = v2
    block = 2
  [../]
[]

[AuxVariables]
  [./diff]
  [../]
[]

[AuxKernels]
  [./u_side]
    type = ParsedAux
    variable = diff
    block = 1
    args = 'u1 u2'
    function = 'u1 - u2'
  [../]
  [./v_side]
    type = ParsedAux
    variable = diff
    block = 2
    args = 'v1 v2'
    function = 'v1 - v2'
  [../]
[]

[InterfaceKernels]
  [./iface]
    type = InterfaceDiffusionBoundaryTerm
    boundary = 10
    variable = u2
    neighbor_var = v2
  [../]
[]

[BCs]
  [./u_boundary_term]
    type = DiffusionFluxBC
    variable = u1
    boundary = 10
  [../]
  [./v_boundary_term]
    type = DiffusionFluxBC
    variable = v1
    boundary = 11
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.001
  num_steps = 20
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
[]

test/tests/postprocessors/nodal_var_value/pps_output_test.i

[Mesh]
  file = square-2x2-nodeids.e
  # This test can only be run with renumering disabled, so the
  # NodalVariableValue postprocessor's node id is well-defined.
  allow_renumbering = false
[]

[Variables]
  active = 'u v'

  [./u]
    order = SECOND
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Functions]
  active = 'force_fn exact_fn left_bc'

  [./force_fn]
    type = ParsedFunction
    value = '1-x*x+2*t'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = '(1-x*x)*t'
  [../]

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = '
    time_u diff_u ffn_u
    time_v diff_v'

  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'all_u left_v right_v'

  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = exact_fn
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '2'
    value = 0
  [../]
[]

[Postprocessors]
  [./l2]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./node1]
    type = NodalVariableValue
    variable = u
    nodeid = 15
    outputs = exodus
  [../]

  [./node4]
    type = NodalVariableValue
    variable = v
    nodeid = 10
    outputs = console
  [../]

  [./avg_v]
    type = AverageElementSize
    outputs = none
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest2.i

# 3D, concave block
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 1
  xmin = 0
  xmax = 4
  ymin = 0
  ymax = 4
  zmin = 0
  zmax = 1
[]

[MeshModifiers]
  [./SubdomainBoundingBox]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeleter
    block_id = 1
    depends_on = SubdomainBoundingBox
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/moving_interface/verification/1D_xy_discrete2mat.i

# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality:                                   quasi-1D
# Coordinate System:                                      xy
# Material Numbers/Types:discrete homog 2 material, 2 region
# Element Order:                                         1st
# Interface Characteristics: u independent, prescribed level set function
# Description
#   A transient heat transfer problem in Cartesian coordinates designed with
#   the Method of Manufactured Solutions. This problem was developed to verify
#   XFEM performance in the presence of a moving interface separating two
#   discrete material regions for linear element models. Both the temperature
#   solution and level set function are designed to be linear to attempt to
#   minimize error between the exact solution and XFEM results. Thermal
#   conductivity, density, and heat capacity are homogeneous in each material
#   region with a discontinuous jump in thermal flux between the two material
#   regions.
# Results:
#   The temperature at the left boundary is determined by the analytical
#   solution, so temperature at the right boundary (x=1) should exhibit the
#   largest difference between the analytical solution and XFEM results. We
#   present the analytical and XFEM results at the material interface position
#   and right side boundary at various times.
#  Interface:
#     Time    Expected Temperature    XFEM Calculated Temperature
#       20       746.75                  746.7235521
#       40       893.05                  893.0379081
#       60      1040.15                 1040.1527530
#
#  Right Boundary (x=1):
#     Time    Expected Temperature    XFEM Calculated Temperature
#       20       720                     719.9708681
#       40       840                     839.9913293
#       60       960                     960.0100886
#
# IMPORTANT NOTE:
#   When running this input file, add the --allow-test-objects tag!!!
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 1
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 0.5
  elem_type = QUAD4
[]

[XFEM]
  qrule = moment_fitting
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = phi
    heal_always = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./phi]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./heat_cond]
    type = MatDiffusion
    variable = u
    diffusivity = 'diffusion_coefficient'
  [../]
  [./vol_heat_src]
    type = BodyForce
    variable = u
    function = src_func
  [../]
  [./mat_time_deriv]
    type = TestMatTimeDerivative
    variable = u
    mat_prop_value = rhoCp
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = phi
    function = ls_func
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    geometric_cut_userobject = 'level_set_cut_uo'
    jump_flux = jump_flux_func
    use_penalty = true
    alpha = 1e5
  [../]
[]

[Functions]
  [./src_func]
    type = ParsedFunction
    value = 'phi:=(0.75-x-0.001*t);
        i:=(0.75-0.001*t);
        if (phi>=0,
            10*(8-x),
            (7/(1-i))*((i-2)*x + (8-7*i)) )'
  [../]
  [./right_du_func]
    type = ParsedFunction
    value = 'i:=(0.75-0.001*t);
        (2.0/(1-i))*(-5+5*i+i*t-2*t)'
  [../]
  [./exact_u_func]
    type = ParsedFunction
    value = 'phi:=(0.75-x-0.001*t);
        i:=(0.75-0.001*t);
        if (phi>=0,
            605 - 5*x + t*(8-x),
            (1/(1-i))*((-5+5*i+i*t-2*t)*x + (605-605*i+8*t-7*t*i)) )'
  [../]
  [./jump_flux_func]
    type = ParsedFunction
    value = 'i:=(0.75-0.001*t);
        k_1:=(20.0);
        k_2:=(2.0);
        k_1*(5+t) + (k_2/(1-i))*(-5+5*i+i*t-2*t)'
  [../]

  [./ls_func]
    type = ParsedFunction
    value = '0.75 - x - 0.001*t'
  [../]
[]

[Materials]
  [./mat_time_deriv_prop]
    type = GenericConstantMaterial
    prop_names = 'A_rhoCp B_rhoCp'
    prop_values = '10 7'
  [../]
  [./therm_cond_prop]
    type = GenericConstantMaterial
    prop_names = 'A_diffusion_coefficient B_diffusion_coefficient'
    prop_values = '20.0 2.0'
  [../]

  [./combined_rhoCp]
    type = LevelSetBiMaterialReal
    levelset_positive_base = 'A'
    levelset_negative_base = 'B'
    level_set_var = phi
    prop_name = rhoCp
  [../]
  [./combined_diffusion_coefficient]
    type = LevelSetBiMaterialReal
    levelset_positive_base = 'A'
    levelset_negative_base = 'B'
    level_set_var = phi
    prop_name = diffusion_coefficient
  [../]
[]

[BCs]
  [./left_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left'
    function = exact_u_func
  [../]
  [./right_du]
    type = FunctionNeumannBC
    variable = u
    boundary = 'right'
    function = right_du_func
  [../]
[]

[ICs]
  [./u_ic]
    type = ConstantIC
    value = 600
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  # petsc_options_iname = '-pc_type -pc_hypre_type'
  # petsc_options_value = 'hypre boomeramg'
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
  line_search = 'none'

  l_tol = 1.0e-6
  nl_max_its = 15
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-9

  start_time = 0.0
  dt = 20
  end_time = 60.0
  max_xfem_update = 2
[]

[Outputs]
  interval = 1
  execute_on = 'initial timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/misc/intermittent_failure/intermittent_failure.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

# This object will behave different on different invocations if
# MOOSE_ENABLE_INTERMITTENT_FAILURES is set
[UserObjects]
  [intermittent_failure]
    type = IntermittentFailureUO
    timestep_to_fail = 2
  []
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/jacobian_2/jn_lumped_08.i

# two phase
# unsaturated = true

# gravity = true
# supg = true
# transient = true

# with mass lumping

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn116
  exodus = false
[]

modules/functional_expansion_tools/test/tests/standard_use/interface_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0.4
  xmax = 2.4
  nx = 30
  ymin = 0.0
  ymax = 10.0
  ny = 20
[]

[Variables]
  [./s]
  [../]
[]

[Kernels]
  [./diff_s]
    type = Diffusion
    variable = s
  [../]
  [./time_diff_s]
    type = TimeDerivative
    variable = s
  [../]
[]

[ICs]
  [./start_s]
    type = ConstantIC
    value = 2
    variable = s
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = s
    boundary = bottom
    value = 0.1
  [../]
  [./interface_flux]
    type = FXFluxBC
    boundary = left
    variable = s
    function = FX_Basis_Flux_Sub
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '4'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
  [./FX_Basis_Flux_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '5'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXBoundaryValueUserObject
    function = FX_Basis_Value_Sub
    variable = s
    boundary = left
  [../]
  [./FX_Flux_UserObject_Sub]
    type = FXBoundaryFluxUserObject
    function = FX_Basis_Flux_Sub
    variable = s
    boundary = left
    diffusivity = 1.0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 1.0
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

modules/phase_field/test/tests/reconstruction/2phase_reconstruction.i

#
# In this test we set the initial condition of two variables
# based on solely the phase information in a given EBSD data file,
# ignoring the feature IDs entirely
#

[Problem]
  type = FEProblem
  solve = false
  kernel_coverage_check = false
[]

# The following sections are extracted in the documentation in
# moose/docs/content/modules/phase_field/ICs/EBSD.md

[Mesh]
  # Create a mesh representing the EBSD data
  type = EBSDMesh
  filename = 'Ti_2Phase_28x28_ebsd.txt'
[]

[UserObjects]
  [./ebsd]
    # Read in the EBSD data. Uses the filename given in the mesh block.
    type = EBSDReader
  [../]
[]

[Variables]
  # Creates the two variables being initialized
  [./c1]
  [../]
  [./c2]
  [../]
[]

[ICs]
  [./phase1_recon]
    # Initializes the variable info from the ebsd data
    type = ReconPhaseVarIC
    ebsd_reader = ebsd
    phase = 1
    variable = c1
  [../]
  [./phase2_recon]
    type = ReconPhaseVarIC
    ebsd_reader = ebsd
    phase = 2
    variable = c2
  [../]
[]
#ENDDOC - End of the file section that is included in the documentation. Do not change this line!

[AuxVariables]
  [./PHI1]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./PHI]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./APHI2]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./PHI2]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./PHASE]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./phi1_aux]
    type = EBSDReaderPointDataAux
    variable = PHI1
    ebsd_reader = ebsd
    data_name = 'phi1'
    execute_on = 'initial'
  [../]
  [./phi_aux]
    type = EBSDReaderPointDataAux
    variable = PHI
    ebsd_reader = ebsd
    data_name = 'phi'
    execute_on = 'initial'
  [../]
  [./phi2_aux]
    type = EBSDReaderPointDataAux
    variable = PHI2
    ebsd_reader = ebsd
    data_name = 'phi2'
    execute_on = 'initial'
  [../]
  [./phase_aux]
    type = EBSDReaderPointDataAux
    variable = PHASE
    ebsd_reader = ebsd
    data_name = 'phase'
    execute_on = 'initial'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/initial_conditions/polycrystalcircles_fromvector.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 56
  nz = 0
  xmin = 0
  xmax = 200
  ymin = 0
  ymax = 112
  zmin = 0
  zmax = 0
[]

[GlobalParams]
  op_num = 6
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
[]

[UserObjects]
  [./circle_IC]
    type = PolycrystalCircles
    radii =       '22  22  30  22  22  22  22  22 '
    x_positions = '34  78  122 166 34  78  122 166'
    y_positions = '34  34  34  34  78  78  78  78 '
    z_positions = '0   0   0   0   0   0   0   0  '
    execute_on = 'initial'
    threshold = 0.2
    connecting_threshold = 0.08
    int_width = 8
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = circle_IC
    [../]
  [../]
[]

[Kernels]
  [./dt_gr0]
    type = TimeDerivative
    variable = gr0
  [../]
  [./dt_gr1]
    type = TimeDerivative
    variable = gr1
  [../]
  [./dt_gr2]
    type = TimeDerivative
    variable = gr2
  [../]
  [./dt_gr3]
    type = TimeDerivative
    variable = gr3
  [../]
  [./dt_gr4]
    type = TimeDerivative
    variable = gr4
  [../]
  [./dt_gr5]
    type = TimeDerivative
    variable = gr5
  [../]
[]

[AuxKernels]
  [./bnds_aux]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  num_steps = 0
[]

[Outputs]
  exodus = true
  csv = false
[]

modules/porous_flow/test/tests/energy_conservation/heat04_action.i

# heat04, but using an action
#
# The sample is a single unit element, with fixed displacements on
# all sides.  A heat source of strength S (J/m^3/s) is applied into
# the element.  There is no fluid flow or heat flow.  The rise
# in temperature, porepressure and stress, and the change in porosity is
# matched with theory.
#
# In this case, fluid mass must be conserved, and there is no
# volumetric strain, so
# porosity * fluid_density = constant
# Also, the energy-density in the rock-fluid system increases with S:
# d/dt [(1 - porosity) * rock_density * rock_heat_cap * T + porosity * fluid_density * fluid_heat_cap * T] = S
# Also, the porosity evolves according to THM as
# porosity = biot + (porosity0 - biot) * exp( (biot - 1) * P / fluid_bulk + rock_thermal_exp * T)
# Finally, the effective stress must be exactly zero (as there is
# no strain).
#
# Let us assume that
# fluid_density = dens0 * exp(P / fluid_bulk - fluid_thermal_exp * T)
# Then the conservation of fluid mass means
# porosity = por0 * exp(- P / fluid_bulk + fluid_thermal_exp * T)
# where dens0 * por0 = the initial fluid mass.
# The last expression for porosity, combined with the THM one,
# and assuming that biot = 1 for simplicity, gives
# porosity = 1 + (porosity0 - 1) * exp(rock_thermal_exp * T) = por0 * exp(- P / fluid_bulk + fluid_thermal_exp * T) .... (A)
#
# This stuff may be substituted into the heat energy-density equation:
# S = d/dt [(1 - porosity0) * exp(rock_thermal_exp * T) * rock_density * rock_heat_cap * T + porosity * fluid_density * fluid_heat_cap * T]
#
# If S is constant then
# S * t = (1 - porosity0) * exp(rock_thermal_exp * T) * rock_density * rock_heat_cap * T + porosity * fluid_density * fluid_heat_cap * T
# with T(t=0) = 0 then Eqn(A) implies that por0 = porosity0 and
# P / fluid_bulk = fluid_thermal_exp * T - log(1 + (por0 - 1) * exp(rock_thermal_exp * T)) + log(por0)
#
# Parameters:
# A = 2
# fluid_bulk = 2.0
# dens0 = 3.0
# fluid_thermal_exp = 0.5
# fluid_heat_cap = 2
# por0 = 0.5
# rock_thermal_exp = 0.25
# rock_density = 5
# rock_heat_capacity = 0.2

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.5
      cv = 2
      cp = 2
      bulk_modulus = 2.0
      density0 = 3.0
    [../]
  [../]
[]

[PorousFlowUnsaturated]
  coupling_type = ThermoHydroMechanical
  displacements = 'disp_x disp_y disp_z'
  porepressure = pp
  temperature = temp
  dictator_name = Sir
  biot_coefficient = 1.0
  gravity = '0 0 0'
  fp = the_simple_fluid
  van_genuchten_alpha = 1.0E-12
  van_genuchten_m = 0.5
  relative_permeability_type = Corey
  relative_permeability_exponent = 0.0
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = Sir
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pp]
  [../]
  [./temp]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
[]

[Kernels]
  [./heat_source]
    type = BodyForce
    function = 1
    variable = temp
  [../]
[]

[Functions]
  [./err_T_fcn]
    type = ParsedFunction
    vars = 'por0 rte temp rd rhc m0 fhc source'
    vals = '0.5 0.25 t0   5  0.2 1.5 2  1'
    value = '((1-por0)*exp(rte*temp)*rd*rhc*temp+m0*fhc*temp-source*t)/(source*t)'
  [../]
  [./err_pp_fcn]
    type = ParsedFunction
    vars = 'por0 rte temp rd rhc m0 fhc source bulk pp fte'
    vals = '0.5 0.25 t0   5  0.2 1.5 2  1      2    p0 0.5'
    value = '(bulk*(fte*temp-log(1+(por0-1)*exp(rte*temp))+log(por0))-pp)/pp'
  [../]
[]

[AuxVariables]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./porosity]
    type = PorousFlowPorosity
    thermal = true
    fluid = true
    mechanical = true
    ensure_positive = false
    biot_coefficient = 1.0
    porosity_zero = 0.5
    thermal_expansion_coeff = 0.25
    solid_bulk = 2
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 0.2
    density = 5.0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0 0 0 0 0 0 0 0 0'
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '0 0 0  0 0 0  0 0 0'
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = pp
  [../]
  [./t0]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = temp
  [../]
  [./porosity]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = porosity
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./fluid_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
  [./total_heat]
    type = PorousFlowHeatEnergy
    phase = 0
    execute_on = 'timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
  [./err_T]
    type = FunctionValuePostprocessor
    function = err_T_fcn
  [../]
  [./err_P]
    type = FunctionValuePostprocessor
    function = err_pp_fcn
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 5
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = heat04_action
  csv = true
[]

test/tests/outputs/perf_graph/multi_app/master_sub_cycle.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  perf_graph = true
[]

[MultiApps]
  [./sub_app]
    positions = '0 0 0'
    type = TransientMultiApp
    input_files = 'sub_sub_cycle.i'
    app_type = MooseTestApp
    sub_cycling = true
  [../]
[]

modules/chemical_reactions/examples/calcium_bicarbonate/calcium_bicarbonate.i

# Example of reactive transport model with precipitation and dissolution.
# Calcium (ca2) and bicarbonate (hco3) reaction to form calcite (CaCO3).
# Models bicarbonate injection following calcium injection, so that a
# moving reaction front forms a calcite precipitation zone. As the front moves,
# the upstream side of the front continues to form calcite via precipitation,
# while at the downstream side, dissolution of the solid calcite occurs.
#
# The reaction network considered is as follows:
# Aqueous equilibrium reactions:
# a)  h+ + hco3- = CO2(aq),             Keq = 10^(6.341)
# b)  hco3- = h+ + CO23-,               Keq = 10^(-10.325)
# c)  ca2+ + hco3- = h+ + CaCO3(aq),    Keq = 10^(-7.009)
# d)  ca2+ + hco3- = cahco3+,           Keq = 10^(-0.653)
# e)  ca2+ = h+ + CaOh+,                Keq = 10^(-12.85)
# f)  - h+ = oh-,                       Keq = 10^(-13.991)
#
# Kinetic reactions
# g)  ca2+ + hco3- = h+ + CaCO3(s),     A = 0.461 m^2/L, k = 6.456542e-2 mol/m^2 s,
#                                       Keq = 10^(1.8487)
#
# The primary chemical species are h+, hco3- and ca2+. The pressure gradient is fixed,
# and a conservative tracer is also included.
#
# This example is taken from:
# Guo et al, A parallel, fully coupled, fully implicit solution to reactive
# transport in porous media using the preconditioned Jacobian-Free Newton-Krylov
# Method, Advances in Water Resources, 53, 101-108 (2013).

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  xmax = 1
  ymax = 0.25
[]

[Variables]
  [./tracer]
  [../]
  [./ca2+]
  [../]
  [./h+]
    initial_condition = 1.0e-7
    scaling = 1e6
  [../]
  [./hco3-]
  [../]
[]

[AuxVariables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./pressure_ic]
    type = FunctionIC
    variable = pressure
    function = pic
  [../]
  [./hco3_ic]
    type = BoundingBoxIC
    variable = hco3-
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 0.25
    inside = 5.0e-2
    outside = 1.0e-6
  [../]
  [./ca2_ic]
    type = BoundingBoxIC
    variable = ca2+
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 0.25
    inside = 1.0e-6
    outside = 5.0e-2
  [../]
  [./tracer_ic]
    type = BoundingBoxIC
    variable = tracer
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 0.25
    inside = 1.0
    outside = 0.0
  [../]
[]

[Functions]
  [./pic]
    type = ParsedFunction
    value = 60-50*x
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = 'ca2+ hco3- h+'
    secondary_species = 'co2_aq co32- caco3_aq cahco3+ caoh+ oh-'
    pressure = pressure
    reactions = 'h+ + hco3- = co2_aq 6.341,
                 hco3- - h+ = co32- -10.325,
                 ca2+ + hco3- - h+ = caco3_aq -7.009,
                 ca2+ + hco3- = cahco3+ -0.653,
                 ca2+ - h+ = caoh+ -12.85,
                 - h+ = oh- -13.991'
  [../]
  [./SolidKineticReactions]
    primary_species = 'ca2+ hco3- h+'
    kin_reactions = 'ca2+ + hco3- - h+ = caco3_s'
    secondary_species = caco3_s
    log10_keq = 1.8487
    reference_temperature = 298.15
    system_temperature = 298.15
    gas_constant = 8.314
    specific_reactive_surface_area = 4.61e-4
    kinetic_rate_constant = 6.456542e-7
    activation_energy = 1.5e4
  [../]
[]

[Kernels]
  [./tracer_ie]
    type = PrimaryTimeDerivative
    variable = tracer
  [../]
  [./tracer_pd]
    type = PrimaryDiffusion
    variable = tracer
  [../]
  [./tracer_conv]
    type = PrimaryConvection
    variable = tracer
    p = pressure
  [../]
  [./ca2+_ie]
    type = PrimaryTimeDerivative
    variable = ca2+
  [../]
  [./ca2+_pd]
    type = PrimaryDiffusion
    variable = ca2+
  [../]
  [./ca2+_conv]
    type = PrimaryConvection
    variable = ca2+
    p = pressure
  [../]
  [./h+_ie]
    type = PrimaryTimeDerivative
    variable = h+
  [../]
  [./h+_pd]
    type = PrimaryDiffusion
    variable = h+
  [../]
  [./h+_conv]
    type = PrimaryConvection
    variable = h+
    p = pressure
  [../]
  [./hco3-_ie]
    type = PrimaryTimeDerivative
    variable = hco3-
  [../]
  [./hco3-_pd]
    type = PrimaryDiffusion
    variable = hco3-
  [../]
  [./hco3-_conv]
    type = PrimaryConvection
    variable = hco3-
    p = pressure
  [../]
[]

[BCs]
  [./tracer_left]
    type = DirichletBC
    variable = tracer
    boundary = left
    value = 1.0
  [../]
  [./tracer_right]
    type = ChemicalOutFlowBC
    variable = tracer
    boundary = right
  [../]
  [./ca2+_left]
    type = SinDirichletBC
    variable = ca2+
    boundary = left
    initial = 5.0e-2
    final = 1.0e-6
    duration = 1
  [../]
  [./ca2+_right]
    type = ChemicalOutFlowBC
    variable = ca2+
    boundary = right
  [../]
  [./hco3-_left]
    type = SinDirichletBC
    variable = hco3-
    boundary = left
    initial = 1.0e-6
    final = 5.0e-2
    duration = 1
  [../]
  [./hco3-_right]
    type = ChemicalOutFlowBC
    variable = hco3-
    boundary = right
  [../]
  [./h+_left]
    type = DirichletBC
    variable = h+
    boundary = left
    value = 1.0e-7
  [../]
  [./h+_right]
    type = ChemicalOutFlowBC
    variable = h+
    boundary = right
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-7 2e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  l_max_its = 50
  l_tol = 1e-5
  nl_max_its = 10
  nl_rel_tol = 1e-5
  end_time = 10
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  perf_graph = true
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_1/ring1_template1_sm.i

[Mesh]
  file = ring1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]


[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/xfem/test/tests/init_solution_propagation/sm/init_solution_propagation.i

# The purpose of this test is to verify that the procedures for initializing
# the solution on nodes/elements affected by XFEM works correctly in both
# serial and parallel.

# The crack cuts near to domain boundaries in parallel, and the displacement
# solution will be wrong in parallel if this is not done correctly.  This
# test also has multiple aux variables of various types that are only computed
# on initialization, and which will be wrong if the XFEM initializtion
# is not done correctly.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 7
  ny = 7
  xmin = 0.0
  xmax = 25.0
  ymin = -12.5
  ymax = 12.5
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
[]

[UserObjects]
  [./line_seg_cut_set_uo]
    type = LineSegmentCutSetUserObject
    cut_data ='0.0000e+000  0.0000e+000  5.5000e+000  0.0000e+000  0.0   0.0
               5.5000e+000  0.0000e+000  2.5500e+001  0.0000e+000  0.05  1.05'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./const_monomial]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./first_monomial]
    order = FIRST
    family = MONOMIAL
  [../]
  [./first_linear]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./const_monomial]
    type = FunctionAux
    function = 'dummy'
    variable = const_monomial
    execute_on = 'initial'
  [../]
  [./first_monomial]
    type = FunctionAux
    function = 'dummy'
    variable = first_monomial
    execute_on = 'initial'
  [../]
  [./first_linear]
    type = FunctionAux
    function = 'dummy'
    variable = first_linear
    execute_on = 'initial'
  [../]
[]

[Functions]
  [./dummy]
    type = ParsedFunction
    value = 'x*x+y*y'
  [../]
  [./disp_top_y]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.1'
  [../]
[]

[BCs]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = disp_top_y
  [../]

  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_body1]
    type = Elastic
    block = 0
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    disp_x = disp_x
    disp_y = disp_y
    formulation = nonlinearplanestrain
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  petsc_options = '-snes_ksp_ew'

  l_max_its = 100
  nl_max_its = 25
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-8

  start_time = 0.0
  dt = 0.1
  end_time = 1.0
  max_xfem_update = 1
[]


[Outputs]
  exodus = true
  csv = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/tensor_mechanics/test/tests/2D_different_planes/planestrain_yz.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = square_yz_plane.e
[]

[Variables]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./disp_x]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./plane_strain]
    block = 1
    strain = SMALL
    out_of_plane_direction = x
    planar_formulation = PLANE_STRAIN
    eigenstrain_names = 'eigenstrain'
    generate_output = 'stress_xx stress_yz stress_yy stress_zz strain_xx strain_yz strain_yy strain_zz'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-y)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 4
    variable = disp_y
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 4
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_stress]
    type = ComputeLinearElasticStress
    block = 1
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Postprocessors]
  [./react_x]
    type = MaterialTensorIntegral
    use_displaced_mesh = false
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-10

# controls for nonlinear iterations
  nl_max_its = 10
  nl_rel_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  file_base = planestrain_yz_small_out
  exodus = true
[]

modules/phase_field/examples/kim-kim-suzuki/kks_example_noflux.i

#
# KKS simple example in the split form
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 150
  ny = 15
  nz = 0
  xmin = -25
  xmax = 25
  ymin = -2.5
  ymax = 2.5
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[AuxVariables]
  [./Fglobal]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Variables]
  # order parameter
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]

  # solute concentration
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]

  # chemical potential
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]

  # Liquid phase solute concentration
  [./cl]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.1
  [../]
  # Solid phase solute concentration
  [./cs]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.9
  [../]
[]

[Functions]
  [./ic_func_eta]
    type = ParsedFunction
    value = '0.5*(1.0-tanh((x)/sqrt(2.0)))'
  [../]
  [./ic_func_c]
    type = ParsedFunction
    value = '0.9*(0.5*(1.0-tanh(x/sqrt(2.0))))^3*(6*(0.5*(1.0-tanh(x/sqrt(2.0))))^2-15*(0.5*(1.0-tanh(x/sqrt(2.0))))+10)+0.1*(1-(0.5*(1.0-tanh(x/sqrt(2.0))))^3*(6*(0.5*(1.0-tanh(x/sqrt(2.0))))^2-15*(0.5*(1.0-tanh(x/sqrt(2.0))))+10))'
  [../]
[]


[ICs]
  [./eta]
    variable = eta
    type = FunctionIC
    function = ic_func_eta
  [../]
  [./c]
    variable = c
    type = FunctionIC
    function = ic_func_c
  [../]
[]

[Materials]
  # Free energy of the liquid
  [./fl]
    type = DerivativeParsedMaterial
    f_name = fl
    args = 'cl'
    function = '(0.1-cl)^2'
  [../]

  # Free energy of the solid
  [./fs]
    type = DerivativeParsedMaterial
    f_name = fs
    args = 'cs'
    function = '(0.9-cs)^2'
  [../]

  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'M   L   eps_sq'
    prop_values = '0.7 0.7 1.0  '
  [../]
[]

[Kernels]
  active = 'PhaseConc ChemPotSolute CHBulk ACBulkF ACBulkC ACInterface dcdt detadt ckernel'

  # enforce c = (1-h(eta))*cl + h(eta)*cs
  [./PhaseConc]
    type = KKSPhaseConcentration
    ca       = cl
    variable = cs
    c        = c
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotSolute]
    type = KKSPhaseChemicalPotential
    variable = cl
    cb       = cs
    fa_name  = fl
    fb_name  = fs
  [../]

  #
  # Cahn-Hilliard Equation
  #
  [./CHBulk]
    type = KKSSplitCHCRes
    variable = c
    ca       = cl
    fa_name  = fl
    w        = w
  [../]

  [./dcdt]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./ckernel]
    type = SplitCHWRes
    mob_name = M
    variable = w
  [../]

  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = fl
    fb_name  = fs
    w        = 1.0
    args = 'cl cs'
  [../]
  [./ACBulkC]
    type = KKSACBulkC
    variable = eta
    ca       = cl
    cb       = cs
    fa_name  = fl
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = eps_sq
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[AuxKernels]
  [./GlobalFreeEnergy]
    variable = Fglobal
    type = KKSGlobalFreeEnergy
    fa_name = fl
    fb_name = fs
    w = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type'
  petsc_options_value = 'asm      ilu          nonzero'

  l_max_its = 100
  nl_max_its = 100

  num_steps = 50
  dt = 0.1
[]

#
# Precondition using handcoded off-diagonal terms
#
[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]


[VectorPostprocessors]
  [./c]
    type =  LineValueSampler
    start_point = '-25 0 0'
    end_point = '25 0 0'
    variable = c
    num_points = 151
    sort_by =  id
    execute_on = timestep_end
  [../]
  [./eta]
    type =  LineValueSampler
    start_point = '-25 0 0'
    end_point = '25 0 0'
    variable = eta
    num_points = 151
    sort_by =  id
    execute_on = timestep_end
  [../]

[]

[Outputs]
  exodus = true
  [./csv]
    type = CSV
    execute_on = final
  [../]
[]

tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7d_adapt_blocks.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 4
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
  uniform_refine = 3
[]

[MeshModifiers]
  [bottom]
    type = SubdomainBoundingBox
    location = inside
    bottom_left = '0 0 0'
    top_right = '0.304 0.01285 0'
    block_id = 1
  []
[]

[Variables]
  [pressure]
  []
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[AuxVariables]
  [velocity]
    order = CONSTANT
    family = MONOMIAL_VEC
  []
[]

[Kernels]
  [darcy_pressure]
    type = DarcyPressure
    variable = pressure
  []
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
  [heat_convection]
    type = DarcyAdvection
    variable = temperature
    pressure = pressure
  []
[]

[AuxKernels]
  [velocity]
    type = DarcyVelocity
    variable = velocity
    execute_on = timestep_end
    pressure = pressure
  []
[]

[BCs]
  [inlet]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 4000 # (Pa) From Figure 2 from paper.  First data point for 1mm spheres.
  []
  [outlet]
    type = DirichletBC
    variable = pressure
    boundary = right
    value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
  []
  [inlet_temperature]
    type = FunctionDirichletBC
    variable = temperature
    boundary = left
    function = 'if(t<0,350+50*t,350)'
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = right
  []
[]

[Materials]
  viscosity_file = data/water_viscosity.csv
  density_file = data/water_density.csv
  thermal_conductivity_file = data/water_thermal_conductivity.csv
  specific_heat_file = data/water_specific_heat.csv

  [column_bottom]
    type = PackedColumn
    block = 1
    radius = 1.15
    temperature = temperature
    fluid_viscosity_file = ${viscosity_file}
    fluid_density_file = ${density_file}
    fluid_thermal_conductivity_file = ${thermal_conductivity_file}
    fluid_specific_heat_file = ${specific_heat_file}
  []
  [column_top]
    type = PackedColumn
    block = 0
    radius = 1
    temperature = temperature
    porosity = '0.25952 + 0.7*x/0.304'
    fluid_viscosity_file = ${viscosity_file}
    fluid_density_file = ${density_file}
    fluid_thermal_conductivity_file = ${thermal_conductivity_file}
    fluid_specific_heat_file = ${specific_heat_file}
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  automatic_scaling = true

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  end_time = 100
  dt = 0.25
  start_time = -1

  steady_state_tolerance = 1e-5
  steady_state_detection = true

  [TimeStepper]
    type = FunctionDT
    function = 'if(t<0,0.1,0.25)'
  []
[]

[Adaptivity]
  marker = error_frac
  max_h_level = 3
  [Indicators]
    [temperature_jump]
      type = GradientJumpIndicator
      variable = temperature
      scale_by_flux_faces = true
    []
  []
  [Markers]
    [error_frac]
      type = ErrorFractionMarker
      coarsen = 0.025
      indicator = temperature_jump
      refine = 0.9
    []
  []
[]

[Outputs]
  [out]
    type = Exodus
    output_material_properties = true
  []
[]

test/tests/postprocessors/mms_sine/2_d_mms_sine_test.i

#2_d_mms_sine_test.i
#This is for u = sin(a*x*y*z*t)
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 8
  ny = 8
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables] #We added nodal AuxVariables
  active = 'nodal_aux'

  [./nodal_aux]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]

  active = 'diff implicit conv forcing reaction'

  [./diff]
    type = MMSDiffusion
    variable = u
  [../]

  [./implicit] #We got from MOOSE kernels
    type = MMSImplicitEuler
    variable = u
  [../]

  [./conv] #We created our own convection kernel
    type = MMSConvection
    variable = u
    x = -1
    y = 2
  [../]

  [./forcing] #We created our own forcing kernel
    type = MMSForcing
    variable = u
  [../]

  [./reaction] #We got from MOOSE kernels
    type = MMSReaction
    variable = u
  [../]
[]
[AuxKernels] #We created our own AuxKernel
  active = 'ConstantAux'

  [./ConstantAux]
    type = MMSConstantAux
    variable = nodal_aux
  [../]
[]

[BCs]
  active = 'all_u'

  [./all_u]
    type = MMSCoupledDirichletBC
    variable = u
    boundary = '0 1 2 3'
 #   value = sin(a*x*y*z*t)
  [../]
[]

[Executioner]
  type = Transient
  dt = .1
  num_steps = 5

  solve_type = 'PJFNK'
[]

[Outputs]
  file_base = 2_d_out
  exodus = true
[]

modules/porous_flow/test/tests/dirackernels/theis_rz.i

# Theis problem: Flow to single sink using BasicTHM
# SinglePhase
# RZ mesh

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmax = 100
  bias_x = 1.05
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 20E6
  [../]
[]

[PorousFlowBasicTHM]
  dictator_name = dictator
  add_darcy_aux = false
  fp = simple_fluid
  gravity = '0 0 0'
  multiply_by_density = false
  porepressure = pp
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      viscosity = 0.001
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.05
  [../]
  [./biot_mod]
    type = PorousFlowConstantBiotModulus
    fluid_bulk_modulus = 2E9
    biot_coefficient = 1.0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
  [../]
[]

[DiracKernels]
  [./sink]
    type = PorousFlowSquarePulsePointSource
    point = '0 0 0'
    mass_flux = -0.16E-3 # recall this is a volumetric flux because multiply_by_density = false in the Action, so this corresponds to a mass_flux of 0.16 kg/s/m because density=1000
    variable = pp
  [../]
[]

[VectorPostprocessors]
  [./pp]
    type = LineValueSampler
    num_points = 25
    start_point = '0 0 0'
    end_point = '100 0 0'
    sort_by = x
    variable = pp
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 200
  end_time = 1E3
  nl_abs_tol = 1e-10
[]

[Outputs]
  perf_graph = true
  [./csv]
    type = CSV
    execute_on = final
  [../]
[]

modules/tensor_mechanics/test/tests/drucker_prager/small_deform2_inner_tip.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1.5E-6*x+2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./mc]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    smoother = 4
    mc_interpolation_scheme = inner_tip
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_inner_tip
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/multiple_two_parameter_plasticity/dp_and_wp.i

# Use ComputeMultipleInelasticStress with two inelastic models: CappedDruckerPrager and CappedWeakPlane.
# The relative_tolerance and absolute_tolerance parameters are set small so that many
# Picard iterations need to be performed.
#
# The CappedDruckerPrager has tensile strength 3E2 and large cohesion,
# and the return-map sets stress = trial_stress - diag(d, d, d), for
# some d to be determined
# The CappedWeakPlane has tensile strength zero and large cohesion,
# and the return-map sets stress = diag(t - v*w/(1-v), t - v*w/(1-v), t - w)
# where t is trial stress, v is Poisson's ratio, and w is to be determined
#
# d and w are determined by demanding that the final stress shouldn't depend
# on the order of return-mapping (DP first then WP, or WP first then DP).
#
# Let the initial_stress = diag(I, I, I).
# The returned stress is diag(I - d - v*w/(1-v), I - d - v*w/(1-v), I - d - w).  This
# must obey Tr(stress) <= dp_tensile_strength, and I-d-w <= wp_tensile_strength.
#
# For I = 1E3, and v = 0.2, the solution is d = 800 and w = 200, with
# stress = diag(150, 150, 0)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    eigenstrain_names = ini_stress
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = 0
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = 0
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = 0
  [../]
[]

[AuxVariables]
  [./yield_fcn_dp]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn_wp]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_dp_auxk]
    type = MaterialStdVectorAux
    index = 1    # this is the tensile yield function - it should be zero
    property = cdp_plastic_yield_function
    variable = yield_fcn_dp
  [../]
  [./yield_fcn_wp_auxk]
    type = MaterialStdVectorAux
    index = 1    # this is the tensile yield function - it should be zero
    property = cwp_plastic_yield_function
    variable = yield_fcn_wp
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f_dp]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn_dp
  [../]
  [./f_wp]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn_wp
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 300
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    internal_constraint_tolerance = 1 # irrelevant here
    yield_function_tolerance = 1      # irrelevant here
  [../]
  [./wp_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
  [./wp_tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./wp_tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./wp_t_strength]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./wp_c_strength]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.2
    youngs_modulus = 1E7
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1E3 0 0  0 1E3 0  0 0 1E3'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    relative_tolerance = 1E-8
    inelastic_models = 'cdp cwp'
    perform_finite_strain_rotations = false
  [../]
  [./cdp]
    type = CappedDruckerPragerStressUpdate
    base_name = cdp
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-5
    tip_smoother = 1E3
    smoothing_tol = 1E3
  [../]
  [./cwp]
    type = CappedWeakPlaneStressUpdate
    base_name = cwp
    cohesion = wp_coh
    tan_friction_angle = wp_tanphi
    tan_dilation_angle = wp_tanpsi
    tensile_strength = wp_t_strength
    compressive_strength = wp_c_strength
    tip_smoother = 1E3
    smoothing_tol = 1E3
    yield_function_tol = 1E-5
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = dp_and_wp
  csv = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/except4.i

# checking for exception error messages on the edge smoothing
# here edge_smoother=5deg, which means the friction_angle must be <= 35.747
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.52359878 # 30deg
    value_residual = 0.62831853 # 36deg
    rate = 3000.0
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 1
    mc_edge_smoother = 5
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = except4
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/time_integrators/dirk/dirk-2d-heat-adap.i

[Mesh]
  type = GeneratedMesh
  dim  = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx   = 4
  ny   = 4
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value    = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value    = 1
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  start_time = 0.0
  num_steps  = 5
  dt         = 0.25

  [./TimeIntegrator]
    type = LStableDirk2
  [../]

  [./Adaptivity]
    refine_fraction  = 0.07
    coarsen_fraction = 0.
    max_h_level      = 4
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/multiapps/restart/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  ymin = 0
  xmax = 1
  ymax = 1
  nx = 10
  ny = 10
[]

[Functions]
  [./v_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./ufn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = v_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
  checkpoint = true
[]

[MultiApps]
  [./sub_app]
    app_type = MooseTestApp
    type = TransientMultiApp
    input_files = 'sub.i'
    execute_on = timestep_end
    positions = '0 -1 0'
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub_app
    source_variable = u
    variable = v
  [../]
[]

modules/porous_flow/examples/flow_through_fractured_media/coarse_3D.i

# Flow and solute transport along 2 2D eliptical fractures embedded in a 3D porous matrix
# the model domain has dimensions 1 x 1 x 0.3m and the two fracture have r1 = 0.45 and r2 = 0.2
# The fractures intersect each other and the domain boundaries on two opposite sides
# fracture aperture = 6e-4m
# fracture porosity = 6e-4m
# fracture permeability = 1.8e-11 which is based in k=3e-8 from a**2/12, and k*a = 3e-8*6e-4;
# matrix porosity = 0.1;
# matrix permeanility = 1e-20;

[Mesh]
  type = FileMesh
  file = coarse_3D.e
  block_id = '1 2 3'
  block_name = 'matrix f1 f2'

  boundary_id = '1 2 3 4'
  boundary_name = 'rf2 lf1 right_matrix left_matrix'
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pp]
  [../]
  [./tracer]
  [../]
[]

[AuxVariables]
  [./velocity_x]
    family = MONOMIAL
    order = CONSTANT
    block = 'f1 f2'
  [../]
  [./velocity_y]
    family = MONOMIAL
    order = CONSTANT
    block = 'f1 f2'
  [../]
  [./velocity_z]
    family = MONOMIAL
    order = CONSTANT
    block = 'f1 f2'
  [../]
[]

[AuxKernels]
  [./velocity_x]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = velocity_x
    component = x
    aperture = 6E-4
  [../]
  [./velocity_y]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = velocity_y
    component = y
    aperture = 6E-4
  [../]
  [./velocity_z]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = velocity_z
    component = z
    aperture = 6E-4
  [../]
[]

[ICs]
  [./pp]
    type = ConstantIC
    variable = pp
    value = 1e6
  [../]
  [./tracer]
    type = ConstantIC
    variable = tracer
    value = 0
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    value = 0
    variable = tracer
    boundary = rf2
  [../]
  [./bottom]
    type = DirichletBC
    value = 1
    variable = tracer
    boundary = lf1
  [../]
  [./ptop]
    type = DirichletBC
    variable = pp
    boundary =  rf2
    value = 1e6
  [../]
  [./pbottom]
    type = DirichletBC
    variable = pp
    boundary = lf1
    value = 1.02e6
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
  [../]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = pp
    disp_trans = 0
    disp_long = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = tracer
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = tracer
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = tracer
    disp_trans = 0
    disp_long = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp tracer'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'tracer'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro1]
    type = PorousFlowPorosityConst
    porosity = 6e-4   # = a * phif
    block = 'f1 f2'
  [../]
  [./diff1]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1.e-9 1.e-9'
    tortuosity = 1.0
    block = 'f1 f2'
  [../]
  [./poro2]
    type = PorousFlowPorosityConst
    porosity = 0.1
    block = 'matrix'
  [../]
  [./diff2]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1.e-9 1.e-9'
    tortuosity = 0.1
    block = 'matrix'
  [../]
  [./relp]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./permeability1]
    type = PorousFlowPermeabilityConst
    permeability = '1.8e-11 0 0 0 1.8e-11 0 0 0 1.8e-11'   # 1.8e-11 = a * kf
    block = 'f1 f2'
  [../]
  [./permeability2]
    type = PorousFlowPermeabilityConst
    permeability = '1e-20 0 0 0 1e-20 0 0 0 1e-20'
    block = 'matrix'
  [../]
[]

[Preconditioning]
  active = basic
  [./mumps_is_best_for_parallel_jobs]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
  [./basic]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2             '
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 20
  dt = 1
[]

[VectorPostprocessors]
  [./xmass]
    type = LineValueSampler
    start_point = '-0.5 0 0'
    end_point = '0.5 0 0'
    sort_by = x
    num_points = 41
    variable = tracer
    outputs = csv
  [../]
[]

[Outputs]
  [./csv]
    type = CSV
    execute_on = 'final'
  [../]
[]

test/tests/functions/image_function/flip_dual.i

[Mesh]
  uniform_refine = 1
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 20
    ny = 40
    ymax = 2
  []
  [./top]
    type = SubdomainBoundingBoxGenerator
    input = gen
    top_right = '1 2 0'
    bottom_left = '0 1 0'
    block_id = 1
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./top]
    type = ImageFunction
    origin = '0 1 0'
    file_base = stack/test
    file_suffix = png
    flip_y = true
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    dimensions = '1 1 0'
  [../]
  [./bottom]
    type = ImageFunction
    origin = '0 0 0'
    file_base = stack/test
    file_suffix = png
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    dimensions = '1 1 0'
  [../]
[]

[ICs]
  [./top_ic]
    function = top
    variable = u
    type = FunctionIC
    block = 1
  [../]
  [./bottom_ic]
    function = bottom
    variable = u
    type = FunctionIC
    block = 0
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_mesh_function_transfer/tosub_target_displaced.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    positions = '.1 .1 0 0.6 0.6 0 0.6 0.1 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = tosub_sub.i
    execute_on = timestep_end
  [../]
[]

[Transfers]
  [./to_sub]
    source_variable = u
    direction = to_multiapp
    variable = transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
    displaced_target_mesh = true
  [../]
  [./elemental_to_sub]
    source_variable = u
    direction = to_multiapp
    variable = elemental_transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
    displaced_target_mesh = true
  [../]
[]

modules/porous_flow/test/tests/gravity/grav02d.i

# Checking that gravity head is established in the transient situation when 0<=saturation<=1 (note the less-than-or-equal-to).
# 2phase (PP), 2components, vanGenuchten, constant fluid bulk-moduli for each phase, constant viscosity, constant permeability, Corey relative perm.
# A boundary condition enforces porepressures at the right boundary
# For better agreement with the analytical solution (ana_pp), just increase nx

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = -1
  xmax = 0
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    x = '1E-3 1E-2 1E-1 2E-1'
    y = '1E-3 1E-2 0.2E-1 1E-1'
  [../]
[]

[Variables]
  [./ppwater]
    initial_condition = 0
  [../]
  [./ppgas]
    initial_condition = 0.5
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]

[BCs]
  [./ppwater]
    type = DirichletBC
    boundary = right
    variable = ppwater
    value = 0
  [../]
  [./ppgas]
    type = DirichletBC
    boundary = right
    variable = ppgas
    value = 0.5
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
    gravity = '-1 0 0'
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = ppgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = ppgas
    gravity = '-1 0 0'
  [../]
[]

[Functions]
  [./ana_ppwater]
    type = ParsedFunction
    vars = 'g B p0 rho0'
    vals = '1 2 pp_water_top 1'
    value = '-B*log(exp(-p0/B)+g*rho0*x/B)' # expected pp at base
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.2
      density0 = 1
      viscosity = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.1
      viscosity = 0.5
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0  0 2 0  0 0 3'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 1
  [../]
[]

[Postprocessors]
  [./pp_water_top]
    type = PointValue
    variable = ppwater
    point = '0 0 0'
  [../]
  [./pp_water_base]
    type = PointValue
    variable = ppwater
    point = '-1 0 0'
  [../]
  [./pp_water_analytical]
    type = FunctionValuePostprocessor
    function = ana_ppwater
    point = '-1 0 0'
  [../]
  [./ppwater_00]
    type = PointValue
    variable = ppwater
    point = '0 0 0'
  [../]
  [./ppwater_01]
    type = PointValue
    variable = ppwater
    point = '-0.1 0 0'
  [../]
  [./ppwater_02]
    type = PointValue
    variable = ppwater
    point = '-0.2 0 0'
  [../]
  [./ppwater_03]
    type = PointValue
    variable = ppwater
    point = '-0.3 0 0'
  [../]
  [./ppwater_04]
    type = PointValue
    variable = ppwater
    point = '-0.4 0 0'
  [../]
  [./ppwater_05]
    type = PointValue
    variable = ppwater
    point = '-0.5 0 0'
  [../]
  [./ppwater_06]
    type = PointValue
    variable = ppwater
    point = '-0.6 0 0'
  [../]
  [./ppwater_07]
    type = PointValue
    variable = ppwater
    point = '-0.7 0 0'
  [../]
  [./ppwater_08]
    type = PointValue
    variable = ppwater
    point = '-0.8 0 0'
  [../]
  [./ppwater_09]
    type = PointValue
    variable = ppwater
    point = '-0.9 0 0'
  [../]
  [./ppwater_10]
    type = PointValue
    variable = ppwater
    point = '-1 0 0'
  [../]
  [./ppgas_00]
    type = PointValue
    variable = ppgas
    point = '0 0 0'
  [../]
  [./ppgas_01]
    type = PointValue
    variable = ppgas
    point = '-0.1 0 0'
  [../]
  [./ppgas_02]
    type = PointValue
    variable = ppgas
    point = '-0.2 0 0'
  [../]
  [./ppgas_03]
    type = PointValue
    variable = ppgas
    point = '-0.3 0 0'
  [../]
  [./ppgas_04]
    type = PointValue
    variable = ppgas
    point = '-0.4 0 0'
  [../]
  [./ppgas_05]
    type = PointValue
    variable = ppgas
    point = '-0.5 0 0'
  [../]
  [./ppgas_06]
    type = PointValue
    variable = ppgas
    point = '-0.6 0 0'
  [../]
  [./ppgas_07]
    type = PointValue
    variable = ppgas
    point = '-0.7 0 0'
  [../]
  [./ppgas_08]
    type = PointValue
    variable = ppgas
    point = '-0.8 0 0'
  [../]
  [./ppgas_09]
    type = PointValue
    variable = ppgas
    point = '-0.9 0 0'
  [../]
  [./ppgas_10]
    type = PointValue
    variable = ppgas
    point = '-1 0 0'
  [../]
[]

[Preconditioning]
  active = andy
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
  end_time = 1.0
[]

[Outputs]
  [./csv]
    type = CSV
    execute_on = 'initial final'
    file_base = grav02d
  [../]
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test10.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 5
    ny = 5
    xmin = 0
    xmax = 5
    ymin = 0
    ymax = 5
  []

  [./left]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    bottom_left = '2 2 0'
    top_right = '3 3 1'
  [../]
  [./right]
    type = SubdomainBoundingBoxGenerator
    input = left
    block_id = 2
    bottom_left = '3 2 0'
    top_right = '4 3 1'
  [../]
  [./interior_sideset]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = 1
    paired_block = 2
    input = right
    new_boundary = interior_ss
  [../]
  [./new_block_number]
    type = SubdomainBoundingBoxGenerator
    block_id = 3
    bottom_left = '0 0 0'
    top_right = '4 4 1'
    input = 'interior_sideset'
  [../]
  [./ed0]
    type = BlockDeletionGenerator
    block_id = 3
    input = 'new_block_number'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/gravity_head_2/gh_lumped_17.i

# unsaturated = false
# gravity = true
# supg = true
# transient = true
# lumped = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 0.5E-3'
  gravity = '-1 0 0'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 1
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-15 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh_lumped_17
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/single_pnt_2d/single_point_2d_contact_line_search.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = single_point_2d.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./appl_disp]
    type = PiecewiseLinear
    x = '0 0.001  0.101'
    y = '0 0.0   -0.10'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./incslip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./incslip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = appl_disp
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = -0.002001
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e9
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputePlaneFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputePlaneFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = NodalVariableValue
    nodeid = 5
    variable = disp_x
  [../]
  [./disp_y]
    type = NodalVariableValue
    nodeid = 5
    variable = disp_y
  [../]
  [./inc_slip_x]
    type = NodalVariableValue
    nodeid = 5
    variable = inc_slip_x
  [../]
  [./inc_slip_y]
    type = NodalVariableValue
    nodeid = 5
    variable = inc_slip_y
  [../]
  [./accum_slip_x]
    type = NodalVariableValue
    nodeid = 5
    variable = accum_slip_x
  [../]
  [./accum_slip_y]
    type = NodalVariableValue
    nodeid = 5
    variable = accum_slip_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package -mat_superlu_dist_iterrefine'
  petsc_options_value = 'lu    superlu_dist 1'

  line_search = 'contact'
  contact_line_search_allowed_lambda_cuts = 0
  contact_line_search_ltol = 0.5

  l_max_its = 15
  nl_max_its = 10
  dt = 0.001
  end_time = 0.002
  num_steps = 10000
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-8
  dtmin = 0.001
  l_tol = 1e-3
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
  csv = true
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = frictionless
    system = constraint
    formulation = kinematic
    penalty = 1e12
    normalize_penalty = true
    tangential_tolerance = 1e-3
  [../]
[]

test/tests/bcs/periodic/auto_dir_repeated_id.i

[Mesh]
  type = FileMesh
  file = auto_dir_repeated_id.e
  dim = 3
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dot]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./z_all]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = 'z_all'
    function = 'z'
  [../]

  [./Periodic]
    [./all]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = .1
  num_steps = 1
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/userobjects/shape_element_user_object/jacobian_test.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = (x-0.5)^2
    [../]
  [../]
  [./v]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = (x-0.5)^2
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = (x-0.5)^2
    [../]
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./shape_w]
    type = ExampleShapeElementKernel2
    user_object = example_uo
    v = v
    u = u
    variable = w
  [../]
  [./time_w]
    type = TimeDerivative
    variable = w
  [../]
  [./time_u]
    type = TimeDerivative
    variable = u
  [../]
  [./time_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[UserObjects]
  [./example_uo]
    type = ExampleShapeElementUserObject
    u = u
    v = v
    # as this userobject computes quantities for both the residual AND the jacobian
    # it needs to have these execute_on flags set.
    execute_on = 'linear nonlinear'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    #off_diag_row =    'w w'
    #off_diag_column = 'v u'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options = '-snes_test_display'
  petsc_options_iname = '-snes_type'
  petsc_options_value = 'test'
  dt = 0.1
  num_steps = 2
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto02.i

# checking jacobian for linear plasticity (weak_plane_tensile)
# with hardening
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '1 2'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1 2 3  2 -4 -5  3 -5 2'
    eigenstrain_name = ini_stress
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    tangent_operator = linear
    plastic_models = wpt
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-5
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/transfers/multiapp_userobject_transfer/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 8
  xmax = 0.1
  ymax = 0.5
[]

[Variables]
  [./u]
    initial_condition = 1
  [../]
[]

[AuxVariables]
  [./layered_average_value]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./axial_force]
    type = ParsedFunction
    value = 1000*y
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = axial_force
  [../]
[]

[AuxKernels]
  [./layered_aux]
    type = SpatialUserObjectAux
    variable = layered_average_value
    execute_on = timestep_end
    user_object = layered_average
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[UserObjects]
  [./layered_average]
    type = LayeredAverage
    variable = u
    direction = y
    num_layers = 4
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.001

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Problem]
  coord_type = rz
  type = FEProblem
[]

modules/porous_flow/test/tests/jacobian/pls03.i

# PorousFlowPiecewiseLinearSink with 2-phase, 3-components
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 2
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph0_sp1]
  [../]
  [./massfrac_ph1_sp0]
  [../]
  [./massfrac_ph1_sp1]
  [../]
[]


[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp1]
    type = RandomIC
    variable = massfrac_ph0_sp1
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp1]
    type = RandomIC
    variable = massfrac_ph1_sp1
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./dummy_ppwater]
    type = TimeDerivative
    variable = ppwater
  [../]
  [./dummy_ppgas]
    type = TimeDerivative
    variable = ppgas
  [../]
  [./dummy_m00]
    type = TimeDerivative
    variable = massfrac_ph0_sp0
  [../]
  [./dummy_m01]
    type = TimeDerivative
    variable = massfrac_ph0_sp1
  [../]
  [./dummy_m10]
    type = TimeDerivative
    variable = massfrac_ph1_sp0
  [../]
  [./dummy_m11]
    type = TimeDerivative
    variable = massfrac_ph1_sp1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1.4
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
[]

[BCs]
  [./flux_w]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'left'
    pt_vals = '-1 -0.5 0'
    multipliers = '1 2 4'
    variable = ppwater
    mass_fraction_component = 0
    fluid_phase = 0
    use_relperm = true
    use_mobility = true
    flux_function = 'x*y'
  [../]
  [./flux_g]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'top'
    pt_vals = '0 0.5 1'
    multipliers = '1 -2 4'
    mass_fraction_component = 0
    variable = ppgas
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '-x*y'
  [../]
  [./flux_1]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'right'
    pt_vals = '0 0.5 1'
    multipliers = '1 3 4'
    mass_fraction_component = 1
    variable = massfrac_ph0_sp0
    fluid_phase = 0
    use_relperm = true
    use_mobility = true
  [../]
  [./flux_2]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'back top'
    pt_vals = '0 0.5 1'
    multipliers = '0 1 -3'
    mass_fraction_component = 1
    variable = massfrac_ph1_sp0
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '0.5*x*y'
  [../]
  [./flux_3]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'right'
    pt_vals = '0 0.5 1'
    multipliers = '1 3 4'
    mass_fraction_component = 2
    variable = ppwater
    fluid_phase = 0
    use_relperm = true
    use_mobility = true
  [../]
  [./flux_4]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'back top'
    pt_vals = '0 0.5 1'
    multipliers = '0 1 -3'
    mass_fraction_component = 2
    variable = massfrac_ph1_sp0
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '-0.5*x*y'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 2
[]

[Outputs]
  file_base = pls03
[]

test/tests/transfers/multiapp_copy_transfer/linear_lagrange_from_sub/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = sub.i
    execute_on = initial
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppCopyTransfer
    direction = from_multiapp
    source_variable = u
    variable = u
    multi_app = sub
  [../]
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/interaction_integral/interaction_integral_3d_rot.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = crack3d_rot.e
#  partitioner = centroid
#  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '0 0 -1'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

#  [./pin_x]
#    type = DirichletBC
#    variable = disp_x
#    boundary = 200
#    value = 0.0
#  [../]
#
#  [./pin_y]
#    type = DirichletBC
#    variable = disp_y
#    boundary = 200
#    value = 0.0
#  [../]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

 # [./nocrack_y]
 #   type = DirichletBC
 #   variable = disp_y
 #   boundary = 600
 #   value = 0.0
 # [../]

# [./no_x]
#   type = DirichletBC
#   variable = disp_x
#   boundary = 500
#   value = 0.0
# [../]
# [./no_y]
#   type = DirichletBC
#   variable = disp_y
#   boundary = 500
#   value = 0.0
# [../]
  [./no_z]
    type = DirichletBC
    variable = disp_x
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_x
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_z
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = interaction_integral_3d_rot_out
  exodus = true
  csv = true
[]

modules/navier_stokes/test/tests/ins/jacobian_test/jacobian_test.i

# This input file tests the jacobians of many of the INS kernels
[GlobalParams]
  gravity = '0 0 0'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 3.0
  ymin = 0
  ymax = 1.5
  nx = 1
  ny = 1
  elem_type = QUAD9
[]

[Variables]
  [./vel_x]
    order = SECOND
    family = LAGRANGE
  [../]
  [./vel_y]
    order = SECOND
    family = LAGRANGE
  [../]
  [./p]
    order = FIRST
    family = LAGRANGE
  [../]
  [./temp]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./mass]
    type = INSMass
    variable = p
    u = vel_x
    v = vel_y
    p = p
  [../]
  [./x_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_x
    u = vel_x
    v = vel_y
    p = p
    component = 0
    integrate_p_by_parts = false
  [../]
  [./y_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_y
    u = vel_x
    v = vel_y
    p = p
    component = 1
    integrate_p_by_parts = false
  [../]
  [./x_mom_time]
    type = INSMomentumTimeDerivative
    variable = vel_x
  [../]
  [./y_mom_time]
    type = INSMomentumTimeDerivative
    variable = vel_y
  [../]
  [./temp]
    type = INSTemperature
    variable = temp
    u = vel_x
    v = vel_y
  [../]
  [./temp_time_deriv]
    type = INSTemperatureTimeDerivative
    variable = temp
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'rho mu k cp'
    prop_values = '0.5 1.5 0.7 1.3'
  [../]
[]

[Preconditioning]
  [./SMP_PJFNK]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  solve_type = NEWTON
  type = Transient
  num_steps = 1
[]

[ICs]
  [./p]
    type = RandomIC
    variable = p
    min = 0.5
    max = 1.5
  [../]
  [./vel_x]
    type = RandomIC
    variable = vel_x
    min = 0.5
    max = 1.5
  [../]
  [./vel_y]
    type = RandomIC
    variable = vel_y
    min = 0.5
    max = 1.5
  [../]
  [./temp]
    type = RandomIC
    variable = temp
    min = 0.5
    max = 1.5
  [../]
[]

test/tests/kernels/ad_transient_diffusion/ad_transient_diffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = ADTimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/functions/image_function/flip.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file_base = stack/test
    file_suffix = png
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    flip_x = true
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/picard/pseudo_transient_picard_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./time]
    type = CoefTimeDerivative
    variable = v
    Coefficient = 0.1
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Postprocessors]
  [./vnorm]
    type = ElementL2Norm
    variable = v
  [../]
[]

[Executioner]
  type = Transient
  end_time = 10
  nl_abs_tol = 1e-12
  steady_state_detection = true
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/mechanical_constraint/glued_penalty.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[XFEM]
  geometric_cut_userobjects = 'line_seg_cut_uo'
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 11
  ny = 11
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '1.0  0.5  0.0  0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    planar_formulation = plane_strain
    add_variables = true
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0  50   100'
    y='0  0.02 0.1'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./topx]
    type = DirichletBC
    boundary = top
    variable = disp_x
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_y
    function = pull
  [../]
[]

[Constraints]
  [./disp_x]
    type = XFEMSingleVariableConstraint
    variable = disp_x
    use_penalty = true
    alpha = 1.0e8
    use_displaced_mesh = true
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
  [./disp_y]
    type = XFEMSingleVariableConstraint
    variable = disp_y
    use_penalty = true
    alpha = 1.0e8
    use_displaced_mesh = true
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = 0
  [../]

  [./_elastic_strain]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-9

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.0
  num_steps = 5000

  max_xfem_update = 1
[]

[Outputs]
  exodus = true
  execute_on = timestep_end
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/energy_conservation/heat01.i

# checking that the heat-energy postprocessor correctly calculates the energy
# 0phase, constant porosity
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 3
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./temp]
  [../]
[]

[ICs]
  [./tinit]
    type = FunctionIC
    function = '100*x'
    variable = temp
  [../]
[]

[Kernels]
  [./dummy]
    type = TimeDerivative
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp'
    number_fluid_phases = 0
    number_fluid_components = 0
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 2.2
    density = 0.5
  [../]
[]

[Postprocessors]
  [./total_heat]
    type = PorousFlowHeatEnergy
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1 1 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = heat01
  csv = true
[]

test/tests/geomsearch/2d_moving_penetration/pl_test3qns.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-10
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test3qns_out
  exodus = true
[]

modules/phase_field/test/tests/grain_tracker_test/grain_tracker_nodal.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  nz = 0
  xmax = 1000
  ymax = 1000
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 10
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    grain_num = 10 # Number of grains
    coloring_algorithm = bt # bt will assign one grain to each op if they are the same
    rand_seed = 1
  [../]
  [./grain_tracker]
    type = GrainTracker
    threshold = 0.5
    connecting_threshold = 0.2
    # Note: This is here for demonstration purposes
    # use elemental for most simulations
    flood_entity_type = NODAL
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
    order = FIRST
    family = LAGRANGE
  [../]
  [./var_indices]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
  [../]
[]

[BCs]
[]

[Materials]
  [./CuGrGr]
    type = GBEvolution
    T = 500 # K
    wGB = 100 # nm
    GBmob0 = 2.5e-6
    Q = 0.23
    GBenergy = 0.708
    molar_volume = 7.11e-6
  [../]
[]

[Postprocessors]
  [./DOFs]
    type = NumDOFs
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'
  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 2
  dt = 100.0
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/PolynomialFreeEnergy/direct_order8_test.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmax = 125
[]

[GlobalParams]
  polynomial_order = 8
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 60.0
    invalue = 1.0
    outvalue = 0.1
    int_width = 60.0
    variable = c
  [../]
[]

[Kernels]
  [./local_energy]
    type = CahnHilliard
    variable = c
    f_name = F
  [../]
  [./gradient_energy]
    type = CHInterface
    variable = c
    mob_name = M
    kappa_name = kappa
  [../]
  [./cdot]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./Copper]
    type = PFParamsPolyFreeEnergy
    c = c
    T = 1000 # K
    int_width = 30.0
    length_scale = 1.0e-9
    time_scale = 1.0e-9
    D0 = 3.1e-5 # m^2/s, from Brown1980
    Em = 0.71 # in eV, from Balluffi1978 Table 2
    Ef = 1.28 # in eV, from Balluffi1978 Table 2
    surface_energy = 0.7 # Total guess
  [../]
  [./free_energy]
    type = PolynomialFreeEnergy
    c = c
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = NEWTON
  petsc_options_iname = -pc_type
  petsc_options_value = lu

  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8

  start_time = 0.0
  num_steps = 100
  dt = 4
[]

[Outputs]
  exodus = true
[]

test/tests/kernels/coefficient_time_derivative/coefficient_time_derivative_diffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = CoefTimeDerivative
    variable = u
    Coefficient = 0.1
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/grain_texture/EulerAngleProvider2RGBAux_bicrystal.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 12
  xmax = 1000
  ymax = 300
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalBoundingBoxIC]
      x1 = 0
      y1 = 0
      x2 = 500
      y2 = 1000
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./active_bounds_elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./rgb]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./bnds_aux]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    execute_on = 'initial timestep_begin'
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    execute_on = 'initial timestep_begin'
    field_display = VARIABLE_COLORING
  [../]
  [./active_bounds_elemental]
    type = FeatureFloodCountAux
    variable = active_bounds_elemental
    field_display = ACTIVE_BOUNDS
    execute_on = 'initial timestep_begin'
    flood_counter = grain_tracker
  [../]
  [./rgb]
    type = EulerAngleProvider2RGBAux
    variable = rgb
    euler_angle_provider = euler_angle_file
    grain_tracker = grain_tracker
    crystal_structure = cubic
    execute_on = 'initial timestep_end'
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    block = 0
    T = 500 # K
    wGB = 75 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
    time_scale = 1.0e-6
  [../]
[]

[UserObjects]
  [./grain_tracker]
    type = FauxGrainTracker
    connecting_threshold = 0.05
    compute_var_to_feature_map = true
    flood_entity_type = elemental
    execute_on = 'initial timestep_begin'
    outputs = none
  [../]
  [./euler_angle_file]
    type = EulerAngleFileReader
    file_name = test.tex
  [../]
[]

[Postprocessors]
  [./gr0_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr0
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -pc_hypre_boomeramg_strong_threshold'
  petsc_options_value = 'hypre boomeramg 31 0.7'

  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 30
  nl_rel_tol = 1e-9

  start_time = 0.0
  num_steps = 3
  dt = 0.2
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/finite_strain_elastic/finite_strain_fake_plastic.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = '0.01 * t'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./stress]
    # note there are no plastic_models so this is actually elasticity
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-5
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.05
  num_steps = 10
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_projection_transfer/tosub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 3
  ymin = 0
  ymax = 3
  nx = 3
  ny = 3
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u_nodal]
  [../]
  [./u_elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x_elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x_nodal]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = v
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = v
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'NEWTON'
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update23.i

# MC update version, with only MohrCoulomb, cohesion=40, friction angle = 35deg, psi = 5deg, smoothing_tol = 0.5
# Tensile strength = 1MPa
# Lame lambda = 1E3.  Lame mu = 1.3E3

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 4E1
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 0.5
    shear_modulus = 1.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '10 12 -14  12 5 20  -14 20 8'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/xfem/test/tests/corner_nodes_cut/corner_edge_cut.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo1]
    type = LineSegmentCutUserObject
    cut_data = '-0.0 0.5 0.5 0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./line_seg_cut_uo2]
    type = LineSegmentCutUserObject
    cut_data = '0.5 0.5 1.0 0.7'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
  [../]
[]

[BCs]
  [./top_x]
    type = DirichletBC
    boundary = 2
    variable = disp_x
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.1
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = -0.1
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/examples/tutorial/13.i

# Example of reactive transport model with dissolution of dolomite
#
# The equilibrium system has 5 primary species (Variables) and
# 5 secondary species (PorousFlowMassFractionAqueousEquilibrium).
# Some of the equilibrium constants have been chosen rather arbitrarily.
#
# Equilibrium reactions
# H+  + HCO3-                      = CO2(aq)
# -H+ + HCO3-                      = CO32-
#       HCO3- + Ca2+               = CaHCO3+
#       HCO3-        + Mg2+        = MgHCO3+
#       HCO3-               + Fe2+ = FeHCO3+
#
# The kinetic reaction that dissolves dolomite involves all 5 primary species.
#
# -2H+ + 2HCO3- + Ca2+ + 0.8Mg2+ + 0.2Fe2+ = CaMg0.8Fe0.2(CO3)2
#
# The initial concentration of precipitated dolomite is high, so it starts
# to dissolve immediately, increasing the concentrations of the primary species.
#
# Only single-phase, fully saturated physics is used.
# The pressure gradient is fixed, so that the Darcy velocity is 0.1m/s.
#
# Primary species are injected from the left side, and they flow to the right.
# Less dolomite dissolution therefore occurs on the left side (where
# the primary species have higher concentration).
#
# This test is more fully documented in tutorial_13
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmax = 1
[]

[Variables]
  [./h+]
  [../]
  [./hco3-]
  [../]
  [./ca2+]
  [../]
  [./mg2+]
  [../]
  [./fe2+]
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 2.19E6
  [../]
  [./eqm_k1]
    initial_condition = 4.73E-11
  [../]
  [./eqm_k2]
    initial_condition = 0.222
  [../]
  [./eqm_k3]
    initial_condition = 1E-2
  [../]
  [./eqm_k4]
    initial_condition = 1E-3
  [../]
  [./kinetic_k]
    initial_condition = 326.2
  [../]
  [./pressure]
  [../]
  [./dolomite]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./dolomite_initial]
    initial_condition = 1E-7
  [../]
[]

[AuxKernels]
  [./dolomite]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = dolomite
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[ICs]
  [./pressure_ic]
    type = FunctionIC
    variable = pressure
    function = '(1 - x) * 1E6'
  [../]
  [./h+_ic]
    type = BoundingBoxIC
    variable = h+
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 0.25
    inside = 5.0e-2
    outside = 1.0e-6
  [../]
  [./hco3_ic]
    type = BoundingBoxIC
    variable = hco3-
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 0.25
    inside = 5.0e-2
    outside = 1.0e-6
  [../]
  [./ca2_ic]
    type = BoundingBoxIC
    variable = ca2+
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 0.25
    inside = 5.0e-2
    outside = 1.0e-6
  [../]
  [./mg2_ic]
    type = BoundingBoxIC
    variable = mg2+
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 0.25
    inside = 5.0e-2
    outside = 1.0e-6
  [../]
  [./fe2_ic]
    type = BoundingBoxIC
    variable = fe2+
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 0.25
    inside = 5.0e-2
    outside = 1.0e-6
  [../]
[]

[Kernels]
  [./h+_ie]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = h+
  [../]
  [./h+_conv]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = h+
  [../]
  [./predis_h+]
    type = PorousFlowPreDis
    variable = h+
    mineral_density = 2875.0
    stoichiometry = -2
  [../]
  [./hco3-_ie]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = hco3-
  [../]
  [./hco3-_conv]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = hco3-
  [../]
  [./predis_hco3-]
    type = PorousFlowPreDis
    variable = hco3-
    mineral_density = 2875.0
    stoichiometry = 2
  [../]
  [./ca2+_ie]
    type = PorousFlowMassTimeDerivative
    fluid_component = 2
    variable = ca2+
  [../]
  [./ca2+_conv]
    type = PorousFlowAdvectiveFlux
    fluid_component = 2
    variable = ca2+
  [../]
  [./predis_ca2+]
    type = PorousFlowPreDis
    variable = ca2+
    mineral_density = 2875.0
    stoichiometry = 1
  [../]
  [./mg2+_ie]
    type = PorousFlowMassTimeDerivative
    fluid_component = 3
    variable = mg2+
  [../]
  [./mg2+_conv]
    type = PorousFlowAdvectiveFlux
    fluid_component = 3
    variable = mg2+
  [../]
  [./predis_mg2+]
    type = PorousFlowPreDis
    variable = mg2+
    mineral_density = 2875.0
    stoichiometry = 0.8
  [../]
  [./fe2+_ie]
    type = PorousFlowMassTimeDerivative
    fluid_component = 4
    variable = fe2+
  [../]
  [./fe2+_conv]
    type = PorousFlowAdvectiveFlux
    fluid_component = 4
    variable = fe2+
  [../]
  [./predis_fe2+]
    type = PorousFlowPreDis
    variable = fe2+
    mineral_density = 2875.0
    stoichiometry = 0.2
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'h+ hco3- ca2+ mg2+ fe2+'
    number_fluid_phases = 1
    number_fluid_components = 6
    number_aqueous_equilibrium = 5
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      viscosity = 1E-3
    [../]
  [../]
[]

[BCs]
  [./hco3-_left]
    type = DirichletBC
    variable = hco3-
    boundary = left
    value = 5E-2
  [../]
  [./h+_left]
    type = DirichletBC
    variable = h+
    boundary = left
    value = 5E-2
  [../]
  [./ca2+_left]
    type = DirichletBC
    variable = ca2+
    boundary = left
    value = 5E-2
  [../]
  [./mg2+_left]
    type = DirichletBC
    variable = mg2+
    boundary = left
    value = 5E-2
  [../]
  [./fe2+_left]
    type = DirichletBC
    variable = fe2+
    boundary = left
    value = 5E-2
  [../]
  [./hco3-_right]
    type = DirichletBC
    variable = hco3-
    boundary = right
    value = 1E-6
  [../]
  [./h+_right]
    type = DirichletBC
    variable = h+
    boundary = right
    value = 1e-6
  [../]
  [./ca2+_right]
    type = DirichletBC
    variable = ca2+
    boundary = right
    value = 1E-6
  [../]
  [./mg2+_right]
    type = DirichletBC
    variable = mg2+
    boundary = right
    value = 1E-6
  [../]
  [./fe2+_right]
    type = DirichletBC
    variable = fe2+
    boundary = right
    value = 1E-6
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 298.15
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./equilibrium_massfrac]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'h+ hco3- ca2+ mg2+ fe2+'
    num_reactions = 5
    equilibrium_constants = 'eqm_k0 eqm_k1 eqm_k2 eqm_k3 eqm_k4'
    primary_activity_coefficients = '1 1 1 1 1'
    secondary_activity_coefficients = '1 1 1 1 1'
    reactions = '1 1 0 0 0
                -1 1 0 0 0
                 0 1 1 0 0
                 0 1 0 1 0
                 0 1 0 0 1'
  [../]
  [./kinetic]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'h+ hco3- ca2+ mg2+ fe2+'
    num_reactions = 1
    equilibrium_constants = kinetic_k
    primary_activity_coefficients = '1 1 1 1 1'
    reactions = '-2 2 1 0.8 0.2'
    specific_reactive_surface_area = '1.2E-8'
    kinetic_rate_constant = '3E-4'
    activation_energy = '1.5e4'
    molar_volume = 64365.0
    gas_constant = 8.314
    reference_temperature = 298.15
  [../]
  [./dolomite_conc]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = dolomite_initial
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-10 0 0 0 1E-10 0 0 0 1E-10'
  [../]
  [./relp]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.1
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Outputs]
  print_linear_residuals = false
  perf_graph = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_simple_linear/linear-mixed.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./stress_x]
    type = StressDivergenceTensors
    component = 0
    variable = disp_x
  [../]
  [./stress_y]
    type = StressDivergenceTensors
    component = 1
    variable = disp_y
  [../]
  [./stress_z]
    type = StressDivergenceTensors
    component = 2
    variable = disp_z
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0.1
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeSmallStrain
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
  file_base = "linear-out"
[]

modules/porous_flow/test/tests/jacobian/mass01.i

# 1phase
# vanGenuchten, constant-bulk density, constant porosity, 1component
# fully saturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1
  [../]
[]


[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 2
[]

[Outputs]
  exodus = false
[]

test/tests/outputs/nemesis/nemesis_scalar.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 4
[]


[Variables]
  [./f]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
  [./f_times_mult]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
[]

[ScalarKernels]
  [./dT]
    type = CoupledODETimeDerivative
    variable = f
    v = f_times_mult
  [../]

  [./src]
    type = ParsedODEKernel
    variable = f
    function = '-1'
  [../]

  [./f_times_mult_1]
    type = ParsedODEKernel
    variable = f_times_mult
    function = 'f_times_mult'
  [../]

  [./f_times_mult_2]
    type = ParsedODEKernel
    variable = f_times_mult
    function = '-f * g'
    args = 'f g'
  [../]
[]

[AuxVariables]
  [./g]
    family = SCALAR
    order = FIRST
  [../]
[]

[Functions]
  [./function_g]
    type = ParsedFunction
    value = '(1 + t)'
  [../]
[]

[AuxScalarKernels]
  [./set_g]
    type = FunctionScalarAux
    function = function_g
    variable = g
    execute_on = 'linear initial'
  [../]
[]

[Postprocessors]
  [./f]
    type = ScalarVariable
    variable = f
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 3
  nl_abs_tol = 1e-9
[]

[Outputs]
  nemesis = true
[]

test/tests/functions/image_function/threshold_adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file_base = stack/test
    file_suffix = png
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    threshold = 2.7e4
    upper_value = 1
    lower_value = -1
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Adaptivity]
  max_h_level = 5
  initial_steps = 5
  initial_marker = marker
  [./Indicators]
    [./indicator]
      type = GradientJumpIndicator
      variable = u
    [../]
  [../]
  [./Markers]
    [./marker]
      type = ErrorFractionMarker
      indicator = indicator
      refine = 0.9
    [../]
  [../]
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/solid_mechanics_basic/crack_propagation_2d.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
  use_crack_growth_increment = true
  crack_growth_increment = 0.2
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 11
  ny = 11
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '1.0  0.5  0.7  0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./xfem_marker_uo]
    type = XFEMRankTwoTensorMarkerUserObject
    execute_on = timestep_end
    tensor = stress
    scalar_type = MaxPrincipal
    threshold = 5e+1
    average = true
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    planar_formulation = plane_strain
    add_variables = true
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0  50   100'
    y='0  0.02 0.1'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./topx]
    type = DirichletBC
    boundary = top
    variable = disp_x
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_y
    function = pull
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = 0
  [../]

  [./_elastic_strain]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-9

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.0
  num_steps = 5000

  max_xfem_update = 1
[]

[Outputs]
  file_base = crack_propagation_2d_out
  exodus = true
  execute_on = timestep_end
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/tensor_mechanics/test/tests/visco/gen_kv_driving.i

# Represents a unique Maxwell module with E = 10GPa and eta = 10 days with an imposed eigenstrain alpha = 0.001.
# The behavior is set up so that the creep strain is driven by both the elastic stress and the internal
# stress induced by the eigenstrain (E * alpha).
#
# In this test, the specimen is free of external stress (sigma = 0) so the creep deformation only derives from
# the eigenstrain. The total strain to be expected is:
#     epsilon = alpha * (1 + t / eta)
# Both the stress and the elastic strain are 0.
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    variable = stress_xx
    rank_two_tensor = stress
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./strain_xx]
    type = RankTwoAux
    variable = strain_xx
    rank_two_tensor = total_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    variable = creep_strain_xx
    rank_two_tensor = creep_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
[]

[Materials]
  [./eigen]
    type = ComputeEigenstrain
    eigenstrain_name = eigen_true
    eigen_base = '1e-3 1e-3 1e-3 0 0 0'
  [../]
  [./kelvin_voigt]
    type = GeneralizedKelvinVoigtModel
    creep_modulus = ''
    creep_viscosity = '10'
    poisson_ratio = 0.2
    young_modulus = 10e9
    driving_eigenstrain = eigen_true
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'creep'
  [../]
  [./creep]
    type = LinearViscoelasticStressUpdate
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = 'eigen_true'
  [../]
[]

[UserObjects]
  [./update]
    type = LinearViscoelasticityManager
    viscoelastic_model = kelvin_voigt
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./creep_strain_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  l_max_its  = 50
  l_tol      = 1e-8
  nl_max_its = 20
  nl_rel_tol = 1e-11
  nl_abs_tol = 1e-8

  dtmin = 0.01
  end_time = 100
  [./TimeStepper]
    type = LogConstantDT
    first_dt = 0.1
    log_dt = 0.1
  [../]

[]

[Outputs]
  file_base = gen_kv_driving_out
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/reconstruction/euler2rgb_non_uniform_orientation.i

[Mesh]
  type = EBSDMesh
  filename = ebsd_scan.txt
[]

[GlobalParams]
  op_num = 10
  var_name_base = gr
[]

[UserObjects]
  [./ebsd_reader]
    type = EBSDReader
    bins = 40
  [../]
  [./ebsd]
    type = PolycrystalEBSD
    coloring_algorithm = jp
    ebsd_reader = ebsd_reader
    enable_var_coloring = true
  [../]
  [./grain_tracker]
    type = GrainTracker
    flood_entity_type = ELEMENTAL
    compute_halo_maps = true # For displaying HALO fields
    polycrystal_ic_uo = ebsd
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = ebsd
    [../]
  [../]
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
[]

[Modules]
  [./PhaseField]
    [./EulerAngles2RGB]
      crystal_structure = cubic
      euler_angle_provider = ebsd_reader
      grain_tracker = grain_tracker
    [../]
  [../]
[]

[Materials]
  [./Copper]
    # T = 500 # K
    type = GBEvolution
    T = 500
    wGB = 0.6               # um
    GBmob0 = 2.5e-6         # m^4/(Js) from Schoenfelder 1997
    Q = 0.23                # Migration energy in eV
    GBenergy = 0.708        # GB energy in J/m^2
    molar_volume = 7.11e-6  # Molar volume in m^3/mol
    length_scale = 1.0e-6
    time_scale = 1.0e-6
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
  [./n_elements]
    type = NumElems
    execute_on = 'initial timestep_end'
  [../]
  [./n_nodes]
    type = NumNodes
    execute_on = 'initial timestep_end'
  [../]
  [./DOFs]
    type = NumDOFs
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = Newton
  petsc_options_iname = '-pc_type -pc_hypre_type -pc_hypre_boomeramg_strong_threshold'
  petsc_options_value = 'hypre    boomeramg      0.7'
  l_tol = 1.0e-6
  l_max_its = 100
  nl_max_its = 20
  nl_rel_tol = 1.0e-8
  start_time = 0.0
  num_steps = 0
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/combined/test/tests/solid_mechanics/Wave_1_D/HHT_time_integration/wave_bc_1d.i

# Wave propogation in 1-D using HHT time integration
#
# The test is for an 1-D bar element of length 4m  fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the other end.
# alpha, beta and gamma are Newmark  time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel + K*((1+alpha)*disp-alpha*disp_old) = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# The displacement at the second, third and fourth node at t = 0.1 are
# -8.097405701570538350e-02, 2.113131879547342634e-02 and -5.182787688751439893e-03, respectively.

[GlobalParams]
  volumetric_locking_correction = false
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
  displacements = 'disp_x disp_y disp_z'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]


[Kernels]
  [./DynamicTensorMechanics]
    alpha = -0.3
    use_displaced_mesh = false
    displacements = 'disp_x disp_y disp_z'
  []
 [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    use_displaced_mesh = false
    beta = 0.3025
    gamma = 0.6
    alpha = -0.3
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    use_displaced_mesh = false
    beta = 0.3025
    gamma = 0.6
    alpha = -0.3
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    use_displaced_mesh = false
    beta = 0.3025
    gamma = 0.6
    alpha = -0.3
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.6
    execute_on = timestep_end
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
   type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
    [./bottom_x]
      type = DirichletBC
      variable = disp_x
      boundary = bottom
      value=0.0
    [../]
    [./bottom_z]
      type = DirichletBC
      variable = disp_z
      boundary = bottom
      value=0.0
    [../]
    [./bottom_y]
      type = FunctionDirichletBC
      variable = disp_y
      boundary = bottom
      function = displacement_bc
    [../]
[]


[Materials]
  [./constant]
    type = ComputeIsotropicElasticityTensor
    block = '0'
    youngs_modulus = 1.0
    poissons_ratio = 0.0
  [../]
  [./constant_strain]
    type= ComputeFiniteStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./constant_stress]
    type = ComputeFiniteStrainElasticStress
    block = '0'
  [../]
  [./density]
    type = GenericConstantMaterial
    block = '0'
    prop_names = 'density'
    prop_values = '1'
  [../]
[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 6.0
  dtmax = 0.1
  dtmin = 0.1
  l_tol = 1e-8
  nl_rel_tol = 1e-8
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.001 1 0.001 0.0 0.0'
    scale_factor = 7750
  [../]
  [./displacement_ic]
    type = PiecewiseLinear
    axis = y
    x = '0.0 0.3 0.4 0.5 0.6 0.7 1.0'
    y = '0.0 0.0 0.0001 1.0 0.0001 0.0 0.0'
    scale_factor = 0.1
  [../]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
    [./disp_1]
       type = NodalVariableValue
       nodeid = 1
       variable = disp_y
     [../]
    [./disp_2]
       type = NodalVariableValue
       nodeid = 3
       variable = disp_y
     [../]
    [./disp_3]
       type = NodalVariableValue
       nodeid = 10
       variable = disp_y
     [../]
    [./disp_4]
       type = NodalVariableValue
       nodeid = 14
       variable = disp_y
     [../]
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
[]

modules/porous_flow/test/tests/jacobian/waterncg_gas.i

# Tests correct calculation of properties derivatives in PorousFlowWaterNCG
# for conditions that give a single gas phase

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pgas]
  [../]
  [./z]
  [../]
[]

[ICs]
  [./pgas]
    type = RandomIC
    min = 1e4
    max = 4e4
    variable = pgas
  [../]
  [./z]
    type = RandomIC
    min = 0.88
    max = 0.98
    variable = z
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    variable = pgas
    fluid_component = 0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    variable = z
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
    pc_max = 1e3
  [../]
  [./fs]
    type = PorousFlowWaterNCG
    water_fp = water
    gas_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[AuxVariables]
  [./sgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./sgas]
    type = PorousFlowPropertyAux
    property = saturation
    phase = 1
    variable = sgas
  [../]
[]

[Postprocessors]
  [./sgas_min]
    type = ElementExtremeValue
    variable = sgas
    value_type = min
  [../]
  [./sgas_max]
    type = ElementExtremeValue
    variable = sgas
    value_type = max
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_2/ring2_template1.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring2_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/porous_flow/test/tests/flux_limited_TVD_advection/fltvd_3D.i

# Using Flux-Limited TVD Advection ala Kuzmin and Turek, with antidiffusion from superbee flux limiting
# 3D version
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  xmin = 0
  xmax = 1
  ny = 4
  ymin = 0
  ymax = 0.5
  nz = 3
  zmin = 0
  zmax = 2
[]

[Variables]
  [./tracer]
  [../]
[]

[Problem]
  error_on_jacobian_nonzero_reallocation=true
[]

[ICs]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass_dot]
    type = MassLumpedTimeDerivative
    variable = tracer
  [../]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = superbee
    u = tracer
    velocity = '0.1 0 0'
  [../]
[]

[BCs]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_tracer]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = right
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0.5 2'
    num_points = 11
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  nl_abs_tol = 1E-8
  nl_max_its = 500
  timestep_tolerance = 1E-3
[]

[Outputs]
  print_linear_residuals = false
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/transfers/multiapp_postprocessor_interpolation_transfer/multilevel_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./subsub_average]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = CoupledForce
    variable = u
    v = subsub_average
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./sub_average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.3

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0 0.5 0.5 0'
    input_files = multilevel_subsub.i
  [../]
[]

[Transfers]
  [./subsub_average]
    type = MultiAppPostprocessorInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    variable = subsub_average
    postprocessor = subsub_average
  [../]
[]

modules/xfem/test/tests/moving_interface/verification/2D_rz_homog1mat.i

# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality:                                         2D
# Coordinate System:                                      rz
# Material Numbers/Types:   homogeneous 1 material, 2 region
# Element Order:                                         1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
#   Transient 2D heat transfer problem in cylindrical coordinates designed with
#   the Method of Manufactured Solutions. This problem was developed to verify
#   XFEM performance on linear elements in the presence of a moving interface
#   sweeping across the x-y coordinates of a system with homogeneous material
#   properties. This problem can be exactly evaluated by FEM/Moose without the
#   moving interface. Both the temperature and level set function are designed
#   to be linear to attempt to minimize error between the Moose/exact solution
#   and XFEM results.
# Results:
#   The temperature at the bottom left boundary (x=1, y=1) exhibits the largest
#   difference between the FEM/Moose solution and XFEM results. We present the
#   XFEM results at this location with 10 digits of precision:
#     Time    Expected Temperature    XFEM Calculated Temperature
#      0.2                  440         440
#      0.4                  480         479.9998745
#      0.6                  520         519.9995067
#      0.8                  560         559.9989409
#      1.0                  600         599.9987054
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  xmin = 1.0
  xmax = 2.0
  ymin = 1.0
  ymax = 2.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = moment_fitting
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
    heal_always = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./heat_cond]
    type = MatDiffusion
    variable = u
    diffusivity = diffusion_coefficient
  [../]
  [./vol_heat_src]
    type = BodyForce
    variable = u
    function = src_func
  [../]
  [./mat_time_deriv]
    type = TestMatTimeDerivative
    variable = u
    mat_prop_value = rhoCp
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Constraints]
  [./xfem_constraints]
    type = XFEMSingleVariableConstraint
    variable = u
    geometric_cut_userobject = 'level_set_cut_uo'
    use_penalty = true
    alpha = 1e5
  [../]
[]

[Functions]
  [./src_func]
    type = ParsedFunction
    value = '10*(-100*x-100*y+400) + 100*1.5*t/x'
  [../]
  [./neumann_func]
    type = ParsedFunction
    value = '1.5*100*t'
  [../]
  [./dirichlet_right_func]
    type = ParsedFunction
    value = '(-100*y+200)*t+400'
  [../]
  [./dirichlet_top_func]
    type = ParsedFunction
    value = '(-100*x+200)*t+400'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = '-0.5*(x+y) + 2.04 - 0.2*t'
  [../]
[]

[Materials]
  [./mat_time_deriv_prop]
    type = GenericConstantMaterial
    prop_names = 'rhoCp'
    prop_values = 10
  [../]
  [./therm_cond_prop]
    type = GenericConstantMaterial
    prop_names = 'diffusion_coefficient'
    prop_values = 1.5
  [../]
[]

[BCs]
  [./left_du]
    type = FunctionNeumannBC
    variable = u
    boundary = 'left'
    function = neumann_func
  [../]
  [./right_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 'right'
    function = dirichlet_right_func
  [../]
  [./bottom_du]
    type = FunctionNeumannBC
    variable = u
    boundary = 'bottom'
    function = neumann_func
  [../]
  [./top_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 'top'
    function = dirichlet_top_func
  [../]
[]

[ICs]
  [./u_ic]
    type = ConstantIC
    value = 400
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_tol = 1.0e-6
  nl_max_its = 15
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-9

  start_time = 0.0
  dt = 0.2
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = 'initial timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/outputs/variables/show_single_vars.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Functions]
  [./ffn]
    type = ParsedFunction
    value = -4
  [../]

  [./exactfn]
    type = ParsedFunction
    value = x*x+y*y
  [../]

  [./aux_exact_fn]
    type = ParsedFunction
    value = t*(x*x+y*y)
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./force]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[AuxVariables]
  [./aux_u]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./a]
    type = FunctionAux
    variable = aux_u
    function = aux_exact_fn
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exactfn
  [../]
[]

[Postprocessors]
  [./elem_56]
    type = ElementalVariableValue
    variable = u
    elementid = 56
  [../]

  [./aux_elem_99]
    type = ElementalVariableValue
    variable = aux_u
    elementid = 99
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  dt = 0.01
  start_time = 0
  num_steps = 1
[]

[Outputs]
  exodus = true
  show = 'aux_u'
[]

modules/porous_flow/test/tests/dirackernels/bh02.i

# fully-saturated
# production
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole

    # Because the Variable for this Sink is pp, and pp is associated
    # with the fluid-mass conservation equation, this sink is extracting
    # fluid mass (and not heat energy or something else)
    variable = pp


    # The following specfies that the total fluid mass coming out of
    # the porespace via this sink in this timestep should be recorded
    # in the pls_total_outflow_mass UserObject
    SumQuantityUO = borehole_total_outflow_mass


    # The following file defines the polyline geometry
    # which is just two points in this particular example
    point_file = bh02.bh


    # First, we want Peacemans f to be a function of porepressure (and not
    # temperature or something else).  So bottom_p_or_t is actually porepressure
    function_of = pressure
    fluid_phase = 0

    # The bottomhole pressure
    bottom_p_or_t = 0

    # In this example there is no increase of the wellbore pressure
    # due to gravity:
    unit_weight = '0 0 0'

    # PeacemanBoreholes should almost always have use_mobility = true
    use_mobility = true

    # This is a production wellbore (a sink of fluid that removes fluid from porespace)
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]
  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

[Outputs]
  file_base = bh02
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/tensor_mechanics/test/tests/volumetric_eigenstrain/volumetric_eigenstrain.i

# This tests the ability of the ComputeVolumetricEigenstrain material
# to compute an eigenstrain tensor that results in a solution that exactly
# recovers the specified volumetric expansion.
# This model applies volumetric strain that ramps from 0 to 2 to a unit cube
# and computes the final volume, which should be exactly 3.  Note that the default
# TaylorExpansion option for decomposition_method gives a small (~4%) error
# with this very large incremental strain, but decomposition_method=EigenSolution
# gives the exact solution.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./volumetric_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./master]
    use_displaced_mesh = true
    strain = FINITE
    eigenstrain_names = eigenstrain
    decomposition_method = EigenSolution #Necessary for exact solution
  [../]
[]

[AuxKernels]
  [./volumetric_strain]
    type = RankTwoScalarAux
    scalar_type = VolumetricStrain
    rank_two_tensor = total_strain
    variable = volumetric_strain
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./finite_strain_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./volumetric_eigenstrain]
    type = ComputeVolumetricEigenstrain
    volumetric_materials = volumetric_change
    eigenstrain_name = eigenstrain
    args = ''
  [../]
  [./volumetric_change]
    type = GenericFunctionMaterial
    prop_names = volumetric_change
    prop_values = t
  [../]
[]

[Postprocessors]
  [./vol]
    type = VolumePostprocessor
    use_displaced_mesh = true
    execute_on = 'initial timestep_end'
  [../]
  [./volumetric_strain]
    type = ElementalVariableValue
    variable = volumetric_strain
    elementid = 0
  [../]
  [./disp_right]
    type = NodalMaxValue
    variable = disp_x
    boundary = right
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 2.0
  dt = 1.0
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/stochastic_tools/test/tests/vectorpostprocessors/stochastic_results/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Postprocessors]
  [avg]
    type = AverageNodalVariableValue
    variable = u
  []
[]

[Outputs]
[]

modules/combined/test/tests/mortar_tm/2d/ad_frictionless_fir/small.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'small'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
    use_automatic_differentiation = true
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
    block = 'plank block'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/phase_field/test/tests/ADCHSplitChemicalPotential/simple_transient_diffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [./c]
  [../]
  [./mu]
  [../]
[]

[Kernels]
  [./conc]
    type = ADCHSplitConcentration
    variable = c
    chemical_potential_var = mu
    mobility = mobility_prop
  [../]
  [./chempot]
    type = ADCHSplitChemicalPotential
    variable = mu
    chemical_potential = mu_prop
  [../]
  [./time]
    type = ADTimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./chemical_potential]
    type = ADPiecewiseLinearInterpolationMaterial
    property = mu_prop
    variable = c
    x = '0 1'
    y = '0 1'
  [../]
  [./mobility_prop]
    type = GenericConstantMaterial
    prop_names = mobility_prop
    prop_values = 0.1
  [../]
[]

[BCs]
  [./leftc]
    type = DirichletBC
    variable = c
    boundary = left
    value = 0
  [../]
  [./rightc]
    type = DirichletBC
    variable = c
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           2'
  dt = 0.1
  num_steps = 20
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/cwp04.i

# Capped weak-plane plasticity
# checking jacobian for tensile failure, with some shear
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 2
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 1
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 0 1  0 1 2'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 1
    smoothing_tol = 2
    yield_function_tol = 1E-10
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/phase_field/test/tests/actions/grain_growth_with_c.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  xmax = 400
  ymax = 400
  elem_type = QUAD
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Modules]
  [./PhaseField]
    [./GrainGrowth]
      c = c
    [../]
  [../]
[]

[AuxVariables]
  [./c]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalCircleGrainIC]
      radius = 300
      x = 400
      y = 0
      int_width = 60
    [../]
  [../]
  [./c_IC]
    type = SmoothCircleIC
    variable = c
    x1 = 100
    y1 = 0.0
    radius = 50
    int_width = 40
    invalue = 1.0
    outvalue = 0.0
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./gr1area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = 'NEWTON'
  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  num_steps = 5
  dt = 80.0
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/interaction_integral/interaction_integral_3d_points.i

#This tests the Interaction-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the Interaction-Integrals using options
#to treat it as 3d.

[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack3d.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  crack_front_points = '0 -10 .5
                        0 -10 0
                        0 -10 -.5'
  closed_loop = false # if user provides 'crack_front_points' instead of 'boundary', 'closed_loop' should be set by user!
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-7
  l_tol = 1e-3

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = interaction_integral_3d_points_out
  exodus = true
  csv = true
[]

modules/richards/test/tests/jacobian_2/jn_lumped_18.i

# two phase
# almost gas saturated

# gravity = true
# supg = true
# transient = true


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 0.5E-3'
  gravity = '1 2 3'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -100.0
      max = -90.0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn18
  exodus = false
[]

test/tests/outputs/console/multiapp/picard_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10
[]

modules/tensor_mechanics/test/tests/material_limit_time_step/damage/elements_changed_timestep_limit.i

# This is a basic test of the system for continuum damage mechanics
# materials. It uses ScalarMaterialDamage for the damage model,
# which simply gets its damage index from another material. In this
# case, we prescribe the evolution of the damage index using a
# function. A single element has a fixed prescribed displacement
# on one side that puts the element in tension, and then the
# damage index evolves from 0 to 1 over time, and this verifies
# that the stress correspondingly drops to 0.

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 1
  nz = 1
  elem_type = HEX8
[]

[AuxVariables]
  [damage_index]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[Modules/TensorMechanics/Master]
  [all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_xx strain_xx'
  []
[]

[AuxKernels]
  [damage_index]
    type = MaterialRealAux
    variable = damage_index
    property = damage_index_prop
    execute_on = timestep_end
  []
[]

[BCs]
  [symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  []
  [symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  []
  [symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  []
  [axial_load]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.01
  []
[]

[Functions]
  [damage_evolution]
    type = ParsedFunction
    value = 'min(1.0, max(0.0, t - x * 3.0))'
  []
[]

[Materials]
  [damage_index]
    type = GenericFunctionMaterial
    prop_names = damage_index_prop
    prop_values = damage_evolution
  []
  [damage]
    type = ScalarMaterialDamage
    damage_index = damage_index_prop
    use_old_damage = true
    maximum_damage_increment = 0.5
  []
  [stress]
    type = ComputeDamageStress
    damage_model = damage
  []
  [elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.2
    youngs_modulus = 10e9
  []
[]

[Postprocessors]
  [stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  []
  [strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  []
  [damage_index]
    type = ElementAverageValue
    variable = damage_index
  []
  [time_step_limit]
    type = MaterialTimeStepPostprocessor
    use_material_timestep_limit = false
    elements_changed_property = damage_index_prop
    elements_changed = 4
  []
[]

[Executioner]
  type = Transient

  l_max_its  = 50
  l_tol      = 1e-8
  nl_max_its = 20
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-6

  dtmin = 0.001
  end_time = 4.0
  [TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.2
    growth_factor = 2.0
    cutback_factor = 0.5
    timestep_limiting_postprocessor = time_step_limit
  []
[]

[Outputs]
  exodus = true
  csv=true
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test6.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 4
    ny = 4
    nz = 2
    xmin = 0
    xmax = 4
    ymin = 0
    ymax = 4
    zmin = 0
    zmax = 2
  []

  [./SubdomainBoundingBox1]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '1 2 1'
  [../]
  [./SubdomainBoundingBox2]
    type = SubdomainBoundingBoxGenerator
    input = SubdomainBoundingBox1
    block_id = 1
    bottom_left = '1 1 0'
    top_right = '3 3 1'
  [../]
  [./SubdomainBoundingBox3]
    type = SubdomainBoundingBoxGenerator
    input = SubdomainBoundingBox2
    block_id = 1
    bottom_left = '2 2 1'
    top_right = '3 3 2'
  [../]
  [./ed0]
    type = BlockDeletionGenerator
    block_id = 1
    input = SubdomainBoundingBox3
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/Nucleation/marker.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  nz = 0
  xmin = 0
  xmax = 20
  ymin = 0
  ymax = 20
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    variable = c
    value = 0
  [../]
  [./right]
    type = DirichletBC
    boundary = right
    variable = c
    value = 1
  [../]
  [./Periodic]
    [./all]
      auto_direction = y
    [../]
  [../]
[]

[Kernels]
  [./c]
    type = Diffusion
    variable = c
  [../]
  [./dt]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./nucleation]
    type = DiscreteNucleation
    op_names  = c
    op_values = 1
    map = map
    outputs = exodus
  [../]
[]

[UserObjects]
  [./inserter]
    type = DiscreteNucleationInserter
    hold_time = 1
    probability = 0.01
  [../]
  [./map]
    type = DiscreteNucleationMap
    radius = 3.27
    periodic = c
    inserter = inserter
  [../]
[]

[Adaptivity]
  [./Markers]
    [./nuc]
      type = DiscreteNucleationMarker
      map = map
    [../]
  [../]
  marker = nuc
  cycles_per_step = 3
  recompute_markers_during_cycles = true
  max_h_level = 3
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 10
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  hide = c
[]

modules/richards/test/tests/gravity_head_2/gh_fu_17.i

# unsaturated = false
# gravity = true
# full upwinding = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 1
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-15 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh_fu_17
  csv = true
[]

modules/xfem/test/tests/corner_nodes_cut/notch.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '-0.26 0.0 0.0 0.1'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Mesh]
  file = notch.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
  [../]
[]

[BCs]
  [./top_x]
    type = DirichletBC
    boundary = 102
    variable = disp_x
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 102
    variable = disp_y
    value = 0.1
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 101
    variable = disp_y
    value = -0.1
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 101
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-9

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/transfers/multiapp_postprocessor_transfer/master_from_multiapp.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_sub]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./sub_average]
    type = Receiver
  [../]
  [./sub_sum]
    type = Receiver
  [../]
  [./sub_maximum]
    type = Receiver
  [../]
  [./sub_minimum]
    type = Receiver
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    positions = '0.2 0.2 0 0.7 0.7 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = 'sub0.i sub1.i'
  [../]
[]

[Transfers]
  [./pp_transfer_ave]
    type = MultiAppPostprocessorTransfer
    reduction_type = average
    direction = from_multiapp
    multi_app = sub
    from_postprocessor = average
    to_postprocessor = sub_average
  [../]
  [./pp_transfer_sum]
    type = MultiAppPostprocessorTransfer
    reduction_type = sum
    direction = from_multiapp
    multi_app = sub
    from_postprocessor = average
    to_postprocessor = sub_sum
  [../]
  [./pp_transfer_min]
    type = MultiAppPostprocessorTransfer
    reduction_type = minimum
    direction = from_multiapp
    multi_app = sub
    from_postprocessor = average
    to_postprocessor = sub_minimum
  [../]
  [./pp_transfer_max]
    type = MultiAppPostprocessorTransfer
    reduction_type = maximum
    direction = from_multiapp
    multi_app = sub
    from_postprocessor = average
    to_postprocessor = sub_maximum
  [../]
[]

modules/functional_expansion_tools/examples/3D_volumetric_Cartesian_direct/main.i

# Derived from the example '3D_volumetric_Cartesian' with the following differences:
#
#   1) The coupling is performed via BodyForce instead of the
#      FunctionSeriesToAux+CoupledForce approach
[Mesh]
  type = GeneratedMesh
  dim = 3

  xmin = 0.0
  xmax = 10.0
  nx = 15

  ymin = 1.0
  ymax = 11.0
  ny = 25

  zmin = 2.0
  zmax = 12.0
  nz = 35
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = HeatConduction
    variable = m
  [../]
  [./time_diff_m]
    type = HeatConductionTimeDerivative
    variable = m
  [../]
  [./s_in] # Add in the contribution from the SubApp
    type = BodyForce
    variable = m
    function = FX_Basis_Value_Main
  [../]
[]

[Materials]
  [./Unobtanium]
    type = GenericConstantMaterial
    prop_names =  'thermal_conductivity specific_heat density'
    prop_values = '1.0                  1.0           1.0' # W/(cm K), J/(g K), g/cm^3
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'top bottom left right front back'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3   4   5'
    physical_bounds = '0.0  10.0    1.0 11.0    2.0 12.0'
    x = Legendre
    y = Legendre
    z = Legendre
    enable_cache = true
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

test/tests/predictors/simple/predictor_skip_test.i

# The purpose of this test is to test the simple predictor.  This is a very
# small, monotonically loaded block of material.  If things are working right,
# the predictor should come very close to exactly nailing the solution on steps
# after the first step.

#This test checks to see that the predictor is skipped in the last step.

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 3
  ny = 3
[]

[Functions]
  [./ramp1]
    type = ParsedFunction
    value = 't'
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./bot]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 0.0
  [../]
  [./ss2_x]
    type = FunctionDirichletBC
    variable = u
    boundary = top
    function = ramp1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-14

  start_time = 0.0
  dt = 0.5
  end_time = 1.0

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
    skip_times = '1.0'
  [../]
[]

[Postprocessors]
  [./final_residual]
    type = Residual
    residual_type = final
  [../]
  [./initial_residual_before]
    type = Residual
    residual_type = initial_before_preset
  [../]
  [./initial_residual_after]
    type = Residual
    residual_type = initial_after_preset
  [../]
[]

[Outputs]
  csv = true
[]

modules/xfem/test/tests/diffusion_xfem/diffusion_flux_bc.i

# The Neumann BC is applied on the cutted boundary.
# The solution is not correct because so far integration along the cutted element faces is not right.
# To correct this, we need to re-calcuate the weights based on area/volume fraction. This will be implemented soon.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 6
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5  1.0  0.5  0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./top_u]
    type = NeumannBC
    variable = u
    boundary = 2
    value = -1.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = u
    boundary = 0
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/exception/ad.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_update_strategy = iteration
  [./gen]
    type = FileMeshGenerator
    file = mesh.e
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./temp]
    initial_condition = 501
  [../]
[]

[AuxVariables]
  [./density_aux]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Modules/TensorMechanics/Master]
  [./finite]
    strain = FINITE
    use_automatic_differentiation = true
  [../]
[]

[Kernels]
  [./gravity]
    type = ADGravity
    variable = disp_y
    value = -9.81
  [../]
  [./heat]
    type = ADMatDiffusion
    variable = temp
    diffusivity = 1
  [../]
  [./heat_ie]
    type = ADTimeDerivative
    variable = temp
  [../]
[]

[AuxKernels]
  [./conductance]
    type = MaterialRealAux
    property = density
    variable = density_aux
    boundary = inner_surface
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = outer_interior
    slave = inner_surface
    quadrature = true
  [../]
[]

[BCs]
  [./no_x]
    type = ADDirichletBC
    variable = disp_x
    boundary = 'centerline'
    value = 0.0
  [../]
  [./no_y]
    type = ADDirichletBC
    variable = disp_y
    boundary = 'centerline outer_exterior'
    value = 0.0
  [../]
  [./temp]
    type = FunctionDirichletBC
    boundary = outer_exterior
    variable = temp
    function = '500 + t'
  [../]
[]

[Materials]
  [./density]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '1'
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e11
    poissons_ratio = 0.3
  [../]

  [./inner_elastic_stress]
    type = ADComputeMultipleInelasticStress
    inelastic_models = 'inner_creep'
    block = inner
    outputs = all
  [../]

  [./inner_creep]
    type = ADPowerLawCreepExceptionTest
    coefficient = 10e-22
    n_exponent = 2
    activation_energy = 0
    block = inner
  [../]

  [./outer_stressstress]
    type = ADComputeFiniteStrainElasticStress
    block = outer
  [../]
[]

[Executioner]
  type = Transient
  petsc_options = ' -snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
  line_search = none

  nl_abs_tol = 1e-7
  l_max_its = 20

  num_steps = 1
  dt = 1
  dtmin = .1
[]

[Outputs]
  exodus = true
[]

test/tests/restart/restart_diffusion/exodus_refined_refined_restart_2_test.i

[Mesh]
  file = exodus_refined_restart_1.e
  uniform_refine = 1
  # Restart relies on the ExodusII_IO::copy_nodal_solution()
  # functionality, which only works with ReplicatedMesh.
  parallel_type = replicated
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
    initial_from_file_var = u
    initial_from_file_timestep = 2
  [../]
[]

[Kernels]
  active = 'bodyforce ie'

  [./bodyforce]
    type = BodyForce
    variable = u
    value = 10.0
  [../]

  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  active = 'left right'

  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 10
  dt = .1
[]

[Outputs]
  file_base = exodus_refined_refined_restart_2
  exodus = true
[]

modules/combined/test/tests/reference_residual/reference_residual.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 4
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./saved_t]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    volumetric_locking_correction = true
    incremental = true
    save_in = 'saved_x saved_y saved_z'
    eigenstrain_names = thermal_expansion
    strain = FINITE
    decomposition_method = EigenSolution
    extra_vector_tags = 'ref'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
    save_in = saved_t
    extra_vector_tags = 'ref'
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 1 1'
    scale_factor = 0.1
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]

  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value = 0.0
  [../]

  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pull
  [../]

  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value = 0.0
  [../]

  [./bottom_temp]
    type = DirichletBC
    variable = temp
    boundary = bottom
    value = 10.0
  [../]

  [./top_temp]
    type = DirichletBC
    variable = temp
    boundary = top
    value = 20.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    youngs_modulus = 1.0
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]

  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    block = 0
    eigenstrain_name = thermal_expansion
    temperature = temp
    thermal_expansion_coeff = 1e-5
    stress_free_temperature = 0.0
  [../]

  [./heat1]
    type = HeatConductionMaterial
    block = 0
    specific_heat = 1.0
    thermal_conductivity = 1e-3 #Tuned to give temperature reference resid close to that of solidmech
  [../]

  [./density]
    type = Density
    block = 0
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10

  l_tol = 1e-3
  l_max_its = 100

  dt = 1.0
  end_time = 2.0
[]

[Postprocessors]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./ref_resid_z]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_z
  [../]
  [./ref_resid_t]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_t
  [../]
  [./nonlinear_its]
    type = NumNonlinearIterations
  []
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking_xyz.i

#

[Mesh]
  file = cracking_test.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./displx]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.00175'
  [../]
  [./velocity_y]
    type = ParsedFunction
    value = 'if(t < 2, 0.00175, 0)'
  [../]
  [./velocity_z]
    type = ParsedFunction
    value = 0.00175
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./move_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = displx
  [../]

  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./move_y]
    type = PresetVelocity
    variable = disp_y
    boundary = 5
    function = velocity_y
#    time_periods = 'p2 p3'
  [../]

  [./fix_z]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]
  [./move_z]
    type = PresetVelocity
    variable = disp_z
    boundary = 6
    function = velocity_z
#    time_periods = 'p3'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 186.5e9
    poissons_ratio = .316
  [../]
  [./elastic_stress]
    type = ComputeSmearedCrackingStress
    cracking_stress = 119.3e6
    softening_models = exponential_softening
  [../]
  [./exponential_softening]
    type = ExponentialSoftening
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type'
  petsc_options_value = '101                lu'


  line_search = 'none'


  l_max_its = 100
  l_tol = 1e-5

  nl_max_its = 100
  nl_abs_tol = 1e-4
  #nl_rel_tol = 1e-4
  nl_rel_tol = 1e-6

  start_time = 0.0
  end_time = 3.0
  dt = 0.01
[]

[Controls]
  [./p1]
    type = TimePeriod
    start_time = 0.0
    end_time = 1.0
    disable_objects = 'BCs/move_y BCs/move_z'
    reverse_on_false = false
    execute_on = 'initial timestep_begin'
  [../]

  [./p2]
    type = TimePeriod
    start_time = 1.0
    end_time = 2.0
    disable_objects = 'BCs/move_z'
    enable_objects = 'BCs/move_y'
    reverse_on_false = false
    execute_on = 'initial timestep_begin'
  [../]

  [./p3]
    type = TimePeriod
    start_time = 2.0
    end_time = 3.0
    enable_objects = 'BCs/move_y BCs/move_z'
    reverse_on_false = false
    execute_on = 'initial timestep_begin'
    set_sync_times = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/pressure/sm/pressure_rspherical_sm.i

#
# Prescribed pressure of 1e4 leads to xx, yy, and zz stress of 1e4.
#

[GlobalParams]
  volumetric_locking_correction = false
[]

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]#Comment
  file = pressure_rspherical.e
  construct_side_list_from_node_list = true
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e4
  [../]
[]

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

[]

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

[] # AuxVariables

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    use_displaced_mesh = false
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
[]

[BCs]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1'
    value = 0.0
  [../]

  [./Pressure]
    [./Pressure1]
      boundary = 2
      function = pressure
      disp_x = disp_x
    [../]
  [../]

[]

[Materials]
  [./stiffStuff]
    type = Elastic
    block = '1 2 3'

    disp_r = disp_x

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]

  type = Transient

  solve_type = PJFNK



  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/csv/csv_restart_part1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./mid]
    type = PointValue
    variable = u
    point = '0.5 0.5 0'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
  checkpoint = true
[]

modules/tensor_mechanics/test/tests/inclined_bc/inclined_bc_3d.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 2
    ny = 4
    nz = 2
    xmin = 0.0
    xmax = 1.0
    ymin = 0.0
    ymax = 2.0
    zmin = 0.0
    zmax = 1.0
    elem_type = HEX8
  []
  [rotate]
    type = TransformGenerator
    transform = ROTATE
    vector_value = '0 -20 -60'
    input = generated_mesh
  []
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  add_variables = true
[]

[BCs]
  [./Pressure]
    [./top]
      boundary = top
      function = '-1000*t'
    [../]
  [../]
  [./InclinedNoDisplacementBC]
    [./right]
      boundary = right
      penalty = 1.0e8
      displacements = 'disp_x disp_y disp_z'
    [../]
    [./bottom]
      boundary = bottom
      penalty = 1.0e8
      displacements = 'disp_x disp_y disp_z'
    [../]
    [./back]
      boundary = back
      penalty = 1.0e8
      displacements = 'disp_x disp_y disp_z'
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  # controls for linear iterations
  l_max_its = 10
  l_tol = 1e-4

  # controls for nonlinear iterations
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-12

  # time control
  start_time = 0.0
  dt = 1
  end_time = 5
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/functions/image_function/image_3d_subset.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 20
  ny = 20
  nz = 6
  zmax = 0.3
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file_base = stack/test
    file_suffix = png
    file_range = '0 5'
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[../]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/reference_residual/reference_residual_perfgraph.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 4
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./saved_t]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    volumetric_locking_correction = true
    incremental = true
    save_in = 'saved_x saved_y saved_z'
    eigenstrain_names = thermal_expansion
    strain = FINITE
    decomposition_method = EigenSolution
    extra_vector_tags = 'ref'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
    save_in = saved_t
    extra_vector_tags = 'ref'
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 1 1'
    scale_factor = 0.1
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]

  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value = 0.0
  [../]

  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pull
  [../]

  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value = 0.0
  [../]

  [./bottom_temp]
    type = DirichletBC
    variable = temp
    boundary = bottom
    value = 10.0
  [../]

  [./top_temp]
    type = DirichletBC
    variable = temp
    boundary = top
    value = 20.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    youngs_modulus = 1.0
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]

  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    block = 0
    eigenstrain_name = thermal_expansion
    temperature = temp
    thermal_expansion_coeff = 1e-5
    stress_free_temperature = 0.0
  [../]

  [./heat1]
    type = HeatConductionMaterial
    block = 0
    specific_heat = 1.0
    thermal_conductivity = 1e-3 #Tuned to give temperature reference resid close to that of solidmech
  [../]

  [./density]
    type = Density
    block = 0
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  l_tol = 1e-3
  l_max_its = 100
  dt = 1.0
  end_time = 2.0
[]

[Postprocessors]
  [./res_calls]
    type = PerfGraphData
    section_name = "ReferenceResidualProblem::computeResidualInternal"
    data_type = calls
  [../]
  [./elapsed]
    type = PerfGraphData
    section_name = "Root"
    data_type = total
  [../]
[]

[Outputs]
  csv = true
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test4qns.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4q.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.025
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test4qns_out
  exodus = true
[]

test/tests/postprocessors/element_time_derivative/element_time_derivative_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    # dudt = 3*t^2*(x^2 + y^2)
    type = ParsedFunction
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]
  [./forcing_fn2]
    # dudt = 3*t^2*(x^2 + y^2)
    type = ParsedFunction
    value = t*x*y
  [../]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn2
  [../]
[]

[BCs]
  active = 'all'
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Postprocessors]
  [./elementAvgTimeDerivative]
    type = ElementAverageTimeDerivative
    variable = u
  [../]
  [./elementAvgValue]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  scheme = implicit-euler

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_elm_time_deriv
  csv = true
[]

modules/combined/test/tests/elastic_patch/elastic_patch_rz_nonlinear.i

#
# This problem is taken from the Abaqus verification manual:
#   "1.5.4 Patch test for axisymmetric elements"
# The stress solution is given as:
#   xx = yy = zz = 19900
#   xy = 0
#
# If strain = log(1+1e-2) = 0.00995033...
# then
# stress = E/(1+PR)/(1-2*PR)*(1-PR +PR +PR)*strain = 19900.6617
# with E = 1e6 and PR = 0.25.
#
# The code computes stress = 19900.6617 when
# increment_calculation = eigen.  There is a small error when the
# rashidapprox option is used.
#
# Since the strain is 1e-3 in all three directions, the new density should be
#   new_density = original_density * V_0 / V
#   new_density = 0.283 / (1 + 9.95e-3 + 9.95e-3 + 9,95e-3) = 0.2747973
#
# The code computes a new density of .2746770


[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_patch_rz.e
[]

[Variables]
  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  decomposition_method = EigenSolution
  add_variables = true
  generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
[]

[Kernels]
  [./heat]
    type = TimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = 10
    function = '1e-2*x'
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 10
    function = '1e-2*y'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./density]
    type = Density
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/moving_interface/verification/2D_xy_homog1mat.i

# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality:                                         2D
# Coordinate System:                                      xy
# Material Numbers/Types:   homogeneous 1 material, 2 region
# Element Order:                                         1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
#   Transient 2D heat transfer problem in Cartesian coordinates designed with
#   the Method of Manufactured Solutions. This problem was developed to verify
#   XFEM performance on linear elements in the presence of a moving interface
#   sweeping across the x-y coordinates of a system with homogeneous material
#   properties. This problem can be exactly evaluated by FEM/Moose without the
#   moving interface. Both the temperature and level set function are designed
#   to be linear to attempt to minimize error between the Moose/exact solution
#   and XFEM results.
# Results:
#   The temperature at the bottom left boundary (x=0, y=0) exhibits the largest
#   difference between the FEM/Moose solution and XFEM results. We present the
#   XFEM results at this location with 10 digits of precision:
#     Time    Expected Temperature    XFEM Calculated Temperature
#      0.2                  440         440
#      0.4                  480         479.9998791
#      0.6                  520         519.9995307
#      0.8                  560         559.9989724
#      1.0                  600         599.9984541
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = moment_fitting
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
    heal_always = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./heat_cond]
    type = MatDiffusion
    variable = u
    diffusivity = diffusion_coefficient
  [../]
  [./vol_heat_src]
    type = BodyForce
    variable = u
    function = src_func
  [../]
  [./mat_time_deriv]
    type = TestMatTimeDerivative
    variable = u
    mat_prop_value = rhoCp
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Constraints]
  [./xfem_constraints]
    type = XFEMSingleVariableConstraint
    variable = u
    geometric_cut_userobject = 'level_set_cut_uo'
    use_penalty = true
    alpha = 1e5
  [../]
[]

[Functions]
  [./src_func]
    type = ParsedFunction
    value = '10*(-100*x-100*y+200)'
  [../]
  [./neumann_func]
    type = ParsedFunction
    value = '1.5*100*t'
  [../]
  [./dirichlet_right_func]
    type = ParsedFunction
    value = '(-100*y+100)*t+400'
  [../]
  [./dirichlet_top_func]
    type = ParsedFunction
    value = '(-100*x+100)*t+400'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = '-0.5*(x+y) + 1.04 - 0.2*t'
  [../]
[]

[Materials]
  [./mat_time_deriv_prop]
    type = GenericConstantMaterial
    prop_names = 'rhoCp'
    prop_values = 10
  [../]
  [./therm_cond_prop]
    type = GenericConstantMaterial
    prop_names = 'diffusion_coefficient'
    prop_values = 1.5
  [../]
[]

[BCs]
  [./left_du]
    type = FunctionNeumannBC
    variable = u
    boundary = 'left'
    function = neumann_func
  [../]
  [./right_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 'right'
    function = dirichlet_right_func
  [../]
  [./bottom_du]
    type = FunctionNeumannBC
    variable = u
    boundary = 'bottom'
    function = neumann_func
  [../]
  [./top_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 'top'
    function = dirichlet_top_func
  [../]
[]

[ICs]
  [./u_ic]
    type = ConstantIC
    value = 400
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_tol = 1.0e-6
  nl_max_its = 15
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-9

  start_time = 0.0
  dt = 0.2
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = 'initial timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/phase_field/test/tests/mobility_derivative/AC_mobility_derivative_test.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 40
  xmax = 25
[]

[Variables]
  [./op]
  [../]
[]

[ICs]
  [./op_IC]
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 6.0
    invalue = 1
    outvalue = 0
    int_width = 3.0
    variable = op
  [../]
[]

[Kernels]
  [./op_dot]
    type = TimeDerivative
    variable = op
  [../]
  [./op_bulk]
    type = AllenCahn
    variable = op
    f_name = F
    mob_name = L
  [../]
  [./op_interface]
    type = ACInterface
    variable = op
    kappa_name = 1
    mob_name = L
  [../]
[]

[Materials]
  [./consts]
    type = DerivativeParsedMaterial
    f_name  = L
    function = 'if(op<0, 0.01, if(op>1, 0.01, 1*op^2*(1-op)^2+0.01))'
    args = 'op'
    outputs = exodus
    output_properties = 'L dL/dop dL/dv'
    derivative_order = 2
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'op'
    function = '2*op^2*(1-op)^2 - 0.2*op'
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 15
  nl_rel_tol = 1.0e-9

  start_time = 0.0
  num_steps = 20
  dt = 2.0
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
[]

test/tests/multiapps/output_in_position/multilevel_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '1 1 0'
    input_files = master.i
    output_in_position = true
  [../]
[]

modules/xfem/test/tests/second_order_elements/diffusion_2d_quad8.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 4
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD8
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.35 1.0 0.35 0.2'
    time_start_cut = 0.0
    time_end_cut = 2.0
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 3
    function = u_left
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/phase_field/test/tests/anisotropic_mobility/ad_diffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  xmax = 15.0
  ymax = 15.0
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = CrossIC
      x1 = 0.0
      x2 = 30.0
      y1 = 0.0
      y2 = 30.0
    [../]
  [../]
[]

[Kernels]
  [./cres]
    type = ADMatAnisoDiffusion
    diffusivity = D
    variable = c
  [../]
  [./time]
    type = ADTimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./D]
    type = ConstantAnisotropicMobility
    tensor = '0.1 0 0
              0   1 0
              0   0 0'
    M_name = D
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'
  solve_type = 'NEWTON'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 50
  nl_rel_tol = 1.0e-10

  dt = 10.0
  num_steps = 2
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

modules/combined/test/tests/contact/sm/4ElemTensionRelease_sm.i

[Mesh]
  file = 4ElemTensionRelease.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1      2 3'
    y = '0 0.0001 0 -.0001'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = frictionless
    tangential_tolerance = 0.01
    system = Constraint
  [../]
[]

[BCs]
  [./lateral]
    type = DirichletBC
    variable = disp_x
    boundary = '1 4'
    value = 0
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = up
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 10
  dt = 0.2
  dtmin = 0.2
  end_time = 3

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/kernels/ode/parsedode_sys_impl_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
  elem_type = QUAD4
[]

[Functions]
  [./f_fn]
    type = ParsedFunction
    value = -4
  [../]
  [./bc_all_fn]
    type = ParsedFunction
    value = x*x+y*y
  [../]

  # ODEs
  [./exact_x_fn]
    type = ParsedFunction
    value = (-1/3)*exp(-t)+(4/3)*exp(5*t)
  [../]
[]

# NL

[Variables]
  [./u]
    family = LAGRANGE
    order = FIRST
  [../]

  # ODE variables
  [./x]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
  [./y]
    family = SCALAR
    order = FIRST
    initial_condition = 2
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./uff]
    type = BodyForce
    variable = u
    function = f_fn
  [../]
[]

[ScalarKernels]
  [./td1]
    type = ODETimeDerivative
    variable = x
  [../]
  [./ode1]
    type = ParsedODEKernel
    function = '-3*x - 2*y'
    variable = x
    args = y
  [../]

  [./td2]
    type = ODETimeDerivative
    variable = y
  [../]
  [./ode2]
    type = ParsedODEKernel
    function = '-4*x - y'
    variable = y
    args = x
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = bc_all_fn
  [../]
[]

[Postprocessors]
  active = 'exact_x l2err_x x y'

  [./x]
    type = ScalarVariable
    variable = x
    execute_on = 'initial timestep_end'
  [../]
  [./y]
    type = ScalarVariable
    variable = y
    execute_on = 'initial timestep_end'
  [../]

  [./exact_x]
    type = FunctionValuePostprocessor
    function = exact_x_fn
    execute_on = 'initial timestep_end'
    point = '0 0 0'
  [../]

  [./l2err_x]
    type = ScalarL2Error
    variable = x
    function = exact_x_fn
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  dt = 0.01
  num_steps = 100

  solve_type = 'PJFNK'
[]

[Outputs]
  file_base = ode_sys_impl_test_out
  exodus = true
[]

modules/porous_flow/test/tests/poro_elasticity/mandel.i

# Mandel's problem of consolodation of a drained medium
#
# A sample is in plane strain.
# -a <= x <= a
# -b <= y <= b
# It is squashed with constant force by impermeable, frictionless plattens on its top and bottom surfaces (at y=+/-b)
# Fluid is allowed to leak out from its sides (at x=+/-a)
# The porepressure within the sample is monitored.
#
# As is common in the literature, this is simulated by
# considering the quarter-sample, 0<=x<=a and 0<=y<=b, with
# impermeable, roller BCs at x=0 and y=0 and y=b.
# Porepressure is fixed at zero on x=a.
# Porepressure and displacement are initialised to zero.
# Then the top (y=b) is moved downwards with prescribed velocity,
# so that the total force that is inducing this downwards velocity
# is fixed.  The velocity is worked out by solving Mandel's problem
# analytically, and the total force is monitored in the simulation
# to check that it indeed remains constant.
#
# Here are the problem's parameters, and their values:
# Soil width.  a = 1
# Soil height.  b = 0.1
# Soil's Lame lambda.  la = 0.5
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = G = 0.75
# Soil bulk modulus.  K = la + 2*mu/3 = 1
# Drained Poisson ratio.  nu = (3K - 2G)/(6K + 2G) = 0.2
# Soil bulk compliance.  1/K = 1
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Biot modulus.  M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 4.705882
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.694118
# Undrained Poisson ratio.  nuu = (3Ku - 2G)/(6Ku + 2G) = 0.372627
# Skempton coefficient.  B = alpha*M/Ku = 1.048035
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Consolidation coefficient.  c = 2*k*B^2*G*(1-nu)*(1+nuu)^2/9/(1-nuu)/(nuu-nu) = 3.821656
# Normal stress on top.  F = 1
#
# The solution for porepressure and displacements is given in
# AHD Cheng and E Detournay "A direct boundary element method for plane strain poroelasticity" International Journal of Numerical and Analytical Methods in Geomechanics 12 (1988) 551-572.
# The solution involves complicated infinite series, so I shall not write it here
#
# FINAL NOTE: The above solution assumes constant Biot Modulus.
# In porous_flow this is not true.  Therefore the solution is
# a little different than in the paper.  This test was therefore
# validated against MOOSE's poromechanics, which can choose either
# a constant Biot Modulus (which has been shown to agree with
# the analytic solution), or a non-constant Biot Modulus (which
# gives the same results as porous_flow).

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 0.1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1e-5
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./roller_xmin]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left'
  [../]
  [./roller_ymin]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom'
  [../]
  [./plane_strain]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
  [./xmax_drained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = right
  [../]
  [./top_velocity]
    type = FunctionDirichletBC
    variable = disp_y
    function = top_velocity
    boundary = top
  [../]
[]

[Functions]
  [./top_velocity]
    type = PiecewiseLinear
    x = '0 0.002 0.006   0.014   0.03    0.046   0.062   0.078   0.094   0.11    0.126   0.142   0.158   0.174   0.19 0.206 0.222 0.238 0.254 0.27 0.286 0.302 0.318 0.334 0.35 0.366 0.382 0.398 0.414 0.43 0.446 0.462 0.478 0.494 0.51 0.526 0.542 0.558 0.574 0.59 0.606 0.622 0.638 0.654 0.67 0.686 0.702'
    y = '-0.041824842    -0.042730269    -0.043412712    -0.04428867     -0.045509181    -0.04645965     -0.047268246 -0.047974749      -0.048597109     -0.0491467  -0.049632388     -0.050061697      -0.050441198     -0.050776675     -0.051073238      -0.0513354 -0.051567152      -0.051772022     -0.051953128 -0.052113227 -0.052254754 -0.052379865 -0.052490464 -0.052588233 -0.052674662 -0.052751065 -0.052818606 -0.052878312 -0.052931093 -0.052977751 -0.053018997 -0.053055459 -0.053087691 -0.053116185 -0.053141373 -0.05316364 -0.053183324 -0.053200724 -0.053216106 -0.053229704 -0.053241725 -0.053252351 -0.053261745 -0.053270049 -0.053277389 -0.053283879 -0.053289615'
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_force]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./tot_force]
    type = ParsedAux
    args = 'stress_yy porepressure'
    execute_on = timestep_end
    variable = tot_force
    function = '-stress_yy+0.6*porepressure'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = porepressure
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = porepressure
    gravity = '0 0 0'
    fluid_component = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 8
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    ensure_positive = false
    porosity_zero = 0.1
    biot_coefficient = 0.6
    solid_bulk = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0 # unimportant in this fully-saturated situation
    phase = 0
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0.0 0 0'
    variable = porepressure
  [../]
  [./p1]
    type = PointValue
    outputs = csv
    point = '0.1 0 0'
    variable = porepressure
  [../]
  [./p2]
    type = PointValue
    outputs = csv
    point = '0.2 0 0'
    variable = porepressure
  [../]
  [./p3]
    type = PointValue
    outputs = csv
    point = '0.3 0 0'
    variable = porepressure
  [../]
  [./p4]
    type = PointValue
    outputs = csv
    point = '0.4 0 0'
    variable = porepressure
  [../]
  [./p5]
    type = PointValue
    outputs = csv
    point = '0.5 0 0'
    variable = porepressure
  [../]
  [./p6]
    type = PointValue
    outputs = csv
    point = '0.6 0 0'
    variable = porepressure
  [../]
  [./p7]
    type = PointValue
    outputs = csv
    point = '0.7 0 0'
    variable = porepressure
  [../]
  [./p8]
    type = PointValue
    outputs = csv
    point = '0.8 0 0'
    variable = porepressure
  [../]
  [./p9]
    type = PointValue
    outputs = csv
    point = '0.9 0 0'
    variable = porepressure
  [../]
  [./p99]
    type = PointValue
    outputs = csv
    point = '1 0 0'
    variable = porepressure
  [../]
  [./xdisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_x
  [../]
  [./ydisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_y
  [../]
  [./total_downwards_force]
     type = ElementAverageValue
     outputs = csv
     variable = tot_force
  [../]
  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.15*t<0.01,0.15*t,0.01)
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres asm lu 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 0.7
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.001
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mandel
  [./csv]
    interval = 3
    type = CSV
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_4/cyl4_mu_0_2_pen.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl4_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = cyl4_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = cyl4_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

test/tests/geomsearch/3d_moving_penetration/pl_test3q.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3q.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.025
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test3q_out
  exodus = true
[]

test/tests/outputs/console/console_final.i

###########################################################
# This test exercises console Output control. The console
# output is only output every third step. Additionally it
# is forced to be output after the final timestep as well.
#
# @Requirement U1.40
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Functions]
  [./ffn]
    type = ParsedFunction
    value = -4
  [../]

  [./exactfn]
    type = ParsedFunction
    value = x*x+y*y
  [../]

  [./aux_exact_fn]
    type = ParsedFunction
    value = t*(x*x+y*y)
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./force]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[AuxVariables]
  [./aux_u]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./a]
    type = FunctionAux
    variable = aux_u
    function = aux_exact_fn
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exactfn
  [../]
[]

[Postprocessors]
  [./elem_56]
    type = ElementalVariableValue
    variable = u
    elementid = 56
  [../]

  [./aux_elem_99]
    type = ElementalVariableValue
    variable = aux_u
    elementid = 99
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  dt = 0.01
  start_time = 0
  num_steps = 10
[]

[Outputs]
  interval = 3
  execute_on = 'initial timestep_end final'
[]

test/tests/outputs/iterative/output_step_window.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    start_step = 2
    end_step = 5
  [../]
[]

modules/richards/test/tests/dirac/bh_lumped_07.i

[Mesh]
  type = FileMesh
  file = bh07_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  sat_UO = Saturation
  seff_UO = Seff1VG
  SUPG_UO = SUPGstandard
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1000 10000'
    x = '100 1000'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[BCs]
  [./fix_outer]
    type = DirichletBC
    boundary = perimeter
    variable = pressure
    value = 1E7
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsLumpedMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh07.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    re_constant = 0.1594
    character = 2
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
    execute_on = 'initial timestep_end'
  [../]

  [./fluid_mass]
    type = RichardsMass
    variable = pressure
    execute_on = 'initial timestep_end'
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E7
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-11 0 0  0 1E-11 0  0 0 1E-11'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1000
  solve_type = NEWTON

  [./TimeStepper]
    # get only marginally better results for smaller time steps
    type = FunctionDT
    function = dts
  [../]

[]

[Outputs]
  file_base = bh_lumped_07
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

modules/phase_field/test/tests/flood_counter_aux_test/flood_aux.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  nz = 0

  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./bubble_map]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff forcing_1 forcing_2 forcing_3 forcing_4 dot'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing_1]
    type = GaussContForcing
    variable = u
    x_center = 1.0
    y_center = 1.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_2]
    type = GaussContForcing
    variable = u
    x_center = 20.0
    y_center = 39.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_3]
    type = GaussContForcing
    variable = u
    x_center = 39.0
    y_center = 20.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_4]
    type = GaussContForcing
    variable = u
    x_center = 15.0
    y_center = 15.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./mapper]
    type = FeatureFloodCountAux
    variable = bubble_map
    execute_on = timestep_end
    flood_counter = bubbles
  [../]
[]

[BCs]
  [./Periodic]
    [./x]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[UserObjects]
  [./bubbles]
    type = FeatureFloodCount
    variable = u
    threshold = 0.3
    execute_on = timestep_end
    outputs = none
    flood_entity_type = NODAL
  [../]
[]

[Executioner]
  active = ''

  type = Transient
  dt = 4.0
  num_steps = 5

  [./Adaptivity]
    refine_fraction = .40
    coarsen_fraction = .02
    max_h_level = 3
    error_estimator = KellyErrorEstimator
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/hcond01.i

# 0phase heat conduction
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./temp]
  [../]
[]

[ICs]
  [./temp]
    type = RandomIC
    variable = temp
    max = 1.0
    min = 0.0
  [../]
[]


[Kernels]
  [./heat_conduction]
    type = PorousFlowHeatConduction
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp'
    number_fluid_phases = 0
    number_fluid_components = 0
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '1.1 0.1 0.3 0.1 2.2 0 0.3 0 3.3'
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/phase_field/test/tests/grain_growth/thumb.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1000
  zmin = 0
  zmax = 0
  elem_type = QUAD4

  uniform_refine = 2
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
  v = 'gr0 gr1'
[]

[Variables]
  [./gr0]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = ThumbIC
      xcoord = 500.0
      height = 600.0
      width = 400.0
      invalue = 0.0
      outvalue = 1.0
    [../]
  [../]

  [./gr1]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = ThumbIC
      xcoord = 500.0
      height = 600.0
      width = 400.0
      invalue = 1.0
      outvalue = 0.0
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
  [../]
[]

[BCs]
  active = ' '

  [./Periodic]
    [./left_right]
      primary = 0
      secondary = 2
      translation = '0 1000 0'
    [../]

    [./top_bottom]
      primary = 1
      secondary = 3
      translation = '-1000 0 0'
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./gr_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_tol = 1.0e-4
  l_max_its = 30

  nl_max_its = 20
  nl_rel_tol = 1.0e-9

  start_time = 0.0
  num_steps = 10
  dt = 80.0

  [./Adaptivity]
    initial_adaptivity = 2
    refine_fraction = 0.8
    coarsen_fraction = 0.05
    max_h_level = 2
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  csv = true
  exodus = true
[]

test/tests/transfers/multiapp_interpolation_transfer/fromrestrictedsub_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  # The MultiAppInterpolationTransfer object only works with ReplicatedMesh
  parallel_type = replicated
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [elemental_from_sub]
    order = CONSTANT
    family = MONOMIAL
  []
  [nodal_from_sub]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0.05 0.5 0 0.55 0.5 0'
    input_files = fromrestrictedsub_sub.i
    output_in_position = true
  []
[]

[Transfers]
  [elemental_fromsub]
    type = MultiAppInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = elemental
    variable = elemental_from_sub
  []
  [nodal_fromsub]
    type = MultiAppInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = nodal
    variable = nodal_from_sub
  []
[]

modules/phase_field/test/tests/grain_growth/test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmin = 0
  xmax = 400
  ymin = 0
  ymax = 400
  zmin = 0
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 1
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalCircleGrainIC]
      radius = 300
      x = 400
      y = 0
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./gr1area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 5
  dt = 80.0

  [./Adaptivity]
    initial_adaptivity = 2
    refine_fraction = 0.8
    coarsen_fraction = 0.05
    max_h_level = 2
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  csv = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/volumetric_locking_verification/42_node.i

# Test for volumetric locking correction

# 2D cook's membrane problem with a trapezoid
# that is fixed at one end and is sheared at
# other end. Poisson's ratio is 0.4999.

# Using Quad4 elements and no volumetric locking,
# vertical displacement at top right corner is 3.78
# due to locking.

# Using Quad4 elements with volumetric locking, vertical
# dispalcement at top right corner is 7.78.

# Results match with Nakshatrala et al., Comp. Mech., 41, 2008.

# Check volumetric locking correction documentation for
# more details about this problem.

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = 42_node_side.e
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        add_variables = true
        strain = SMALL
        incremental = true
      [../]
    [../]
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
[]

[NodalKernels]
  [./y_force]
    type = ConstantRate
    variable = disp_y
    boundary = 2
    rate = 2.38095238095
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 250.0
    poissons_ratio = 0.4999
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]


[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  num_steps = 1
[]


[Postprocessors]
  [./a_disp_y]
    type = PointValue
    variable = disp_y
    point = '48.0 60.0 0.0'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

test/tests/auxkernels/old_older_material_aux/old_mat_in_aux.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./aux]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./old_mat_aux]
    type = OldMaterialAux
    property_name = prop
    variable = aux
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./func]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./mat]
    type = GenericFunctionMaterial
    prop_names = prop
    prop_values = func
    block = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/generalized_plane_strain/generalized_plane_strain_field.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = square.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./strain_zz]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./aux_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegralSM
    tensor = stress
    index = 2
  [../]
  [./min_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = min
  [../]
  [./max_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = max
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    temp = temp
  [../]
[]

[Kernels]
  [./solid_z]
    type = OutOfPlaneStress
    variable = strain_zz
    save_in = saved_z
    disp_x = disp_x
    disp_y = disp_y
    temp = temp
  [../]
[]

[Constraints]
  [./szz]
    type = EqualValueBoundaryConstraint
    variable = strain_zz
    master = '8'
    slave = 10
    penalty = 1e12
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]

  [./strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xx
    index = 0
  [../]
  [./strain_xy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xy
    index = 3
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_yy
    index = 1
  [../]
  [./strain_zz]
    type = MaterialTensorAux
    tensor = total_strain
    variable = aux_strain_zz
    index = 2
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0     1  100'
    y='0  0.00 0.00'
  [../]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    thermal_expansion = 0.02
    stress_free_temperature = 0.5
    temp = temp
    formulation = PlaneStrain
    strain_zz = strain_zz
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none


# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/rom_stress_update/2drz.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./temperature]
    initial_condition = 900.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    use_automatic_differentiation = true
  [../]
[]

[BCs]
  [./symmy]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./pressure_x]
    type = ADPressure
    variable = disp_x
    component = 0
    boundary = right
    constant = 3.1675e5
  [../]
  [./pressure_y]
    type = ADPressure
    variable = disp_y
    component = 1
    boundary = top
    constant = 6.336e5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 3.30e11
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ADComputeMultipleInelasticStress
    inelastic_models = rom_stress_prediction
  [../]
  [./rom_stress_prediction]
    type = SS316HLAROMANCEStressUpdateTest
    temperature = temperature
    initial_mobile_dislocation_density = 6.0e12
    initial_immobile_dislocation_density = 4.4e11
    outputs = all
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  nl_abs_tol = 1e-12
  automatic_scaling = true
  compute_scaling_once = false

  num_steps = 5
[]

[Postprocessors]
  [./effective_strain_avg]
    type = ElementAverageValue
    variable = effective_creep_strain
  [../]
  [./temperature]
    type = ElementAverageValue
    variable = temperature
  [../]
  [./mobile_dislocations]
    type = ElementAverageValue
    variable = mobile_dislocations
  [../]
  [./immobile_disloactions]
    type = ElementAverageValue
    variable = immobile_dislocations
  [../]
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/crystal_plasticity/crysp_cutback.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./rotout]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./gss1]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss1
    property = gss
    index = 0
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCrystalPlasticity
    block = 0
    gtol = 1e-2
    slip_sys_file_name = input_slip_sys.txt
    nss = 12
    num_slip_sys_flowrate_props = 2 #Number of properties in a slip system
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    hprops = '1.0 541.5 60.8 109.8 2.5'
    gprops = '1 4 60.8 5 8 60.8 9 12 60.8'
    tan_mod_type = exact
    gen_random_stress_flag = true
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'ux uy uz'
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./gss1]
    type = ElementAverageValue
    variable = gss1
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_factor_shift_type'
  petsc_options_value = 'nonzero'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 1.0
  dtmax = 10.0
  dtmin = 1e-5

  num_steps = 3
[]

[Outputs]
  file_base = crysp_cutback_out
  exodus = true
  csv = true
  gnuplot = true
[]

modules/xfem/test/tests/single_var_constraint_2d/stationary_jump.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.0'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0.5
    jump_flux = 0
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/tensor_mechanics/test/tests/ad_thermal_expansion_function/small_const.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function has a constant value,
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# This version of the test uses small deformation theory.  The results
# from the two models are identical.

[Mesh]
  file = 'blocks.e'
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
    use_automatic_differentiation = true
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ADComputeLinearElasticStress
  [../]
  [./thermal_expansion_strain1]
    type = ADComputeMeanThermalExpansionFunctionEigenstrain
    block = 1
    thermal_expansion_function = cte_func_mean
    thermal_expansion_function_reference_temperature = 0.5
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
  [./thermal_expansion_strain2]
    type = ADComputeInstantaneousThermalExpansionFunctionEigenstrain
    block = 2
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (t - tsf) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 1.0
               2 1.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = NEWTON
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/j2_plasticity_vs_LSH/LSH_mod.i

# Test designed to compare results and active time between SH/LinearStrainHardening
# material vs TM j2 plastic user object. As number of elements increases, TM
# active time increases at a much higher rate than SM. Testing at 4x4x4
# (64 elements).
#
# Original test located at:
# solid_mechanics/tests/LinearStrainHardening/LinearStrainHardening_test.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 4
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xx
    index = 0
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_yy
    index = 1
  [../]
  [./strain_zz]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_zz
    index = 2
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 't/60'
  [../]
[]

[Materials]
  [./constant]
    type = LinearStrainHardening
    block = 0
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
    yield_stress = 2.4e2
    hardening_constant = 0
    relative_tolerance = 1e-9
    absolute_tolerance = 1e-25
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-10
  l_tol = 1e-4
  start_time = 0.0
  end_time = 0.5
  dt = 0.01
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]
  [./strain_zz]
    type = ElementAverageValue
    variable = strain_zz
  [../]
[]

[Outputs]
  csv = true
  print_linear_residuals = false
  perf_graph = true
[]

modules/xfem/test/tests/second_order_elements/square_branch_quad9_2d.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD9
[]

[UserObjects]
  [./line_seg_cut_set_uo]
    type = LineSegmentCutSetUserObject
    cut_data = '-1.0000e-10   6.6340e-01   6.6340e-01  -1.0000e-10  0.0  1.0
                 3.3120e-01   3.3200e-01   1.0001e+00   3.3200e-01  1.0  2.0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
  [../]
[]

[Functions]
  [./right_disp_x]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
  [./top_disp_y]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionDirichletBC
    boundary = 1
    variable = disp_x
    function = right_disp_x
  [../]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = top_disp_y
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.2
  num_steps = 5000
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/postprocessors/num_nodes/num_nodes.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  nz = 0
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 1
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./u_aux]
    order = FIRST
    family = LAGRANGE
  [../]
  [./v_aux]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  dt = 1
  solve_type = PJFNK
[]

[Adaptivity]
  steps = 1
  marker = box
  max_h_level = 3
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = do_nothing
      type = BoxMarker
    [../]
  [../]
[]

[Postprocessors]
  [./num_nodes]
    type = NumNodes
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform23.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_max = sigma_mid (approximately),
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.25E-6*y*sin(t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 6
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./mc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    smoothing_tol = 5.0
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 30
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform23
  csv = true
[]

modules/tensor_mechanics/test/tests/multi/three_surface06.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 1.1E-6m in y direction and 1.0E-6 in z direction.
# trial stress_yy = 1.1 and stress_zz = 1.0
#
# Then SimpleTester1 and SimpleTester2 should activate and the algorithm will return to
# the corner stress_yy=1.0, stress_zz=0.5
# However, this will mean internal1 < 0, so SimpleTester1 will be deactivated and
# then the algorithm will return to
# stress_yy=0.8, stress_zz=0.7
# internal1 should be 0.0, and internal2 should be 0.3

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1.1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface06
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/stochastic_tools/test/tests/vectorpostprocessors/stochastic_results/master.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = SobolSampler
    num_rows = 3
    distributions = 'uniform_left uniform_right'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
  []
[]

[Transfers]
  [runner]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
  []
  [data]
    type = SamplerPostprocessorTransfer
    multi_app = sub
    sampler = sample
    to_vector_postprocessor = storage
    from_postprocessor = avg
  []
[]

[VectorPostprocessors]
  [storage]
    type = StochasticResults
    parallel_type = DISTRIBUTED
    samplers = sample
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  [out]
    type = CSV
    execute_on = FINAL
  []
[]

modules/tensor_mechanics/test/tests/jacobian/cto17.i

# Jacobian check for nonlinear, multi-surface plasticity.
# Returns to the plane of the tensile yield surface
#
# Plasticity models:
# Tensile with strength = 1MPa softening to 0.5MPa in 2E-2 strain
#
# Lame lambda = 0.5GPa.  Lame mu = 1GPa
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]



[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./linesearch]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ld]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./constr_added]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./linesearch]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = linesearch
  [../]
  [./ld]
    type = MaterialRealAux
    property = plastic_linear_dependence_encountered
    variable = ld
  [../]
  [./constr_added]
    type = MaterialRealAux
    property = plastic_constraints_added
    variable = constr_added
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int0
    index = 0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int1
    index = 1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int2
    index = 2
  [../]
[]

[Postprocessors]
  [./max_int0]
    type = ElementExtremeValue
    variable = int0
    outputs = console
  [../]
  [./max_int1]
    type = ElementExtremeValue
    variable = int1
    outputs = console
  [../]
  [./max_int2]
    type = ElementExtremeValue
    variable = int2
    outputs = console
  [../]
  [./max_iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./av_linesearch]
    type = ElementAverageValue
    variable = linesearch
    outputs = 'console csv'
  [../]
  [./av_ld]
    type = ElementAverageValue
    variable = ld
    outputs = 'console csv'
  [../]
  [./av_constr_added]
    type = ElementAverageValue
    variable = constr_added
    outputs = 'console csv'
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console csv'
  [../]
[]


[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
  [./tensile]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = ts
    yield_function_tolerance = 1.0E-6  # Note larger value
    shift = 1.0E-6                     # Note larger value
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.5E3 1E3'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-1 0.1 0.2  0.1 15 -0.3  0.2 -0.3 0'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-7

    plastic_models = 'tensile'
    max_NR_iterations = 5
    deactivation_scheme = 'safe'
    min_stepsize = 1
    tangent_operator = nonlinear
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]


[Outputs]
  file_base = cto17
  exodus = false
  csv = true
[]

modules/xfem/test/tests/corner_nodes_cut/sm/corner_edge_cut.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo1]
    type = LineSegmentCutUserObject
    cut_data = '-0.0 0.5 0.5 0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./line_seg_cut_uo2]
    type = LineSegmentCutUserObject
    cut_data = '0.5 0.5 1.0 0.7'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[BCs]
  [./top_x]
    type = DirichletBC
    boundary = 2
    variable = disp_x
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.1
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = -0.1
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/phase_field/test/tests/phase_field_kernels/CoupledAllenCahn.i

#
# Test the coupled Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 12
  ymax = 12
  elem_type = QUAD4
[]

[Variables]
  [./w]
  [../]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0.0
      y1 = 0.0
      radius = 6.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 3.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]

  [./ACBulk]
    type = CoupledAllenCahn
    variable = w
    v = eta
    f_name = F
  [../]

  [./W]
    type = Reaction
    variable = w
  [../]

  [./CoupledBulk]
    type = MatReaction
    variable = eta
    v = w
  [../]

  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = 1
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'L'
    prop_values = '1'
  [../]

  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta'
    function = '2 * eta^2 * (1-eta)^2 - 0.2*eta'
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'PJFNK'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 2
  dt = 0.5
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  hide = w
  file_base = AllenCahn_out
  exodus = true
[]

modules/phase_field/examples/grain_growth/grain_growth_2D_voronoi.i

# This simulation predicts GB migration of a 2D copper polycrystal with 15 grains
# Mesh adaptivity and time step adaptivity are used
# An AuxVariable is used to calculate the grain boundary locations
# Postprocessors are used to record time step and the number of grains
# We are not using the GrainTracker in this example so the number
# of order paramaters must match the number of grains.

[Mesh]
  # Mesh block.  Meshes can be read in or automatically generated
  type = GeneratedMesh
  dim = 2 # Problem dimension
  nx = 12 # Number of elements in the x-direction
  ny = 12 # Number of elements in the y-direction
  nz = 0 # Number of elements in the z-direction
  xmin = 0    # minimum x-coordinate of the mesh
  xmax = 1000 # maximum x-coordinate of the mesh
  ymin = 0    # minimum y-coordinate of the mesh
  ymax = 1000 # maximum y-coordinate of the mesh
  zmin = 0
  zmax = 0
  elem_type = QUAD4 # Type of elements used in the mesh
  uniform_refine = 3 # Initial uniform refinement of the mesh

  parallel_type = replicated # Periodic BCs
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = 15 # Number of grains
  var_name_base = gr # Base name of grains
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    grain_num = 15
    rand_seed = 42
    coloring_algorithm = bt # We must use bt to force the UserObject to assign one grain to each op
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[Variables]
  # Variable block, where all variables in the simulation are declared
  [./PolycrystalVariables]
    # Custom action that created all of the grain variables
    order = FIRST # element type used by each grain variable
    family = LAGRANGE
  [../]
[]

[AuxVariables]
#active = ''
  # Dependent variables
  [./bnds]
    # Variable used to visualize the grain boundaries in the simulation
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  # Kernel block, where the kernels defining the residual equations are set up.
  [./PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  [../]
[]

[AuxKernels]
#active = ''
  # AuxKernel block, defining the equations used to calculate the auxvars
  [./bnds_aux]
    # AuxKernel that calculates the GB term
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[BCs]
  # Boundary Condition block
  [./Periodic]
    [./top_bottom]
      auto_direction = 'x y' # Makes problem periodic in the x and y directions
    [../]
  [../]
[]

[Materials]
  [./CuGrGr]
    # Material properties
    type = GBEvolution # Quantitative material properties for copper grain growth.  Dimensions are nm and ns
    GBmob0 = 2.5e-6 #Mobility prefactor for Cu from Schonfelder1997
    GBenergy = 0.708 #GB energy for Cu from Schonfelder1997
    Q = 0.23 #Activation energy for grain growth from Schonfelder 1997
    T = 450 # K   #Constant temperature of the simulation (for mobility calculation)
    wGB = 14 # nm      #Width of the diffuse GB
  [../]
[]

[Postprocessors]
  active = 'dt '
  # Scalar postprocessors
  [./dt]
    # Outputs the current time step
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient # Type of executioner, here it is transient with an adaptive time step
  scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre    boomeramg      101                ds'

  l_max_its = 30 # Max number of linear iterations
  l_tol = 1e-4 # Relative tolerance for linear solves
  nl_max_its = 40 # Max number of nonlinear iterations
  nl_abs_tol = 1e-11 # Relative tolerance for nonlienar solves
  nl_rel_tol = 1e-8 # Absolute tolerance for nonlienar solves

  start_time = 0.0
  end_time = 4000

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 25 # Initial time step.  In this simulation it changes.
    optimal_iterations = 6 #Time step will adapt to maintain this number of nonlinear iterations
  [../]

  [./Adaptivity]
    # Block that turns on mesh adaptivity. Note that mesh will never coarsen beyond initial mesh (before uniform refinement)
    initial_adaptivity = 2 # Number of times mesh is adapted to initial condition
    refine_fraction = 0.7 # Fraction of high error that will be refined
    coarsen_fraction = 0.1 # Fraction of low error that will coarsened
    max_h_level = 4 # Max number of refinements used, starting from initial mesh (before uniform refinement)
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  [./console]
    type = Console
    max_rows = 20
  [../]
[]

examples/ex08_materials/ex08.i

[Mesh]
  file = reactor.e
  # Let's assign human friendly names to the blocks on the fly
  block_id = '1 2'
  block_name = 'fuel deflector'

  boundary_id = '4 5'
  boundary_name = 'bottom top'
[]

[Variables]
  [./diffused]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.5 # shortcut/convenience for setting constant initial condition
  [../]

  [./convected]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0 # shortcut/convenience for setting constant initial condition
  [../]
[]

[Kernels]
  # This Kernel consumes a real-gradient material property from the active material
  [./convection]
    type = ExampleConvection
    variable = convected
  [../]

  [./diff_convected]
    type = Diffusion
    variable = convected
  [../]

  [./example_diff]
    # This Kernel uses "diffusivity" from the active material
    type = ExampleDiffusion
    variable = diffused
  [../]

  [./time_deriv_diffused]
    type = TimeDerivative
    variable = diffused
  [../]

  [./time_deriv_convected]
    type = TimeDerivative
    variable = convected
  [../]
[]

[BCs]
  [./bottom_diffused]
    type = DirichletBC
    variable = diffused
    boundary = 'bottom'
    value = 0
  [../]

  [./top_diffused]
    type = DirichletBC
    variable = diffused
    boundary = 'top'
    value = 5
  [../]

  [./bottom_convected]
    type = DirichletBC
    variable = convected
    boundary = 'bottom'
    value = 0
  [../]

  [./top_convected]
    type = NeumannBC
    variable = convected
    boundary = 'top'
    value = 1
  [../]
[]

[Materials]
  [./example]
    type = ExampleMaterial
    block = 'fuel'
    diffusion_gradient = 'diffused'

    # Approximate Parabolic Diffusivity
    independent_vals = '0 0.25 0.5 0.75 1.0'
    dependent_vals = '1e-2 5e-3 1e-3 5e-3 1e-2'
  [../]

  [./example1]
    type = ExampleMaterial
    block = 'deflector'
    diffusion_gradient = 'diffused'

    # Constant Diffusivity
    independent_vals = '0 1.0'
    dependent_vals = '1e-1 1e-1'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  dt = 0.1
  num_steps = 10
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/mean_cap_TC/random03.i

# apply many random large deformations, checking that the algorithm returns correctly to
# the yield surface each time.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./max_yield_fcn]
    type = ElementExtremeValue
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console'
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'max_yield_fcn'
  [../]
[]

[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.1
    internal_limit = 0.1
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = -1.5
    value_residual = 0
    internal_limit = 0.1
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
    use_custom_returnMap = false
    use_custom_cto = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    max_NR_iterations = 2
    ep_plastic_tolerance = 1E-8
    plastic_models = cap
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random03
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/heat_convection/heat_convection_rz_tf_test.i

# Test cases for convective boundary conditions. TKLarson, 11/01/11, rev. 0.
# Input file for htc_2dtest0

# TKLarson
# 11/01/11
# Revision 0
#
# Goals of this test are:
#  1) show that the 'fluid' temperature for convective boundary condition
#    is behaving as expected/desired
#  2) show that expected results ensue from application of convective boundary conditions
# Convective boundary condition:
#  q = h*A*(Tw - Tf)
#  where
#    q - heat transfer rate (w)
#    h - heat transfer coefficient (w/m^2-K)
#    A - surface area (m^2)
#    Tw - surface temperature (K)
#    Tf - fluid temperature adjacent to the surface (K)
# The heat transfer coefficient (h) is input as a variable called 'rate'
# Tf is a two valued function specified by 'initial' and 'final' along with a variable
#  called 'duration,' the length of time in seconds that it takes initial to linearly ramp
#  to 'final.'

# The mesh for this test case is based on an ASTM standard for the so-called Brazillian Cylinder test
# (ASTM International, Standard Test Method for Splitting Tensile Strength of Cylindrical Concrete
# Specimens, C 496/C 496M-04, 2004) (because I already had a version of the model).  While the
# Brazillian Cylinder test is for dynamic tensile testing of concrete, the model works for the present
# purposes.  The model is 2-d RZ coordinates.
#
# Brazillian Cylinder sample dimensions:
#       L = 20.3 cm, 0.203 m, (8 in)
#       r = 5.08 cm, 0.0508 m, (2 in)

# Material properties are:
#   density = 2405.28 km/m^3
#   specific heat = 826.4 J/kg-K
#   thermal conductivity 1.937 w/m-K
#  alpha (thermal conductivity/(density*specific heat) is then 9.74e-7 m^2/s
#
# Initial cylinder temperature is room temperature 294.26 K (70 F)
# The initial fluid temperature is room temperature. We will ramp it to 477.6 K (400 F) in 10 minutes.
# We will use a very large h (1000000) to make the surface temperature mimick the fluid temperature.

# What we expect for this problem:
#  1) Use of h = 1000000 should cause the cylinder surface temperature to track the fluid temperature
#  2) The fluid temperature should rise from initial (294.26 K) to final (477.6 K) in 600 s.
#  3) 1) and 2) should prove that the Tf boundary condition is ramping as desired.
# Note, we do the above because there is no way to plot a variable that is not on a mesh node!

[Problem]
  coord_type = RZ
[]

[Mesh]    # Mesh Start
# 10cm x 20cm cylinder not so detailed mesh, 2 radial, 6 axial nodes
# Only one block (Block 1), all concrete
# Sideset 1 - top of cylinder, Sideset 2 - length of cylinder, Sideset 3 - bottom of cylinder
  file = heat_convection_rz_mesh.e
[]    # Mesh END

[Variables]  # Variables Start
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 294.26 # Initial cylinder temperature
  [../]

[]    # Variables END


[Kernels]  # Kernels Start
  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]

[]    # Kernels END


[BCs]    # Boundary Conditions Start
# Heat transfer coefficient on outer cylinder radius and ends
  [./convective_clad_surface]    # Convective Start
         type = ConvectiveFluxBC        # Convective flux, e.g. q'' = h*(Tw - Tf)
         boundary = '1 2 3'    # BC applied on top, along length, and bottom
         variable = temp
   rate = 1000000.   # convective heat transfer coefficient (w/m^2-K)[176000 "]
#         #  the above h is ~ infinity for present purposes
         initial = 294.26         # initial ambient (lab or oven) temperature (K)
         final = 477.6            # final ambient (lab or oven) temperature (K)
   duration = 600.   # length of time in seconds that it takes the ambient
         #     temperature to ramp from initial to final
  [../]          # Convective End

[]    # BCs END

[Materials]    # Materials Start
  [./thermal]
    type = HeatConductionMaterial
    block = 1
    specific_heat = 826.4
    thermal_conductivity = 1.937  # this makes alpha 9.74e-7 m^2/s
  [../]
  [./density]
    type = Density
    block = 1
    density = 2405.28
  [../]
[]      # Materials END

[Executioner]    # Executioner Start
   type = Transient
#   type = Steady

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


   petsc_options = '-snes_ksp_ew '
   petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type'
   petsc_options_value = '70 hypre boomeramg'
   l_max_its = 60
   nl_rel_tol = 1e-8
   nl_abs_tol = 1e-10
   l_tol = 1e-5

   start_time = 0.0
  dt = 60.
  num_steps = 20  # Total run time 1200 s

[]      # Executioner END

[Outputs]    # Output Start
  # Output Start
  file_base = out_rz_tf
  exodus = true
[]      # Output END
#      # Input file END

modules/peridynamics/test/tests/auxkernels/planestrain_thermomechanics_ranktwotensor_OSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp

  poissons_ratio = 0.3
  youngs_modulus = 1e6
  thermal_expansion_coeff = 0.0002
  stress_free_temperature = 0.0
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 8
    ny = 8
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./tstrain_xx]
    order = FIRST
    family = LAGRANGE
  [../]
  [./tstrain_yy]
    order = FIRST
    family = LAGRANGE
  [../]
  [./tstrain_zz]
    order = FIRST
    family = LAGRANGE
  [../]
  [./tstrain_xy]
    order = FIRST
    family = LAGRANGE
  [../]

  [./mstrain_xx]
    order = FIRST
    family = LAGRANGE
  [../]
  [./mstrain_yy]
    order = FIRST
    family = LAGRANGE
  [../]
  [./mstrain_zz]
    order = FIRST
    family = LAGRANGE
  [../]
  [./mstrain_xy]
    order = FIRST
    family = LAGRANGE
  [../]


  [./stress_xx]
    order = FIRST
    family = LAGRANGE
  [../]
  [./stress_yy]
    order = FIRST
    family = LAGRANGE
  [../]
  [./stress_zz]
    order = FIRST
    family = LAGRANGE
  [../]
  [./stress_xy]
    order = FIRST
    family = LAGRANGE
  [../]

  [./von_mises]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = ORDINARY_STATE
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]

  [./tstrain_xx]
    type = NodalRankTwoPD
    variable = tstrain_xx
    rank_two_tensor = total_strain
    output_type = component
    index_i = 0
    index_j = 0
  [../]
  [./tstrain_yy]
    type = NodalRankTwoPD
    variable = tstrain_yy
    rank_two_tensor = total_strain
    output_type = component
    index_i = 1
    index_j = 1
  [../]
  [./tstrain_zz]
    type = NodalRankTwoPD
    variable = tstrain_zz
    rank_two_tensor = total_strain
    output_type = component
    index_i = 2
    index_j = 2
  [../]
  [./tstrain_xy]
    type = NodalRankTwoPD
    variable = tstrain_xy
    rank_two_tensor = total_strain
    output_type = component
    index_i = 0
    index_j = 1
  [../]

  [./mstrain_xx]
    type = NodalRankTwoPD
    variable = mstrain_xx
    rank_two_tensor = mechanical_strain
    output_type = component
    index_i = 0
    index_j = 0
  [../]
  [./mstrain_yy]
    type = NodalRankTwoPD
    variable = mstrain_yy
    rank_two_tensor = mechanical_strain
    output_type = component
    index_i = 1
    index_j = 1
  [../]
  [./mstrain_zz]
    type = NodalRankTwoPD
    variable = mstrain_zz
    rank_two_tensor = mechanical_strain
    output_type = component
    index_i = 2
    index_j = 2
  [../]
  [./mstrain_xy]
    type = NodalRankTwoPD
    variable = mstrain_xy
    rank_two_tensor = mechanical_strain
    output_type = component
    index_i = 0
    index_j = 1
  [../]

  [./stress_xx]
    type = NodalRankTwoPD
    variable = stress_xx
    rank_two_tensor = stress
    output_type = component
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = NodalRankTwoPD
    variable = stress_yy
    rank_two_tensor = stress
    output_type = component
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = NodalRankTwoPD
    variable = stress_zz
    rank_two_tensor = stress
    output_type = component
    index_i = 2
    index_j = 2
  [../]
  [./stress_xy]
    type = NodalRankTwoPD
    variable = stress_xy
    rank_two_tensor = stress
    output_type = component
    index_i = 0
    index_j = 1
  [../]

  [./vonmises]
    type = NodalRankTwoPD
    variable = von_mises
    rank_two_tensor = stress
    output_type = scalar
    scalar_type = VonMisesStress
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 'x*x+y*y'
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    boundary = 1003
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 1000
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialOSPD
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  file_base = planestrain_thermomechanics_ranktwotensor_OSPD
[]

test/tests/transfers/multiapp_variable_value_sample_transfer/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_master]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/functional_expansion_tools/examples/3D_volumetric_Cartesian_different_submesh/sub.i

# Derived from the example '3D_volumetric_Cartesian' with the following differences:
#
#   1) The number of x and y divisions in the sub app is not the same as the master app
#   2) The subapp mesh is skewed in x and z
[Mesh]
  type = GeneratedMesh
  dim = 3

  xmin = 0.0
  xmax = 10.0
  nx = 23
  bias_x = 1.2

  ymin = 1.0
  ymax = 11.0
  ny = 33

  zmin = 2.0
  zmax = 12.0
  nz = 35
  bias_z = 0.8
[]

# Non-copy transfers only work with AuxVariable, but nothing will be solved without a variable
# defined. The solution is to define an empty variable tha does nothing, but causes MOOSE to solve
# the AuxKernels that we need.
[Variables]
  [./empty]
  [../]
[]

[AuxVariables]
  [./s]
    order = FIRST
    family = LAGRANGE
  [../]
  [./m_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

# We must have a kernel for every variable, hence this null kernel to match the variable 'empty'
[Kernels]
  [./null_kernel]
    type = NullKernel
    variable = empty
  [../]
[]

[AuxKernels]
  [./reconstruct_m_in]
    type = FunctionSeriesToAux
    function = FX_Basis_Value_Sub
    variable = m_in
  [../]
  [./calculate_s] # Something to make 's' change each time, but allow a converging solution
    type = ParsedAux
    variable = s
    args = m_in
    function = '2*exp(-m_in/0.8)'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3   4   5'
    physical_bounds = '0.0  10.0    1.0 11.0    2.0 12.0'
    x = Legendre
    y = Legendre
    z = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Sub
    variable = s
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer/errors/master_missing_control.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_left uniform_right'
    execute_on = 'initial timestep_end'
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub_missing_control.i
    sampler = sample
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

test/tests/multiapps/loose_couple_time_adapt/adaptiveDT.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
[]

[Variables]

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 0.006
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.001
    optimal_iterations = 6
  [../]
  nl_abs_tol = 1.0e-8
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/tosub_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  elem_type = QUAD8
[]

[Variables]
  [u]
    family = LAGRANGE
    order = FIRST
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[AuxVariables]
  [u_elemental]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[AuxKernels]
  [fun_aux]
    type = FunctionAux
    function = 'x + y'
    variable = u_elemental
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0.48 0.01 0'
    input_files = tosub_sub.i
  []
[]

[Transfers]
  [to_sub_nodal_to_nodal]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = nodal_source_from_master_nodal
  []
  [to_sub_nodal_to_elemental]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = nodal_source_from_master_elemental
  []
  [to_sub_elemental_to_nodal]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u_elemental
    variable = elemental_source_from_master_nodal
  []
  [to_sub_elemental_to_elemental]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u_elemental
    variable = elemental_source_from_master_elemental
  []
[]

modules/combined/test/tests/internal_volume/rz_cone.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a cone.
#
# The mesh is composed of one block (1).  The height is 3/pi, and the radius
#   is 1.  Thus, the volume is 1/3*pi*r^2*h = 1.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = meshes/rz_cone.e
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e4
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    volumetric_locking_correction = true
    incremental = true
    strain = FINITE
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./Pressure]
    [./fred]
      boundary = 1
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  nl_abs_tol = 1e-9

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 1
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

test/tests/multiapps/multiple_position_files/sub2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/adaptive_timestepping/adapt_tstep_function_change.i

# This is a test designed to evaluate the cabability of the
# IterationAdaptiveDT TimeStepper to adjust time step size according to
# a function.  For example, if the power input function for a BISON
# simulation rapidly increases or decreases, the IterationAdaptiveDT
# TimeStepper should take time steps small enough to capture the
# oscillation.

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  order = FIRST
  family = LAGRANGE
  block = 1
[]

[Mesh]
  file = 1hex8_10mm_cube.e
[]

[Functions]
  [./Fiss_Function]
    type = PiecewiseLinear
    x = '0 1e6  2e6  2.001e6 2.002e6'
    y = '0 3e8  3e8  12e8    0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

  [./temp]
    initial_condition = 300.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    volumetric_locking_correction = true
    incremental = true
    eigenstrain_names = thermal_expansion
    decomposition_method = EigenSolution
    add_variables  = true
    generate_output = 'vonmises_stress'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]

  [./heat_source]
     type = HeatSource
     variable = temp
     value = 1.0
     function = Fiss_Function
  [../]
[]

[BCs]
  [./bottom_temp]
    type = DirichletBC
    variable = temp
    boundary = 1
    value = 300
  [../]
  [./top_bottom_disp_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1'
    value = 0
  [../]
  [./top_bottom_disp_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1'
    value = 0
  [../]
  [./top_bottom_disp_z]
    type = DirichletBC
    variable = disp_z
    boundary = '1'
    value = 0
  [../]
[]

[Materials]
 [./thermal]
    type = HeatConductionMaterial
    temp = temp
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 300e6
    poissons_ratio = .3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 5e-6
    stress_free_temperature = 300.0
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]

  [./density]
    type = Density
    density = 10963.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  verbose = true
  nl_abs_tol = 1e-10
  start_time = 0.0
  num_steps = 50000
  end_time = 2.002e6
  [./TimeStepper]
    type = IterationAdaptiveDT
    timestep_limiting_function = Fiss_Function
    max_function_change = 3e7
    dt = 1e6
  [../]
[]

[Postprocessors]
  [./Temperature_of_Block]
    type = ElementAverageValue
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./vonMises]
    type = ElementAverageValue
    variable = vonmises_stress
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/phase_field/test/tests/initial_conditions/IsolatedBoundingBoxIC_2D.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  xmin = 0
  xmax = 400
  ny = 10
  ymin = 0
  ymax = 100
[]

[Problem]
  solve = false
[]

[Variables]
  [./c]
  [../]
[]

[ICs]
  [./c]
    type = IsolatedBoundingBoxIC
    variable = c
    smaller_coordinate_corners = '20 20 0 170 50 0 320 70 0'
    larger_coordinate_corners = '150 30 0 300 60 0 380 80 0'
    inside = '0.2 0.5 0.8'
    outside = 1
    int_width = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       ilu            nonzero'
  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-11

  num_steps = 1
  dt = 1e-5
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/free_energy_material/MathFreeEnergy.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c]
    type = SmoothCircleIC
    variable = c
    x1 = 25.0
    y1 = 25.0
    radius = 6.0
    invalue = 1.0
    outvalue = -0.8
    int_width = 4.0
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CahnHilliard
    variable = c
    mob_name = M
    f_name = F
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
  [../]
  [./free_energy]
    type = MathFreeEnergy
    f_name = F
    c = c
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 20
  l_tol = 1.0e-5
  nl_max_its = 40
  nl_rel_tol = 5.0e-14

  start_time = 0.0
  num_steps = 1
  dt = 2.0
[]

[Outputs]
  execute_on = 'timestep_end'
  [./oversample]
    type = Exodus
    refinements = 2
  [../]
[]

modules/level_set/examples/circle/circle_16.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 16
  ny = 16
[]

[Variables]
  [./phi]
  [../]
[]

[AuxVariables]
  [./vel_x]
    initial_condition = 3
  [../]
  [./vel_y]
    initial_condition = 3
  [../]
[]

[ICs]
  [./phi_ic]
    type = FunctionIC
    function = phi_exact
    variable = phi
  [../]
[]

[Functions]
  [./phi_exact]
    type = LevelSetOlssonBubble
    epsilon = 0.05
    center = '0.5 0.5 0'
    radius = 0.15
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = phi
      auto_direction = 'x y'
    [../]
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = phi
  [../]

  [./advection]
    type = LevelSetAdvection
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  [../]
[]

[Postprocessors]
  [./cfl]
    type = LevelSetCFLCondition
    velocity_x = vel_x
    velocity_y = vel_y
    execute_on = 'initial'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  start_time = 0
  end_time = 1
  scheme = crank-nicolson
  petsc_options_iname = '-pc_type -pc_sub_type'
  petsc_options_value = 'asm      ilu'
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = cfl
    scale = 0.8
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform_cosserat4.i

# Plastic deformation.  Layered Cosserat with parameters:
# Young = 10.0
# Poisson = 0.25
# layer_thickness = 10
# joint_normal_stiffness = 2.5
# joint_shear_stiffness = 2.0
# These give the following nonzero components of the elasticity tensor:
# E_0000 = E_1111 = 1.156756756757E+01
# E_0011 = E_1100 = 3.855855855856E+00
# E_2222 = E_pp = 8.108108108108E+00
# E_0022 = E_1122 = E_2200 = E_2211 = 2.702702702703E+00
# G = E_0101 = E_0110 = E_1001 = E_1010 = 4
# Gt = E_qq = E_0202 = E_0220 = E_2002 = E_1212 = E_1221 = E_2112 = 3.333333333333E+00
# E_2020 = E_2121 = 3.666666666667E+00
# They give the following nonzero components of the bending rigidity tensor:
# D = 8.888888888889E+02
# B_0101 = B_1010 = 8.080808080808E+00
# B_0110 = B_1001 = -2.020202020202E+00
#
# Applying the following deformation to the zmax surface of a unit cube:
# disp_x = 32*t/Gt
# disp_y = 24*t/Gt
# disp_z = 10*t/E_2222
# but leaving wc_x and wc_y unfixed
# yields the following strains:
# strain_xz = 32*t/Gt - wc_y = 9.6*t - wc_y
# strain_zx = wc_y
# strain_yz = 24*t/Gt + wc_x = 7.2*t + wc_x
# strain_zy = - wc_x
# strain_zz = 10*t/E_2222 = 1.23333333*t
# and all other components, and the curvature, are zero (assuming
# wc is uniform over the cube).
#
# When wc=0, the nonzero components of stress are therefore:
# stress_xx = stress_yy = 3.33333*t
# stress_xz = stress_zx = 32*t
# stress_yz = stress_zy = 24*t
# stress_zz = 10*t
# The moment stress is zero.
# So q = 40*t and p = 10*t
#
# Use tan(friction_angle) = 0.5 and tan(dilation_angle) = E_qq/Epp/2, and cohesion=20,
# the system should return to p=0, q=20, ie stress_zz=0, stress_xz=16,
# stress_yz=12 on the first time step (t=1)
# and
# stress_xx = stress_yy = 0
# and
# stress_zx = 32, and stress_zy = 24.
# This has resulted in a non-symmetric stress tensor, and there is
# zero moment stress, so the system is not in equilibrium.  A
# nonzero wc must therefore be generated.
#
# The obvious choice of wc is such that stress_zx = 16 and
# stress_zy = 12, because then the final returned stress will
# be symmetric.  This gives
# wc_y = - 48
# wc_x = 36
# At t=1, the nonzero components of stress are
# stress_xx = stress_yy = 3.33333
# stress_xz = 32, stress_zx = 16
# stress_yz = 24, stress_zy = 12
# stress_zz = 10*t
# The moment stress is zero.
#
# The returned stress is
# stress_xx = stress_yy = 0
# stress_xz = stress_zx = 16
# stress_yz = stress_zy = 12
# stress_zz = 0
# The total strains are given above.
# Since q returned from 40 to 20, plastic_strain_xz = 9.6/2 = 4.8
# and plastic_strain_yz = 7.2/2 = 3.6.
# Since p returned to zero, all of the total strain_zz is
# plastic, ie plastic_strain_zz = 1.23333
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 32*t/3.333333333333E+00
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 24*t/3.333333333333E+00
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 10*t/8.108108108108E+00
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yx
    index_i = 1
    index_j = 0
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zx
    index_i = 2
    index_j = 0
  [../]
  [./strainp_zy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zy
    index_i = 2
    index_j = 1
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
  [./straint_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xx
    index_i = 0
    index_j = 0
  [../]
  [./straint_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xy
    index_i = 0
    index_j = 1
  [../]
  [./straint_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xz
    index_i = 0
    index_j = 2
  [../]
  [./straint_yx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yx
    index_i = 1
    index_j = 0
  [../]
  [./straint_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yy
    index_i = 1
    index_j = 1
  [../]
  [./straint_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yz
    index_i = 1
    index_j = 2
  [../]
  [./straint_zx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zx
    index_i = 2
    index_j = 0
  [../]
  [./straint_zy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zy
    index_i = 2
    index_j = 1
  [../]
  [./straint_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zz
    index_i = 2
    index_j = 2
  [../]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./wc_x]
    type = PointValue
    point = '0 0 0'
    variable = wc_x
  [../]
  [./wc_y]
    type = PointValue
    point = '0 0 0'
    variable = wc_y
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yx]
    type = PointValue
    point = '0 0 0'
    variable = stress_yx
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zx]
    type = PointValue
    point = '0 0 0'
    variable = stress_zx
  [../]
  [./s_zy]
    type = PointValue
    point = '0 0 0'
    variable = stress_zy
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./c_s_xx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xx
  [../]
  [./c_s_xy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xy
  [../]
  [./c_s_xz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xz
  [../]
  [./c_s_yx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yx
  [../]
  [./c_s_yy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yy
  [../]
  [./c_s_yz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yz
  [../]
  [./c_s_zx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zx
  [../]
  [./c_s_zy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zy
  [../]
  [./c_s_zz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xz
  [../]
  [./strainp_yx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yx
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yz
  [../]
  [./strainp_zx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zx
  [../]
  [./strainp_zy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zy
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = straint_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = straint_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = straint_xz
  [../]
  [./straint_yx]
    type = PointValue
    point = '0 0 0'
    variable = straint_yx
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = straint_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = straint_yz
  [../]
  [./straint_zx]
    type = PointValue
    point = '0 0 0'
    variable = straint_zx
  [../]
  [./straint_zy]
    type = PointValue
    point = '0 0 0'
    variable = straint_zy
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = straint_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 20
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 2.055555555556E-01
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 10.0
    poisson = 0.25
    layer_thickness = 10.0
    joint_normal_stiffness = 2.5
    joint_shear_stiffness = 2.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
  [../]
  [./admissible]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneCosseratStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-5
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  end_time = 1
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform_cosserat4
  csv = true
[]

modules/porous_flow/test/tests/fluidstate/waterncg_ic.i

# Tests correct calculation of z (total mass fraction of NCG summed over all
# phases) using the PorousFlowFluidStateIC initial condition. Once z is
# calculated by the initial condition, the thermophysical properties are calculated
# and the resulting gas saturation should be equal to that given in the intial condition

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  temperature_unit = Celsius
[]

[Variables]
  [./pgas]
    initial_condition = 1e6
  [../]
  [./z]
  [../]
[]

[ICs]
  [./z]
    type = PorousFlowFluidStateIC
    saturation = 0.5
    gas_porepressure = pgas
    temperature = 50
    variable = z
    fluid_state = fs
  [../]
[]

[AuxVariables]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation_water
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowWaterNCG
    water_fp = water
    gas_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    fluid_state = fs
    capillary_pressure = pc
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./sg]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_gas
    execute_on = 'initial timestep_end'
  [../]
  [./sw]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_water
    execute_on = 'initial timestep_end'
  [../]
  [./z]
    type = ElementIntegralVariablePostprocessor
    variable = z
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  csv = true
[]

test/tests/controls/time_periods/aux_scalar_kernels/control_different.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux0]
    family = SCALAR
  [../]
  [./aux1]
    family = SCALAR
  [../]
[]

[Functions]
  [./func]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxScalarKernels]
  [./scalar_aux0]
    type = FunctionScalarAux
    variable = aux0
    function = func
  [../]
  [./scalar_aux1]
    type = FunctionScalarAux
    variable = aux1
    function = func
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

[Controls]
  [./damping_control]
    type = TimePeriod
    disable_objects = 'AuxScalarKernels/scalar_aux0 */scalar_aux1'
    start_time      = '0.25 0.45'
    end_time        = '0.55 0.75'
    execute_on = 'initial timestep_begin'
  [../]
[]

modules/tensor_mechanics/test/tests/initial_stress/except02.i

# Exception test: the incorrect number of initial stress AuxVariables are supplied

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -10
  zmax = 0
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1 2 3 4 5 6 7 8 9'
    initial_stress_aux = '1 2 3'
    eigenstrain_name = ini_stress
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]


[Executioner]
  num_steps = 1
  solve_type = NEWTON
  type = Transient
[]

modules/tensor_mechanics/test/tests/ad_elastic/rspherical_incremental_small_elastic-noad.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 5
[]

[Problem]
  coord_type = RSPHERICAL
[]

[GlobalParams]
  displacements = 'disp_r'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = StressDivergenceRSphericalTensors
    component = 0
    variable = disp_r
  [../]
[]

[BCs]
  [./center]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
  [./strain]
    type = ComputeRSphericalIncrementalStrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
  nl_max_its = 200
[]

[Outputs]
  exodus = true
  file_base = rspherical_incremental_small_elastic_out
[]

test/tests/misc/check_error/bad_enum_test.i

[Mesh]
  dim = 2
  file = square.e
  uniform_refine = 3
[]

[Variables]
  active = 'u v'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'udiff uconv uie vdiff vconv vie'

  [./udiff]
    type = Diffusion
    variable = u
  [../]

  [./uconv]
    type = Convection
    variable = u
    velocity = '10 1 0'
  [../]

  [./uie]
    type = TimeDerivative
    variable = u
  [../]

  [./vdiff]
    type = Diffusion
    variable = v
  [../]

  [./vconv]
    type = Convection
    variable = v
    velocity = '-10 1 0'
  [../]

  [./vie]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  active = 'uleft uright vleft vright'

  [./uleft]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./uright]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]

  [./vleft]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 1
  [../]

  [./vright]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 2
  dt = .1

  [./Adaptivity]
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
    error_estimator = PatchRecoveryFooBar   # This is a bad error estimator
  [../]
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/frictionless_penalty.i

[Mesh]
  file = blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e7
    poissons_ratio = 0.3
  [../]
  [./right]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    system = Constraint
    master = 2
    slave = 3
    model = frictionless
    formulation = penalty
    penalty = 1e+7
  [../]
[]

modules/porous_flow/examples/tutorial/08_KT.i

# Unsaturated Darcy-Richards flow
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    input = annular
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
  [../]
[]

[PorousFlowUnsaturated]
  porepressure = porepressure
  coupling_type = Hydro
  gravity = '0 0 0'
  fp = the_simple_fluid
  relative_permeability_exponent = 3
  relative_permeability_type = Corey
  residual_saturation = 0.1
  van_genuchten_alpha = 1E-6
  van_genuchten_m = 0.6
  stabilization = KT
  flux_limiter_type = None
[]

[BCs]
  [./production]
    type = PorousFlowSink
    variable = porepressure
    fluid_phase = 0
    flux_function = 1E-2
    use_relperm = true
    boundary = injection_area
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      viscosity = 1.0E-3
      density0 = 1000.0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1E-14 0 0   0 1E-14 0   0 0 1E-14'
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityConst
    block = caps
    permeability = '1E-15 0 0   0 1E-15 0   0 0 1E-16'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E5
  dt = 1E5
  nl_rel_tol = 1E-14
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/MultiSmoothCircleIC/latticesmoothcircleIC_test.i

[Mesh]

  type = GeneratedMesh
  dim = 3
  nx = 22
  ny = 22
  nz = 22
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 100
  zmin = 0
  zmax = 100
  elem_type = HEX8

[]

[Variables]

  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./c]
     type = LatticeSmoothCircleIC
     variable = c
     invalue = 1.0
     outvalue = 0.0001
     circles_per_side = '3 3 3'
     pos_variation = 0.0
     radius = 10.0
     int_width = 12.0
     radius_variation = 0.2
     radius_variation_type = uniform
  [../]
[]

[Kernels]
active = 'ie_c diff'

  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]

  [./diff]
    type = MatDiffusion
    variable = c
    diffusivity = D_v
  [../]
[]

[BCs]

[]

[Materials]
active = 'Dv'

  [./Dv]
    type = GenericConstantMaterial
    prop_names = D_v
    prop_values = 0.074802
  [../]
[]

[Postprocessors]
  active = 'bubbles'

  [./bubbles]
    type = FeatureFloodCount
    variable = c
    execute_on = 'initial timestep_end'
    flood_entity_type = NODAL
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'




  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 101 ds'

  l_max_its = 20
  l_tol = 1e-4

  nl_max_its = 20
  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-11

  start_time = 0.0
  num_steps =1
  dt = 100.0
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/dirackernels/squarepulse1.i

# Test PorousFlowSquarePulsePointSource DiracKernel

[Mesh]
  type = GeneratedMesh
  dim = 2
  bias_x = 1.1
  bias_y = 1.1
  ymax = 1
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = pp
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
[]

[Postprocessors]
  [./total_mass]
    type = PorousFlowFluidMass
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1e-14
  dt = 200
  end_time = 2000
[]

[Outputs]
  perf_graph = true
  file_base = squarepulse1
  csv = true
  execute_on = 'initial timestep_end'
  [./con]
    output_linear = true
    type = Console
  [../]
[]

[ICs]
  [./PressureIC]
    variable = pp
    type = ConstantIC
    value = 20e6
  [../]
[]

[DiracKernels]
  [./sink1]
    type = PorousFlowSquarePulsePointSource
    start_time = 100
    end_time = 300
    point = '0.5 0.5 0'
    mass_flux = -0.1
    variable = pp
  [../]
  [./sink]
    type = PorousFlowSquarePulsePointSource
    start_time = 600
    end_time = 1400
    point = '0.5 0.5 0'
    mass_flux = -0.1
    variable = pp
  [../]
  [./source]
    point = '0.5 0.5 0'
    start_time = 1500
    mass_flux = 0.2
    end_time = 2000
    variable = pp
    type = PorousFlowSquarePulsePointSource
  [../]
[]

modules/combined/test/tests/gap_heat_transfer_htonly/sphere3D.i

#
# 3D Spherical Gap Heat Transfer Test.
#
# This test exercises 3D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of an inner solid sphere of radius = 1 unit, and outer
# hollow sphere with an inner radius of 2. In other words, the gap between
# them is 1 radial unit in length.
#
# The conductivity of both spheres is set very large to achieve a uniform
# temperature in each sphere. The temperature of the center node of the
# inner sphere is ramped from 100 to 200 over one time unit. The
# temperature of the outside of the outer, hollow sphere is held fixed
# at 100.
#
# A simple analytical solution is possible for the integrated heat flux
# between the inner and outer spheres:
#
#  Integrated Flux = (T_left - T_right) * (gapK/(r^2*((1/r1)-(1/r2)))) * Area
#
# For gapK = 1 (default value)
#
# The area is taken as the area of the slave (inner) surface:
#
# Area = 4 * pi * 1^2 (4*pi*r^2)
#
# The integrated heat flux across the gap at time 1 is then:
#
# 4*pi*k*delta_T/((1/r1)-(1/r2))
# 4*pi*1*100/((1/1) - (1/2)) =  2513.3 watts
#
# For comparison, see results from the integrated flux post processors.
# This simulation makes use of symmetry, so only 1/8 of the spheres is meshed
# As such, the integrated flux from the post processors is 1/8 of the total,
# or 314.159 watts... i.e. 100*pi.
# The value coming from the post processor is slightly less than this
# but converges as mesh refinement increases.
#
# Simulating contact is challenging. Regression tests that exercise
# contact features can be difficult to solve consistently across multiple
# platforms. While designing these tests, we felt it worth while to note
# some aspects of these tests. The following applies to:
# sphere3D.i, sphere2DRZ.i, cyl2D.i, and cyl3D.i.
# 1. We decided that to perform consistently across multiple platforms we
# would use very small convergence tolerance. In this test we chose an
# nl_rel_tol of 1e-12.
# 2. Due to such a high value for thermal conductivity (used here so that the
# domains come to a uniform temperature) the integrated flux at time = 0
# was relatively large (the value coming from SideIntegralFlux =
#  -_diffusion_coef[_qp]*_grad_u[_qp]*_normals[_qp] where the diffusion coefficient
# here is thermal conductivity).
# Even though _grad_u[_qp] is small, in this case the diffusion coefficient
# is large. The result is a number that isn't exactly zero and tends to
# fail exodiff. For this reason the parameter execute_on = initial should not
# be used. That parameter is left to default settings in these regression tests.
#
[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = sphere3D.e
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1'
    y = '100 200'
  [../]
[]

[Variables]
  [./temp]
   initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_conductance]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat_conduction]
    type = HeatConduction
    variable = temp
  [../]
[]


[AuxKernels]
  [./gap_cond]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_conductance
    boundary = 2
  [../]
[]

[Materials]
  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 100000000.0
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
    gap_conductivity = 1
    quadrature = true
    gap_geometry_type = SPHERE
    sphere_origin = '0 0 0'
  [../]
[]

[BCs]
  [./mid]
    type = FunctionDirichletBC
    boundary = 5
    variable = temp
    function = temp
  [../]
  [./temp_far_right]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  dt = 1
  dtmin = 0.01
  end_time = 1

  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-7

  [./Quadrature]
     order = fifth
     side_order = seventh
  [../]
[]

[Outputs]
  exodus = true
  [./Console]
    type = Console
  [../]
[]

[Postprocessors]
  [./temp_left]
    type = SideAverageValue
    boundary = 2
    variable = temp
  [../]

  [./temp_right]
    type = SideAverageValue
    boundary = 3
    variable = temp
  [../]

  [./flux_left]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
  [../]

  [./flux_right]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
  [../]
[]

test/tests/functions/vector_postprocessor_function/vector_postprocessor_function.i

#This function linearly interpolates the data generated by a vector post
#processor. The purpose is to have a function take points and a field variable
#(aux or primary) as arguments.
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 4
  xmin = 0.0
  xmax = 0.004
  ymin = 0.0
  ymax = 0.008
[]

[Variables]
  [./u]
    initial_condition = 0
  [../]
[]

[AuxVariables]
  [./v]
    initial_condition = 1
  [../]
[]

[Functions]
  [./ramp_u]
    type = ParsedFunction
    value = 't'
  [../]
  [./point_value_function_u]
    type = VectorPostprocessorFunction
    component = 1
    argument_column = y
    value_column = u
    vectorpostprocessor_name = point_value_vector_postprocessor_u
  [../]
  [./line_value_function_v]
    type = VectorPostprocessorFunction
    component = 1
    argument_column = y
    value_column = v
    vectorpostprocessor_name = line_value_vector_postprocessor_v
  [../]
  [./function_v]
    type = PiecewiseLinear
    x = '0 0.008'
    y = '1 2'
    axis = y
  [../]
[]

[Kernels]
  [./diffusion_u]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
[./aux_v]
  type = FunctionAux
  variable = v
  function = function_v
[../]
[]

[BCs]
  [./top_u]
    type = FunctionDirichletBC
    boundary = top
    variable = u
    function = ramp_u
  [../]
  [./bottom_u]
    type = DirichletBC
    boundary = bottom
    variable = u
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package -ksp_gmres_restart'
  petsc_options_value = ' lu       superlu_dist                 51'
  line_search = 'none'
  l_max_its = 50
  l_tol = 1e-3
  nl_max_its = 20
  nl_rel_tol = 1e-4
  nl_abs_tol = 1e-6
  start_time = 0
  num_steps = 1
  dt = 1
[]
[Postprocessors]
  [./point_value_postprocessor_u]
    type = FunctionValuePostprocessor
    function = point_value_function_u
    point = '0.002 0.004 0'
  [../]
  [./line_value_postprocessor_v]
    type = FunctionValuePostprocessor
    function = line_value_function_v
    point = '0.002 0.004 0'
  [../]
  [./postprocessor_average_u]
    type = ElementAverageValue
    variable = u
  [../]
  [./postprocessor_average_v]
    type = ElementAverageValue
    variable = v
  [../]
[]
[VectorPostprocessors]
  [./point_value_vector_postprocessor_u]
    type = PointValueSampler
    variable = u
    points = '0 0.001 0 0 0.004 0 0 0.008 0'
    #points = '0.001 0 0 0.002 0 0'
    sort_by = y
    execute_on = linear
  [../]
  [./line_value_vector_postprocessor_v]
    type = LineValueSampler
    variable = v
    start_point = '0 0.001 0'
    end_point = '0 0.008 0'
    num_points = 5
    sort_by = y
    execute_on = linear
  [../]
[]
[Outputs]
  interval = 1
  csv = false
  exodus = true
  file_base = out
  [./console]
    type = Console
    output_linear = true
    max_rows = 10
  [../]
[]

modules/xfem/test/tests/side_integral/side_integral_3d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 1
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.2
  elem_type = HEX8
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./square_cut_uo]
    type = RectangleCutUserObject
    cut_data = ' -1.0 -0.1 -1.0
                  2.0  1.1 -1.0
                  2.0  1.1  1.0
                 -1.0 -0.1  1.0'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./front]
    type = DirichletBC
    variable = u
    boundary = front
    value = 3
  [../]

  [./back]
    type = DirichletBC
    variable = u
    boundary = back
    value = 2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Postprocessors]
  [./front]
    type = SideIntegralVariablePostprocessor
    variable = u
    boundary = front
  [../]
  [./back]
    type = SideIntegralVariablePostprocessor
    variable = u
    boundary = back
  [../]
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/flux_limited_TVD_pflow/pffltvd_2D_angle.i

# Using flux-limited TVD advection ala Kuzmin and Turek, mploying PorousFlow Kernels and UserObjects, with superbee flux-limiter
# 2D version with velocity = (0.1, 0.2, 0)
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  xmin = 0
  xmax = 1
  ny = 10
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '1 - x - 2 * y'
  [../]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1 | x > 0.3 | y < 0.1 | y > 0.3, 0, 1)'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = tracer
  [../]
  [./flux0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = advective_flux_calculator_0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = porepressure
  [../]
  [./flux1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = porepressure
    advective_flux_calculator = advective_flux_calculator_1
  [../]
[]

[BCs]
  [./constant_boundary_porepressure]
    type = FunctionDirichletBC
    variable = porepressure
    function = '1 - x - 2 * y'
    boundary = 'left right top bottom'
  [../]
  [./no_tracer_at_boundary]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = 'left right top bottom'
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      thermal_expansion = 0
      viscosity = 1.0
      density0 = 1000.0
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure tracer'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
  [./advective_flux_calculator_0]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 0
  [../]
  [./advective_flux_calculator_1]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = tracer
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = the_simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-2 0 0   0 1E-2 0   0 0 1E-2'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 0.3
  dt = 0.1
[]

[Outputs]
  [./out]
    type = Exodus
    execute_on = 'initial final'
  [../]
[]

test/tests/controls/time_periods/dirackernels/dirac.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  uniform_refine = 2
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.5
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[DiracKernels]
  [./point_source]
    type = ConstantPointSource
    variable = u
    value = 1
    point = '0.25 0.25'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Controls]
  [./point_source]
    type = TimePeriod
    disable_objects = 'DiracKernel::point_source'
    start_time = '0.15'
    end_time = '0.35'
    execute_on = 'initial timestep_begin'
  [../]
[]

modules/combined/test/tests/simple_contact/simple_contact_rz_test.i

#
# The analytic solution is:
#   disp_x = -7e-5 * x
#   disp_y =  6e-5 * y
#   stress_xx = stress_zz = -100
#   stress_yy = stress_xy = 0
#
# Note: Run merged_rz.i to generate a solution to compare to that doesn't use contact.

[Mesh]
  file = contact_rz.e
  # PETSc < 3.5.0 requires the iteration patch_update_strategy to
  # avoid PenetrationLocator warnings, which are currently treated as
  # errors by the TestHarness.
  patch_update_strategy = 'iteration'
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 1'
    scale_factor = 100
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = FINITE
    generate_output = 'stress_xx stress_xy stress_zx stress_yy stress_zz stress_yz'
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e5
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 10
    value = 0.0
  [../]

  [./Pressure]
    [./right_pressure]
      boundary = 4
      function = pressure
    [../]
  [../]
[]

[Materials]
  [./stiffStuff]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type '
  petsc_options_value = 'lu       '

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-9

  l_max_its = 20
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_4/ring4_mu_0_2_pen_sm.i

[Mesh]
  file = ring4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = ring4_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = ring4_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/porous_flow/test/tests/gravity/grav02c.i

# Checking that gravity head is established in the transient situation when 0<=saturation<=1 (note the less-than-or-equal-to).
# 2phase (PP), 2components, vanGenuchten, constant fluid bulk-moduli for each phase, constant viscosity, constant permeability, Corey relative perm
# For better agreement with the analytical solution (ana_pp), just increase nx

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = -1
  xmax = 0
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-3 1E-2 1E-1'
    x = '1E-3 1E-2 1E-1'
  [../]
[]

[Variables]
  [./ppwater]
    initial_condition = -0.1
  [../]
  [./ppgas]
    initial_condition = 0
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
    gravity = '-1 0 0'
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = ppgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = ppgas
    gravity = '-1 0 0'
  [../]
[]

[Functions]
  [./ana_ppwater]
    type = ParsedFunction
    vars = 'g B p0 rho0'
    vals = '1 2 pp_water_top 1'
    value = '-B*log(exp(-p0/B)+g*rho0*x/B)' # expected pp at base
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2
      density0 = 1
      viscosity = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.1
      viscosity = 0.5
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0  0 2 0  0 0 3'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 1
  [../]
[]

[Postprocessors]
  [./pp_water_top]
    type = PointValue
    variable = ppwater
    point = '0 0 0'
  [../]
  [./pp_water_base]
    type = PointValue
    variable = ppwater
    point = '-1 0 0'
  [../]
  [./pp_water_analytical]
    type = FunctionValuePostprocessor
    function = ana_ppwater
    point = '-1 0 0'
  [../]
  [./mass_ph0]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./mass_ph1]
    type = PorousFlowFluidMass
    fluid_component = 1
    execute_on = 'initial timestep_end'
  [../]

[]

[Preconditioning]
  active = andy
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000 test'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
  end_time = 1.0
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = grav02c
  [./csv]
    type = CSV
  [../]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto23.i

# MeanCapTC with compressive failure

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 10
    value_residual = 1
    internal_limit = 10
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = -10
    value_residual = -1
    internal_limit = 9
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-11
    internal_constraint_tolerance = 1E-9
    use_custom_cto = true
    use_custom_returnMap = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7 1'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-6 5 4  5 -7 2  4 2 -2'
    eigenstrain_name = ini_stress
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-11
    plastic_models = cap
    tangent_operator = nonlinear
    min_stepsize = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/controls/error/non_controllable_error.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

[Controls]
  [./test_control]
    type = TestControl
    test_type = 'real'
    parameter = 'Kernels/diff/non_controllable'
    execute_on = 'initial'
  [../]
[]

modules/combined/test/tests/j2_plasticity_vs_LSH/j2_hard1_mod_small_strain.i

# Test designed to compare results and active time between SH/LinearStrainHardening
# material vs TM j2 plastic user object. As number of elements increases, TM
# active time increases at a much higher rate than SM. Testing at 4x4x4
# (64 elements).
#
# plot vm_stress vs intnl to see constant hardening
#
# Original test located at:
# tensor_mechanics/tests/j2_plasticity/hard1.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 4
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vm_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eq_pl_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./intnl]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = intnl
  [../]
  [./eq_pl_strain]
    type = RankTwoScalarAux
    rank_two_tensor = plastic_strain
    scalar_type = EffectiveStrain
    variable = eq_pl_strain
  [../]
  [./vm_stress]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = VonMisesStress
    variable = vm_stress
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 't/60'
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 2.4e2
  [../]
  [./j2]
    type = TensorMechanicsPlasticJ2
    yield_strength = str
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    #with E = 2.1e5 and nu = 0.3
    #Hooke's law: E-nu to Lambda-G
    C_ijkl = '121154 80769.2'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = j2
    tangent_operator = elastic
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-10
  l_tol = 1e-4
  start_time = 0.0
  end_time = 0.5
  dt = 0.01
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./intnl]
    type = ElementAverageValue
    variable = intnl
  [../]
  [./eq_pl_strain]
    type = PointValue
    point = '0 0 0'
    variable = eq_pl_strain
  [../]
  [./vm_stress]
    type = PointValue
    point = '0 0 0'
    variable = vm_stress
  [../]
[]

[Outputs]
  csv = true
  print_linear_residuals = false
  perf_graph = true
[]

test/tests/multiapps/multilevel/dt_from_master_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.25

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  [./out]
    type = Console
    output_file = true
  [../]
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0 0.5 0.5 0'
    input_files = dt_from_master_sub.i
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_1/brick1_mu_0_2_pen_sm.i

[Mesh]
  file = brick1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
  [./tang_force_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_x
  [../]
  [./disp_x13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_y
  [../]
  [./disp_y13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  file_base = brick1_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = brick1_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x5 disp_x8 disp_x13 disp_x16 disp_y5 disp_y8 disp_y13 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/elastic_thermal_patch/elastic_thermal_patch_rz_smp.i

#
# This problem is modified from the Abaqus verification manual:
#   "1.5.4 Patch test for axisymmetric elements"
# The original stress solution is given as:
#   xx = yy = zz = 2000
#   xy = 400
#
# Here, E=1e6 and nu=0.25.
# However, with a +100 degree change in temperature and a coefficient
#   of thermal expansion of 1e-6, the solution becomes:
#   xx = yy = zz = 1800
#   xy = 400
#   since
#   E*(1-nu)/(1+nu)/(1-2*nu)*(1+2*nu/(1-nu))*(1e-3-1e-4) = 1800
#
# Also,
#
#   dSrr   dSrz   Srr-Stt
#   ---- + ---- + ------- + br = 0
#    dr     dz       r
#
# and
#
#   dSrz   Srz   dSzz
#   ---- + --- + ---- + bz = 0
#    dr     r     dz
#
# where
#   Srr = stress in rr
#   Szz = stress in zz
#   Stt = stress in theta-theta
#   Srz = stress in rz
#   br  = body force in r direction
#   bz  = body force in z direction
#
# This test is meant to exercise the Jacobian.  To that end, the body
# force has been turned off.  This makes the results differ slightly
# from the original values, but requires a correct Jacobian for minimal
# iterations.  Iteration plotting is turned on to ensure that the
# number of iterations needed does not increase.

[GlobalParams]
  temperature = temp
  volumetric_locking_correction = true
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_thermal_patch_rz_test.e
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '1e-3*x'
  [../]
  [./uz]
    type = ParsedFunction
    value = '1e-3*(x+y)'
  [../]
  [./body]
    type = ParsedFunction
    value = '-400/x'
  [../]
  [./temp]
    type = ParsedFunction
    value = '117.56+100*t'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules]
    [TensorMechanics]
        [Master]
            displacements = 'disp_x disp_y'
            [All]
                displacements = 'disp_x disp_y'
                add_variables = true
                strain = SMALL
                incremental = true
                eigenstrain_names = eigenstrain
                generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
            [../]
        [../]
    [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = ur
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = uz
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = 10
    function = temp
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 666666.6666666667
    poissons_ratio = 0.25
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-6
    stress_free_temperature = 117.56
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]

  [./heat]
    type = HeatConductionMaterial
    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    block = 1
    density = 0.283
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-11
  nl_rel_tol = 1e-12

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[]

[Outputs]
  file_base = elastic_thermal_patch_rz_smp_out
  [./exodus]
    type = Exodus
    execute_on = 'initial timestep_end nonlinear'
    nonlinear_residual_dt_divisor = 100
  [../]
[]

test/tests/vectorpostprocessors/element_variables_difference_max/element_variables_difference_max.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 10
  nz = 10
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./forcing_v]
    type = ParsedFunction
    value = 'x * y * z'
  [../]
[]

[Kernels]
  [./diffusion_u]
    type = Diffusion
    variable = u
  [../]
  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diffusion_v]
    type = Diffusion
    variable = v
  [../]
  [./forcing_v]
    type = BodyForce
    variable = v
    function = forcing_v
  [../]
  [./time_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = 'u'
    boundary = 'bottom'
    value = 1
  [../]

  [./top]
    type = DirichletBC
    variable = 'u'
    boundary = 'top'
    value = 0
  [../]
[]

[VectorPostprocessors]
  [./difference]
    type = ElementVariablesDifferenceMax
    compare_a = u
    compare_b = v
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 1
  solve_type = PJFNK
[]

[Outputs]
  execute_on = 'initial timestep_end'
  csv = true
[]

test/tests/userobjects/layered_average/layered_average_block.i

#
# The mesh consists of two blocks.  Block 1 is from y=0 to y=2, and
# block 2 is from y=3 to y=4.  Elements are 0.25 high.  The solution
# is u = 4y.
#
# Two sets of LayeredAverage values are computed.  In both cases, four
# layers are used.  In 'unrestricted', the layers span the entire mesh.
# In 'restricted', the layers cover only block 1.
#
# For 'unrestricted', the result is a value of 2 from 0<y<1 , a value
# of 6 from 1<y<2, and a value of 14 from 3<y<4.
#
# For 'restricted', the result is a value of 1 from 0<y<0.5, a value of
# 3 from 0.5<y<1, a value of 5 from 1<y<1.5, and a value of 7 for y>1.5.
#

[Mesh]
  file = layered_average_block.e
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./restricted]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./unrestricted]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./restricted]
    type = SpatialUserObjectAux
    variable = restricted
    execute_on = timestep_end
    user_object = restricted
  [../]
  [./unrestricted]
    type = SpatialUserObjectAux
    variable = unrestricted
    execute_on = timestep_end
    user_object = unrestricted
  [../]
[]

[BCs]
  [./ll]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
  [./lu]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 8
  [../]
  [./ul]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 12
  [../]
  [./uu]
    type = DirichletBC
    variable = u
    boundary = 4
    value = 16
  [../]
[]

[UserObjects]
  [./restricted]
    type = LayeredAverage
    direction = y
    num_layers = 4
    variable = u
    execute_on = linear
    block = 1
  [../]
  [./unrestricted]
    type = LayeredAverage
    direction = y
    num_layers = 4
    variable = u
    execute_on = linear
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = true
[]

modules/misc/test/tests/dynamic_loading/dynamic_obj_registration/dynamic_objects.i

# This input file contains objects only available in phase_field
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 2
  xmax = 50
  ymax = 25
  elem_type = QUAD4
  uniform_refine = 2
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c_IC]
    type = BoundingBoxIC
    x1 = 15.0
    x2 = 35.0
    y1 = 0.0
    y2 = 25.0
    inside = 1.0
    outside = -0.8
    variable = c
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
    block = 0
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 15
  nl_max_its = 10
  start_time = 0.0

  num_steps = 2
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

[Problem]
  register_objects_from = 'PhaseFieldApp'
  library_path = '../../../../../phase_field/lib'
[]

modules/richards/test/tests/dirac/bh09.i

# fully-saturated
# production
# with anisotropic permeability
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = 1
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E7
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '2E-12 1E-12 0  1E-12 2E-12 0  0 0 1E-12'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON

[]

[Outputs]
  file_base = bh09
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/tensor_mechanics/test/tests/initial_stress/gravity_with_aux.i

# Apply an initial stress, using AuxVariables, that should be
# exactly that caused by gravity, and then
# do a transient step to check that nothing
# happens

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -10
  zmax = 0
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./weight]
    type = BodyForce
    variable = disp_z
    value = -0.5 # this is density*gravity
  [../]
[]


[BCs]
  # back = zmin
  # front = zmax
  # bottom = ymin
  # top = ymax
  # left = xmin
  # right = xmax
  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left right'
    value = 0
  [../]
  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom top'
    value = 0
  [../]
  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 'back'
    value = 0
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./aux_equals_1]
    initial_condition = 1
  [../]
  [./aux_equals_2]
    initial_condition = 2
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]


[Functions]
  [./half_weight]
    type = ParsedFunction
    value = '0.25*z' # half of the initial stress that should result from the weight force
  [../]
  [./kxx]
    type = ParsedFunction
    value = '0.4*z' # some arbitrary xx and yy stress that should not affect the result
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./strain_from_initial_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = 'kxx 0 0  0 kxx 0  0 0 half_weight'
    initial_stress_aux = 'aux_equals_1 aux_equals_1 aux_equals_1  aux_equals_1 aux_equals_1 aux_equals_1  aux_equals_1 aux_equals_1 aux_equals_2'
    eigenstrain_name = ini_stress
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]


[Executioner]
  end_time = 1.0
  dt = 1.0
  solve_type = NEWTON
  type = Transient

  nl_abs_tol = 1E-8
  nl_rel_tol = 1E-12
  l_tol = 1E-3
  l_max_its = 200
  nl_max_its = 400

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]



[Outputs]
  file_base = gravity_with_aux
  exodus = true
[]

test/tests/transfers/transfer_interpolation/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  # This test currently diffs when run in parallel with DistributedMesh enabled,
  # most likely due to the fact that it uses some geometric search stuff.
  # For more information, see #2121.
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[UserObjects]
  [./layered_average]
    type = LayeredAverage
    variable = u
    direction = x
    num_layers = 3
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  nl_rel_tol = 1e-10

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]
[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub.i
    sub_cycling = true
    interpolate_transfers = true
    output_sub_cycles = true
  [../]
[]

[Transfers]
  [./nearest_node]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = nearest_node
  [../]
  [./mesh_function]
    type = MultiAppMeshFunctionTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = mesh_function
  [../]
  [./user_object]
    type = MultiAppUserObjectTransfer
    direction = to_multiapp
    multi_app = sub
    variable = user_object
    user_object = layered_average
  [../]
  [./interpolation]
    type = MultiAppInterpolationTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = interpolation
  [../]
[]

modules/richards/test/tests/rogers_stallybrass_clements/rsc_fu_02.i

# RSC test with low-res time and spatial resolution
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 200
  ny = 1
  xmin = 0
  xmax = 10 # x is the depth variable, called zeta in RSC
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityOil'
  relperm_UO = 'RelPerm RelPerm'
  SUPG_UO = 'SUPGstandard SUPGstandard'
  sat_UO = 'Saturation Saturation'
  seff_UO = 'SeffWater SeffOil'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '3E-2 5E-1 8E-1'
    x = '0 1 5'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater poil'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 10
    bulk_mod = 2E9
  [../]
  [./DensityOil]
    type = RichardsDensityConstBulk
    dens0 = 20
    bulk_mod = 2E9
  [../]
  [./SeffWater]
    type = RichardsSeff2waterRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
  [./SeffOil]
    type = RichardsSeff2gasRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
  [./RelPerm]
    type = RichardsRelPermMonomial
    simm = 0
    n = 1
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E-2
  [../]
[]


[Variables]
  [./pwater]
  [../]
  [./poil]
  [../]
[]

[ICs]
  [./water_init]
    type = ConstantIC
    variable = pwater
    value = 0
  [../]
  [./oil_init]
    type = ConstantIC
    variable = poil
    value = 15
  [../]
[]

[Kernels]
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstoil]
    type = RichardsMassChange
    variable = poil
  [../]
  [./richardsfoil]
    type = RichardsFullyUpwindFlux
    variable = poil
  [../]
[]


[AuxVariables]
  [./SWater]
  [../]
  [./SOil]
  [../]
[]


[AuxKernels]
  [./Seff1VGwater_AuxK]
    type = RichardsSeffAux
    variable = SWater
    seff_UO = SeffWater
    pressure_vars = 'pwater poil'
  [../]
  [./Seff1VGoil_AuxK]
    type = RichardsSeffAux
    variable = SOil
    seff_UO = SeffOil
    pressure_vars = 'pwater poil'
  [../]
[]


[BCs]
# we are pumping water into a system that has virtually incompressible fluids, hence the pressures rise enormously.  this adversely affects convergence because of almost-overflows and precision-loss problems.  The fixed things help keep pressures low and so prevent these awful behaviours.   the movement of the saturation front is the same regardless of the fixed things.
  active = 'recharge fixedoil fixedwater'
  [./recharge]
    type = RichardsPiecewiseLinearSink
    variable = pwater
    boundary = 'left'
    pressures = '-1E10 1E10'
    bare_fluxes = '-1 -1'
    use_mobility = false
    use_relperm = false
  [../]
  [./fixedwater]
    type = DirichletBC
    variable = pwater
    boundary = 'right'
    value = 0
  [../]
  [./fixedoil]
    type = DirichletBC
    variable = poil
    boundary = 'right'
    value = 15
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.25
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 2E-3'
    gravity = '0E-0 0 0'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]


[Outputs]
  file_base = rsc_fu_02
  interval = 100000
  execute_on = 'initial timestep_end final'
  exodus = true
[]

test/tests/transfers/multiapp_conservative_transfer/master_userobject.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 20
  ny = 20
  nz = 20
  # The MultiAppUserObjectTransfer object only works with ReplicatedMesh
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./multi_layered_average]
  [../]
  [./element_multi_layered_average]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.001 # This will be constrained by the multiapp

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  l_tol = 1e-8
  nl_rel_tol = 1e-10
[]


[Outputs]
  exodus = true
  csv = true
[]

[VectorPostprocessors]
  [to_nearest_point]
    type = NearestPointIntegralVariablePostprocessor
    variable = multi_layered_average
    points = '0.3 0.1 0.3 0.7 0.1 0.3'
    execute_on = 'transfer nonlinear TIMESTEP_END'
  []

  [to_nearest_point_element]
    type = NearestPointIntegralVariablePostprocessor
    variable = element_multi_layered_average
    points = '0.3 0.1 0.3 0.7 0.1 0.3'
    execute_on = 'transfer nonlinear TIMESTEP_END'
  []
[]

[MultiApps]
  [./sub_app]
    positions = '0.3 0.1 0.3 0.7 0.1 0.3'
    type = TransientMultiApp
    input_files = sub_userobject.i
    app_type = MooseTestApp
  [../]
[]

[Transfers]
  [./layered_transfer]
    direction = from_multiapp
    user_object = layered_average
    variable = multi_layered_average
    type = MultiAppUserObjectTransfer
    multi_app = sub_app

    from_postprocessors_to_be_preserved  = 'from_postprocessor'
    to_postprocessors_to_be_preserved  = 'to_nearest_point'
  [../]
  [./element_layered_transfer]
    direction = from_multiapp
    user_object = layered_average
    variable = element_multi_layered_average
    type = MultiAppUserObjectTransfer
    multi_app = sub_app

    from_postprocessors_to_be_preserved  = 'from_postprocessor'
    to_postprocessors_to_be_preserved  = 'to_nearest_point_element'
  [../]
[]

modules/porous_flow/test/tests/jacobian/eff_stress01.i

# 2phase (PP)
# vanGenuchten, constant-bulk density for each phase, constant porosity, 2components (that exist in both phases)
# unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]


[Kernels]
  [./grad0]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 0
    variable = ppwater
  [../]
  [./grad1]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 1
    variable = ppgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Materials]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/geomsearch/3d_moving_penetration/pl_test1q.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test1q.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_abs_tol = 1e-7
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test1q_out
  exodus = true
[]

modules/richards/test/tests/buckley_leverett/bl01_lumped.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 150
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2.0E6
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-4
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]

[AuxKernels]
  active = 'calculate_seff'
  [./calculate_seff]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[BCs]
  active = 'left'
  [./left]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 980000
  [../]
[]

[Kernels]
  active = 'richardsf richardst'

  [./richardst]
    type = RichardsLumpedMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[Functions]
 active = 'initial_pressure'
  [./initial_pressure]
    type = ParsedFunction
    value = max((1000000-x/5*1000000)-20000,-20000)
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 20'
  [../]

[]

[Executioner]
  type = Transient
  end_time = 50
  dt = 2
[]

[Outputs]
  file_base = bl01_lumped
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

test/tests/postprocessors/real_parameter_reporter/real_parameter_reporter.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

[Postprocessors]
  [./coef_value]
    type = RealControlParameterReporter
    parameter = 'Kernels/diff/coef'
    execute_on = 'initial timestep_begin'
  [../]
[]

modules/combined/test/tests/fieldsplit_contact/2blocks3d_sm.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = 2blocks3d.e
  patch_size = 5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
[]

[Functions]
  [./horizontal_movement]
    type = ParsedFunction
    value = t/10.0
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 2
    paired_boundary = 3
  [../]
[]

[BCs]
  [./push_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = horizontal_movement
  [../]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 4'
    value = 0.0
  [../]
  [./fix_z]
    type = DirichletBC
    variable = disp_z
    boundary = '1 4'
    value = 0.0
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    block = 1
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    formulation = Nonlinear3D
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
  [./right]
    type = Elastic
    block = 2
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    formulation = Nonlinear3D
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Contact]
  [./leftright]
    slave = 2
    master = 3
    model = frictionless
    penalty = 1e+6
    normalize_penalty = true
    formulation = kinematic
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

[Preconditioning]
  active = 'FSP'

  [./FSP]
    type = FSP
    # It is the starting point of splitting
    topsplit = 'contact_interior' # 'contact_interior' should match the following block name
    [./contact_interior]
      splitting          = 'contact interior'
      splitting_type     = multiplicative
    [../]
    [./interior]
      type = ContactSplit
      vars = 'disp_x disp_y disp_z'
      uncontact_master   = '3'
      uncontact_slave    = '2'
      uncontact_displaced = '1'
      blocks              = '1 2'
      include_all_contact_nodes = 1
      petsc_options_iname = '-ksp_type -ksp_max_it -ksp_rtol -ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter -pc_hypre_strong_threshold'
      petsc_options_value = ' preonly 10 1e-4 201                hypre    boomeramg      1                            0.25'
    [../]
    [./contact]
      type = ContactSplit
      vars = 'disp_x disp_y disp_z'
      contact_master   = '3'
      contact_slave    = '2'
      contact_displaced = '1'
      include_all_contact_nodes = 1
      petsc_options_iname = '-ksp_type -ksp_max_it -pc_type -pc_asm_overlap -sub_pc_type   -pc_factor_levels'
      petsc_options_value = '  preonly 10 asm  1 lu 0'
    [../]
  [../]
[]

[Problem]
  error_on_jacobian_nonzero_reallocation = true
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  dt = 0.1
  dtmin = 0.1
  end_time = 0.1

  l_tol = 1e-4
  l_max_its = 100

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  nl_max_its = 100
[]

[Outputs]
  file_base = 2blocks3d_out
  [./exodus]
    type = Exodus
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

modules/heat_conduction/test/tests/heat_conduction/min_gap/min_gap.i

[Mesh]
  type = MeshGeneratorMesh
  displacements = 'disp_x disp_y'
  [./left_gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    ny = 3
    xmin = -3
    xmax = 0
    ymin = -5
    ymax = 5
  [../]
  [./right_gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    ny = 3
    xmin = 3
    xmax = 6
    ymin = -5
    ymax = 5
  [../]

  [./left_and_right]
    type = MeshCollectionGenerator
    inputs = 'left_gen right_gen'
  [../]
  [./leftleft]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = leftleft
    normal = '-1 0 0'
    input = left_and_right
  [../]
  [./leftright]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = leftright
    normal = '1 0 0'
    input = leftleft
  [../]

  [./right]
    type = SubdomainBoundingBoxGenerator
    top_right = '6 5 0'
    bottom_left = '3 -5 0'
    block_id = 1
    input = leftright
  [../]

  [./rightleft]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = rightleft
    normal = '-1 0 0'
    input = right
  [../]
  [./rightright]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = rightright
    normal = '1 0 0'
    input = rightleft
  [../]
[]

[Variables]
  [./temp]
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./gap_conductance]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./disp_x]
    type = ParsedFunction
    value = -3+t
  [../]
  [./left_temp]
    type = ParsedFunction
    value = 1000+t
  [../]
[]

[Kernels]
  [./hc]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = FunctionAux
    block = 1
    variable = disp_x
    function = disp_x
    execute_on = 'INITIAL TIMESTEP_END'
  [../]
  [./gap_conductivity]
    type = MaterialRealAux
    boundary = leftright
    property = gap_conductance
    variable = gap_conductance
    execute_on = 'INITIAL TIMESTEP_END'
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = temp
    boundary = leftleft
    function = left_temp
  [../]
  [./right]
    type = DirichletBC
    variable = temp
    boundary = rightright
    value = 400
  [../]
[]

[ThermalContact]
  [./left_to_right]
    slave = leftright
    quadrature = true
    master = rightleft
    variable = temp
    min_gap = 1
    min_gap_order = 1
    type = GapHeatTransfer
  [../]
[]

[Materials]
  [./hcm]
    type = HeatConductionMaterial
    block = '0 1'
    specific_heat = 1
    thermal_conductivity = 1
    use_displaced_mesh = true
  [../]
[]

[Postprocessors]
  [./gap_conductance]
    type = PointValue
    point = '0 0 0'
    variable = gap_conductance
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.25
  end_time = 3.0
  solve_type = 'PJFNK'
[]

[Outputs]
  csv = true
  execute_on = 'TIMESTEP_END'
[]

modules/combined/test/tests/inelastic_strain/elas_plas/elas_plas_nl1_sm.i

#
# Test for effective strain calculation.
# Boundary conditions from NAFEMS test NL1
#
# This is not a verification test. The boundary conditions are applied such
# that the first step generates only elastic stresses. The second and third
# steps generate plastic deformation and the effective strain should be
# increasing throughout the run.
#
[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
[]

[Mesh]#Comment
  file = one_elem2.e
  displacements = 'disp_x disp_y'
[] # Mesh

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[] # Variables

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eff_plastic_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[] # AuxVariables

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./pressure]
    type = MaterialTensorAux
    tensor = stress
    variable = pressure
    quantity = hydrostatic
    execute_on = timestep_end
  [../]
  [./elastic_strain_xx]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_xx
    index = 0
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]
  [./elastic_strain_zz]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_zz
    index = 2
  [../]
  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]
  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]
  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]
  [./tot_strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = tot_strain_xx
    index = 0
  [../]
  [./tot_strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = tot_strain_yy
    index = 1
  [../]
  [./tot_strain_zz]
    type = MaterialTensorAux
    tensor = total_strain
    variable = tot_strain_zz
    index = 2
  [../]
  [./eff_plastic_strain]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = eff_plastic_strain
  [../]
[] # AuxKernels

[Functions]
  [./appl_dispy]
    type = PiecewiseLinear
    x = '0     1.0     2.0     3.0'
    y = '0.0 0.208e-4 0.50e-4 1.00e-4'
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 101
    value = 0.0
  [../]
  [./origin_x]
    type = DirichletBC
    variable = disp_x
    boundary = 103
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 102
    value = 0.0
  [../]
  [./origin_y]
    type = DirichletBC
    variable = disp_y
    boundary = 103
    value = 0.0
  [../]
  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = appl_dispy
  [../]
[] # BCs

[Materials]
  [./stiffStuff1]
    type = SolidModel
    block = 1
    youngs_modulus = 250e9
    poissons_ratio = 0.25
    constitutive_model = isoplas
    formulation = NonlinearPlaneStrain
  [../]
  [./isoplas]
    type = IsotropicPlasticity
    block = 1
    yield_stress = 5e6
    hardening_constant = 0.0
  [../]
[] # Materials

[Executioner]
  type = Transient
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 20

  dt = 1.0
  start_time = 0.0
  num_steps = 100
  end_time = 3.0
[] # Executioner

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./stress_xy]
    type = ElementAverageValue
    variable = stress_xy
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./pressure]
    type = ElementAverageValue
    variable = pressure
  [../]
  [./el_strain_xx]
    type = ElementAverageValue
    variable = elastic_strain_xx
  [../]
  [./el_strain_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./el_strain_zz]
    type = ElementAverageValue
    variable = elastic_strain_zz
  [../]
  [./pl_strain_xx]
    type = ElementAverageValue
    variable = plastic_strain_xx
  [../]
  [./pl_strain_yy]
    type = ElementAverageValue
    variable = plastic_strain_yy
  [../]
  [./pl_strain_zz]
    type = ElementAverageValue
    variable = plastic_strain_zz
  [../]
  [./eff_plastic_strain]
    type = ElementAverageValue
    variable = eff_plastic_strain
  [../]
  [./tot_strain_xx]
    type = ElementAverageValue
    variable = tot_strain_xx
  [../]
  [./tot_strain_yy]
    type = ElementAverageValue
    variable = tot_strain_yy
  [../]
  [./tot_strain_zz]
    type = ElementAverageValue
    variable = tot_strain_zz
  [../]
  [./disp_x1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_x
  [../]
  [./disp_x4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_x
  [../]
  [./disp_y1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  file_base=elas_plas_nl1_out
  [./console]
    type = Console
    output_linear = true
  [../]
[] # Outputs

modules/xfem/test/tests/diffusion_xfem/levelsetcut2d_aux.i

# 2D: Mesh is cut by level set based cutter
# The level set is a MOOSE auxvariable

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '3   5'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = 'x-0.5'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 3
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/functions/piecewise_multilinear/except2.i

# PiecewiseMultilinear function exception test
# Grid is not monotonic

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 2
  nx = 1
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./f]
  [../]
[]

[AuxKernels]
  [./f_auxK]
    type = FunctionAux
    variable = f
    function = except1_fcn
  [../]
[]


[Functions]
  [./except1_fcn]
    type = PiecewiseMultilinear
    data_file = except2.txt
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  hide = dummy
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_2phasePS_KT.i

# Pressure pulse in 1D with 2 phases, 2components - transient
# Using KT stabilization

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./ppwater]
    initial_condition = 2e6
  [../]
  [./sgas]
    initial_condition = 0.3
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
  [./ppgas]
    family = MONOMIAL
    order = FIRST
  [../]
[]

[Kernels]
  [./mass_component0]
    type = PorousFlowMassTimeDerivative
    variable = ppwater
    fluid_component = 0
  [../]
  [./flux_component0_phase0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = ppwater
    advective_flux_calculator = afc_component0_phase0
  [../]
  [./flux_component0_phase1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = ppwater
    advective_flux_calculator = afc_component0_phase1
  [../]
  [./mass_component1]
    type = PorousFlowMassTimeDerivative
    variable = sgas
    fluid_component = 1
  [../]
  [./flux_component1_phase0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = sgas
    advective_flux_calculator = afc_component1_phase0
  [../]
  [./flux_component1_phase1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = sgas
    advective_flux_calculator = afc_component1_phase1
  [../]
[]

[AuxKernels]
  [./ppgas]
    type = PorousFlowPropertyAux
    property = pressure
    phase = 1
    variable = ppgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 1e5
  [../]
  [./afc_component0_phase0]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    fluid_component = 0
    phase = 0
    flux_limiter_type = superbee
  [../]
  [./afc_component0_phase1]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    fluid_component = 0
    phase = 1
    flux_limiter_type = superbee
  [../]
  [./afc_component1_phase0]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    fluid_component = 1
    phase = 0
    flux_limiter_type = superbee
  [../]
  [./afc_component1_phase1]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    fluid_component = 1
    phase = 1
    flux_limiter_type = superbee
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 2e7
      density0 = 1
      thermal_expansion = 0
      viscosity = 1e-5
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-15 0 0 0 1e-15 0 0 0 1e-15'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 1
  [../]
[]

[BCs]
  [./leftwater]
    type = DirichletBC
    boundary = left
    value = 3e6
    variable = ppwater
  [../]
  [./rightwater]
    type = DirichletBC
    boundary = right
    value = 2e6
    variable = ppwater
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-20 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1e3
  end_time = 1e4
[]

[VectorPostprocessors]
  [./pp]
    type = LineValueSampler
    sort_by = x
    variable = 'ppwater ppgas'
    start_point = '0 0 0'
    end_point = '100 0 0'
    num_points = 11
  [../]
[]

[Outputs]
  file_base = pressure_pulse_1d_2phasePS_KT
  print_linear_residuals = false
  [./csv]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/outputs/recover/recover2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  file_base = recover_out
  exodus = true
[]

modules/combined/test/tests/multiphase_mechanics/nonsplit_gradderiv.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 5
  xmax = 10
  ymax = 10
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  displacement_gradients = 'gxx gxy gyx gyy'
[]

[AuxVariables]
  [./disp_x]
    [./InitialCondition]
      type = FunctionIC
      function = '0.1*sin(2*x/10*3.14159265359)'
    [../]
  [../]
  [./disp_y]
    [./InitialCondition]
      type = FunctionIC
      function = '0.1*sin(1*y/10*3.14159265359)'
    [../]
  [../]
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
    initial_condition = 0
  [../]

  [./gxx]
  [../]
  [./gxy]
  [../]
  [./gyx]
  [../]
  [./gyy]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = c
  [../]
  [./bulk]
    type = CahnHilliard
    variable = c
    mob_name = M
    f_name = F
  [../]
  [./int]
    type = CHInterface
    variable = c
    mob_name = M
    kappa_name = kappa_c
  [../]

  [./gxx]
    type = GradientComponent
    variable = gxx
    v = disp_x
    component = 0
  [../]
  [./gxy]
    type = GradientComponent
    variable = gxy
    v = disp_x
    component = 1
  [../]
  [./gyx]
    type = GradientComponent
    variable = gyx
    v = disp_y
    component = 0
  [../]
  [./gyy]
    type = GradientComponent
    variable = gyy
    v = disp_y
    component = 1
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'M  kappa_c'
    prop_values = '1  0.1'
  [../]
  [./straingradderiv]
    type = StrainGradDispDerivatives
  [../]

  [./elasticity_tensor]
    type = ComputeConcentrationDependentElasticityTensor
    c = c
    C0_ijkl = '1.0 1.0'
    C1_ijkl = '3.0 3.0'
    fill_method0 = symmetric_isotropic
    fill_method1 = symmetric_isotropic
  [../]
  [./smallstrain]
    type = ComputeSmallStrain
  [../]
  [./linearelastic_a]
    type = ComputeLinearElasticStress
  [../]
  [./elastic_free_energy]
    type = ElasticEnergyMaterial
    f_name = F
    args = 'c'
    derivative_order = 3
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = NEWTON

  l_max_its = 30
  l_tol = 1.0e-6

  nl_max_its = 15
  nl_rel_tol = 1.0e-7
  nl_abs_tol = 1.0e-10

  num_steps = 2
  dt = 1
[]

[Outputs]
  perf_graph = true
  exodus = true
[]

test/tests/multiapps/picard_multilevel/fullsolve_multilevel/sub_level1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
[]

[Variables]
  [v]
  []
[]

[AuxVariables]
  [u]
  []
  [w]
  []
[]

[Kernels]
  [time_derivative]
    type = TimeDerivative
    variable = v
  []
  [diffusion]
    type = Diffusion
    variable = v
  []
  [source]
    type = CoupledForce
    variable = v
    v = u
  []
[]

[BCs]
  [dirichlet0]
    type = DirichletBC
    variable = v
    boundary = '0'
    value = 0
  []
  [dirichlet]
    type = DirichletBC
    variable = v
    boundary = '2'
    value = 100
  []
[]

[Postprocessors]
  [avg_u]
    type = ElementAverageValue
    variable = u
    execute_on = 'initial linear'
  []
  [avg_v]
    type = ElementAverageValue
    variable = v
    execute_on = 'initial linear'
  []
  [avg_w]
    type = ElementAverageValue
    variable = w
    execute_on = 'initial linear'
  []
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart '
  petsc_options_value = 'hypre boomeramg 100'

  end_time = 0.1
  dt = 0.02
  # picard_max_its = 5
  # accept_on_max_picard_iteration = true
  # nl_rel_tol = 1e-8
  # nl_abs_tol = 1e-9
  # picard_rel_tol = 1e-3
  # picard_abs_tol = 1e-7
[]


[MultiApps]
  [level2-]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = sub_level2.i
    execute_on = 'timestep_end'
    # sub_cycling = true
  []
[]

[Transfers]
  [v_to_sub]
    type = MultiAppMeshFunctionTransfer
    direction = to_multiapp
    source_variable = v
    variable = v
    multi_app = level2-
    execute_on = 'timestep_end'
  []
  [w_from_sub]
    type = MultiAppMeshFunctionTransfer
    direction = from_multiapp
    source_variable = w
    variable = w
    multi_app = level2-
    execute_on = 'timestep_end'
  []
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
  # print_linear_residuals = false
[]

modules/tensor_mechanics/test/tests/critical_time_step/crit_time_solid_uniform.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 10
  nz = 15

  xmin = 0
  xmax = 2

  ymin = 0
  ymax = 2

  zmin = 0
  zmax = 1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.1
    youngs_modulus = 1e6
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./density]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '8050.0'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-4

  l_max_its = 3

  start_time = 0.0
  dt = 0.1
  num_steps = 1
  end_time = 1.0
[]

[Postprocessors]
  [./time_step]
    type = CriticalTimeStep
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

test/tests/multiapps/sub_cycling_failure/failure_with_max_procs_set.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = ' lu       superlu_dist                '
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub.i
    sub_cycling = true
    max_procs_per_app = 1
  [../]
[]

modules/porous_flow/test/tests/mass_conservation/mass05.i

# Checking that the mass postprocessor correctly calculates the mass
# of each component in each phase, as well as the total mass of each
# component in all phases.
# 2phase, 2component, constant porosity

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./sat]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 0.3
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0.55
  [../]
[]

[ICs]
  [./pinit]
    type = ConstantIC
    value = 1
    variable = pp
  [../]
  [./satinit]
    type = FunctionIC
    function = 1-x
    variable = sat
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sat
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp sat'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = pp
    phase1_saturation = sat
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Postprocessors]
  [./comp0_phase0_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    phase = 0
  [../]
  [./comp0_phase1_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    phase = 1
  [../]
  [./comp0_total_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
  [../]
  [./comp0_total_mass2]
    type = PorousFlowFluidMass
    fluid_component = 0
    phase = '0 1'
  [../]
  [./comp1_phase0_mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = 0
  [../]
  [./comp1_phase1_mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = 1
  [../]
  [./comp1_total_mass]
    type = PorousFlowFluidMass
    fluid_component = 1
  [../]
  [./comp1_total_mass2]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = '0 1'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1e-16
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mass05
  csv = true
[]

modules/tensor_mechanics/test/tests/finite_strain_elastic/finite_strain_elastic_new_test.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = '0.01 * t'
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = FINITE
        add_variables = true
      [../]
    [../]
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1.684e5 0.176e5 0.176e5 1.684e5 0.176e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.05
  num_steps = 10
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/petsc_options/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm ilu'
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/explicit-euler/ee-2d-linear.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = (x+y)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*(x+y)
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
    lumping = true
    implicit = true
  [../]

  [./diff]
    type = Diffusion
    variable = u
    implicit = false
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
    implicit = false
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = '0 1 2 3'
    function = exact_fn
    implicit = true
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'explicit-euler'
  solve_type = 'LINEAR'

  start_time = 0.0
  num_steps = 20
  dt = 0.00005
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/functional_expansion_tools/test/tests/standard_use/multiapp_print_coefficients.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = Diffusion
    variable = m
  [../]
  [./time_diff_m]
    type = TimeDerivative
    variable = m
  [../]
  [./s_in]
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'left right'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
    print_when_set = true # Print coefficients when a MultiAppFXTransfer is executed
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
    print_state = true # Print after the FX coefficients are computer
    print_when_set = true # Print coefficients when a MultiAppFXTransfer is executed
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = multiapp_sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

modules/tensor_mechanics/test/tests/visco/gen_maxwell_relax.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    variable = stress_xx
    rank_two_tensor = stress
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./strain_xx]
    type = RankTwoAux
    variable = strain_xx
    rank_two_tensor = total_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    variable = creep_strain_xx
    rank_two_tensor = creep_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./disp]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value    = 0.001
  [../]
[]

[Materials]
  [./maxwell]
    type = GeneralizedMaxwellModel
    creep_modulus = '3.333333e9 3.333333e9'
    creep_viscosity = '1 10'
    poisson_ratio = 0.2
    young_modulus = 10e9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'creep'
  [../]
  [./creep]
    type = LinearViscoelasticStressUpdate
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./update]
    type = LinearViscoelasticityManager
    viscoelastic_model = maxwell
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./creep_strain_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  l_max_its  = 50
  l_tol      = 1e-8
  nl_max_its = 20
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-6

  dtmin = 0.01
  end_time = 100
  [./TimeStepper]
    type = LogConstantDT
    first_dt = 0.1
    log_dt = 0.1
  [../]

[]

[Outputs]
  file_base = gen_maxwell_relax_out
  exodus = true
[]

test/tests/geomsearch/2d_moving_penetration/restart2.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test1.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  dt = 0.05
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

[Problem]
  restart_file_base = restart_out_cp/0010
[]

modules/combined/test/tests/poro_mechanics/pp_generation.i

# A sample is constrained on all sides and its boundaries are
# also impermeable.  Fluid is pumped into the sample via a
# volumetric source (ie m^3/second per cubic meter), and the
# rise in porepressure is observed.
#
# Source = s  (units = 1/second)
#
# Expect:
# porepressure = Biot-Modulus*s*t
# stress = 0 (remember this is effective stress)
#
# Parameters:
# Biot coefficient = 0.3
# Porosity = 0.1
# Bulk modulus = 2
# Shear modulus = 1.5
# fluid bulk modulus = 1/0.3 = 3.333333
# 1/Biot modulus = (1 - 0.3)*(0.3 - 0.1)/2 + 0.1*0.3 = 0.1. BiotModulus = 10
# s = 0.1
#
# Expect
# porepressure = t
# stress = 0


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
[]


[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PoroMechanicsCoupling
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PoroMechanicsCoupling
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PoroMechanicsCoupling
    variable = disp_z
    component = 2
  [../]
  [./poro_timederiv]
    type = PoroFullSatTimeDerivative
    variable = porepressure
  [../]
  [./source]
    type = BodyForce
    function = 0.1
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]



[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./poro_material]
    type = PoroFullSatMaterial
    porosity0 = 0.1
    biot_coefficient = 0.3
    solid_bulk_compliance = 0.5
    fluid_bulk_compliance = 0.3
    constant_porosity = true
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]

[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = pp_generation
  [./csv]
    type = CSV
  [../]
[]

modules/xfem/test/tests/crack_tip_enrichment/edge_crack_2d.i

[XFEM]
  qrule = volfrac
  output_cut_plane = true
  use_crack_tip_enrichment = true
  crack_front_definition = crack_tip
  enrichment_displacements = 'enrich1_x enrich2_x enrich3_x enrich4_x enrich1_y enrich2_y enrich3_y enrich4_y'
  displacements = 'disp_x disp_y'
  cut_off_boundary = all
  cut_off_radius = 0.2
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.0 1.0 0.5 1.0'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./crack_tip]
    type = CrackFrontDefinition
    crack_direction_method = CrackDirectionVector
    crack_front_points = '0.5 1.0 0'
    crack_direction_vector = '1 0 0'
    2d = true
    axis_2d = 2
  [../]
[]

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 5
    ny = 9
    xmin = 0.0
    xmax = 1.0
    ymin = 0.0
    ymax = 2.0
    elem_type = QUAD4
  []
  [./all_node]
    type = BoundingBoxNodeSetGenerator
    new_boundary = 'all'
    top_right = '1 2 0'
    bottom_left = '0 0 0'
    input = gen
  [../]
  [./right_bottom_node]
    type = ExtraNodesetGenerator
    new_boundary = 'right_bottom_node'
    coord = '1.0 0.0'
    input = all_node
  [../]
  [./right_top_node]
    type = ExtraNodesetGenerator
    new_boundary = 'right_top_node'
    coord = '1.0 2.0'
    input = right_bottom_node
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
 [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = vonmisesStress
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./top_y]
    type = Pressure
    variable = disp_y
    boundary = top
    component = 1
    factor = -1
  [../]
  [./bottom_y]
    type = Pressure
    variable = disp_y
    boundary = bottom
    component = 1
    factor = -1
  [../]
  [./fix_y]
    type = DirichletBC
    boundary = right_bottom_node
    variable = disp_y
    value = 0.0
  [../]
  [./fix_x]
    type = DirichletBC
    boundary = right_bottom_node
    variable = disp_x
    value =  0.0
  [../]
  [./fix_x2]
    type = DirichletBC
    boundary = right_top_node
    variable = disp_x
    value =  0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeCrackTipEnrichmentSmallStrain
    displacements = 'disp_x disp_y'
    crack_front_definition = crack_tip
    enrichment_displacements = 'enrich1_x enrich2_x enrich3_x enrich4_x enrich1_y enrich2_y enrich3_y enrich4_y'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  # Since we do not sub-triangularize the tip element,
  # we need to use higher order quadrature rule to improve
  # integration accuracy.
  # Here second = SECOND is for regression test only.
  # However, order = SIXTH is recommended.
  [./Quadrature]
    type = GAUSS
    order = SECOND
  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

  # controls for linear iterations
  l_max_its = 10
  l_tol = 1e-4

  # controls for nonlinear iterations
  nl_max_its = 100
  nl_rel_tol = 1e-12 #11
  nl_abs_tol = 1e-12 #12

  # time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
  dtmin = 1.0
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]


[Outputs]
  file_base = edge_crack_2d_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/functional_expansion_tools/examples/2D_interface_different_submesh/sub.i

# Derived from the example '2D_interface' with the following differences:
#
#   1) The number of y divisions in the sub app is not the same as the master app
#   2) The subapp mesh is skewed in y
#   3) The Functional Expansion order for the flux term was increased to 7
[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0.4
  xmax = 2.4
  nx = 30
  ymin = 0.0
  ymax = 10.0
  ny = 23
  bias_y = 1.2
[]

[Variables]
  [./s]
  [../]
[]

[Kernels]
  [./diff_s]
    type = HeatConduction
    variable = s
  [../]
  [./time_diff_s]
    type = HeatConductionTimeDerivative
    variable = s
  [../]
[]

[Materials]
  [./Unobtanium]
    type = GenericConstantMaterial
    prop_names =  'thermal_conductivity specific_heat density'
    prop_values = '1.0                  1.0           1.0' # W/(cm K), J/(g K), g/cm^3
  [../]
[]

[ICs]
  [./start_s]
    type = ConstantIC
    value = 2
    variable = s
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = s
    boundary = bottom
    value = 0.1
  [../]
  [./interface_flux]
    type = FXFluxBC
    boundary = left
    variable = s
    function = FX_Basis_Flux_Sub
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '4'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
  [./FX_Basis_Flux_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '7'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXBoundaryValueUserObject
    function = FX_Basis_Value_Sub
    variable = s
    boundary = left
  [../]
  [./FX_Flux_UserObject_Sub]
    type = FXBoundaryFluxUserObject
    function = FX_Basis_Flux_Sub
    variable = s
    boundary = left
    diffusivity = thermal_conductivity
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1.0
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

modules/porous_flow/test/tests/dirackernels/bh07.i

# Comparison with analytical solution for cylindrically-symmetric situation
[Mesh]
  type = FileMesh
  file = bh07_input.e
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1000 10000'
    x = '100 1000'
  [../]
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./fflux]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
    gravity = '0 0 0'
  [../]
[]

[BCs]
  [./fix_outer]
    type = DirichletBC
    boundary = perimeter
    variable = pp
    value = 1E7
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1e-5
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-11 0 0 0 1E-11 0 0 0 1E-11'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityFLAC
    m = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    variable = pp
    SumQuantityUO = borehole_total_outflow_mass
    point_file = bh07.bh
    fluid_phase = 0
    bottom_p_or_t = 0
    unit_weight = '0 0 0'
    use_mobility = true
    re_constant = 0.1594  # use Chen and Zhang version
    character = 2 # double the strength because bh07.bh only fills half the mesh
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
    execute_on = 'initial timestep_end'
  [../]
  [./fluid_mass]
    type = PorousFlowFluidMass
    execute_on = 'initial timestep_end'
  [../]
[]

[VectorPostprocessors]
  [./pp]
    type = LineValueSampler
    variable = pp
    start_point = '0 0 0'
    end_point = '300 0 0'
    sort_by = x
    num_points = 300
    execute_on = timestep_end
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1E3
  solve_type = NEWTON
  [./TimeStepper]
    # get only marginally better results for smaller time steps
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = bh07
  [./along_line]
    type = CSV
    execute_on = final
  [../]
  [./exodus]
    type = Exodus
    execute_on = 'initial final'
  [../]
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/small_deform_harden3.i

# apply repeated stretches to observe cohesion hardening
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = x_disp
    boundary = front
    function = '0'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = y_disp
    boundary = front
    function = '0'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = front
    function = '2*t'
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wps_internal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./wps_internal_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = wps_internal
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./int]
    type = PointValue
    point = '0 0 0'
    variable = wps_internal
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1E3
    value_residual = 2E3
    rate = 0
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 0.577350269
    rate = 4E4
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.01745506
    value_residual = 0.01745506
    rate = 1E8
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 500
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 0.5E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-3
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1E-6
  dt = 1E-7
  type = Transient
[]


[Outputs]
  file_base = small_deform_harden3
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/richards/test/tests/dirac/bh_fu_07.i

#fullyupwind
[Mesh]
  type = FileMesh
  file = bh07_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  sat_UO = Saturation
  seff_UO = Seff1VG
  SUPG_UO = SUPGstandard
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1000 10000'
    x = '100 1000'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[BCs]
  [./fix_outer]
    type = DirichletBC
    boundary = perimeter
    variable = pressure
    value = 1E7
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh07.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    re_constant = 0.1594
    character = 2
    fully_upwind = true
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
    execute_on = 'initial timestep_end'
  [../]

  [./fluid_mass]
    type = RichardsMass
    variable = pressure
    execute_on = 'initial timestep_end'
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E7
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-11 0 0  0 1E-11 0  0 0 1E-11'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1000
  solve_type = NEWTON

  [./TimeStepper]
    # get only marginally better results for smaller time steps
    type = FunctionDT
    function = dts
  [../]

[]

[Outputs]
  file_base = bh_fu_07
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

modules/functional_expansion_tools/test/tests/standard_use/multiapp_different_physical_boundaries.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = Diffusion
    variable = m
  [../]
  [./time_diff_m]
    type = TimeDerivative
    variable = m
  [../]
  [./s_in]
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'left right'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '1.0  9.0'
    x = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = multiapp_sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

modules/porous_flow/test/tests/flux_limited_TVD_advection/fltvd_2D_trimesh.i

# Using Flux-Limited TVD Advection ala Kuzmin and Turek, with antidiffusion from superbee flux limiting
# 2D version
[Mesh]
  type = FileMesh
  file = trimesh.msh
[]

[GlobalParams]
  block = '50'
[]

[Variables]
  [./tracer]
  [../]
[]

[ICs]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.305,0,1))'
  [../]
[]

[Kernels]
  [./mass_dot]
    type = MassLumpedTimeDerivative
    variable = tracer
  [../]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = superbee
    u = tracer
    velocity = '0.1 0 0'
  [../]
[]

[BCs]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_tracer]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = right
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0.04 0'
    num_points = 101
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  timestep_tolerance = 1E-3
[]

[Outputs]
  print_linear_residuals = false
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform8.i

# Using CappedMohrCoulomb with tensile failure only
# A single unit element is stretched by 1E-6m in z direction.
# with Lame lambda = 0.6E6 and Lame mu (shear) = 1E6
# stress_zz = 2.6 Pa
# stress_xx = 0.6 Pa
# stress_yy = 0.6 Pa
# tensile_strength is set to 0.5Pa
#
# stress_zz = 0.5
# plastic multiplier = 2.1/2.6 E-6
# stress_xx = 0.6 - (2.1/2.6*0.6) = 0.115
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.0E-6*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0.6E6 1E6'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.0
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform8
  csv = true
[]

modules/porous_flow/test/tests/numerical_diffusion/pffltvd.i

# Using flux-limited TVD advection ala Kuzmin and Turek, employing PorousFlow Kernels and UserObjects, with superbee flux-limiter
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '1 - x'
  [../]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = tracer
  [../]
  [./flux0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = advective_flux_calculator_0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = porepressure
  [../]
  [./flux1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = porepressure
    advective_flux_calculator = advective_flux_calculator_1
  [../]
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1
    boundary = left
  [../]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_component_1]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 1
    use_mobility = true
    flux_function = 1E3
  [../]
  [./remove_component_0]
    type = PorousFlowPiecewiseLinearSink
    variable = tracer
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 0
    use_mobility = true
    flux_function = 1E3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      thermal_expansion = 0
      viscosity = 1.0
      density0 = 1000.0
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure tracer'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
  [./advective_flux_calculator_0]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 0
  [../]
  [./advective_flux_calculator_1]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = tracer
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = the_simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-2 0 0   0 1E-2 0   0 0 1E-2'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 101
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  nl_abs_tol = 1E-8
  timestep_tolerance = 1E-3
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/combined/test/tests/solid_mechanics/Wave_1_D/Rayleigh_Newmark/sm/wave_bc_1d_sm.i

# Wave propogation in 1-D using Newmark time integration in the
# presence of Rayleigh damping
#
# The test is for an 1-D bar element of length 4m fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the
# other end.  beta and gamma are Newmark time integration parameters
# eta and zeta are mass dependent and stiffness dependent Rayleigh
# damping coefficients, respectively.  The equation of motion in terms
# of matrices is:
#
# M*accel + (eta*M+zeta*K)*vel +K*disp = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# The displacement at the second, third and fourth node at t = 0.1 are
# -7.776268399030435152e-02, 1.949967184623528985e-02 and -4.615737877580032046e-03, respectively
[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = false
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    zeta = 0.1
  [../]
[]
[Kernels]
 [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.3025
    gamma = 0.6
    eta=0.1
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.3025
    gamma = 0.6
    eta=0.1
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.3025
    gamma = 0.6
    eta = 0.1
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.6
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
   type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
    [./bottom_x]
      type = DirichletBC
      variable = disp_x
      boundary = bottom
      value=0.0
    [../]
    [./bottom_z]
      type = DirichletBC
      variable = disp_z
      boundary = bottom
      value=0.0
    [../]
    [./bottom_y]
      type = FunctionDirichletBC
      variable = disp_y
      boundary = bottom
      function = displacement_bc
    [../]
[]

[Materials]
  [./constant]
     type = Elastic
     block = 0
     disp_x = disp_x
     disp_y = disp_y
     disp_z = disp_z
     youngs_modulus = 1
     poissons_ratio = 0
     thermal_expansion = 0
   [../]
    [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1'
  [../]

[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 6.0
  dtmax = 0.1
  dtmin = 0.1
#  l_tol = 1e-8
#  nl_rel_tol = 1e-8
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.001 1 0.001 0.0 0.0'
    scale_factor = 7750
  [../]
  [./displacement_ic]
    type = PiecewiseLinear
    axis = y
    x = '0.0 0.3 0.4 0.5 0.6 0.7 1.0'
    y = '0.0 0.0 0.0001 1.0 0.0001 0.0 0.0'
    scale_factor = 0.1
  [../]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
    [./disp_1]
       type = NodalVariableValue
       nodeid = 1
       variable = disp_y
     [../]
    [./disp_2]
       type = NodalVariableValue
       nodeid = 3
       variable = disp_y
     [../]
    [./disp_3]
       type = NodalVariableValue
       nodeid = 10
       variable = disp_y
     [../]
    [./disp_4]
       type = NodalVariableValue
       nodeid = 14
       variable = disp_y
     [../]
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

modules/combined/test/tests/frictional_contact/single_point_2d/single_point_2d_predictor.i

[Mesh]
  file = single_point_2d.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./horizontal_movement]
    type = ParsedFunction
    value = t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    save_in = 'saved_x saved_y'
    diag_save_in = 'diag_saved_x diag_saved_y'
  [../]
[]

[AuxKernels]
  [./incslip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./incslip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./botx2]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./boty2]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = -0.005
  [../]
[]

[Materials]
  [./bottom]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1.0e9
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
  [./top]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu    superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 200
  dt = 0.001
  end_time = 0.01
  num_steps = 1000
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  dtmin = 0.001
  l_tol = 1e-3

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = coulomb
    system = constraint
    friction_coefficient = '0.25'
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    master = '2'
    slave = '3'
  [../]
[]

modules/tensor_mechanics/examples/hyper_elastic_test.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 5
  use_displaced_mesh = false
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Functions]
  [./top_displacement]
    type = ParsedFunction
    value = t
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = 'disp_x'
    boundary = bottom
    value = 0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = 'disp_y'
    boundary = bottom
    value = 0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = 'disp_z'
    boundary = bottom
    value = 0
  [../]

  [./top_x]
    type = DirichletBC
    variable = 'disp_x'
    boundary = top
    value = 0
  [../]
  [./top_y]
    type = FunctionDirichletBC
    variable = 'disp_y'
    boundary = top
    function = top_displacement
  [../]
  [./top_z]
    type = DirichletBC
    variable = 'disp_z'
    boundary = top
    value = 0
  [../]
[]

[Kernels]
  [./x]
    type = ADStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./y]
    type = ADStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./z]
    type = ADStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
[]

[Materials]
  [./rubber_elasticity]
    type = ComputeIsotropicElasticityTensor
    # lambda = 1.2e7
    # shear_modulus = 1.2e7
    youngs_modulus = 1
    poissons_ratio = 0.45 # the closer this gets to 0.5 the worse the problem becomes
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeGreenLagrangeStrain
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 0.05
  dtmin = 0.05
  nl_abs_tol = 1e-10
  num_steps = 500
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
  exodus = true
  print_linear_residuals = false
[]

modules/phase_field/test/tests/actions/grain_growth.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  xmax = 400
  ymax = 400
  elem_type = QUAD
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Modules]
  [./PhaseField]
    [./GrainGrowth]
      variable_mobility = false
    [../]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalCircleGrainIC]
      radius = 300
      x = 400
      y = 0
      int_width = 60
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./gr1area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
  solve_type = 'NEWTON'
  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  num_steps = 5
  dt = 80.0
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/Time_integration/HHT_time_integration/HHT_test.i

# Test for  HHT time integration

# The test is for an 1-D bar element of unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# alpha, beta and gamma are HHT time integration parameters The
# equation of motion in terms of matrices is:
#
# M*accel + alpha*(K*disp - K*disp_old) + K*disp = P(t+alpha dt)*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + alpha*(Div stress - Div stress_old) +Div Stress= P(t+alpha dt)
#
# The first term on the left is evaluated using the Inertial force
# kernel The next two terms on the left involving alpha is evaluated
# using the StressDivergence Kernel The residual due to Pressure is
# evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure
# becomes constant.  Alpha equal to zero will result in Newmark
# integration.
[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./DynamicTensorMechanics]
   use_displaced_mesh = true
   alpha = 0.11
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
     type = RankTwoAux
     rank_two_tensor = stress
     variable = stress_yy
     index_i = 1
     index_j = 1
  [../]
  [./strain_yy]
     type = RankTwoAux
     rank_two_tensor = total_strain
     variable = strain_yy
     index_i = 1
     index_j = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
  [./bottom_x]
   type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
    boundary = bottom
    function = pressure
    factor = 1
    alpha = 0.11
    [../]
  [../]
[]

[Materials]
  [./elastic]
    type = ComputeIsotropicElasticityTensor
    block = '0'
    youngs_modulus = 210e+09
    poissons_ratio = 0
  [../]
  [./elastic_strain]
    type= ComputeFiniteStrain
    block = '0'
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
    block = '0'
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]
[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 2
  dtmax = 0.1
  dtmin = 0.1
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
  [./vel_ic]
    type = PiecewiseLinear
    x = '0.0 0.5 1.0'
    y = '0.1 0.1 0.1'
    scale_factor = 1
  [../]
[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
   [./disp]
     type = NodalMaxValue
     variable = disp_y
     boundary = bottom
   [../]
   [./vel]
     type = NodalMaxValue
     variable = vel_y
     boundary = bottom
   [../]
   [./accel]
     type = NodalMaxValue
     variable = accel_y
     boundary = bottom
   [../]
   [./stress_yy]
      type = ElementAverageValue
      variable = stress_yy
   [../]
   [./strain_yy]
      type = ElementAverageValue
      variable = strain_yy
   [../]

[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/poro_elasticity/pp_generation_unconfined_fully_saturated.i

# A sample is constrained on all sides, except its top
# and its boundaries are
# also impermeable.  Fluid is pumped into the sample via a
# volumetric source (ie kg/second per cubic meter), and the
# rise in the top surface, porepressure, and stress are observed.
#
# In the standard poromechanics scenario, the Biot Modulus is held
# fixed and the source has units 1/time.  Then the expected result
# is
# strain_zz = disp_z = BiotCoefficient*BiotModulus*s*t/((bulk + 4*shear/3) + BiotCoefficient^2*BiotModulus)
# porepressure = BiotModulus*(s*t - BiotCoefficient*strain_zz)
# stress_xx = (bulk - 2*shear/3)*strain_zz   (remember this is effective stress)
# stress_zz = (bulk + 4*shear/3)*strain_zz   (remember this is effective stress)
#
# In porous_flow, however, the source has units kg/s/m^3.  The ratios remain
# fixed:
# stress_xx/strain_zz = (bulk - 2*shear/3) = 1 (for the parameters used here)
# stress_zz/strain_zz = (bulk + 4*shear/3) = 4 (for the parameters used here)
# porepressure/strain_zz = 13.3333333 (for the parameters used here)
#
# Expect
# disp_z = 0.3*10*s*t/((2 + 4*1.5/3) + 0.3^2*10) = 0.612245*s*t
# porepressure = 10*(s*t - 0.3*0.612245*s*t) = 8.163265*s*t
# stress_xx = (2 - 2*1.5/3)*0.612245*s*t = 0.612245*s*t
# stress_zz = (2 + 4*shear/3)*0.612245*s*t = 2.44898*s*t
# The relationship between the constant poroelastic source
# s (m^3/second/m^3) and the PorousFlow source, S (kg/second/m^3) is
# S = fluid_density * s = s * exp(porepressure/fluid_bulk)
#
# Finally, note that the volumetric strain has
# consistent_with_displaced_mesh = false
# which is needed when using the FullySaturated version of the Kernels
# in order to generate the above results
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 2
    variable = disp_z
  [../]
  [./mass0]
    type = PorousFlowFullySaturatedMassTimeDerivative
    variable = porepressure
    coupling_type = HydroMechanical
    biot_coefficient = 0.3
  [../]
  [./source]
    type = BodyForce
    function = '0.1*exp(8.163265306*0.1*t/3.3333333333)'
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 3.3333333333
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
    consistent_with_displaced_mesh = false
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # the "const" is irrelevant here: all that uses Porosity is the BiotModulus, which just uses the initial value of porosity
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.3
    fluid_bulk_modulus = 3.3333333333
    solid_bulk_compliance = 0.5
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./stress_xx_over_strain]
    type = FunctionValuePostprocessor
    function = stress_xx_over_strain_fcn
    outputs = csv
  [../]
  [./stress_zz_over_strain]
    type = FunctionValuePostprocessor
    function = stress_zz_over_strain_fcn
    outputs = csv
  [../]
  [./p_over_strain]
    type = FunctionValuePostprocessor
    function = p_over_strain_fcn
    outputs = csv
  [../]
[]

[Functions]
  [./stress_xx_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'stress_xx zdisp'
  [../]
  [./stress_zz_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'stress_zz zdisp'
  [../]
  [./p_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'p0 zdisp'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = pp_generation_unconfined_fully_saturated
  [./csv]
    type = CSV
  [../]
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Postprocessors]
  [left_bc]
    type = NodalVariableValue
    nodeid = 0
    variable = u
  []
  [right_bc]
    type = NodalVariableValue
    nodeid = 10
    variable = u
  []
[]

[Outputs]
  csv = true
[]

python/peacock/tests/input_tab/InputTree/gold/lcf1.i

# LinearCombinationFunction function test
# See [Functions] block for a description of the tests
[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 2
  nx = 10
[]

[Variables]
  [dummy]
  []
[]

[Kernels]
  [dummy_u]
    type = TimeDerivative
    variable = dummy
  []
[]

[AuxVariables]
  [the_linear_combo]
  []
[]

[AuxKernels]
  [the_linear_combo]
    type = FunctionAux
    variable = the_linear_combo
    function = the_linear_combo
  []
[]

[Functions]
  [xtimes]
    type = ParsedFunction
    value = '1.1*x'
  []
  [twoxplus1]
    type = ParsedFunction
    value = '2*x+1'
  []
  [xsquared]
    type = ParsedFunction
    value = '(x-2)*x'
  []
  [tover2]
    type = ParsedFunction
    value = '0.5*t'
  []
  [the_linear_combo]
    type = LinearCombinationFunction
    functions = 'xtimes twoxplus1 xsquared tover2'
    w = '3 -1.2 0.4 3'
  []
  [should_be_answer]
    type = ParsedFunction
    value = '3*1.1*x-1.2*(2*x+1)+0.4*(x-2)*x+3*0.5*t'
  []
[]

[Postprocessors]
  [should_be_zero]
    type = NodalL2Error
    function = should_be_answer
    variable = 'the_linear_combo'
  []
[]

[Executioner]
  type = Transient
  dt = 0.5
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = lcf1
  hide = 'dummy'
  exodus = false
  csv = true
[]

modules/xfem/test/tests/init_solution_propagation/init_solution_propagation.i

# The purpose of this test is to verify that the procedures for initializing
# the solution on nodes/elements affected by XFEM works correctly in both
# serial and parallel.

# The crack cuts near to domain boundaries in parallel, and the displacement
# solution will be wrong in parallel if this is not done correctly.  This
# test also has multiple aux variables of various types that are only computed
# on initialization, and which will be wrong if the XFEM initializtion
# is not done correctly.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[XFEM]
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 7
  ny = 7
  xmin = 0.0
  xmax = 25.0
  ymin = -12.5
  ymax = 12.5
  elem_type = QUAD4
[]

[UserObjects]
  [./line_seg_cut_set_uo]
    type = LineSegmentCutSetUserObject
    cut_data ='0.0000e+000  0.0000e+000  5.5000e+000  0.0000e+000  0.0   0.0
               5.5000e+000  0.0000e+000  2.5500e+001  0.0000e+000  0.05  1.05'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./const_monomial]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./first_monomial]
    order = FIRST
    family = MONOMIAL
  [../]
  [./first_linear]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    planar_formulation = PLANE_STRAIN
  [../]
[]

[AuxKernels]
  [./const_monomial]
    type = FunctionAux
    function = 'dummy'
    variable = const_monomial
    execute_on = 'initial'
  [../]
  [./first_monomial]
    type = FunctionAux
    function = 'dummy'
    variable = first_monomial
    execute_on = 'initial'
  [../]
  [./first_linear]
    type = FunctionAux
    function = 'dummy'
    variable = first_linear
    execute_on = 'initial'
  [../]
[]

[Functions]
  [./dummy]
    type = ParsedFunction
    value = 'x*x+y*y'
  [../]
  [./disp_top_y]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.1'
  [../]
[]

[BCs]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = disp_top_y
  [../]

  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  petsc_options = '-snes_ksp_ew'

  l_max_its = 100
  nl_max_its = 25
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-8

  start_time = 0.0
  dt = 0.1
  end_time = 1.0
  max_xfem_update = 1
[]


[Outputs]
  exodus = true
  csv = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/glued_kinematic_dirac.i

# This is a dirac (contact formulation) version of glued_kinematic.i
[Mesh]
  file = blocks_2d_nogap.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.01
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e7
    poissons_ratio = 0.3
  [../]
  [./right]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = glued
    penalty = 1e+6
    system = diracKernel
  [../]
[]

modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoi_fromfile.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  nz = 0
  xmax = 250
  ymax = 250
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 8
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    coloring_algorithm = jp
    file_name = 'grains.txt'
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  exodus = true
[]

test/tests/nodalkernels/constraint_enforcement/upper-and-lower-bound.i

l=10
nx=100
num_steps=10

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmax = ${l}
  nx = ${nx}
[]

[Variables]
  [u]
  []
  [lm_upper]
  []
  [lm_lower]
  []
[]

[ICs]
  [u]
    type = FunctionIC
    variable = u
    function = 'x'
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = Diffusion
    variable = u
  []
  [ffn]
    type = BodyForce
    variable = u
    function = 'if(x<5,-1,1)'
  []
[]

[NodalKernels]
  [upper_bound]
    type = UpperBoundNodalKernel
    variable = lm_upper
    v = u
    exclude_boundaries = 'left right'
    upper_bound = 10
  []
  [forces_from_upper]
    type = CoupledForceNodalKernel
    variable = u
    v = lm_upper
    coef = -1
  []
  [lower_bound]
    type = LowerBoundNodalKernel
    variable = lm_lower
    v = u
    exclude_boundaries = 'left right'
    lower_bound = 0
  []
  [forces_from_lower]
    type = CoupledForceNodalKernel
    variable = u
    v = lm_lower
    coef = 1
  []
[]


[BCs]
  [left]
    type = DirichletBC
    boundary = left
    value = 0
    variable = u
  []
  [right]
    type = DirichletBC
    boundary = right
    value = ${l}
    variable = u
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  num_steps = ${num_steps}
  solve_type = NEWTON
  dtmin = 1
  petsc_options_iname = '-snes_max_linear_solve_fail -ksp_max_it -pc_type -sub_pc_factor_levels -snes_linesearch_type'
  petsc_options_value = '0                           30          asm      16                    basic'
[]

[Outputs]
  exodus = true
  [csv]
    type = CSV
    execute_on = 'nonlinear timestep_end'
  []
  [dof]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Debug]
  show_var_residual_norms = true
[]

[Postprocessors]
  [active_upper_lm]
    type = GreaterThanLessThanPostprocessor
    variable = lm_upper
    execute_on = 'nonlinear timestep_end'
    value = 1e-8
    comparator = 'greater'
  []
  [upper_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = ${fparse 10+1e-8}
    comparator = 'greater'
  []
  [active_lower_lm]
    type = GreaterThanLessThanPostprocessor
    variable = lm_lower
    execute_on = 'nonlinear timestep_end'
    value = 1e-8
    comparator = 'greater'
  []
  [lower_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = -1e-8
    comparator = 'less'
  []
  [nls]
    type = NumNonlinearIterations
  []
  [cum_nls]
    type = CumulativeValuePostprocessor
    postprocessor = nls
  []
[]

modules/solid_mechanics/test/tests/check_error/shear_modulus_sm.i

[Mesh]
  file = cube.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./goo]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    shear_modulus = -10.0
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/variables/time_derivatives_neighbor/test.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 4
  nx = 2
[]

[Functions]
  [a_fn]
    type = ParsedFunction
    value = 't*(t+x)'
  []
[]

[AuxVariables]
  [a]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[AuxKernels]
  [a_ak]
    type = FunctionAux
    variable = a
    function = a_fn
  []
[]

[Materials]
  [cm]
    type = CoupledValuesMaterial
    variable = a
  []
[]

[Variables]
  [u]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[Kernels]
  [td]
    type = TimeDerivative
    variable = u
  []
[]

[DGKernels]
  [dgk]
    type = MatDGKernel
    variable = u
    mat_prop = a_value
  []
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 3

  [TimeIntegrator]
    type = NewmarkBeta
  []
  [Quadrature]
    type = GAUSS
    order = FIRST
  []
[]

[Outputs]
  [./out]
    type = Exodus
    output_material_properties = true
    show_material_properties = 'a_value a_dot a_dot_dot a_dot_du a_dot_dot_du'
  [../]
[]

test/tests/controls/time_periods/kernels/kernels.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff0]
    type = CoefDiffusion
    variable = u
    coef = 0.05
  [../]
  [./diff1]
    type = CoefDiffusion
    variable = u
    coef = 0.5
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Controls]
  [./diff]
    type = TimePeriod
    enable_objects = 'Kernel::diff0'
    disable_objects = '*::diff1'
    start_time = '0'
    end_time = '0.49'
  [../]
[]

modules/porous_flow/test/tests/aux_kernels/darcy_velocity.i

# checking that the PorousFlowDarcyVelocityComponent AuxKernel works as expected
# for the fully-saturated case (relative-permeability = 1)
# There is one element, of unit size.  The pressures and fluid densities at the qps are:
# (x,y,z)=( 0.211325 , 0.211325 , 0.211325 ).  p = 1.479   rho = 3.217
# (x,y,z)=( 0.788675 , 0.211325 , 0.211325 ).  p = 2.057   rho = 4.728
# (x,y,z)=( 0.211325 , 0.788675 , 0.211325 ).  p = 2.634   rho = 6.947
# (x,y,z)=( 0.788675 , 0.788675 , 0.211325 ).  p = 3.211   rho = 10.208
# (x,y,z)=( 0.211325 , 0.211325 , 0.788675 ).  p = 3.789   rho = 15.001
# (x,y,z)=( 0.788675 , 0.211325 , 0.788675 ).  p = 4.367   rho = 22.043
# (x,y,z)=( 0.211325 , 0.788675 , 0.788675 ).  p = 4.943   rho = 32.392
# (x,y,z)=( 0.788675 , 0.788675 , 0.788675 ).  p = 5.521   rho = 47.599
# Average density = 17.7668
# grad(P) = (1, 2, 4)
# with permeability = diag(1, 2, 3) and gravity = (1, -2, 3) and viscosity = 3.2
# So Darcy velocity = (5.23963, -23.4585, 46.2192)

[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '1 -2 3'
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pinit]
    type = FunctionIC
    function = x+2*y+4*z
    variable = pp
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[AuxVariables]
  [./vel_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vel_y]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vel_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./vel_x]
    type = PorousFlowDarcyVelocityComponent
    variable = vel_x
    component = x
    fluid_phase = 0
  [../]
  [./vel_y]
    type = PorousFlowDarcyVelocityComponent
    variable = vel_y
    component = y
    fluid_phase = 0
  [../]
  [./vel_z]
    type = PorousFlowDarcyVelocityComponent
    variable = vel_z
    component = z
    fluid_phase = 0
 [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      viscosity = 3.2
      density0 = 1.2
      thermal_expansion = 0
    [../]
  [../]
[]

[Postprocessors]
  [./vel_x]
    type = PointValue
    variable = vel_x
    point = '0.5 0.5 0.5'
  [../]
  [./vel_y]
    type = PointValue
    variable = vel_y
    point = '0.5 0.5 0.5'
  [../]
  [./vel_z]
    type = PointValue
    variable = vel_z
    point = '0.5 0.5 0.5'
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1e-16
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = darcy_velocity
  csv = true
[]

test/tests/kernels/2d_diffusion/matdiffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  xmax = 1.0
  ymax = 1.0
  elem_type = QUAD4
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./cres]
    type = MatDiffusion
    variable = u
    diffusivity = Du
  [../]
  [./ctime]
    type = TimeDerivative
    variable = u
  [../]
[]

[Materials]
  [./Dc]
    type = DerivativeParsedMaterial
    f_name = Du
    function = '0.01+u^2'
    args = 'u'
    derivative_order = 1
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = NeumannBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  scheme = 'BDF2'
  dt = 1
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/SoretDiffusion/direct_temp.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 30
  xmax = 500
  elem_type = EDGE
[]

[GlobalParams]
  polynomial_order = 8
[]

[Variables]
  [./c]
    family = HERMITE
    order = THIRD
  [../]
  [./T]
    initial_condition = 1000.0
    scaling = 1.0e5
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 125.0
    y1 = 0.0
    radius = 60.0
    invalue = 1.0
    outvalue = 0.1
    int_width = 100.0
    variable = c
  [../]
[]

[Kernels]
  [./c_int]
    type = CHInterface
    variable = c
    kappa_name = kappa
    mob_name = M
  [../]
  [./c_bulk]
    type = CahnHilliard
    variable = c
    mob_name = M
    f_name = F
  [../]
  [./c_soret]
    type = SoretDiffusion
    variable = c
    T = T
    diff_name = D
    Q_name = Qstar
  [../]
  [./c_dot]
    type = TimeDerivative
    variable = c
  [../]
  [./HtCond]
    type = MatDiffusion
    variable = T
    diffusivity = thermal_conductivity
  [../]
[]

[BCs]
  [./Left_T]
    type = DirichletBC
    variable = T
    boundary = left
    value = 1000.0
  [../]

  [./Right_T]
    type = DirichletBC
    variable = T
    boundary = right
    value = 1015.0
  [../]
[]

[Materials]
  [./Copper]
    type = PFParamsPolyFreeEnergy
    c = c
    T = T # K
    int_width = 60.0
    length_scale = 1.0e-9
    time_scale = 1.0e-9
    D0 = 3.1e-5 # m^2/s, from Brown1980
    Em = 0.71 # in eV, from Balluffi1978 Table 2
    Ef = 1.28 # in eV, from Balluffi1978 Table 2
    surface_energy = 0.708 # Total guess
  [../]
  [./thcond]
    type = ParsedMaterial
    args = 'c'
    function = 'if(c>0.7,1e-8,4e-8)'
    f_name = thermal_conductivity
    outputs = exodus
  [../]
  [./free_energy]
    type = PolynomialFreeEnergy
    c = c
    derivative_order = 3
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'PJFNK'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 25
  nl_rel_tol = 1.0e-9

  num_steps = 60
  dt = 8.0
[]

[Outputs]
  exodus = true
[]

test/tests/restart/restart_transient_from_steady/restart_trans_with_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Problem]
  restart_file_base = steady_with_sub_out_cp/LATEST
  skip_additional_restart_data = true
[]

[AuxVariables]
  [Tf]
  []
[]

[Variables]
  [power_density]
  []
[]

[Functions]
  [pwr_func]
    type = ParsedFunction
    value = '1e3*x*(1-x)+5e2' # increase this function to drive transient
  []
[]

[Kernels]
  [timedt]
    type = TimeDerivative
    variable = power_density
  []

  [diff]
    type = Diffusion
    variable = power_density
  []

  [coupledforce]
    type = BodyForce
    variable = power_density
    function = pwr_func
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = power_density
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = power_density
    boundary = right
    value = 1e3
  []
[]

[Postprocessors]
  [pwr_avg]
    type = ElementAverageValue
    block = '0'
    variable = power_density
    execute_on = 'initial timestep_end'
  []
  [temp_avg]
    type = ElementAverageValue
    variable = Tf
    block = '0'
    execute_on = 'initial timestep_end'
  []
  [temp_max]
    type = ElementExtremeValue
    value_type = max
    variable = Tf
    block = '0'
    execute_on = 'initial timestep_end'
  []
  [temp_min]
    type = ElementExtremeValue
    value_type = min
    variable = Tf
    block = '0'
    execute_on = 'initial timestep_end'
  []
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 1.0

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart '
  petsc_options_value = 'hypre boomeramg 100'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-7

  picard_rel_tol = 1e-7
  picard_abs_tol = 1e-07
  picard_max_its = 4

  line_search = none
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files  = restart_trans_with_sub_sub.i
    execute_on = 'timestep_end'
  [../]
[]

[Transfers]
  [p_to_sub]
    type = MultiAppMeshFunctionTransfer
    direction = to_multiapp
    source_variable = power_density
    variable = power_density
    multi_app = sub
    execute_on = 'timestep_end'
  []
  [t_from_sub]
    type = MultiAppMeshFunctionTransfer
    direction = from_multiapp
    source_variable = temp
    variable = Tf
    multi_app = sub
    execute_on = 'timestep_end'
  []
[]

[Outputs]
  exodus = true
  csv = true
  checkpoint = true
  perf_graph = true
[]

test/tests/executioners/transient_sync_time/transient_time_interval_output_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./bc_func]
    type = ParsedFunction
    value = sin(pi*0.1*x*t)
  [../]

  # Laplacian of the function above
  [./interior_func]
    type = ParsedFunction
    value = 0.01*pi*pi*t*t*sin(0.1*pi*x*t)
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = BodyForce
    variable = u
    function = interior_func
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = bc_func
  [../]
[]

[Executioner]
  type = Transient

  dt = 1
  start_time = 0
  num_steps = 10

  # These times will be sync'd in the output
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_tio
  interval = 3
  csv = true
  [./exodus]
    type = Exodus
    execute_on = 'final timestep_end'
  [../]
[]

modules/solid_mechanics/test/tests/interaction_integral/interaction_integral_3d_points.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = crack3d.e
#  partitioner = centroid
#  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  crack_front_points = '0 -10 .5
                        0 -10 0
                        0 -10 -.5'
  closed_loop = false # if user provides 'crack_front_points' instead of 'boundary', 'closed_loop' should be set by user!
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

#  [./pin_x]
#    type = DirichletBC
#    variable = disp_x
#    boundary = 200
#    value = 0.0
#  [../]
#
#  [./pin_y]
#    type = DirichletBC
#    variable = disp_y
#    boundary = 200
#    value = 0.0
#  [../]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

 # [./nocrack_y]
 #   type = DirichletBC
 #   variable = disp_y
 #   boundary = 600
 #   value = 0.0
 # [../]

# [./no_x]
#   type = DirichletBC
#   variable = disp_x
#   boundary = 500
#   value = 0.0
# [../]
# [./no_y]
#   type = DirichletBC
#   variable = disp_y
#   boundary = 500
#   value = 0.0
# [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-7
   l_tol = 1e-3

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = interaction_integral_3d_points_out
  exodus = true
  csv = true
[]

test/tests/postprocessors/mms_sine/3_d_mms_sine_postprocessor_test.i

#mms_sine_posprocessor_test.i
#This is for u = sin(a*x*y*z*t)
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 4
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 1
  elem_type = HEX8
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions] #Added so that we can use the Postprocessor
  active = 'solution'

  [./solution]
    type = ParsedFunction
    value = sin(a*x*y*z*t)
    vars = 'a'
    vals = '3.141592653589793'
  [../]
[]

[AuxVariables] #We added nodal AuxVariables
  active = 'nodal_aux'

  [./nodal_aux]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]

  active = 'diff implicit conv forcing reaction'

  [./diff]
    type = MMSDiffusion
    variable = u
  [../]

  [./implicit] #We got from MOOSE kernels
    type = MMSImplicitEuler
    variable = u
  [../]

  [./conv] #We created our own convection kernel
    type = MMSConvection
    variable = u
    x = -1
    y = 2
    z = -3
  [../]

  [./forcing] #We created our own forcing kernel
    type = MMSForcing
    variable = u
  [../]

  [./reaction] #We got from MOOSE kernels
    type = MMSReaction
    variable = u
  [../]
[]

[AuxKernels] #We created our own AuxKernel
  active = 'ConstantAux'

  [./ConstantAux]
    type = MMSConstantAux
    variable = nodal_aux
  [../]
[]

[BCs]
  active = 'all_u'

  [./all_u]
    type = MMSCoupledDirichletBC
    variable = u
    boundary = '0 1 2 3 4 5'
 #   value = sin(a*x*y*z*t)
  [../]
[]

[Executioner]
  type = Transient
  dt = .1
  num_steps = 5

  solve_type = 'PJFNK'
[]

[Postprocessors]
  active = 'l2_error dofs'

  [./l2_error]
    type = ElementL2Error
    variable = u
    function = solution
    execute_on = 'initial timestep_end'
  [../]

  [./dofs]
    type = NumDOFs
    execute_on = 'initial timestep_end'
  [../]
[]


[Outputs]
  file_base = 3_d_postprocessor_out
  csv = true
[]

modules/combined/test/tests/phase_field_fracture_viscoplastic/crack2d.i

[Mesh]
  type = FileMesh
  file = crack_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./All]
        add_variables = true
        strain = Finite
        additional_generate_output = stress_yy
        save_in = 'resid_x resid_y'
      [../]
    [../]
  [../]
  [./PhaseField]
    [./Nonconserved]
      [./c]
        free_energy = E_el
        mobility = L
        kappa = kappa_op
      [../]
    [../]
  [../]
[]

[AuxVariables]
  [./resid_x]
  [../]
  [./resid_y]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./peeq]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./solid_x]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_x
    component = 0
    c = c
    use_displaced_mesh = true
  [../]
  [./solid_y]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_y
    component = 1
    c = c
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./peeq]
    type = MaterialRealAux
    variable = peeq
    property = ep_eqv
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = '0.0001*t'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0
  [../]
[]

[UserObjects]
  [./flowstress]
    type = HEVPLinearHardening
    yield_stress = 300
    slope = 1000
    intvar_prop_name = ep_eqv
  [../]
  [./flowrate]
    type = HEVPFlowRatePowerLawJ2
    reference_flow_rate = 0.0001
    flow_rate_exponent = 10.0
    flow_rate_tol = 1
    strength_prop_name = flowstress
  [../]
  [./ep_eqv]
     type = HEVPEqvPlasticStrain
     intvar_rate_prop_name = ep_eqv_rate
  [../]
  [./ep_eqv_rate]
     type = HEVPEqvPlasticStrainRate
     flow_rate_prop_name = flowrate
  [../]
[]

[Materials]
  [./pfbulkmat]
    type = GenericConstantMaterial
    prop_names = 'l visco'
    prop_values = '0.08 1'
  [../]
  [./pfgc]
    type = GenericFunctionMaterial
    prop_names = 'gc_prop'
    prop_values = '1.0e-3'
  [../]
  [./define_mobility]
    type = ParsedMaterial
    material_property_names = 'gc_prop visco'
    f_name = L
    function = '1/(gc_prop * visco)'
  [../]
  [./define_kappa]
    type = ParsedMaterial
    material_property_names = 'gc_prop l'
    f_name = kappa_op
    function = 'gc_prop * l'
  [../]
  [./viscop_damage]
    type = HyperElasticPhaseFieldIsoDamage
    resid_abs_tol = 1e-18
    resid_rel_tol = 1e-8
    maxiters = 50
    max_substep_iteration = 5
    flow_rate_user_objects = 'flowrate'
    strength_user_objects = 'flowstress'
    internal_var_user_objects = 'ep_eqv'
    internal_var_rate_user_objects = 'ep_eqv_rate'
    numerical_stiffness = false
    damage_stiffness = 1e-8
    c = c
    F_name = E_el
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
  [../]
[]

[Postprocessors]
  [./resid_x]
    type = NodalSum
    variable = resid_x
    boundary = 2
  [../]
  [./resid_y]
    type = NodalSum
    variable = resid_y
    boundary = 2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_rel_tol = 1e-8

  l_max_its = 10
  nl_max_its = 10

  dt = 1
  dtmin = 1e-4
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/domain_integral_thermal/j_integral_2d_inst_ctefunc.i

# This tests the thermal term in the J-integral with a temperature-
# dependent coefficient of thermal expansion.  This version of the
# uses an instantaneous CTE function that is equivalent to a mean
# CTE function in an accompanying test, and results should be nearly
# identical for these two tests.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
[]

[Mesh]
  file = crack2d.e
  displacements = 'disp_x disp_y'
#  uniform_refine = 3
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*x/504)
  [../]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-6'
    value = 'scale * (0.5 * t^2 - 0.5 * tsf^2) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '-10 -10
                10  10'
    scale_factor = 1e-6
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 400
    value = 0.0
  [../]

  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = 900
    value = 0.0
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
#    thermal_expansion = 1.35e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
    temp = temp
    stress_free_temperature = 0.0
    thermal_expansion_function = cte_func_inst
    thermal_expansion_function_type = instantaneous
  [../]
[]


[Executioner]

  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 40

   nl_rel_step_tol= 1e-10
   nl_rel_tol = 1e-10


   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  execute_on = 'timestep_end'
  csv = true
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

modules/solid_mechanics/test/tests/j_integral/j_integral_2d_mouth_dir.i

#This tests the J-Integral evaluation capability.
#This is a 2d plane strain model
#Crack direction is defined using the crack mouth coordinates.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
[]

[Mesh]
  file = crack2d.e
  displacements = 'disp_x disp_y'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackMouth
  crack_mouth_boundary = 900
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = j_integral_2d_mouth_dir_out
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/phase_field_kernels/MatGradSquareCoupled.i

#
# Test the MatGradSquareCoupled kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  nz = 0
  xmin = 0
  xmax = 50
  ymin = 0
  ymax = 50
  zmin = 0
  zmax = 50
  elem_type = QUAD4
[]

[Variables]
  [./w]
  [../]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 25.0
      y1 = 25.0
      radius = 6.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 3.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
  [./ACBulk]
    type = CoupledAllenCahn
    variable = w
    v = eta
    f_name = F
    mob_name = 1
  [../]
  [./W]
    type = MatReaction
    variable = w
    mob_name = -1
  [../]
  [./CoupledBulk]
    type = MatReaction
    variable = eta
    v = w
    mob_name = L
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = 1
    mob_name = L
    args = w
  [../]
# MatGradSquareCoupled kernel
  [./nabla_eta]
    type = MatGradSquareCoupled
    variable = w
    elec_potential = eta
    prefactor = 0.5
  [../]
[]

[Materials]
  [./mobility]
    type = DerivativeParsedMaterial
    f_name  = L
    args = 'eta w'
    function = '(1.5-eta)^2+(1.5-w)^2'
    derivative_order = 2
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta'
    function = 'eta^2 * (1-eta)^2'
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'PJFNK'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 2
  dt = 0.5
[]

[Outputs]
  hide = w
  exodus = true
  console = true
[]

test/tests/kernels/array_kernels/array_diffusion_reaction_transient.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
[]

[Variables]
  [u]
    order = FIRST
    family = LAGRANGE
    components = 2
  []
[]

[Kernels]
  [dudt]
    type = ArrayTimeDerivative
    variable = u
    time_derivative_coefficient = tc
  []
  [diff]
    type = ArrayDiffusion
    variable = u
    diffusion_coefficient = dc
  []
  [reaction]
    type = ArrayReaction
    variable = u
    reaction_coefficient = rc
  []
[]

[BCs]
  [left]
    type = ArrayDirichletBC
    variable = u
    boundary = 1
    values = '0 0'
  []

  [right]
    type = ArrayDirichletBC
    variable = u
    boundary = 2
    values = '1 2'
  []
[]

[Materials]
  [tc]
    type = GenericConstantArray
    prop_name = tc
    prop_value = '1 1'
  []
  [dc]
    type = GenericConstantArray
    prop_name = dc
    prop_value = '1 1'
  []
  [rc]
    type = GenericConstant2DArray
    prop_name = rc
    prop_value = '1 0; -0.1 1'
  []
[]

[Postprocessors]
  [intu0]
    type = ElementIntegralArrayVariablePostprocessor
    variable = u
    component = 0
  []
  [intu1]
    type = ElementIntegralArrayVariablePostprocessor
    variable = u
    component = 1
  []
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  dt = 0.1
  num_steps = 10
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/gap_heat_transfer_htonly/cyl3D.i

#
# 3D Cylindrical Gap Heat Transfer Test.
#
# This test exercises 3D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of an inner solid cylinder of radius = 1 unit, and outer
# hollow cylinder with an inner radius of 2. In other words, the gap between
# them is 1 radial unit in length.
#
# The conductivity of both cylinders is set very large to achieve a uniform
# temperature in each cylinder. The temperature of the center node of the
# inner cylinder is ramped from 100 to 200 over one time unit. The temperature
# of the outside of the outer, hollow cylinder is held fixed at 100.
#
# A simple analytical solution is possible for the integrated heat flux
# between the inner and outer cylinders:
#
#  Integrated Flux = (T_left - T_right) * (gapK/(r*ln(r2/r1))) * Area
#
# For gapK = 1 (default value)
#
# The area is taken as the area of the slave (inner) surface:
#
# Area = 2 * pi * h * r, where h is the height of the cylinder.
#
# The integrated heat flux across the gap at time 1 is then:
#
# 2*pi*h*k*delta_T/(ln(r2/r1))
# 2*pi*1*1*100/(ln(2/1)) = 906.5 watts
#
# For comparison, see results from the integrated flux post processors.
# This simulation makes use of symmetry, so only 1/4 of the cylinders is meshed
# As such, the integrated flux from the post processors is 1/4 of the total,
# or 226.6 watts.
# The value coming from the post processor is slightly less than this
# but converges as mesh refinement increases.
#
# Simulating contact is challenging. Regression tests that exercise
# contact features can be difficult to solve consistently across multiple
# platforms. While designing these tests, we felt it worth while to note
# some aspects of these tests. The following applies to:
# sphere3D.i, sphere2DRZ.i, cyl2D.i, and cyl3D.i.
# 1. We decided that to perform consistently across multiple platforms we
# would use very small convergence tolerance. In this test we chose an
# nl_rel_tol of 1e-12.
# 2. Due to such a high value for thermal conductivity (used here so that the
# domains come to a uniform temperature) the integrated flux at time = 0
# was relatively large (the value coming from SideIntegralFlux =
#  -_diffusion_coef[_qp]*_grad_u[_qp]*_normals[_qp] where the diffusion coefficient
# here is thermal conductivity).
# Even though _grad_u[_qp] is small, in this case the diffusion coefficient
# is large. The result is a number that isn't exactly zero and tends to
# fail exodiff. For this reason the parameter execute_on = initial should not
# be used. That parameter is left to default settings in these regression tests.
#
 [GlobalParams]
  order = SECOND
  family = LAGRANGE
  []


[Mesh]
  file = cyl3D.e
[]

[Functions]

  [./temp]
    type = PiecewiseLinear
    x = '0   1'
    y = '100 200'
  [../]
[]

[Variables]
  [./temp]
   initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_conductance]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Kernels]
  [./heat_conduction]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./gap_cond]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_conductance
    boundary = 2
  [../]
[]

[Materials]
  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 1000000.0
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
    gap_conductivity = 1
    quadrature = true
    gap_geometry_type = CYLINDER
    cylinder_axis_point_1 = '0 0 0'
    cylinder_axis_point_2 = '0 1 0'
  [../]
[]

[BCs]
  [./mid]
    type = FunctionDirichletBC
    boundary = 5
    variable = temp
    function = temp
  [../]
  [./temp_far_right]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  dt = 1
  dtmin = 0.01
  end_time = 1

  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-7

  [./Quadrature]
     order = fifth
     side_order = seventh
  [../]

[]

[Outputs]
  exodus = true
   [./Console]
    type = Console
   [../]
[]

[Postprocessors]
  [./temp_left]
    type = SideAverageValue
    boundary = 2
    variable = temp
  [../]

  [./temp_right]
    type = SideAverageValue
    boundary = 3
    variable = temp
  [../]

  [./flux_left]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
  [../]

  [./flux_right]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
  [../]
[]

modules/tensor_mechanics/test/tests/cp_slip_rate_integ/crysp_linesearch.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    block = 0
  [../]
  [./disp_y]
    block = 0
  [../]
  [./disp_z]
    block = 0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./gss1]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.0001*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss1
    property = gss
    index = 0
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCPSlipRateRes
    block = 0
    slip_sys_file_name = input_slip_sys.txt
    nss = 12
    num_slip_sys_flowrate_props = 2 #Number of properties in a slip system
    flowprops = '1 4 0.001 0.01 5 8 0.001 0.01 9 12 0.001 0.01'
    hprops = '1.0 541.5 60.8 109.8 2.5'
    gprops = '1 4 60.8 5 8 60.8 9 12 60.8'
    tan_mod_type = exact
    slip_incr_tol = 1
    maximum_substep_iteration = 12
    use_line_search = true
    rtol = 1e-8
    abs_tol = 1e-12
    line_search_method = 'BISECTION'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./gss1]
    type = ElementAverageValue
    variable = gss1
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 10
  dtmin = 0.05
  dtmax = 1e4

  num_steps = 10
[]

[Outputs]
  file_base = crysp_linesearch_out
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/multi/four_surface14.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
# SimpleTester3 with a = 0 and b = 1 and strength = 1.1
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 2.1E-6m in y direction and 3E-6 in z direction.
# trial stress_yy = 2.1 and stress_zz = 3.0
#
# This is similar to three_surface14.i, and a description is found there.
# The result should be stress_zz=1=stress_yy, with internal0=2
# and internal1=1.1

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2.1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '3.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int3]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./f3]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 3
    variable = f3
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
  [./int3]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 3
    variable = int3
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./f3]
    type = PointValue
    point = '0 0 0'
    variable = f3
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
  [./int3]
    type = PointValue
    point = '0 0 0'
    variable = int3
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple3]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2 simple3'
    max_NR_iterations = 4
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1'
    debug_jac_at_intnl = '1 1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = four_surface14
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform5.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out
# Use 'cap' smoothing


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.9E-6*y*sin(t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 50
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0
    value_residual = 0.8726646 # 50deg
    rate = 3000.0
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    tip_scheme = cap
    mc_tip_smoother = 0
    cap_start = 3
    cap_rate = 0.8
    mc_edge_smoother = 20
    yield_function_tolerance = 1E-8
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 150
  dt = 5
  type = Transient
[]


[Outputs]
  file_base = small_deform5
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/problems/step6b_transient_inflow.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 200
  ny = 10
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
[]

[Variables]
  [pressure]
  []
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[AuxVariables]
  [velocity]
    order = CONSTANT
    family = MONOMIAL_VEC
  []
[]

[Kernels]
  [darcy_pressure]
    type = DarcyPressure
    variable = pressure
  []
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
  [heat_convection]
    type = DarcyAdvection
    variable = temperature
    pressure = pressure
  []
[]

[AuxKernels]
  [velocity]
    type = DarcyVelocity
    variable = velocity
    execute_on = timestep_end
    pressure = pressure
  []
[]

[Functions]
  [inlet_function]
    type = ParsedFunction
    value = 2000*sin(0.466*pi*t) # Inlet signal from Fig. 3
  []
  [outlet_function]
    type = ParsedFunction
    value = 2000*cos(0.466*pi*t) # Outlet signal from Fig. 3
  []
[]

[BCs]
  [inlet]
    type = FunctionDirichletBC
    variable = pressure
    boundary = left
    function = inlet_function
  []
  [outlet]
    type = FunctionDirichletBC
    variable = pressure
    boundary = right
    function = outlet_function
  []
  [inlet_temperature]
    type = FunctionDirichletBC
    variable = temperature
    boundary = left
    function = 'if(t<0,350+50*t,350)'
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = right
  []
[]

[Materials]
  [column]
    type = PackedColumn
    radius = 1
    temperature = temperature
    fluid_viscosity_file = data/water_viscosity.csv
    fluid_density_file = data/water_density.csv
    fluid_thermal_conductivity_file = data/water_thermal_conductivity.csv
    fluid_specific_heat_file = data/water_specific_heat.csv
    outputs = exodus
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  automatic_scaling = true

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  end_time = 100
  dt = 0.25
  start_time = -1

  steady_state_tolerance = 1e-5
  steady_state_detection = true

  [TimeStepper]
    type = FunctionDT
    function = 'if(t<0,0.1,(2*pi/(0.466*pi))/16)' # dt to always hit the peaks of sine/cosine BC
  []
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/glued_kinematic_dirac_sm.i

# This is a dirac (contact formulation) version of glued_kinematic.i
[Mesh]
  file = blocks_2d_nogap.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.01
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e7
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = glued
    penalty = 1e+6
    system = dirackernel
  [../]
[]

modules/combined/test/tests/thermo_mech/ad-thermo_mech.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  temperature = temp
  volumetric_locking_correction = true
[]

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]

  [./temp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_automatic_differentiation = true
  [../]

  [./heat]
    type = ADHeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./bottom_temp]
    type = DirichletBC
    variable = temp
    preset = false
    boundary = 1
    value = 10.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1.0
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ADComputeSmallStrain
    eigenstrain_names = eigenstrain
  [../]
  [./thermal_strain]
    type = ADComputeThermalExpansionEigenstrain
    stress_free_temperature = 0.0
    thermal_expansion_coeff = 1e-5
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
  [../]

  [./heat]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = ADDensity
    density = 1.0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-14
  l_tol = 1e-3

  l_max_its = 100

  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_drucker_prager/small_deform3_lode_zero.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-1.7E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E5
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E5
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    mc_interpolation_scheme = lode_zero
    yield_function_tolerance = 1      # irrelevant here
    internal_constraint_tolerance = 1 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-8
    tip_smoother = 8
    smoothing_tol = 1E-7
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3_lode_zero
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/porous_flow/test/tests/jacobian/brineco2_gas.i

# Tests correct calculation of properties derivatives in PorousFlowFluidState
# for conditions that give a single gas phase

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[AuxVariables]
  [./xnacl]
    initial_condition = 0.05
  [../]
[]

[Variables]
  [./pgas]
  [../]
  [./zi]
  [../]
[]

[ICs]
  [./pgas]
    type = RandomIC
    min = 5e4
    max = 1e5
    variable = pgas
  [../]
  [./z]
    type = RandomIC
    min = 0.9
    max = 0.99
    variable = zi
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = zi
    fluid_component = 1
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    variable = pgas
    fluid_component = 0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    variable = zi
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
    pc_max = 1e3
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = zi
    temperature_unit = Celsius
    xnacl = xnacl
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[AuxVariables]
  [./sgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./sgas]
    type = PorousFlowPropertyAux
    property = saturation
    phase = 1
    variable = sgas
  [../]
[]

[Postprocessors]
  [./sgas_min]
    type = ElementExtremeValue
    variable = sgas
    value_type = min
  [../]
  [./sgas_max]
    type = ElementExtremeValue
    variable = sgas
    value_type = max
  [../]
[]

test/tests/postprocessors/avg_nodal_var_value/avg_nodal_var_value_ts_begin.i

[Mesh]
  file = square-2x2-nodeids.e
[]

[Variables]
  active = 'u v'

  [./u]
    order = SECOND
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Functions]
  active = 'force_fn exact_fn left_bc'

  [./force_fn]
    type = ParsedFunction
    value = '1-x*x+2*t'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = '(1-x*x)*t'
  [../]

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = '
    time_u diff_u ffn_u
    time_v diff_v'

  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'all_u left_v right_v'

  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = exact_fn
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '2'
    value = 0
  [../]
[]

[Postprocessors]
  [./l2]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./node1]
    type = AverageNodalVariableValue
    variable = u
    boundary = 10
    execute_on = TIMESTEP_BEGIN
  [../]

  [./node4]
    type = AverageNodalVariableValue
    variable = v
    boundary = 13
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_avg_nodal_var_value_ts_begin
  exodus = true
[]

test/tests/executioners/executioner/sln-time-adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./dt]
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient
  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.1
  [../]
  scheme = 'implicit-euler'

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_sta
  exodus = true
[]

modules/tensor_mechanics/test/tests/beam/static/timoshenko_small_strain_y.i

# Test for small strain timoshenko beam bending in y direction

# A unit load is applied at the end of a cantilever beam of length 4m.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 2.60072400269
# Shear modulus (G) = 1.00027846257
# Poisson's ratio (nu) = 0.3
# Shear coefficient (k) = 0.85
# Cross-section area (A) = 0.554256
# Iy = 0.0141889 = Iz
# Length = 4 m

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 204.3734

# The small deformation analytical deflection of the beam is given by
# delta = PL^3/3EI * (1 + 3.0 / alpha) = 5.868e-4 m

# Using 10 elements to discretize the beam element, the FEM solution is 5.852e-2m.
# This deflection matches the FEM solution given in Prathap and Bhashyam (1982).

# References:
# Prathap and Bhashyam (1982), International journal for numerical methods in engineering, vol. 18, 195-210.
# Note that the force is scaled by 1e-4 compared to the reference problem.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = ConstantRate
    variable = disp_y
    boundary = right
    rate = 1.0e-4
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 2.60072400269
    poissons_ratio = 0.3
    shear_coefficient = 0.85
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.554256
    Ay = 0.0
    Az = 0.0
    Iy = 0.0141889
    Iz = 0.0141889
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_projection_transfer/fixed_meshes_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 5
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_sub]
  [../]
  [./elemental_from_sub]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.01
  solve_type = NEWTON
[]

[Outputs]
  exodus = true
  #
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0.0 0.0 0'
    input_files = fixed_meshes_sub.i
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppProjectionTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = from_sub
    fixed_meshes = true
  [../]
  [./elemental_from_sub]
    type = MultiAppProjectionTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = elemental_from_sub
    fixed_meshes = true
  [../]
  [./to_sub]
    type = MultiAppProjectionTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = from_master
    fixed_meshes = true
  [../]
  [./elemental_to_sub]
    type = MultiAppProjectionTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = elemental_from_master
    fixed_meshes = true
  [../]
[]

modules/tensor_mechanics/test/tests/ad_finite_strain_jacobian/3d_bar.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    xmin = 0
    xmax = 2
    ymin = 0
    ymax = 2
    zmin = 0
    zmax = 10
    nx = 10
    ny = 2
    nz = 2
    elem_type = HEX8
  []
  [corner]
    type = ExtraNodesetGenerator
    new_boundary = 101
    coord = '0 0 0'
    input = generated_mesh
  []
  [side]
    type = ExtraNodesetGenerator
    new_boundary = 102
    coord = '2 0 0'
    input = corner
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    use_finite_deform_jacobian = true
    volumetric_locking_correction = false
    use_automatic_differentiation = true
  [../]
[]

[Materials]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric9
    C_ijkl = '1.684e5 0.176e5 0.176e5 1.684e5 0.176e5 1.684e5 0.754e5 0.754e5 0.754e5'
  [../]
[]

[BCs]
 [./fix_corner_x]
   type = ADDirichletBC
   variable = disp_x
   boundary = 101
   value = 0
 [../]
 [./fix_corner_y]
   type = ADDirichletBC
   variable = disp_y
   boundary = 101
   value = 0
 [../]
 [./fix_side_y]
   type = ADDirichletBC
   variable = disp_y
   boundary = 102
   value = 0
 [../]
 [./fix_z]
   type = ADDirichletBC
   variable = disp_z
   boundary = back
   value = 0
 [../]
 [./move_z]
   type = ADFunctionDirichletBC
   variable = disp_z
   boundary = front
   function = 't'
 [../]
[]

[Executioner]
  type = Transient

  solve_type = NEWTON
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_max_its = 10

  l_tol  = 1e-4
  l_max_its = 50

  dt = 0.2
  dtmin = 0.2

  num_steps = 2
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/jacobian_1/jn_fu_16.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn16
  exodus = false
[]

test/tests/multiapps/restart_subapp_ic/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  ymin = 0
  xmax = 1
  ymax = 1
  nx = 10
  ny = 10
[]

[Functions]
  [./v_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./ufn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = v_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
  checkpoint = true
[]

[MultiApps]
  [./sub_app]
    app_type = MooseTestApp
    type = TransientMultiApp
    input_files = 'sub.i'
    execute_on = timestep_end
    positions = '0 -1 0'
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub_app
    source_variable = u
    variable = v
  [../]
[]

modules/chemical_reactions/test/tests/parser/equilibrium_without_action.i

# Test AqueousEquilibriumReactions parser

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
  [./pa2]
  [../]
  [./pab]
  [../]
[]

[AuxKernels]
  [./pa2]
    type = AqueousEquilibriumRxnAux
    variable = pa2
    v = a
    log_k = 2
    sto_v = 2
  [../]
  [./pab]
    type = AqueousEquilibriumRxnAux
    variable = pab
    v = 'a b'
    log_k = -2
    sto_v = '1 1'
  [../]
[]

[ICs]
  [./a]
    type = BoundingBoxIC
    variable = a
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 1
    inside = 1.0e-2
    outside = 1.0e-10
  [../]
  [./b]
    type = BoundingBoxIC
    variable = b
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 1
    inside = 1.0e-2
    outside = 1.0e-10
  [../]
  [./pressure]
    type = FunctionIC
    variable = pressure
    function = 2-x
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./a_conv]
    type = PrimaryConvection
    variable = a
    p = pressure
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./b_diff]
    type = PrimaryDiffusion
    variable = b
  [../]
  [./b_conv]
    type = PrimaryConvection
    variable = b
    p = pressure
  [../]
  [./a1_eq]
    type = CoupledBEEquilibriumSub
    variable = a
    log_k = 2
    weight = 2
    sto_u = 2
  [../]
  [./a1_diff]
    type = CoupledDiffusionReactionSub
    variable = a
    log_k = 2
    weight = 2
    sto_u = 2
  [../]
  [./a1_conv]
    type = CoupledConvectionReactionSub
    variable = a
    log_k = 2
    weight = 2
    sto_u = 2
    p = pressure
  [../]
  [./a2_eq]
    type = CoupledBEEquilibriumSub
    variable = a
    v = b
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./a2_diff]
    type = CoupledDiffusionReactionSub
    variable = a
    v = b
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./a2_conv]
    type = CoupledConvectionReactionSub
    variable = a
    v = b
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
    p = pressure
  [../]
  [./b2_eq]
    type = CoupledBEEquilibriumSub
    variable = b
    v = a
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./b2_diff]
    type = CoupledDiffusionReactionSub
    variable = b
    v = a
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./b2_conv]
    type = CoupledConvectionReactionSub
    variable = b
    v = a
    log_k = -2
    weight = 1
    sto_v = 1
    sto_u = 1
    p = pressure
  [../]
[]

[BCs]
  [./a_left]
    type = DirichletBC
    variable = a
    boundary = left
    value = 1.0e-2
  [../]
  [./a_right]
    type = ChemicalOutFlowBC
    variable = a
    boundary = right
  [../]
  [./b_left]
    type = DirichletBC
    variable = b
    boundary = left
    value = 1.0e-2
  [../]
  [./b_right]
    type = ChemicalOutFlowBC
    variable = b
    boundary = right
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-4 1e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  nl_abs_tol = 1e-12
  end_time = 10
  dt = 10
[]

[Outputs]
  file_base = equilibrium_out
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

test/tests/outputs/png/simple_transient_diffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [png]
    type = PNGOutput
    resolution = 25
    color = RWB
    variable = 'u'
  []
[]

modules/tensor_mechanics/test/tests/test_jacobian/jacobian_test_planestrain.i

# This test is designed to test the jacobian for a single
# element with/without volumetric locking correction.

# The mesh contains one element whose y displacement is zero at
# the bottom surface (y=0) and -1.0 at the top surface (y=1).

# Result: The hand coded jacobian matches well with the finite
# difference jacobian with an error norm in the order of 1e-15
# for total and incremental small strain formulations and with
# an error in the order of 1e-8 for finite strain formulations.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]

  [./y_force]
    type = NeumannBC
    variable = disp_y
    boundary = top
    value = -1.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = 0
  [../]
  [./strain]
    block = 0
  [../]
  [./stress]
    block = 0
  [../]
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient #Transient

  solve_type = NEWTON
  petsc_options = '-snes_check_jacobian -snes_check_jacobian_view'

  l_max_its = 100
  nl_abs_tol = 1e-4
  start_time = 0.0
  num_steps = 1
  dt = 0.005
  dtmin = 0.005
  end_time = 0.005
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/mortar_tm/2d/frictionless_first/finite_noaction.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_noaction'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]

  [./slave]
    input = block_sidesets
    type = LowerDBlockFromSidesetGenerator
    sidesets = 'block_left'
    new_block_id = '30'
    new_block_name = 'frictionless_slave_subdomain'
  [../]
  [./master]
    input = slave
    type = LowerDBlockFromSidesetGenerator
    sidesets = 'plank_right'
    new_block_id = '20'
    new_block_name = 'frictionless_master_subdomain'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./frictionless_normal_lm]
    order = ${order}
    block = 'frictionless_slave_subdomain'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
  [../]
[]

[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = block_left
    master = plank_right
    variable = frictionless_normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = min
    use_displaced_mesh = true
  [../]
  [./normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = plank_right
    slave_boundary = block_left
    master_subdomain = frictionless_master_subdomain
    slave_subdomain = frictionless_slave_subdomain
    variable = frictionless_normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  [../]
  [./normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = plank_right
    slave_boundary = block_left
    master_subdomain = frictionless_master_subdomain
    slave_subdomain = frictionless_slave_subdomain
    variable = frictionless_normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/richards/test/tests/jacobian_1/jn17.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true with supg

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
    use_supg = true
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn16
  exodus = false
[]

modules/combined/test/tests/solid_mechanics/Wave_1_D/HHT_time_integration/sm/wave_bc_1d_sm.i

# Wave propogation in 1-D using HHT time integration
#
# The test is for an 1-D bar element of length 4m  fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the other end.
# alpha, beta and gamma are Newmark  time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel + K*((1+alpha)*disp-alpha*disp_old) = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# The displacement at the second, third and fourth node at t = 0.1 are
# -8.097405701570538350e-02, 2.113131879547342634e-02 and -5.182787688751439893e-03, respectively.

[GlobalParams]
  volumetric_locking_correction = false
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    alpha = -0.3
  [../]
[]
[Kernels]
 [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.3025
    gamma = 0.6
    alpha = -0.3
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.3025
    gamma = 0.6
    alpha = -0.3
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.3025
    gamma = 0.6
    alpha = -0.3
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.6
    execute_on = timestep_end
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
   type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
    [./bottom_x]
      type = DirichletBC
      variable = disp_x
      boundary = bottom
      value=0.0
    [../]
    [./bottom_z]
      type = DirichletBC
      variable = disp_z
      boundary = bottom
      value=0.0
    [../]
    [./bottom_y]
      type = FunctionDirichletBC
      variable = disp_y
      boundary = bottom
      function = displacement_bc
    [../]
[]

[Materials]

  [./constant]
     type = Elastic
     block = 0
     disp_x = disp_x
     disp_y = disp_y
     disp_z = disp_z
     youngs_modulus = 1
     poissons_ratio = 0
     thermal_expansion = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1'
  [../]

[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 6.0
  dtmax = 0.1
  dtmin = 0.1
  l_tol = 1e-8
  nl_rel_tol = 1e-8
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.001 1 0.001 0.0 0.0'
    scale_factor = 7750
  [../]
  [./displacement_ic]
    type = PiecewiseLinear
    axis = y
    x = '0.0 0.3 0.4 0.5 0.6 0.7 1.0'
    y = '0.0 0.0 0.0001 1.0 0.0001 0.0 0.0'
    scale_factor = 0.1
  [../]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
    [./disp_1]
       type = NodalVariableValue
       nodeid = 1
       variable = disp_y
     [../]
    [./disp_2]
       type = NodalVariableValue
       nodeid = 3
       variable = disp_y
     [../]
    [./disp_3]
       type = NodalVariableValue
       nodeid = 10
       variable = disp_y
     [../]
    [./disp_4]
       type = NodalVariableValue
       nodeid = 14
       variable = disp_y
     [../]
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
[]

test/tests/time_steppers/iteration_adaptive/piecewise_linear.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmax = 5
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./temp_spike]
    type = PiecewiseLinear
    x = '0 1 1.1 1.2 2'
    y = '1 1 2   1   1'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = u
    boundary = left
    function = temp_spike
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = -1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  start_time = 0.0
  end_time = 2.0
  verbose = true
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.9
    optimal_iterations = 10
    timestep_limiting_function = temp_spike
    max_function_change = 0.5
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/elastic_patch/elastic_patch_rz.i

#
# This problem is taken from the Abaqus verification manual:
#   "1.5.4 Patch test for axisymmetric elements"
# The stress solution is given as:
#   xx = yy = zz = 2000
#   xy = 400
#
# Since the strain is 1e-3 in all three directions, the new density should be
#   new_density = original_density * V_0 / V
#   new_density = 0.283 / (1 + 1e-3 + 1e-3 + 1e-3) = 0.282153

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_patch_rz.e
[]

[Variables]
  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules/TensorMechanics/Master/All]
  strain = SMALL
  incremental = true
  add_variables = true
  generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
[]

[Kernels]
  [./body]
    type = BodyForce
    variable = disp_y
    value = 1
    function = '-400/x'
  [../]

  [./heat]
    type = TimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = '1e-3*x'
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = '1e-3*(x+y)'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]

  [./density]
    type = Density
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  end_time = 1.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/transfers/multiapp_nearest_node_transfer/parallel_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 180
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = ConstantIC
      value = 1.0
    [../]
  [../]
[]

[AuxVariables]
  [./pid]
    order = constant
    family = monomial
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[AuxKernels]
  [./pid]
    type = ProcessorIDAux
    variable = pid
  [../]
[]

modules/porous_flow/test/tests/flux_limited_TVD_pflow/pffltvd_3D.i

# Using flux-limited TVD advection ala Kuzmin and Turek, employing PorousFlow Kernels and UserObjects, with superbee flux-limiter
# 3D version
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  xmin = 0
  xmax = 1
  ny = 4
  ymin = 0
  ymax = 0.5
  nz = 3
  zmin = 0
  zmax = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '1 - x'
  [../]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = tracer
  [../]
  [./flux0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = advective_flux_calculator_0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = porepressure
  [../]
  [./flux1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = porepressure
    advective_flux_calculator = advective_flux_calculator_1
  [../]
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1
    boundary = left
  [../]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_component_1]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 1
    use_mobility = true
    flux_function = 1E3
  [../]
  [./remove_component_0]
    type = PorousFlowPiecewiseLinearSink
    variable = tracer
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 0
    use_mobility = true
    flux_function = 1E3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      thermal_expansion = 0
      viscosity = 1.0
      density0 = 1000.0
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure tracer'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
  [./advective_flux_calculator_0]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 0
  [../]
  [./advective_flux_calculator_1]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = tracer
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = the_simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-2 0 0   0 1E-2 0   0 0 1E-2'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0.5 2'
    num_points = 11
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 0.3
  dt = 6E-2
  nl_abs_tol = 1E-8
  timestep_tolerance = 1E-3
[]

[Outputs]
  print_linear_residuals = false
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/time_steppers/dt2/dt2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 20
  ny = 20
  elem_type = QUAD4
[]

[GlobalParams]
  slope = 1
  t_jump = 2
[]

[Functions]
  active = 'u_func'

  [./u_func]
    type = ParsedFunction
    value = 'atan((t-2)*pi)'   # atan((t-t_jump)*pi*slope) - has to match global params above

  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = TEIC
    [../]
  [../]
[]

[Kernels]
  active = 'td diff ffn'

  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = TEJumpFFN
    variable = u
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = TEJumpBC
    variable = u
    boundary = '0 1 2 3'
  [../]
[]

[Postprocessors]
  active = 'dt l2'

  [./dt]
    type = TimestepSize
  [../]

  [./l2]
    type = ElementL2Error
    variable = u
    function = u_func
  [../]
[]

[Executioner]
  type = Transient


  solve_type = 'PJFNK'

  nl_rel_tol = 1e-7
#  l_tol = 1e-5

  start_time = 0.0
  end_time = 5
  num_steps = 500000
  dtmax = 0.25

  [./TimeStepper]
    type = DT2
    dt = 0.1
    e_max = 3e-1
    e_tol = 1e-1
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  csv = true
  exodus = true
[]

test/tests/restart/restart_subapp_not_master/two_step_solve_sub_restart.i

[Mesh]
  file = two_step_solve_master_full_solve0_checkpoint_cp/0002_mesh.cpr
[]

[Problem]
  restart_file_base = two_step_solve_master_full_solve0_checkpoint_cp/LATEST
  force_restart = true
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

# Initial Condition will come from the restart file

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  end_time = 2.0
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/functions/mpf_except1.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dummy]
    type = TimeDerivative
    variable = u
  [../]
[]

[Functions]
  [./moving_planar_front]
    type = MovingPlanarFront
    start_posn = '1 1 0'
    end_posn = '1 1 0'
    active_length = 1
    distance = t
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 10
[]

[Outputs]
  file_base = mpf_except1.i
  exodus = true
[]

modules/combined/test/tests/CHSplitFlux/flux_gb.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 2
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);0.1+0.1*v'
    [../]
  [../]
  [./mu]
  [../]
  [./jx]
  [../]
  [./jy]
  [../]
[]

[AuxVariables]
  [./gb]
    family = LAGRANGE
    order  = FIRST
  [../]
  [./mobility_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./mobility_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./diffusivity_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./diffusivity_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./aniso_tensor_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./aniso_tensor_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
[]

[Kernels]
  [./conc]
    type = CHSplitConcentration
    variable = c
    mobility = mobility_prop
    chemical_potential_var = mu
  [../]
  [./chempot]
    type = CHSplitChemicalPotential
    variable = mu
    chemical_potential_prop = mu_prop
    c = c
  [../]
  [./flux_x]
    type = CHSplitFlux
    variable = jx
    component = 0
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./flux_y]
    type = CHSplitFlux
    variable = jy
    component = 1
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[AuxKernels]
  [./gb]
    type = FunctionAux
    variable = gb
    function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);v'
  [../]
  [./mobility_xx]
    type = MaterialRealTensorValueAux
    variable = mobility_xx
    property = mobility_prop
    row = 0
    column = 0
  [../]
  [./mobility_yy]
    type = MaterialRealTensorValueAux
    variable = mobility_yy
    property = mobility_prop
    row = 1
    column = 1
  [../]
  [./diffusivity_xx]
    type = MaterialRealTensorValueAux
    variable = diffusivity_xx
    property = diffusivity
    row = 0
    column = 0
  [../]
  [./diffusivity_yy]
    type = MaterialRealTensorValueAux
    variable = diffusivity_yy
    property = diffusivity
    row = 1
    column = 1
  [../]
  [./aniso_tensor_xx]
    type = MaterialRealTensorValueAux
    variable = aniso_tensor_xx
    property = aniso_tensor
    row = 0
    column = 0
  [../]
  [./aniso_tensor_yy]
    type = MaterialRealTensorValueAux
    variable = aniso_tensor_yy
    property = aniso_tensor
    row = 1
    column = 1
  [../]
[]

[Materials]
  [./chemical_potential]
    type = DerivativeParsedMaterial
    block = 0
    f_name = mu_prop
    args = c
    function = 'c'
    derivative_order = 1
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    function = 'c*(1.0-c)'
    args = c
    f_name = var_dep
    derivative_order = 1
  [../]
  [./mobility]
    type = CompositeMobilityTensor
    block = 0
    M_name = mobility_prop
    tensors = diffusivity
    weights = var_dep
    args = c
  [../]
  [./phase_normal]
    type = PhaseNormalTensor
    phase = gb
    normal_tensor_name = gb_normal
  [../]
  [./aniso_tensor]
    type = GBDependentAnisotropicTensor
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = aniso_tensor
  [../]
  [./diffusivity]
    type = GBDependentDiffusivity
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = diffusivity
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_max_its = 5
  dt = 20
  num_steps = 5
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/mass_conservation/mass08.i

# Checking that the mass postprocessor throws the correct error when a given phase index
# is too large

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./sat]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]

[ICs]
  [./pinit]
    type = ConstantIC
    value = 1
    variable = pp
  [../]
  [./satinit]
    type = FunctionIC
    function = 1-x
    variable = sat
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sat
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp sat'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = pp
    phase1_saturation = sat
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Postprocessors]
  [./comp1_total_mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = 2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

test/tests/outputs/intervals/multiple_sync_times.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./exodus_3]
    type = Exodus
    interval = 3
    file_base = multiple_sync_times_out_3
  [../]
  [./exodus_5]
    type = Exodus
    interval = 5
    file_base = multiple_sync_times_out_5
  [../]
  [./exodus_sync_0]
    type = Exodus
    sync_times = '0.45 0.525 0.6'
    sync_only = true
    file_base = multiple_sync_times_sync_0
  [../]
  [./exodus_sync_1]
    type = Exodus
    sync_times = '0.475 0.485'
    file_base = multiple_sync_times_sync_1
  [../]
[]

modules/tensor_mechanics/test/tests/beam/static/euler_small_strain_z.i

# Test for small strain Euler beam bending in z direction

# A unit load is applied at the end of a cantilever beam of length 4m.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 2.60072400269
# Shear modulus (G) = 1.0e4
# Poisson's ratio (nu) = -0.9998699638
# Shear coefficient (k) = 0.85
# Cross-section area (A) = 0.554256
# Iy = 0.0141889 = Iz
# Length = 4 m

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 2.04e6

# The small deformation analytical deflection of the beam is given by
# delta = PL^3/3EI * (1 + 3.0 / alpha) = PL^3/3EI = 5.78e-2 m

# Using 10 elements to discretize the beam element, the FEM solution is 5.766e-2 m.
# The ratio beam FEM solution and analytical solution is 0.998.

# References:
# Prathap and Bhashyam (1982), International journal for numerical methods in engineering, vol. 18, 195-210.
# Note that the force is scaled by 1e-4 compared to the reference problem.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_z2]
    type = ConstantRate
    variable = disp_z
    boundary = right
    rate = 1.0e-4
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 2.60072400269
    poissons_ratio = -0.9998699638
    shear_coefficient = 0.85
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.554256
    Ay = 0.0
    Az = 0.0
    Iy = 0.0141889
    Iz = 0.0141889
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_z
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform3.i

# Using CappedMohrCoulomb with tensile failure only
# checking for small deformation
# A single element is stretched by "ep" in the z and x directions
# This causes the return direction to be along the hypersurface sigma_I = sigma_II
# where sigma_I = (E_2222 + E_2200) * ep
# tensile_strength is set to 1Pa, smoothing_tol = 0.1Pa
# The smoothed yield function is
# yf = sigma_I + ismoother(0) - tensile_strength
#    = sigma_I + (0.5 * smoothing_tol - smoothing_tol / Pi) - tensile_strength
#    = sigma_I - 0.98183
#
# With zero Poisson's ratio, the return stress will be
# stress_00 = stress_22 = 0.98183
# with all other stress components being zero

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.25E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.25E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3
  csv = true
[]

modules/combined/test/tests/thermal_conductivity_temperature_function_test/thermal_conductivity_temperature_function_test.i

#
# This test evaluates the capability of HeatConductionMaterial to define
# thermal conductivity as a function of temperature.  The test uses the patch test
# cube mesh with a flux bc on one side and a temperature bc on the opposite side.
# The temperature bc changes as a function of time from 100 to 200.  The thermal
# conductivity is a function of temperature, with k = 1 for temps = 100-199, k = 2
# for temps _>_ 200. The flux, q = 10 is constant.  The Transient Executioner is used here
# although the interial kernel is omitted, so this is really a series of two steady-state
# solutions.
#
#                         ---------------
#                        |               |
#                        |               |
#                q    -> |       k       |  T2
#                        |               |
#             T1 = ?     |               |
#                         ---------------
#                              dx = 1
#
#
#                         q = -k dT/dx
#
#                         q = -k (T1 - T2)/dx
#
#                         T1 = (q/-k)*dx + T2
#
#                         for: T2 = 100, k = 1, q = -10
#
#                         T1 = 110
#                         --------
#
#                         for: T2 = 200, k = 2, q = -10
#
#                         T1 = 205
#                         --------
#

[Mesh]#Comment
  file = fe_patch.e
[] # Mesh

[Functions]
  [./k_func]
    type = PiecewiseLinear
    x = '100 199 200'
    y = '1   1   2'
  [../]

  [./c_func]
    type = PiecewiseLinear
    x = '100    200'
    y = '0.116  0.116'
  [../]

  [./t_func]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '100 100 200'
  [../]
[] # Functions

[Variables]

  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 100
  [../]

[] # Variables

[Kernels]

  [./heat_r]
    type = HeatConduction
    variable = temp
  [../]


[] # Kernels

[BCs]

  [./temps_function]
    type = FunctionDirichletBC
    variable = temp
    boundary = 1000
    function = t_func
  [../]

  [./flux_in]
    type = NeumannBC
    variable = temp
    boundary = 100
    value = 10
  [../]

[] # BCs

[Materials]

  [./heat]
    type = HeatConductionMaterial
    block = 1
    temp = temp
    thermal_conductivity_temperature_function = k_func
    specific_heat_temperature_function = c_func
  [../]

  [./density]
    type = Density
    block = 1
    density = 0.283
  [../]

[] # Materials


[Executioner]

  type = Transient


  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'


  line_search = 'none'


  l_max_its = 100
  l_tol = 8e-3

  nl_max_its = 15
  nl_rel_tol = 1e-4
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1
  end_time = 2
  num_steps = 2


[] # Executioner

[Outputs]
  file_base = out
  exodus = true
[] # Outputs

modules/tensor_mechanics/test/tests/global_strain/global_strain_hydrostat.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 1
    ny = 1
    nz = 1
  []
  [cnode]
    type = ExtraNodesetGenerator
    coord = '0.0 0.0 0.0'
    new_boundary = 100
    input = generated_mesh
  []
[]

[Variables]
  [./u_x]
  [../]
  [./u_y]
  [../]
  [./u_z]
  [../]
  [./global_strain]
    order = SIXTH
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = GlobalDisplacementAux
    variable = disp_x
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 1
  [../]
  [./disp_y]
    type = GlobalDisplacementAux
    variable = disp_y
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 1
  [../]
  [./disp_z]
    type = GlobalDisplacementAux
    variable = disp_z
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 2
  [../]
[]

[GlobalParams]
  displacements = 'u_x u_y u_z'
  block = 0
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[ScalarKernels]
  [./global_strain]
    type = GlobalStrain
    variable = global_strain
    global_strain_uo = global_strain_uo
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y z'
      variable = ' u_x u_y u_z'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = u_x
    value = 0
  [../]
  [./centerfix_y]
    type = DirichletBC
    boundary = 100
    variable = u_y
    value = 0
  [../]
  [./centerfix_z]
    type = DirichletBC
    boundary = 100
    variable = u_z
    value = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '70e9 0.33'
    fill_method = symmetric_isotropic_E_nu
  [../]
  [./strain]
    type = ComputeSmallStrain
    global_strain = global_strain
  [../]
  [./global_strain]
    type = ComputeGlobalStrain
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[UserObjects]
  [./global_strain_uo]
    type = GlobalStrainUserObject
    applied_stress_tensor = '-5e9 -5e9 -5e9 0 0 0'
    execute_on = 'Initial Linear Nonlinear'
  [../]
[]

[Postprocessors]
  [./l2err]
    type = ScalarL2Error
    variable = global_strain
    function = -0.02428571 #strain = E*(1-2*nu)/sigma
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  line_search = basic

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  l_max_its = 30
  nl_max_its = 12

  l_tol = 1.0e-4

  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-fb-tangential-lm-mortar-action.i

starting_point = 2e-1

# We offset slightly so we avoid the case where the bottom of the slave block and the top of the
# master block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
  scaling = 1e0
[]

[Mesh]
  [./original_file_mesh]
    type = FileMeshGenerator
    file = long-bottom-block-1elem-blocks-coarse.e
  [../]
  # These sidesets need to be deleted because the contact action adds them automatically. For this
  # particular mesh, the new IDs will be identical to the deleted ones and will conflict if we don't
  # remove the original ones.
  [./delete_3]
    type = BlockDeletionGenerator
    input = original_file_mesh
    block_id = 3
  [../]
  [./revised_file_mesh]
    type = BlockDeletionGenerator
    input = delete_3
    block_id = 4
  [../]
[]

[Variables]
  [./disp_x]
    block = '1 2'
    # order = SECOND
  [../]
  [./disp_y]
    block = '1 2'
    # order = SECOND
  [../]
[]

[Contact]
  [frictional]
    mesh = revised_file_mesh
    master = 20
    slave = 10
    formulation = mortar
    system = constraint
    model = coulomb
    friction_coefficient = 0.1
  []
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
  hide = 'contact_pressure nodal_area_frictional penetration'
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = frictional_normal_lm
    subdomain = frictional_slave_subdomain
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_1/cyl1_template2.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl1_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/porous_flow/test/tests/fluidstate/brineco2_nonisothermal.i

[Mesh]
  [./mesh]
    type = GeneratedMeshGenerator
    dim = 2
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pgas]
    initial_condition = 20e6
  [../]
  [./z]
     initial_condition = 0.2
  [../]
  [./temperature]
    initial_condition = 70
  [../]
[]

[AuxVariables]
  [./xnacl]
    initial_condition = 0.1
  [../]
  [./pressure_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./internal_energy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./internal_energy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./pressure_water]
    type = PorousFlowPropertyAux
    variable = pressure_water
    property = pressure
    phase = 0
    execute_on = timestep_end
  [../]
  [./pressure_gas]
    type = PorousFlowPropertyAux
    variable = pressure_gas
    property = pressure
    phase = 1
    execute_on = timestep_end
  [../]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation_water
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./density_water]
    type = PorousFlowPropertyAux
    variable = density_water
    property = density
    phase = 0
    execute_on = timestep_end
  [../]
  [./density_gas]
    type = PorousFlowPropertyAux
    variable = density_gas
    property = density
    phase = 1
    execute_on = timestep_end
  [../]
  [./viscosity_water]
    type = PorousFlowPropertyAux
    variable = viscosity_water
    property = viscosity
    phase = 0
    execute_on = timestep_end
  [../]
  [./viscosity_gas]
    type = PorousFlowPropertyAux
    variable = viscosity_gas
    property = viscosity
    phase = 1
    execute_on = timestep_end
  [../]
  [./enthalpy_water]
    type = PorousFlowPropertyAux
    variable = enthalpy_water
    property = enthalpy
    phase = 0
    execute_on = timestep_end
  [../]
  [./enthalpy_gas]
    type = PorousFlowPropertyAux
    variable = enthalpy_gas
    property = enthalpy
    phase = 1
    execute_on = timestep_end
  [../]
  [./internal_energy_water]
    type = PorousFlowPropertyAux
    variable = internal_energy_water
    property = internal_energy
    phase = 0
    execute_on = timestep_end
  [../]
  [./internal_energy_gas]
    type = PorousFlowPropertyAux
    variable = internal_energy_gas
    property = internal_energy
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1_water]
    type = PorousFlowPropertyAux
    variable = x1_water
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./x1_gas]
    type = PorousFlowPropertyAux
    variable = x1_gas
    property = mass_fraction
    phase = 1
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./x0_water]
    type = PorousFlowPropertyAux
    variable = x0_water
    property = mass_fraction
    phase = 0
    fluid_component = 0
    execute_on = timestep_end
  [../]
  [./x0_gas]
    type = PorousFlowPropertyAux
    variable = x0_gas
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = timestep_end
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
  [./heat]
    type = TimeDerivative
    variable = temperature
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z temperature'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    temperature = temperature
    temperature_unit = Celsius
    xnacl = xnacl
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./density_water]
    type = ElementIntegralVariablePostprocessor
    variable = density_water
  [../]
  [./density_gas]
    type = ElementIntegralVariablePostprocessor
    variable = density_gas
  [../]
  [./viscosity_water]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_water
  [../]
  [./viscosity_gas]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_gas
  [../]
  [./enthalpy_water]
    type = ElementIntegralVariablePostprocessor
    variable = enthalpy_water
  [../]
  [./enthalpy_gas]
    type = ElementIntegralVariablePostprocessor
    variable = enthalpy_gas
  [../]
  [./internal_energy_water]
    type = ElementIntegralVariablePostprocessor
    variable = internal_energy_water
  [../]
  [./internal_energy_gas]
    type = ElementIntegralVariablePostprocessor
    variable = internal_energy_gas
  [../]
  [./x1_water]
    type = ElementIntegralVariablePostprocessor
    variable = x1_water
  [../]
  [./x0_water]
    type = ElementIntegralVariablePostprocessor
    variable = x0_water
  [../]
  [./x1_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x1_gas
  [../]
  [./x0_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x0_gas
  [../]
  [./sg]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_gas
  [../]
  [./sw]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_water
  [../]
  [./pwater]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_water
  [../]
  [./pgas]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_gas
  [../]
  [./x0mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    phase = '0 1'
  [../]
  [./x1mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = '0 1'
  [../]
[]

[Outputs]
  csv = true
  execute_on = timestep_end
[]

modules/richards/test/tests/gravity_head_1/gh16.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    preset = false
    value = -1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh16
  exodus = true
[]

test/tests/multiapps/reset/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/phase_field/test/tests/rigidbodymotion/polycrystal_action.i

# test file for showing reaction forces between particles
[GlobalParams]
  var_name_base = eta
  op_num = 2
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 5
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 1
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./PolycrystalVariables]
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    args = 'eta0 eta1'
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = 'eta0 eta1'
    grain_force = grain_force
    grain_tracker_object = grain_center
    grain_volumes = grain_volumes
  [../]
  [./RigidBodyMultiKernel]
    # Creates all of the necessary Allen Cahn kernels automatically
    c = c
    f_name = F
    mob_name = M
    kappa_name = kappa_eta
    grain_force = grain_force
    grain_tracker_object = grain_center
    grain_volumes = grain_volumes
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '1.0  0.5      0.5'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'c eta0 eta1'
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+eta0*(1-eta0)*c+eta1*(1-eta1)*c
    derivative_order = 2
  [../]
  [./force_density]
    type = ForceDensityMaterial
    c = c
    etas ='eta0 eta1'
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  [./MultiAuxVariables]
    order = CONSTANT
    family = MONOMIAL
    variable_base = 'df'
    data_type = 'RealGradient'
    grain_num = 2
  [../]
  [./vadvx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vadvy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./centroids]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    var_name_base = eta
    op_num = 2
    v = 'eta0 eta1'
  [../]
  [./MaterialVectorGradAuxKernel]
    variable_base = 'df'
    grain_num = 2
    property = 'force_density'
  [../]
  [./vadv_x]
    type = GrainAdvectionAux
    component = x
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
    variable = vadvx
  [../]
  [./vadv_y]
    type = GrainAdvectionAux
    component = y
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
    variable = vadvy
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_center
    field_display = UNIQUE_REGION
    execute_on = timestep_begin
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_center
    field_display = VARIABLE_COLORING
    execute_on = timestep_begin
  [../]
  [./centroids]
    type = FeatureFloodCountAux
    variable = centroids
    execute_on = timestep_begin
    field_display = CENTROID
    flood_counter = grain_center
  [../]
[]

[ICs]
  [./ic_eta0]
    int_width = 1.0
    x1 = 20.0
    y1 = 0.0
    radius = 14.0
    outvalue = 0.0
    variable = eta0
    invalue = 1.0
    type = SmoothCircleIC
  [../]
  [./IC_eta1]
    int_width = 1.0
    x1 = 30.0
    y1 = 25.0
    radius = 14.0
    outvalue = 0.0
    variable = eta1
    invalue = 1.0
    type = SmoothCircleIC
  [../]
  [./ic_c]
    type = SpecifiedSmoothCircleIC
    invalue = 1.0
    outvalue = 0.1
    int_width = 1.0
    x_positions = '20.0 30.0 '
    z_positions = '0.0 0.0 '
    y_positions = '0.0 25.0 '
    radii = '14.0 14.0'
    3D_spheres = false
    variable = c
    block = 0
  [../]
[]

[VectorPostprocessors]
  [./forces]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force]
    type = ComputeGrainForceAndTorque
    execute_on = 'initial linear nonlinear'
    grain_data = grain_center
    force_density = force_density
    c = c
    etas = 'eta0 eta1'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/combined/test/tests/grain_texture/grain_texture_test_1.i

# This simulation predicts GB migration of 8 grains and outputs grain texture information
# Mesh adaptivity is not used so that the VectorPostprocessor's output will be uniform
# Time step adaptivity is used
# An AuxVariable is used to calculate the grain boundary locations

[Mesh]
  # Mesh block.  Meshes can be read in or automatically generated
  type = GeneratedMesh
  dim = 2 # Problem dimension
  nx = 10 # Number of elements in the x-direction
  ny = 10 # Number of elements in the y-direction
  xmin = 0 # minimum x-coordinate of the mesh
  xmax = 100 # maximum x-coordinate of the mesh
  ymin = 0 # minimum y-coordinate of the mesh
  ymax = 100 # maximum y-coordinate of the mesh
  elem_type = QUAD4 # Type of elements used in the mesh
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = 3 # Number of order parameters used
  var_name_base = gr # Base name of grains
  grain_num = 3 #Number of grains
[]

[Variables]
  # Variable block, where all variables in the simulation are declared
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./euler_angle_file]
    type = EulerAngleFileReader
    file_name = grn_3_rand_2D.tex
  [../]
  [./grain_tracker]
    type = FauxGrainTracker
    outputs = none
  [../]
  [./voronoi]
    type = PolycrystalVoronoi
    coloring_algorithm = bt
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  # Dependent variables
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  # Kernel block, where the kernels defining the residual equations are set up.
  [./PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  [../]
[]

[AuxKernels]
  # AuxKernel block, defining the equations used to calculate the auxvars
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    execute_on = timestep_end
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
[]

[Materials]
  [./CuGrGr]
    # Material properties
    type = GBEvolution # Quantitative material properties for copper grain growth.  Dimensions are nm and ns
    block = 0 # Block ID (only one block in this problem)
    GBmob0 = 2.5e-6 #Mobility prefactor for Cu from Schonfelder 1997
    GBenergy = 0.708 # GB energy in J/m^2
    Q = 0.23 #Activation energy for grain growth from Schonfelder 1997
    T = 450 # K   #Constant temperature of the simulation (for mobility calculation)
    wGB = 14 # nm    #Width of the diffuse GB
  [../]
[]

[VectorPostprocessors]
  [./textureInfo]
    type = GrainTextureVectorPostprocessor
    unique_grains = unique_grains
    euler_angle_provider = euler_angle_file
    sort_by = id # sort output by elem id
  [../]
[]

[Executioner]
  type = Transient # Type of executioner, here it is transient with an adaptive time step
  scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  l_max_its = 30 # Max number of linear iterations
  l_tol = 1e-4 # Relative tolerance for linear solves
  nl_max_its = 40 # Max number of nonlinear iterations
  nl_abs_tol = 1e-11 # Relative tolerance for nonlinear solves
  nl_rel_tol = 1e-10 # Absolute tolerance for nonlinear solves
  start_time = 0.0
  num_steps = 1
[]

[Outputs]
  execute_on = 'TIMESTEP_END'
  csv = true
[]

modules/richards/test/tests/jacobian_1/jn_fu_20.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true
# piecewiselinearflux = true, with fully_upwind = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
  fully_upwind = true
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 1
    [../]
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = 'left right'
    pressures = '-0.9 0.9'
    bare_fluxes = '1E6 2E6'  # can not make too high as finite difference constant state bums out due to precision loss
    use_mobility = false
    use_relperm = false
    variable = pressure
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn_fu_20
  exodus = false
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_4/cyl4_template1_sm.i

[Mesh]
  file = cyl4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/tensor_mechanics/test/tests/generalized_plane_strain/generalized_plane_strain_small.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = square.e
[]

[Variables]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    displacements = 'disp_x disp_y'
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy strain_zz'
    planar_formulation = GENERALIZED_PLANE_STRAIN
    eigenstrain_names = eigenstrain
    scalar_out_of_plane_strain = scalar_strain_zz
    temperature = temp
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/peridynamics/test/tests/jacobian_check/2D_mechanics_OSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = ORDINARY_STATE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.0
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialOSPD
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1
[]

test/tests/multiapps/picard_catch_up/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = 'v'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 'left'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 'right'
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_abs_tol = 1e-14
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = 'sub.i'
    max_catch_up_steps = 100
    max_failures = 100
    catch_up = true
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

modules/tensor_mechanics/test/tests/2D_different_planes/gps_xz.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = square_xz_plane.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_z]
  [../]
  [./scalar_strain_yy]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./generalized_plane_strain]
    block = 1
    strain = SMALL
    scalar_out_of_plane_strain = scalar_strain_yy
    out_of_plane_direction = y
    planar_formulation = GENERALIZED_PLANE_STRAIN
    eigenstrain_names = 'eigenstrain'
    generate_output = 'stress_xx stress_xz stress_yy stress_zz strain_xx strain_xz strain_yy strain_zz'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 3
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_stress]
    type = ComputeLinearElasticStress
    block = 1
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Postprocessors]
  [./react_y]
    type = MaterialTensorIntegral
    use_displaced_mesh = false
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-10

# controls for nonlinear iterations
  nl_max_its = 10
  nl_rel_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  file_base = gps_xz_small_out
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/automatic_patch_update/sliding_update.i

[Mesh]
  file = sliding_update.e
  displacements = 'disp_x disp_y'
  patch_size = 5
  patch_update_strategy = 'iteration'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+4
    model = frictionless
    formulation = penalty
  [../]
[]

[Executioner]
   type = Transient
   solve_type = 'PJFNK'
   start_time = 0
   end_time = 10.0
   l_tol = 1e-8
   nl_rel_tol = 1e-6
   nl_abs_tol = 1e-4
   dt = 2.0
   line_search = 'none'
   petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
   petsc_options_value = 'lu superlu_dist'
   timestep_tolerance = 1e-1
[]

[BCs]
  [./fixed_1_2x]
    type = DirichletBC
    boundary = '1'
    value = 0.0
    variable = disp_x
  [../]
  [./fixed_1_2y]
    type = DirichletBC
    boundary = '1'
    value = 0.0
    variable = disp_y
  [../]
  [./sliding_1]
    type = FunctionDirichletBC
    function = sliding_fn
    variable = disp_x
    boundary = '4'
  [../]
  [./normal_y]
    type = DirichletBC
    variable = disp_y
    boundary = '4'
    value = -0.01
  [../]
#  [./Pressure]
#    [./normal_pressure]
#      disp_x = disp_x
#      disp_y = disp_y
#      factor = 100.0
#      boundary = 4
#    [../]
#  [../]
[]

[Functions]
  [./sliding_fn]
    type = ParsedFunction
    value = 't'
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

test/tests/outputs/postprocessor_final/postprocessor_final.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[VectorPostprocessors]
  [./vpp]
    type = LineValueSampler
    variable = u
    start_point = '0 0 0'
    end_point = '1 1 0'
    outputs = test
    num_points = 10
    sort_by = id
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./test]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/transfers/multiapp_copy_transfer/linear_lagrange_to_sub/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = sub.i
    execute_on = timestep_end
  [../]
[]

[Transfers]
  [./to_sub]
    type = MultiAppCopyTransfer
    direction = to_multiapp
    source_variable = u
    variable = u
    multi_app = sub
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/png/adv_diff_reaction_transient_test.i

[Mesh]
  dim              = 2
  file             = Mesh12.e
[]

[Variables]
  active = 'phi'

  [./phi]
    order  = SECOND
    family = LAGRANGE
  [../]

[]

[Kernels]

  active = 'trans advection diffusion source'

  [./trans]
    type     = TimeDerivative
    variable = phi
  [../]

  [./advection]
    type     = Advection0
    variable = phi
    Au       = 10.
    Bu       = -6.
    Cu       =  5.
    Av       = 10.
    Bv       =  8.
    Cv       = -1.
  [../]

  [./diffusion]
    type     = Diffusion0
    variable = phi
    Ak       = 10.
    Bk       = 0.1
    Ck       = 0.1
  [../]

  [./source]
    type     = ForcingFunctionXYZ0
    variable = phi
    omega0   = 2.
    A0       = 1.
    B0       = 1.2
    C0       = 0.8
    Au       = 10.
    Bu       = -6.
    Cu       =  5.
    Av       = 10.
    Bv       =  8.
    Cv       = -1.
    Ak       = 10.
    Bk       = 0.1
    Ck       = 0.1
  [../]

[]

[BCs]

  active = 'btm_sca rgt_sca top_sca lft_sca'

  [./btm_sca]
    type     = DirichletBCfuncXYZ0
    variable = phi
    boundary = 1
    omega0   = 2.
    A0       = 1.
    B0       = 1.2
    C0       = 0.8
  [../]

  [./rgt_sca]
    type     = DirichletBCfuncXYZ0
    variable = phi
    boundary = 2
    omega0   = 2.
    A0       = 1.
    B0       = 1.2
    C0       = 0.8
  [../]

  [./top_sca]
    type     = DirichletBCfuncXYZ0
    variable = phi
    boundary = 3
    omega0   = 2.
    A0       = 1.
    B0       = 1.2
    C0       = 0.8
  [../]

  [./lft_sca]
    type     = DirichletBCfuncXYZ0
    variable = phi
    boundary = 4
    omega0   = 2.
    A0       = 1.
    B0       = 1.2
    C0       = 0.8
  [../]

[]

[Executioner]
  type                 = Transient #Steady
  scheme               = bdf2
  nl_rel_tol           = 1e-10

  solve_type = 'PJFNK'

  petsc_options_iname  = '-pc_factor_levels -pc_factor_mat_ordering_type'
  petsc_options_value  = '20 rcm'

  start_time      = 0.0
  end_time        = 1.
  num_steps       = 60000
  dt              = .2
  n_startup_steps = 0
[]

[Outputs]
  [png]
    type = PNGOutput
    resolution = 1
    color = RWB
  []
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update18_cosserat.i

# Cosserat version of Capped Mohr Columb (using StressUpdate)
# Compressive failure only, starting from a non-symmetric stress state, and
# using softening

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0
    internal_limit = 2E-3
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 3E3
    poisson = 0.2
    layer_thickness = 1.0
    joint_normal_stiffness = 1.0E3
    joint_shear_stiffness = 2.0E3
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-2 1 -0.5  -1 -1.9 0  -0.5 0 -3'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombCosseratStressUpdate
    host_youngs_modulus = 3E3
    host_poissons_ratio = 0.2
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform_cosserat2.i

# Plastic deformation.  Layered Cosserat with parameters:
# Young = 1.0
# Poisson = 0.2
# layer_thickness = 0.1
# joint_normal_stiffness = 0.25
# joint_shear_stiffness = 0.2
# These give the following nonzero components of the elasticity tensor:
# E_0000 = E_1111 = 1.043195
# E_0011 = E_1100 = 0.260799
# E_2222 = 0.02445
# E_0022 = E_1122 = E_2200 = E_2211 = 0.006112
# G = E_0101 = E_0110 = E_1001 = E_1010 = 0.416667
# Gt = E_0202 = E_0220 = E_2002 = E_1212 = E_1221 = E_2112 = 0.019084
# E_2020 = E_2121 = 0.217875
# They give the following nonzero components of the bending rigidity tensor:
# D = 8.68056E-5
# B_0101 = B_1010 = 7.92021E-4
# B_0110 = B_1001 = -1.584E-4
#
# Applying the following deformation to the zmax surface of a unit cube:
# disp_x = 8*t
# disp_y = 6*t
# disp_z = -t
# omega_x = omega_y = omega_z = 0
# yields the following strains:
# strain_xz = 8*t
# strain_yz = 6*t
# strain_zz = -t
# and all other components, and the curvature, are zero.
# The nonzero components of stress are therefore:
# stress_xx = stress_yy = -0.006112*t
# stress_xz = stress_zx = 0.152671*t
# stress_yz = stress_zy = 0.114504*t
# stress_zz = -0.0244499*t
# The moment stress is zero.
# So q = 0.19084*t and p = -0.0244*t.
#
# With large cohesion, but compressive strength = 0.0244499, the
# system is elastic up to t=1.  After that time
# stress_zz = -0.0244499 (for t>=1)
# and
# stress_xx = stress_yy = -0.006112 (for t>=1), since the
# elastic trial increment is exactly canelled by the Poisson's
# contribution from the return to the yield surface.
# The plastic strains are zero for t<=1, but for larger times:
# plastic_strain_zz = - (t - 1)  (for t>=1)
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 8*t
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 6*t
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = -t
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yx
    index_i = 1
    index_j = 0
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zx
    index_i = 2
    index_j = 0
  [../]
  [./strainp_zy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zy
    index_i = 2
    index_j = 1
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
  [./straint_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xx
    index_i = 0
    index_j = 0
  [../]
  [./straint_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xy
    index_i = 0
    index_j = 1
  [../]
  [./straint_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xz
    index_i = 0
    index_j = 2
  [../]
  [./straint_yx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yx
    index_i = 1
    index_j = 0
  [../]
  [./straint_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yy
    index_i = 1
    index_j = 1
  [../]
  [./straint_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yz
    index_i = 1
    index_j = 2
  [../]
  [./straint_zx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zx
    index_i = 2
    index_j = 0
  [../]
  [./straint_zy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zy
    index_i = 2
    index_j = 1
  [../]
  [./straint_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zz
    index_i = 2
    index_j = 2
  [../]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yx]
    type = PointValue
    point = '0 0 0'
    variable = stress_yx
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zx]
    type = PointValue
    point = '0 0 0'
    variable = stress_zx
  [../]
  [./s_zy]
    type = PointValue
    point = '0 0 0'
    variable = stress_zy
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./c_s_xx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xx
  [../]
  [./c_s_xy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xy
  [../]
  [./c_s_xz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xz
  [../]
  [./c_s_yx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yx
  [../]
  [./c_s_yy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yy
  [../]
  [./c_s_yz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yz
  [../]
  [./c_s_zx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zx
  [../]
  [./c_s_zy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zy
  [../]
  [./c_s_zz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xz
  [../]
  [./strainp_yx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yx
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yz
  [../]
  [./strainp_zx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zx
  [../]
  [./strainp_zy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zy
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = straint_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = straint_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = straint_xz
  [../]
  [./straint_yx]
    type = PointValue
    point = '0 0 0'
    variable = straint_yx
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = straint_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = straint_yz
  [../]
  [./straint_zx]
    type = PointValue
    point = '0 0 0'
    variable = straint_zx
  [../]
  [./straint_zy]
    type = PointValue
    point = '0 0 0'
    variable = straint_zy
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = straint_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 30
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 40
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 0.024449878
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1.0
    poisson = 0.2
    layer_thickness = 0.1
    joint_normal_stiffness = 0.25
    joint_shear_stiffness = 0.2
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
  [../]
  [./admissible]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneCosseratStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  nl_abs_tol = 1E-14
  end_time = 3
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform_cosserat2
  csv = true
[]

test/tests/outputs/output_on/postprocessors.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./sum]
    type = PerfGraphData
    section_name = "Root"
    data_type = total
    execute_on = 'initial nonlinear timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = false
  [./console]
    type = Console
    execute_postprocessors_on = 'initial nonlinear timestep_end'
  [../]
[]

modules/phase_field/examples/kim-kim-suzuki/kks_example_ternary.i

#
# KKS ternary (3 chemical component) system example in the split form
# We track c1 and c2 only, since c1 + c2 + c3 = 1
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 150
  ny = 15
  nz = 0
  xmin = -25
  xmax = 25
  ymin = -2.5
  ymax = 2.5
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[AuxVariables]
  [./Fglobal]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Variables]
  # order parameter
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]

  # solute 1 concentration
  [./c1]
    order = FIRST
    family = LAGRANGE
  [../]

  # solute 2 concentration
  [./c2]
    order = FIRST
    family = LAGRANGE
  [../]


  # chemical potential solute 1
  [./w1]
    order = FIRST
    family = LAGRANGE
  [../]

  # chemical potential solute 2
  [./w2]
    order = FIRST
    family = LAGRANGE
  [../]


  # Liquid phase solute 1 concentration
  [./c1l]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.1
  [../]

  # Liquid phase solute 2 concentration
  [./c2l]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.05
  [../]

  # Solid phase solute 1 concentration
  [./c1s]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.8
  [../]

  # Solid phase solute 2 concentration
  [./c2s]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.1
  [../]

[]

[Functions]
  [./ic_func_eta]
    type = ParsedFunction
    value = '0.5*(1.0-tanh((x)/sqrt(2.0)))'
  [../]
  [./ic_func_c1]
    type = ParsedFunction
    value = '0.8*(0.5*(1.0-tanh(x/sqrt(2.0))))^3*(6*(0.5*(1.0-tanh(x/sqrt(2.0))))^2-15*(0.5*(1.0-tanh(x/sqrt(2.0))))+10)+0.1*(1-(0.5*(1.0-tanh(x/sqrt(2.0))))^3*(6*(0.5*(1.0-tanh(x/sqrt(2.0))))^2-15*(0.5*(1.0-tanh(x/sqrt(2.0))))+10))'
  [../]
  [./ic_func_c2]
    type = ParsedFunction
    value = '0.1*(0.5*(1.0-tanh(x/sqrt(2.0))))^3*(6*(0.5*(1.0-tanh(x/sqrt(2.0))))^2-15*(0.5*(1.0-tanh(x/sqrt(2.0))))+10)+0.05*(1-(0.5*(1.0-tanh(x/sqrt(2.0))))^3*(6*(0.5*(1.0-tanh(x/sqrt(2.0))))^2-15*(0.5*(1.0-tanh(x/sqrt(2.0))))+10))'
  [../]

[]


[ICs]
  [./eta]
    variable = eta
    type = FunctionIC
    function = ic_func_eta
  [../]
  [./c1]
    variable = c1
    type = FunctionIC
    function = ic_func_c1
  [../]
  [./c2]
    variable = c2
    type = FunctionIC
    function = ic_func_c2
  [../]

[]

[Materials]
  # Free energy of the liquid
  [./fl]
    type = DerivativeParsedMaterial
    f_name = fl
    args = 'c1l c2l'
    function = '(0.1-c1l)^2+(0.05-c2l)^2'
  [../]

  # Free energy of the solid
  [./fs]
    type = DerivativeParsedMaterial
    f_name = fs
    args = 'c1s c2s'
    function = '(0.8-c1s)^2+(0.1-c2s)^2'
  [../]

  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'M   L   eps_sq'
    prop_values = '0.7 0.7 1.0  '
  [../]
[]

[Kernels]
  # enforce c1 = (1-h(eta))*c1l + h(eta)*c1s
  [./PhaseConc1]
    type = KKSPhaseConcentration
    ca       = c1l
    variable = c1s
    c        = c1
    eta      = eta
  [../]

  # enforce c2 = (1-h(eta))*c2l + h(eta)*c2s
  [./PhaseConc2]
    type = KKSPhaseConcentration
    ca       = c2l
    variable = c2s
    c        = c2
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotSolute1]
    type = KKSPhaseChemicalPotential
    variable = c1l
    cb       = c1s
    fa_name  = fl
    fb_name  = fs
    args_a   = 'c2l'
    args_b   = 'c2s'
  [../]
  [./ChemPotSolute2]
    type = KKSPhaseChemicalPotential
    variable = c2l
    cb       = c2s
    fa_name  = fl
    fb_name  = fs
    args_a   = 'c1l'
    args_b   = 'c1s'

  [../]

  #
  # Cahn-Hilliard Equations
  #
  [./CHBulk1]
    type = KKSSplitCHCRes
    variable = c1
    ca       = c1l
    fa_name  = fl
    w        = w1
    args_a   = 'c2l'
  [../]
  [./CHBulk2]
    type = KKSSplitCHCRes
    variable = c2
    ca       = c2l
    fa_name  = fl
    w        = w2
    args_a   = 'c1l'
  [../]

  [./dc1dt]
    type = CoupledTimeDerivative
    variable = w1
    v = c1
  [../]
  [./dc2dt]
    type = CoupledTimeDerivative
    variable = w2
    v = c2
  [../]

  [./w1kernel]
    type = SplitCHWRes
    mob_name = M
    variable = w1
  [../]
  [./w2kernel]
    type = SplitCHWRes
    mob_name = M
    variable = w2
  [../]


  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = fl
    fb_name  = fs
    w        = 1.0
    args = 'c1l c1s c2l c2s'
  [../]
  [./ACBulkC1]
    type = KKSACBulkC
    variable = eta
    ca       = c1l
    cb       = c1s
    fa_name  = fl
    args     = 'c2l'
  [../]
  [./ACBulkC2]
    type = KKSACBulkC
    variable = eta
    ca       = c2l
    cb       = c2s
    fa_name  = fl
    args     = 'c1l'
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = eps_sq
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[AuxKernels]
  [./GlobalFreeEnergy]
    variable = Fglobal
    type = KKSGlobalFreeEnergy
    fa_name = fl
    fb_name = fs
    w = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type'
  petsc_options_value = 'asm      ilu          nonzero'

  l_max_its = 100
  nl_max_its = 100

  num_steps = 50
  dt = 0.1
[]

#
# Precondition using handcoded off-diagonal terms
#
[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/sub_cycling_failure/sub_gold.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Functions]
  [./dts]
    # These mimic the behavior of the failing solve
    type = PiecewiseConstant
    x = '0     0.1    0.105'
    y = '0.01  0.005  0.01'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.01

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update23_cosserat.i

# Cosserat version of Capped Mohr Columb (using StressUpdate)
# Tensile + shear failure, starting from a symmetric stress state

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 4E1
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 2.0
    joint_shear_stiffness = 1.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '10 12 -14.9  12 5 20  -14 20 8'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombCosseratStressUpdate
    host_youngs_modulus = 1
    host_poissons_ratio = 0.25
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/multi/three_surface07.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 1.5E-6m in y direction and 0.8E-6 in z direction.
# trial stress_yy = 1.5 and stress_zz = 0.8
#
# Then SimpleTester1 and SimpleTester2 should activate and the algorithm will return to
# the corner stress_yy=1.0, stress_zz=0.5
# internal1 should be 0.2, and internal2 should be 0.3

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1.5E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.8E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface07
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/xfem/test/tests/corner_nodes_cut/sm/corner_node_cut_twice.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '-0.0 0.3 1.0 0.7'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[BCs]
  [./top_x]
    type = DirichletBC
    boundary = 2
    variable = disp_x
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.1
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = -0.1
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-9

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/gravity/gravity_rz.i

# Gravity Test
#
# This test is designed to exercise the gravity body force rz kernel.
#
# The mesh for this problem is a rectangle 10 units by 1 unit.
#
# The boundary conditions for this problem are as follows.  The
#   displacement is zero at the top.  The acceleration of gravity is 20.
#
# The material has a Young's modulus of 1e6 and a density of 2.
#
# The analytic solution for the displacement along the bar is:
#
# u(y) = -b*y^2/(2*E)+b*L*y/E
#
# The displacement at y=L is b*L^2/(2*E) = 2*20*10*10/(2*1e6) = 0.002.
#
# The analytic solution for the stress along the bar assuming linear
#   elasticity is:
#
# S(y) = b*(L-y)
#
# The stress at x=0 is b*L = 2*20*10 = 400.
#
# Note:  The simulation does not measure stress at y=0.  The stress
#   is reported at element centers.  The element closest to y=0 sits
#   at y = 1/4 and has a stress of 390.  This matches the linear
#   stress distribution that is expected.  The same situation applies
#   at y = L where the stress is zero analytically.  The nearest
#   element is at y=9.75 where the stress is 10.
#
[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = gravity_rz_test.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master/All]
  volumetric_locking_correction = true
  strain = FINITE
  add_variables = true
  generate_output = 'stress_xx stress_yy stress_xy'
[]

[Kernels]
  [./gravity]
    type = Gravity
    variable = disp_y
    value = 20
  [../]
[]

[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    shear_modulus = 0.5e6
    lambda = 0.0
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./density]
    type = Density
    density = 2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  file_base = gravity_rz_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/check_error/youngs_modulus.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = -1e6
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/outputs/variables/output_vars_nonexistent.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD9
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]

  # ODE variables
  [./x]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
  [./y]
    family = SCALAR
    order = FIRST
    initial_condition = 2
  [../]
[]

[AuxVariables]
  [./elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./elemental_restricted]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./nodal]
    order = FIRST
    family = LAGRANGE
  [../]

  [./nodal_restricted]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./conv_u]
    type = CoupledForce
    variable = u
    v = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[AuxKernels]
  [./elemental]
    type = ConstantAux
    variable = elemental
    value = 1
  [../]

  [./elemental_restricted]
    type = ConstantAux
    variable = elemental_restricted
    value = 1
  [../]

  [./nodal]
    type = ConstantAux
    variable = elemental
    value = 2
  [../]

  [./nodal_restricted]
    type = ConstantAux
    variable = elemental_restricted
    value = 2
  [../]
[]

[ScalarKernels]
  [./td1]
    type = ODETimeDerivative
    variable = x
  [../]
  [./ode1]
    type = ImplicitODEx
    variable = x
    y = y
  [../]

  [./td2]
    type = ODETimeDerivative
    variable = y
  [../]
  [./ode2]
    type = ImplicitODEy
    variable = y
    x = x
  [../]
[]

[BCs]
  active = 'left_u right_u left_v'

  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 9
  [../]

  [./left_v]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 5
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 2
  [../]
[]

[Postprocessors]
  [./x]
    type = ScalarVariable
    variable = x
    execute_on = timestep_end
  [../]
  [./y]
    type = ScalarVariable
    variable = y
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  dt = 0.01
  num_steps = 10
[]

[Outputs]
  file_base = out_nonexistent
  exodus = true
  show = 'u elemental nodal x foo1 foo2'
[]

modules/combined/test/tests/nodal_area/nodal_area_Hex20_sm.i

[Mesh]
  file = nodal_area_Hex20.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'displ_x displ_y displ_z'
[]

[Functions]
  [./disp]
    type = PiecewiseLinear
    x = '0     1'
    y = '0  20e-6'
  [../]
[]

[Variables]
  [./displ_x]
  [../]
  [./displ_y]
  [../]
  [./displ_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./react_x]
  [../]
  [./react_y]
  [../]
  [./react_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = displ_x
    disp_y = displ_y
    disp_z = displ_z
    save_in_disp_x = react_x
    save_in_disp_y = react_y
    save_in_disp_z = react_z
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
[]

[BCs]
  [./move_right]
    type = FunctionDirichletBC
    boundary = '1'
    variable = displ_x
    function = disp
  [../]

  [./fixed_x]
    type = DirichletBC
    boundary = '3 4'
    variable = displ_x
    value = 0
  [../]

  [./fixed_y]
    type = DirichletBC
    boundary = 10
    variable = displ_y
    value = 0
  [../]

  [./fixed_z]
    type = DirichletBC
    boundary = 11
    variable = displ_z
    value = 0
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e7
    tangential_tolerance = 1e-5
    system = Constraint
  [../]
[]

[Materials]
  [./dummy]
    type = Elastic
    block = '1 2'

    disp_x = displ_x
    disp_y = displ_y
    disp_z = displ_z

    youngs_modulus = 1e6
    poissons_ratio = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'
  nl_rel_tol = 1e-9
  l_tol = 1e-4
  l_max_its = 40

  start_time = 0.0
  dt = 1.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./react_x]
    type = NodalSum
    variable = react_x
    boundary = 1
    execute_on = 'initial timestep_end'
  [../]
  [./total_area]
    type = NodalSum
    variable = nodal_area_dummy_name
    boundary = 2
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/level_set/test/tests/transfers/markers/single_level/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./marker]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Problem]
  type = LevelSetReinitializationProblem
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    execute_on = FINAL
  [../]
[]

test/tests/transfers/multiapp_postprocessor_interpolation_transfer/radial_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_sub]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    positions = '0.2 0.2 0 0.7 0.7 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = 'sub0.i sub1.i'
  [../]
[]

[Transfers]
  [./pp_transfer]
    direction = from_multiapp
    postprocessor = average
    variable = from_sub
    type = MultiAppPostprocessorInterpolationTransfer
    multi_app = sub
    interp_type = radial_basis
    radius = 1.5
  [../]
[]

test/tests/auxkernels/solution_aux/solution_aux_exodus_file_extension.i

[Mesh]
  file = cubesource.e
  # The SolutionUserObject uses the copy_nodal_solution() capability
  # of the Exodus reader, and therefore won't work if the initial mesh
  # has been renumbered (it will be reunumbered if you are running with
  # DistributedMesh in parallel).  Hence, we restrict this test to run with
  # ReplicatedMesh only.
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
  [./en]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./nn]
    type = SolutionAux
    solution = soln
    variable = nn
    scale_factor = 2.0
  [../]
  [./en]
    type = SolutionAux
    solution = soln
    variable = en
    scale_factor = 2.0
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = cubesource.e-s003
    system_variables = source_nodal
    timestep = 2
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]

[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 50
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

python/chigger/tests/simple/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    use_problem_dimension = false
  [../]
[]

modules/heat_conduction/test/tests/gray_lambert_radiator/gray_lambert_cavity_automatic_vf_3D.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 2
  zmin = 0
  zmax = 3
  nx = 4
  ny = 4
  nz = 4
[]

[Problem]
  kernel_coverage_check = false
[]

[Variables]
  [./temperature]
    initial_condition = 300
  [../]
[]

[UserObjects]
  [./gray_lambert]
    type = ViewFactorObjectSurfaceRadiation
    boundary = 'bottom top left right front back'
    fixed_temperature_boundary = 'bottom top'
    fixed_boundary_temperatures = '550 300'
    adiabatic_boundary = 'right left front back'
    emissivity = '1 0.75 0.75 0.75 0.75 0.75'
    temperature = temperature
    view_factor_object_name = view_factor
  [../]

  [./view_factor]
    type = UnobstructedPlanarViewFactor
    boundary = 'bottom top left right front back'
    normalize_view_factor = true
    execute_on = 'INITIAL'
  [../]
[]

[Postprocessors]
  [./heat_flux_density_bottom]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = HEAT_FLUX_DENSITY
    boundary = bottom
  [../]

  [./temperature_left]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = TEMPERATURE
    boundary = left
  [../]

  [./temperature_right]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = TEMPERATURE
    boundary = right
  [../]

  [./brightness_top]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = RADIOSITY
    boundary = top
  [../]

  [./brightness_front]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = RADIOSITY
    boundary = front
  [../]

  [./brightness_back]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = RADIOSITY
    boundary = back
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/single_pnt_2d/single_point_2d_frictional_sm.i

[Mesh]
  file = single_point_2d.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./appl_disp]
    type = PiecewiseLinear
    x = '0 0.001  0.101'
    y = '0 0.0   -0.10'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
  [../]
[]

[AuxKernels]
  [./incslip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./incslip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = appl_disp
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = -0.002001
  [../]
[]

[Materials]
  [./bottom]
    type = Elastic
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e9
    formulation = NonlinearPlaneStrain
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    formulation = NonlinearPlaneStrain
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./disp_x]
    type = NodalVariableValue
    nodeid = 5
    variable = disp_x
  [../]
  [./disp_y]
    type = NodalVariableValue
    nodeid = 5
    variable = disp_y
  [../]
  [./inc_slip_x]
    type = NodalVariableValue
    nodeid = 5
    variable = inc_slip_x
  [../]
  [./inc_slip_y]
    type = NodalVariableValue
    nodeid = 5
    variable = inc_slip_y
  [../]
  [./accum_slip_x]
    type = NodalVariableValue
    nodeid = 5
    variable = accum_slip_x
  [../]
  [./accum_slip_y]
    type = NodalVariableValue
    nodeid = 5
    variable = accum_slip_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu    superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 200
  dt = 0.001
  end_time = 0.001
  num_steps = 10000
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-8
  dtmin = 0.001
  l_tol = 1e-3
[]

[Outputs]
  file_base = single_point_2d_out_frictional_0_2_kin
  exodus = true
  print_linear_residuals = true
  perf_graph = true
  csv = true
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = coulomb
    system = constraint
    formulation = kinematic
    penalty = 1e12
    normalize_penalty = true
    friction_coefficient = '0.2'
    tangential_tolerance = 1e-3
  [../]
[]

 [Dampers]
   [./contact_slip]
     type = ContactSlipDamper
     master = '2'
     slave = '3'
   [../]
 []

modules/xfem/test/tests/moving_interface/verification/2D_rz_lsdep1mat.i

# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality:                                         2D
# Coordinate System:                                      rz
# Material Numbers/Types: level set dep 1 material, 2 region
# Element Order:                                         1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
#   Transient 2D heat transfer problem in cylindrical coordinates designed with
#   the Method of Manufactured Solutions. This problem was developed to verify
#   XFEM performance on linear elements in the presence of a moving interface
#   sweeping across the x-y coordinates of a system with thermal conductivity
#   dependent upon the transient level set function. This problem can be
#   exactly evaluated by FEM/Moose without the moving interface. Both the
#   temperature and level set function are designed to be linear to attempt to
#   minimize the error between the Moose/exact solution and XFEM results.
# Results:
#   The temperature at the bottom left boundary (x=1, y=1) exhibits the largest
#   difference between the FEM/Moose solution and XFEM results. We present the
#   XFEM results at this location with 10 digits of precision:
#     Time   Expected Temperature   XFEM Calculated Temperature
#      0.2                 440        440
#      0.4                 480        479.9998717
#      0.6                 520        519.9994963
#      0.8                 560        559.9989217
#      1.0                 600        599.9986735
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  xmin = 1.0
  xmax = 2.0
  ymin = 1.0
  ymax = 2.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = moment_fitting
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
    heal_always = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
    [../]
[]

[Kernels]
  [./heat_cond]
    type = MatDiffusion
    variable = u
    diffusivity = diffusion_coefficient
  [../]
  [./vol_heat_src]
    type = BodyForce
    variable = u
    function = src_func
  [../]
  [./mat_time_deriv]
    type = TestMatTimeDerivative
    variable = u
    mat_prop_value = rhoCp
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    geometric_cut_userobject = 'level_set_cut_uo'
    use_penalty = true
    alpha = 1e5
  [../]
[]

[Functions]
  [./src_func]
    type = ParsedFunction
    value = '10*(-100*x-100*y+400) + t*(-2.5*y/(2.04*x) + 155/x - t/(2.04*x)
            - 7.5/2.04)'
  [../]
  [./neumann_func]
    type = ParsedFunction
    value = '((0.01/2.04)*(-2.5*x-2.5*y-t)+1.55)*100*t'
  [../]
  [./dirichlet_right_func]
    type = ParsedFunction
    value = '(-100*y+200)*t+400'
  [../]
  [./dirichlet_top_func]
    type = ParsedFunction
    value = '(-100*x+200)*t+400'
  [../]
  [./k_func]
    type = ParsedFunction
    value = '(0.01/2.04)*(-2.5*x-2.5*y-t) + 1.55'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = '-0.5*(x+y) + 2.04 -0.2*t'
  [../]
[]

[Materials]
  [./mat_time_deriv_prop]
    type = GenericConstantMaterial
    prop_names = 'rhoCp'
    prop_values = 10
  [../]
  [./therm_cond_prop]
    type = GenericFunctionMaterial
    prop_names = 'diffusion_coefficient'
    prop_values = 'k_func'
  [../]
[]

[BCs]
  [./left_du]
    type = FunctionNeumannBC
    variable = u
    boundary = 'left'
    function = neumann_func
  [../]
  [./right_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 'right'
    function = dirichlet_right_func
  [../]
  [./bottom_du]
    type = FunctionNeumannBC
    variable = u
    boundary = 'bottom'
    function = neumann_func
  [../]
  [./top_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 'top'
    function = dirichlet_top_func
  [../]
[]

[ICs]
  [./u_ic]
    type = ConstantIC
    value = 400
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_tol = 1.0e-6
  nl_max_its = 15
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-9

  start_time = 0.0
  dt = 0.2
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = 'initial timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/outputs/csv_final_and_latest/final.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.25
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

# Vector Postprocessor System
[VectorPostprocessors]
  [./line_sample]
    type = LineValueSampler
    execute_on = 'timestep_end final'
    variable = 'u'
    start_point = '0 0.5 0'
    end_point = '1 0.5 0'
    num_points = 11
    sort_by = id
  [../]
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = 'TIMESTEP_END FINAL'
    create_final_symlink = true
  [../]
[]

modules/phase_field/test/tests/MultiPhase/derivativetwophasematerial.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 14
  ny = 10
  nz = 0
  xmin = 10
  xmax = 40
  ymin = 15
  ymax = 35
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 25.0
      y1 = 25.0
      radius = 6.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 3.0
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 30.0
      y1 = 25.0
      radius = 4.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 2.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
  [./ACBulk]
    type = AllenCahn
    variable = eta
    args = c
    f_name = F
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = kappa_eta
  [../]

  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    args = 'eta'
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'L kappa_eta'
    prop_values = '1 1        '
  [../]
  [./consts2]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1 1'
  [../]

  [./switching]
    type = SwitchingFunctionMaterial
    eta = eta
    h_order = SIMPLE
  [../]
  [./barrier]
    type = BarrierFunctionMaterial
    eta = eta
    g_order = SIMPLE
  [../]

  [./free_energy_A]
    type = DerivativeParsedMaterial
    f_name = Fa
    args = 'c'
    function = '(c-0.1)^2*(c-1)^2 + c*0.01'
    derivative_order = 2
    enable_jit = true
  [../]
  [./free_energy_B]
    type = DerivativeParsedMaterial
    f_name = Fb
    args = 'c'
    function = 'c^2*(c-0.9)^2 + (1-c)*0.01'
    derivative_order = 2
    enable_jit = true
  [../]

  [./free_energy]
    type = DerivativeTwoPhaseMaterial
    f_name = F
    fa_name = Fa
    fb_name = Fb
    args = 'c'
    eta = eta
    derivative_order = 2
    outputs = exodus
    output_properties = 'F dF/dc dF/deta d^2F/dc^2 d^2F/dcdeta d^2F/deta^2'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/initial_conditions/MultiSmoothSuperellipsoidIC_2D.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  nz = 0
  xmax = 100
  ymax = 100
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./c]
    type = MultiSmoothSuperellipsoidIC
    variable = c
    invalue = 1.0
    outvalue = 0.1
    bubspac = '10 5'
    numbub = '5 5'
    semiaxis_b_variation = '0.25 0.35'
    semiaxis_variation_type = uniform
    semiaxis_a_variation = '0.2 0.3'
    semiaxis_a = '7 5'
    semiaxis_b = '10 8'
    exponent = '2 3'
    prevent_overlap = true
    semiaxis_c_variation = '0 0'
    semiaxis_c = '1 1'
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 31 ds'
  l_max_its = 20
  l_tol = 1e-4
  nl_max_its = 20
  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-11
  start_time = 0.0
  num_steps = 1
  dt = 100.0
  enable = false
  [./Adaptivity]
    refine_fraction = .5
  [../]
[]

[Outputs]
  exodus = true
[]

[Problem]
  type = FEProblem
  solve = false
[]

test/tests/mesh_modifiers/subdomain_bounding_box/subdomain_bounding_box_outside.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 1
  ymax = 1
  uniform_refine = 2
[]

[MeshModifiers]
  [./subdomains]
    type = SubdomainBoundingBox
    bottom_left = '0.1 0.1 0'
    block_id = 1
    top_right = '0.9 0.9 0'
    location = OUTSIDE
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = MatCoefDiffusion
    variable = u
    conductivity = 'k'
    block = '0 1'
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./outside]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'k'
    prop_values = 1
  [../]
  [./inside]
    type = GenericConstantMaterial
    block = 1
    prop_names = 'k'
    prop_values = 0.1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/1D_axisymmetric/axisymmetric_gps_finite.i

#
# This test checks the generalized plane strain using finite strain formulation.
# since we constrain all the nodes against movement and the applied thermal strain
# is very small, the results are the same as small and incremental small strain formulations
#

[GlobalParams]
  displacements = disp_x
  scalar_out_of_plane_strain = scalar_strain_yy
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = lines.e
[]

[Variables]
  [./disp_x]
  [../]
  [./temp]
    initial_condition = 580.0
  [../]
  [./scalar_strain_yy]
    order = FIRST
    family = SCALAR
  [../]
[]

[Functions]
  [./temp100]
    type = PiecewiseLinear
    x = '0   1'
    y = '580 680'
  [../]
  [./temp300]
    type = PiecewiseLinear
    x = '0   1'
    y = '580 880'
  [../]
[]

[Kernels]
  [./heat]
    type = Diffusion
    variable = temp
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./gps]
        planar_formulation = GENERALIZED_PLANE_STRAIN
        scalar_out_of_plane_strain = scalar_strain_yy
        strain = FINITE
        generate_output = 'strain_xx strain_yy strain_zz stress_xx stress_yy stress_zz'
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    boundary = 1000
    value = 0
    variable = disp_x
  [../]
  [./temp100]
    type = FunctionDirichletBC
    variable = temp
    function = temp100
    boundary = 2
  [../]
  [./temp300]
    type = FunctionDirichletBC
    variable = temp
    function = temp300
    boundary = 3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 3600
    poissons_ratio = 0.2
  [../]

  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-8
    temperature = temp
    stress_free_temperature = 580
    eigenstrain_name = eigenstrain
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_max_its = 50
  l_tol = 1e-08
  nl_max_its = 15
  nl_abs_tol = 1e-10
  start_time = 0
  end_time = 1
  num_steps = 1
[]

[Outputs]
  exodus = true
  console = true
[]

test/tests/time_integrators/implicit-euler/ie.i

###########################################################
# This is a simple test with a time-dependent problem
# demonstrating the use of the TimeIntegrator system.
#
# Testing a solution that is second order in space
# and first order in time
#
# @Requirement F1.30
###########################################################

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD9
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    value = ((x*x)+(y*y))-(4*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  # Test of the TimeIntegrator System
  scheme = 'implicit-euler'

  start_time = 0.0
  num_steps = 5
  dt = 0.25
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/cp_user_object/orthotropic_rotation_Cijkl.i

# This test is designed to test the correct application of the Euler angle
# rotations to the elasticity tensor. The test uses values for the nine C_ijkl
# entries that correspond to the engineering notation placement:
#  e.g. C11 = 11e3, c12 = 12e3, c13 = 13e3, c22 = 22e3 ..... c66 = 66e3
#
# A rotation of (0, 90, 0) is applied to the 1x1x1 cube, such that the values of
# c12 and c13 switch, c22 and c33 switch, and c55 and c66 switch. Postprocessors
# are used to verify this switch (made simple with the value convention above)
# and to verify that the unrotated components along the x-axis remain constant.

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./lage_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./lage_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pk2_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./lage_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c12]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c13]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c23]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c33]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c44]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c55]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c66]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
  [../]
[]

[AuxKernels]
  [./lage_xx]
    type = RankTwoAux
    rank_two_tensor = lage
    variable = lage_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./lage_yy]
    type = RankTwoAux
    rank_two_tensor = lage
    variable = lage_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./pk2_yy]
    type = RankTwoAux
    variable = pk2_yy
    rank_two_tensor = pk2
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./lage_zz]
    type = RankTwoAux
    rank_two_tensor = lage
    variable = lage_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./fp_yy]
    type = RankTwoAux
    variable = fp_yy
    rank_two_tensor = fp
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./c11]
    type = RankFourAux
    variable = c11
    rank_four_tensor = elasticity_tensor
    index_i = 0
    index_j = 0
    index_k = 0
    index_l = 0
    execute_on = timestep_end
  [../]
  [./c12]
    type = RankFourAux
    variable = c12
    rank_four_tensor = elasticity_tensor
    index_i = 0
    index_j = 0
    index_k = 1
    index_l = 1
    execute_on = timestep_end
  [../]
  [./c13]
    type = RankFourAux
    variable = c13
    rank_four_tensor = elasticity_tensor
    index_i = 0
    index_j = 0
    index_k = 2
    index_l = 2
    execute_on = timestep_end
  [../]
  [./c22]
    type = RankFourAux
    variable = c22
    rank_four_tensor = elasticity_tensor
    index_i = 1
    index_j = 1
    index_k = 1
    index_l = 1
    execute_on = timestep_end
  [../]
  [./c23]
    type = RankFourAux
    variable = c23
    rank_four_tensor = elasticity_tensor
    index_i = 1
    index_j = 1
    index_k = 2
    index_l = 2
    execute_on = timestep_end
  [../]
  [./c33]
    type = RankFourAux
    variable = c33
    rank_four_tensor = elasticity_tensor
    index_i = 2
    index_j = 2
    index_k = 2
    index_l = 2
    execute_on = timestep_end
  [../]
  [./c44]
    type = RankFourAux
    variable = c44
    rank_four_tensor = elasticity_tensor
    index_i = 1
    index_j = 2
    index_k = 1
    index_l = 2
    execute_on = timestep_end
  [../]
  [./c55]
    type = RankFourAux
    variable = c55
    rank_four_tensor = elasticity_tensor
    index_i = 2
    index_j = 0
    index_k = 2
    index_l = 0
    execute_on = timestep_end
  [../]
  [./c66]
    type = RankFourAux
    variable = c66
    rank_four_tensor = elasticity_tensor
    index_i = 0
    index_j = 1
    index_k = 0
    index_l = 1
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainUObasedCP
    stol = 1e-2
    tan_mod_type = exact
    uo_slip_rates = 'slip_rate_gss'
    uo_slip_resistances = 'slip_resistance_gss'
    uo_state_vars = 'state_var_gss'
    uo_state_var_evol_rate_comps = 'state_var_evol_rate_comp_gss'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    C_ijkl = '11e3 12e3 13e3 22e3 23e3 33e3 44e3 55e3 66e3'
    fill_method = symmetric9
    euler_angle_1 = 0.0
    euler_angle_2 = 90.0
    euler_angle_3 = 0.0
  [../]
[]

[UserObjects]
  [./slip_rate_gss]
    type = CrystalPlasticitySlipRateGSS
    variable_size = 12
    slip_sys_file_name = input_slip_sys.txt
    num_slip_sys_flowrate_props = 2
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    uo_state_var_name = state_var_gss
  [../]
  [./slip_resistance_gss]
    type = CrystalPlasticitySlipResistanceGSS
    variable_size = 12
    uo_state_var_name = state_var_gss
  [../]
  [./state_var_gss]
    type = CrystalPlasticityStateVariable
    variable_size = 12
    groups = '0 4 8 12'
    group_values = '60.8e3 60.8e3 60.8e3'
    uo_state_var_evol_rate_comp_name = state_var_evol_rate_comp_gss
    scale_factor = 1.0
  [../]
  [./state_var_evol_rate_comp_gss]
    type = CrystalPlasticityStateVarRateComponentGSS
    variable_size = 12
    hprops = '1.0 541.5 109.8 2.5'
    uo_slip_rate_name = slip_rate_gss
    uo_state_var_name = state_var_gss
  [../]
[]

[Postprocessors]
  [./lage_xx]
    type = ElementAverageValue
    variable = lage_xx
  [../]
  [./pk2_yy]
    type = ElementAverageValue
    variable = pk2_yy
  [../]
  [./lage_yy]
    type = ElementAverageValue
    variable = lage_yy
  [../]
  [./lage_zz]
    type = ElementAverageValue
    variable = lage_zz
  [../]
  [./fp_yy]
    type = ElementAverageValue
    variable = fp_yy
  [../]
  [./c11]
    type = ElementAverageValue
    variable = c11
  [../]
  [./c12]
    type = ElementAverageValue
    variable = c12
  [../]
  [./c13]
    type = ElementAverageValue
    variable = c13
  [../]
  [./c22]
    type = ElementAverageValue
    variable = c22
  [../]
  [./c23]
    type = ElementAverageValue
    variable = c23
  [../]
  [./c33]
    type = ElementAverageValue
    variable = c33
  [../]
  [./c44]
    type = ElementAverageValue
    variable = c44
  [../]
  [./c55]
    type = ElementAverageValue
    variable = c55
  [../]
  [./c66]
    type = ElementAverageValue
    variable = c66
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  l_tol = 1e-3
  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      1              lu            gmres     200'
  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-10

  dtmax = 0.1
  dtmin = 1.0e-3
  dt = 0.05
  end_time = 0.5
[]

[Outputs]
  exodus = false
  csv = true
[]

modules/tensor_mechanics/test/tests/multi/special_joint1.i

# Plasticity models:
# WeakPlaneTensile with strength = 1000Pa
# WeakPlaneShear with cohesion = 0.1MPa and friction angle = 25
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  volumetric_locking_correction=true
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./linesearch]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ld]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./constr_added]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./linesearch]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = linesearch
  [../]
  [./ld]
    type = MaterialRealAux
    property = plastic_linear_dependence_encountered
    variable = ld
  [../]
  [./constr_added]
    type = MaterialRealAux
    property = plastic_constraints_added
    variable = constr_added
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./max_iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./av_linesearch]
    type = ElementAverageValue
    variable = linesearch
    outputs = 'console csv'
  [../]
  [./av_ld]
    type = ElementAverageValue
    variable = ld
    outputs = 'console csv'
  [../]
  [./av_constr_added]
    type = ElementAverageValue
    variable = constr_added
    outputs = 'console csv'
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console csv'
  [../]
[]

[UserObjects]
  [./wpt_str]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = wpt_str
    yield_function_tolerance = 1.0
    internal_constraint_tolerance = 1.0E-7
  [../]

  [./wps_c]
    type = TensorMechanicsHardeningConstant
    value = 1.0E5
  [../]
  [./wps_tan_phi]
    type = TensorMechanicsHardeningConstant
    value = 0.466
  [../]
  [./wps_tan_psi]
    type = TensorMechanicsHardeningConstant
    value = 0.087
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = wps_c
    tan_friction_angle = wps_tan_phi
    tan_dilation_angle = wps_tan_psi
    smoother = 0
    yield_function_tolerance = 1.0
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1.0E9 1.3E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-7

    plastic_models = 'wpt wps'
    max_NR_iterations = 5
    specialIC = 'joint'
    deactivation_scheme = 'safe'
    min_stepsize = 1
    max_stepsize_for_dumb = 1

    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1 1'
    debug_jac_at_intnl = '1 1 1 1'
    debug_stress_change = 1E1
    debug_pm_change = '1E-6 1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = special_joint1
  exodus = false
  csv = true
[]

modules/heat_conduction/test/tests/recover/recover.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = recover_in.e
[]

[Variables]
  [./temp]
    initial_condition = 580.0
  [../]
[]

[AuxVariables]
  [./gap_cond]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./heat_source]
    type = BodyForce
    variable = temp
    block = pellet_type_1
    value = 1e3
    function = 't'
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 5
    slave = 10
    quadrature = true
  [../]
[]

[BCs]
  [./outside]
    type = DirichletBC
    value = 580
    boundary = '1 2 3'
    variable = temp
  [../]
  [./edge]
    type = DirichletBC
    value = 700
    boundary = 10
    variable = temp
  [../]
[]

[Materials]
  [./thermal_3]
    type = HeatConductionMaterial
    block = 3
    thermal_conductivity = 5
    specific_heat = 12
  [../]
  [./thermal_1]
    type = HeatConductionMaterial
    block = 1
    thermal_conductivity = 16.0
    specific_heat = 330.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = ' lu       superlu_dist'

  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-11

  start_time = -200
  n_startup_steps = 1
  end_time = 1.02e5
  num_steps = 10

  dtmax = 2e6
  dtmin = 1

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 2.0e2
    optimal_iterations = 15
    iteration_window = 2
  [../]

  [./Quadrature]
    order = FIFTH
    side_order = SEVENTH
  [../]
[]

[Postprocessors]
  [./ave_temp_interior]
     type = SideAverageValue
     boundary = 9
     variable = temp
     execute_on = 'initial linear'
  [../]
  [./avg_clad_temp]
    type = SideAverageValue
    boundary = 7
    variable = temp
    execute_on = 'initial timestep_end'
  [../]
  [./flux_from_clad]
    type = SideFluxIntegral
    variable = temp
    boundary = 5
    diffusivity = thermal_conductivity
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/eigenstrain/variable_finite.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 0.5
  ymax = 0.5
  elem_type = QUAD4
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./strain11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./c]
  [../]
  [./eigenstrain00]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[ICs]
  [./c_IC]
    int_width = 0.15
    x1 = 0
    y1 = 0
    radius = 0.25
    outvalue = 0
    variable = c
    invalue = 1
    type = SmoothCircleIC
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[AuxKernels]
  [./strain11]
    type = RankTwoAux
    rank_two_tensor = mechanical_strain
    index_i = 0
    index_j = 0
    variable = strain11
  [../]
  [./stress11]
    type = RankTwoAux
    rank_two_tensor = mechanical_strain
    index_i = 1
    index_j = 1
    variable = stress11
  [../]
  [./eigenstrain00]
    type = RankTwoAux
    variable = eigenstrain00
    rank_two_tensor = eigenstrain
    index_j = 0
    index_i = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '1 1'
    fill_method = symmetric_isotropic
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    function = 0.01*c^2
    args = c
    outputs = exodus
    output_properties = 'var_dep'
    f_name = var_dep
    enable_jit = true
    derivative_order = 2
  [../]
  [./eigenstrain]
    type = ComputeVariableEigenstrain
    block = 0
    eigen_base = '1 1 1 0 0 0'
    args = c
    prefactor = var_dep
    eigenstrain_name = eigenstrain
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y'
    eigenstrain_names = eigenstrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]

[BCs]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 0.0005*t
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  solve_type = PJFNK
  petsc_options_iname = '-pc_type '
  petsc_options_value = lu
  l_max_its = 20
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-9
  reset_dt = true
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/functions/parsed/scalar.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./scalar]
    family = SCALAR
    initial_condition = 0
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxScalarKernels]
  [./scalar_aux]
    type = FunctionScalarAux
    variable = scalar
    function = func
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = u
    boundary = left
    function = left_bc
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Functions]
  [./left_bc]
    type = ParsedFunction
    value = s
    vals = scalar
    vars = s
  [../]
  [./func]
    type = ParsedFunction
    value = t
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/postprocessor_final/execute_pps_on_final.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./pp1]
    type = ElementAverageValue
    variable = u
  [../]

  [./pp2]
    type = ElementExtremeValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = CSV
    execute_postprocessors_on = final
    show = 'pp1'
  [../]
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest7.i

# 2D, removal of a union of disjoint pieces
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  xmin = 0
  xmax = 4
  ymin = 0
  ymax = 4
[]

[MeshModifiers]
  [./SubdomainBoundingBox1]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '1 1 1'
  [../]
  [./SubdomainBoundingBox2]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '2 2 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeleter
    block_id = 1
    depends_on = 'SubdomainBoundingBox1 SubdomainBoundingBox2'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/poro_mechanics/mandel.i

# Mandel's problem of consolodation of a drained medium
#
# A sample is in plane strain.
# -a <= x <= a
# -b <= y <= b
# It is squashed with constant force by impermeable, frictionless plattens on its top and bottom surfaces (at y=+/-b)
# Fluid is allowed to leak out from its sides (at x=+/-a)
# The porepressure within the sample is monitored.
#
# As is common in the literature, this is simulated by
# considering the quarter-sample, 0<=x<=a and 0<=y<=b, with
# impermeable, roller BCs at x=0 and y=0 and y=b.
# Porepressure is fixed at zero on x=a.
# Porepressure and displacement are initialised to zero.
# Then the top (y=b) is moved downwards with prescribed velocity,
# so that the total force that is inducing this downwards velocity
# is fixed.  The velocity is worked out by solving Mandel's problem
# analytically, and the total force is monitored in the simulation
# to check that it indeed remains constant.
#
# Here are the problem's parameters, and their values:
# Soil width.  a = 1
# Soil height.  b = 0.1
# Soil's Lame lambda.  la = 0.5
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = G = 0.75
# Soil bulk modulus.  K = la + 2*mu/3 = 1
# Drained Poisson ratio.  nu = (3K - 2G)/(6K + 2G) = 0.2
# Soil bulk compliance.  1/K = 1
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Biot modulus.  M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 4.705882
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.694118
# Undrained Poisson ratio.  nuu = (3Ku - 2G)/(6Ku + 2G) = 0.372627
# Skempton coefficient.  B = alpha*M/Ku = 1.048035
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Consolidation coefficient.  c = 2*k*B^2*G*(1-nu)*(1+nuu)^2/9/(1-nuu)/(nuu-nu) = 3.821656
# Normal stress on top.  F = 1
#
# The solution for porepressure and displacements is given in
# AHD Cheng and E Detournay "A direct boundary element method for plane strain poroelasticity" International Journal of Numerical and Analytical Methods in Geomechanics 12 (1988) 551-572.
# The solution involves complicated infinite series, so I shall not write it here

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 0.1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./roller_xmin]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left'
  [../]
  [./roller_ymin]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom'
  [../]
  [./plane_strain]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
  [./xmax_drained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = right
  [../]
  [./top_velocity]
    type = FunctionDirichletBC
    variable = disp_y
    function = top_velocity
    boundary = top
  [../]
[]

[Functions]
  [./top_velocity]
    type = PiecewiseLinear
    x = '0 0.002 0.006   0.014   0.03    0.046   0.062   0.078   0.094   0.11    0.126   0.142   0.158   0.174   0.19 0.206 0.222 0.238 0.254 0.27 0.286 0.302 0.318 0.334 0.35 0.366 0.382 0.398 0.414 0.43 0.446 0.462 0.478 0.494 0.51 0.526 0.542 0.558 0.574 0.59 0.606 0.622 0.638 0.654 0.67 0.686 0.702'
    y = '-0.041824842    -0.042730269    -0.043412712    -0.04428867     -0.045509181    -0.04645965     -0.047268246 -0.047974749      -0.048597109     -0.0491467  -0.049632388     -0.050061697      -0.050441198     -0.050776675     -0.051073238      -0.0513354 -0.051567152      -0.051772022     -0.051953128 -0.052113227 -0.052254754 -0.052379865 -0.052490464 -0.052588233 -0.052674662 -0.052751065 -0.052818606 -0.052878312 -0.052931093 -0.052977751 -0.053018997 -0.053055459 -0.053087691 -0.053116185 -0.053141373 -0.05316364 -0.053183324 -0.053200724 -0.053216106 -0.053229704 -0.053241725 -0.053252351 -0.053261745 -0.053270049 -0.053277389 -0.053283879 -0.053289615'
  [../]
[]


[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_force]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./tot_force]
    type = ParsedAux
    args = 'stress_yy porepressure'
    execute_on = timestep_end
    variable = tot_force
    function = '-stress_yy+0.6*porepressure'
  [../]
[]



[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
    [./poro_x]
    type = PoroMechanicsCoupling
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PoroMechanicsCoupling
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PoroMechanicsCoupling
    variable = disp_z
    component = 2
  [../]
  [./poro_timederiv]
    type = PoroFullSatTimeDerivative
    variable = porepressure
  [../]
  [./darcy_flow]
    type = CoefDiffusion
    variable = porepressure
    coef = 1.5
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./poro_material]
    type = PoroFullSatMaterial
    porosity0 = 0.1
    biot_coefficient = 0.6
    solid_bulk_compliance = 1
    fluid_bulk_compliance = 0.125
    constant_porosity = true
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0.0 0 0'
    variable = porepressure
  [../]
  [./p1]
    type = PointValue
    outputs = csv
    point = '0.1 0 0'
    variable = porepressure
  [../]
  [./p2]
    type = PointValue
    outputs = csv
    point = '0.2 0 0'
    variable = porepressure
  [../]
  [./p3]
    type = PointValue
    outputs = csv
    point = '0.3 0 0'
    variable = porepressure
  [../]
  [./p4]
    type = PointValue
    outputs = csv
    point = '0.4 0 0'
    variable = porepressure
  [../]
  [./p5]
    type = PointValue
    outputs = csv
    point = '0.5 0 0'
    variable = porepressure
  [../]
  [./p6]
    type = PointValue
    outputs = csv
    point = '0.6 0 0'
    variable = porepressure
  [../]
  [./p7]
    type = PointValue
    outputs = csv
    point = '0.7 0 0'
    variable = porepressure
  [../]
  [./p8]
    type = PointValue
    outputs = csv
    point = '0.8 0 0'
    variable = porepressure
  [../]
  [./p9]
    type = PointValue
    outputs = csv
    point = '0.9 0 0'
    variable = porepressure
  [../]
  [./p99]
    type = PointValue
    outputs = csv
    point = '1 0 0'
    variable = porepressure
  [../]
  [./xdisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_x
  [../]
  [./ydisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_y
  [../]
  [./total_downwards_force]
     type = ElementAverageValue
     outputs = csv
     variable = tot_force
  [../]
  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.15*t<0.01,0.15*t,0.01)
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 0.7
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.001
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mandel
  [./csv]
    interval = 3
    type = CSV
  [../]
[]

test/tests/outputs/csv_final_and_latest/latest.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.25
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

# Vector Postprocessor System
[VectorPostprocessors]
  [./line_sample]
    type = LineValueSampler
    execute_on = 'timestep_end'
    variable = 'u'
    start_point = '0 0.5 0'
    end_point = '1 0.5 0'
    num_points = 11
    sort_by = id
  [../]
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = 'TIMESTEP_END'
    create_latest_symlink = true
  [../]
[]

test/tests/functions/function_file_format/function_file_format_test.i

# This tests the capability of the code to read input files in csv or space separated format.
# There are four variables and four functions of the same name; a,b,c, and d.  The diffusion equation is "solved"
# for each of these variables with a boundary condition of type FunctionDirchletBC applied to a boundary
# (i.e. node set) that includes every node in the element, so the solution is the boundary condition defined by the function.
#  Each boundary condition uses a function of type PiecewiseLinear that gets its value from a file,
# which could be in comma separated or space separated format.  The input file can also contain comments.
#
# The files could have the form
# 0,1,2,3 # time
# 0,4,5,6 # bc value
# for format = row
# or
# 0,0
# 1,4
# 2,5
# 3,6
# for format = column
# Values in files could be separated by white space.  See the .csv and .dat files for format examples.
#
# The value of the variables should correspond to the function.
# At time = 0, the variable = 0, at time = 1, variable = 4 and so on.
[Mesh]
  file = cube.e
  # This problem only has 1 element, so using DistributedMesh in parallel
  # isn't really an option, and we don't care that much about DistributedMesh
  # in serial.
  parallel_type = replicated
[]

[Variables]

  [./a]
  [../]

  [./b]
  [../]

  [./c]
  [../]

  [./d]
  [../]

  [./e]
  [../]

  [./f]
  [../]

[]

[Functions]


  [./a]
    type = PiecewiseLinear
    data_file = rows.csv
    format = rows
  [../]
  [./b]
    type = PiecewiseLinear
    data_file = columns.csv
    format = columns
  [../]
  [./c]
    type = PiecewiseLinear
    data_file = rows_space.dat
    format = rows
  [../]
  [./d]
    type = PiecewiseLinear
    data_file = columns_space.dat
    format = columns
  [../]
  [./e_func]
    type = PiecewiseLinear
    data_file = rows_more_data.csv
    format = rows
    xy_in_file_only = false
    x_index_in_file = 2
    y_index_in_file = 0
  [../]
  [./f]
    type = PiecewiseLinear
    data_file = columns_more_data.csv
    format = columns
    xy_in_file_only = false
    x_index_in_file = 2
    y_index_in_file = 0
  [../]


[]

[Kernels]

  [./diffa]
    type = Diffusion
    variable = a
  [../]
  [./diffb]
    type = Diffusion
    variable = b
  [../]
  [./diffc]
    type = Diffusion
    variable = c
  [../]
  [./diffd]
    type = Diffusion
    variable = d
  [../]
  [./diffe]
    type = Diffusion
    variable = e
  [../]
  [./difff]
    type = Diffusion
    variable = f
  [../]

[]

[BCs]

  [./a]
    type = FunctionDirichletBC
    variable = a
    boundary = '1'
    function = a
  [../]
  [./b]
    type = FunctionDirichletBC
    variable = b
    boundary = '1'
    function = b
  [../]
  [./c]
    type = FunctionDirichletBC
    variable = c
    boundary = '1'
    function = c
  [../]
  [./d]
    type = FunctionDirichletBC
    variable = d
    boundary = '1'
    function = d
  [../]
  [./e]
    type = FunctionDirichletBC
    variable = e
    boundary = '1'
    function = e_func
  [../]
  [./f]
    type = FunctionDirichletBC
    variable = f
    boundary = '1'
    function = f
  [../]

[]

[Executioner]
  type = Transient
  dt = 0.5
  end_time = 3
  nl_rel_tol = 1e-12
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/transfers/multiapp_interpolation_transfer/fromsub_master.i

###########################################################
# This is a test of the Transfer System. This test
# uses the Multiapp System to solve independent problems
# related geometrically. Solutions are then interpolated
# and transferred from a non-aligned domain.
#
# @Requirement F7.20
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  displacements = 'disp_x disp_y'
  # The MultiAppInterpolationTransfer object only works with ReplicatedMesh
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_sub]
  [../]
  [./elemental_from_sub]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./radial_from_sub]
  [../]
  [./radial_elemental_from_sub]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./disp_x]
    initial_condition = 0.2
  [../]
  [./disp_y]
  [../]
  [./displaced_target_from_sub]
  [../]
  [./displaced_source_from_sub]
  [../]
  [./nodal_from_sub_elemental]
  [../]
  [./elemental_from_sub_elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0 0.6 0 0'
    input_files = fromsub_sub.i
  [../]
[]

[Transfers]
  [./fromsub]
    type = MultiAppInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = from_sub
  [../]
  [./elemental_fromsub]
    type = MultiAppInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = elemental_from_sub
  [../]
  [./radial_fromsub]
    type = MultiAppInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = radial_from_sub
    interp_type = radial_basis
  [../]
  [./radial_elemental_fromsub]
    type = MultiAppInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = radial_elemental_from_sub
    interp_type = radial_basis
  [../]
  [./displaced_target_fromsub]
    type = MultiAppInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = displaced_target_from_sub
    displaced_target_mesh = true
  [../]
  [./displaced_source_fromsub]
    type = MultiAppInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = displaced_source_from_sub
    displaced_source_mesh = true
  [../]
  [./elemental_from_sub_elemental]
    type = MultiAppInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = elemental
    variable = elemental_from_sub_elemental
  [../]
  [./nodal_from_sub_elemental]
    type = MultiAppInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = elemental
    variable = nodal_from_sub_elemental
  [../]
[]

modules/combined/test/tests/solid_mechanics/pressure/sm/pressure_test_sm.i

#
# Pressure Test
#
# This test is designed to compute pressure loads on three faces of a unit cube.
#
# The mesh is composed of one block with a single element.  Symmetry bcs are
#   applied to the faces opposite the pressures.  Poisson's ratio is zero,
#   which makes it trivial to check displacements.
#

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  volumetric_locking_correction = false
[../]

[Mesh]#Comment
  file = pressure_test.e
  displacements = 'disp_x disp_y disp_z'
[] # Mesh

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1.0
  [../]
  [./zeroRamp]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 0. 1.'
    scale_factor = 2.0
  [../]
  [./rampUnramp]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 0.'
    scale_factor = 10.0
  [../]
[] # Functions

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

[] # Variables

[SolidMechanics]

  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    use_displaced_mesh = false
  [../]

[] # SolidMechanics

[BCs]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 5
    value = 0.0
  [../]

  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 1
      function = rampConstant
    [../]
    [./Side2]
      boundary = 2
      function = zeroRamp
    [../]
    [./Side3]
      boundary = 3
      function = rampUnramp
    [../]
  [../]

[] # BCs

[Materials]

  [./stiffStuff]
    type = LinearIsotropicMaterial
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.0
    thermal_expansion = 1e-5
  [../]

[] # Materials

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'




  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[] # Executioner

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

modules/porous_flow/test/tests/gravity/grav02a.i

# Checking that gravity head is established in the transient situation when 0<saturation<1 (note the strictly less-than).
# 2phase (PP), 2components, vanGenuchten, constant fluid bulk-moduli for each phase, constant viscosity, constant permeability, Corey relative perm
# For better agreement with the analytical solution (ana_pp), just increase nx

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = -1
  xmax = 0
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
    initial_condition = -1.0
  [../]
  [./ppgas]
    initial_condition = 0
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]


[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
    gravity = '-1 0 0'
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = ppgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = ppgas
    gravity = '-1 0 0'
  [../]
[]


[Functions]
  [./ana_ppwater]
    type = ParsedFunction
    vars = 'g B p0 rho0'
    vals = '1 2 pp_water_top 1'
    value = '-B*log(exp(-p0/B)+g*rho0*x/B)' # expected pp at base
  [../]
  [./ana_ppgas]
    type = ParsedFunction
    vars = 'g B p0 rho0'
    vals = '1 1 pp_gas_top 0.1'
    value = '-B*log(exp(-p0/B)+g*rho0*x/B)' # expected pp at base
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2
      density0 = 1
      viscosity = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.1
      viscosity = 0.5
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0  0 2 0  0 0 3'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 1
  [../]
[]

[Postprocessors]
  [./pp_water_top]
    type = PointValue
    variable = ppwater
    point = '0 0 0'
  [../]
  [./pp_water_base]
    type = PointValue
    variable = ppwater
    point = '-1 0 0'
  [../]
  [./pp_water_analytical]
    type = FunctionValuePostprocessor
    function = ana_ppwater
    point = '-1 0 0'
  [../]
  [./pp_gas_top]
    type = PointValue
    variable = ppgas
    point = '0 0 0'
  [../]
  [./pp_gas_base]
    type = PointValue
    variable = ppgas
    point = '-1 0 0'
  [../]
  [./pp_gas_analytical]
    type = FunctionValuePostprocessor
    function = ana_ppgas
    point = '-1 0 0'
  [../]
  [./mass_ph0]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./mass_ph1]
    type = PorousFlowFluidMass
    fluid_component = 1
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 1.0
  nl_rel_tol = 1E-10
  nl_abs_tol = 1E-12
[]

[Outputs]
  [./csv]
    type = CSV
    file_base = grav02a
    execute_on = 'initial final'
  [../]
[]

modules/combined/test/tests/solid_mechanics/HHT_time_integrator/one_element_b_0_3025_g_0_6_cubic.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = one_element.e
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

[]

[AuxVariables]
  [./vel_x]
  [../]
  [./vel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_x]
  [../]
  [./accel_y]
  [../]
  [./accel_z]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  []
[]

[Kernels]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.3025
    gamma = 0.6
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.3025
    gamma = 0.6
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.3025
    gamma = 0.6
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.6
    execute_on = timestep_end
  [../]
[]


[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]

  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = pull
  [../]

[]

[Materials]

  [./constant]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1.26e6
    poissons_ratio = .33
  [../]
  [./constant_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 1
    prop_names = 'density'
    prop_values = '0.00023832'
  [../]

[]


[Executioner]

  type = Transient
  # PETSC options
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'
  line_search = 'none'

  start_time = 0
  end_time = 1
  dtmax = 0.1
  dtmin = 0.1

  # control for adaptive time steping
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0.0 0.1      0.2     0.3    0.4        0.5      0.6   0.7      0.8    0.9    1.0'
    y = '0.0 0.000167 0.00133 0.0045 0.010667   0.020833 0.036 0.057167 0.0853 0.1215 0.16667'
    scale_factor = 1
  [../]
[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
   [./nonlinear_its]
     type = NumNonlinearIterations
   [../]

[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/fluidstate/coldwater_injection_radial.i

# Cold water injection into 1D radial hot reservoir (Avdonin, 1964)
#
# To generate results presented in documentation for this problem,
# set xmax = 1000 and nx = 200 in the Mesh block, and dtmax = 1e4
# and end_time = 1e6 in the Executioner block.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 50
  xmin = 0.1
  xmax = 5
  bias_x = 1.05
[]

[Problem]
  rz_coord_axis = Y
  coord_type = RZ
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[AuxVariables]
  [./temperature]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./temperature]
    type = PorousFlowPropertyAux
    variable = temperature
    property = temperature
    execute_on = 'initial timestep_end'
  [../]
[]

[Variables]
  [./pliquid]
    initial_condition = 5e6
  [../]
  [./h]
    scaling = 1e-6
  [../]
[]

[ICs]
  [./hic]
    type = PorousFlowFluidPropertyIC
    variable = h
    porepressure = pliquid
    property = enthalpy
    temperature = 170
    temperature_unit = Celsius
    fp = water
  [../]
[]

[Functions]
  [./injection_rate]
    type = ParsedFunction
    vals = injection_area
    vars = area
    value = '-0.1/area'
  [../]
[]

[BCs]
  [./source]
    type = PorousFlowSink
    variable = pliquid
    flux_function = injection_rate
    boundary = left
  [../]
  [./pright]
    type = DirichletBC
    variable = pliquid
    value = 5e6
    boundary = right
  [../]
  [./hleft]
    type = DirichletBC
    variable = h
    value = 678.52e3
    boundary = left
  [../]
  [./hright]
    type = DirichletBC
    variable = h
    value = 721.4e3
    boundary = right
  [../]
[]

[Kernels]
  [./mass]
    type = PorousFlowMassTimeDerivative
    variable = pliquid
  [../]
  [./massflux]
    type = PorousFlowAdvectiveFlux
    variable = pliquid
  [../]
  [./heat]
    type = PorousFlowEnergyTimeDerivative
    variable = h
  [../]
  [./heatflux]
    type = PorousFlowHeatAdvection
    variable = h
  [../]
  [./heatcond]
    type = PorousFlowHeatConduction
    variable = h
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pliquid h'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    pc_max = 1e6
    sat_lr = 0.1
    m = 0.5
    alpha = 1e-5
  [../]
  [./fs]
    type = PorousFlowWaterVapor
    water_fp = water
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./watervapor]
    type = PorousFlowFluidStateSingleComponent
    porepressure = pliquid
    enthalpy = h
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.8e-11 0 0 0 1.8e-11 0 0 0 1.8e-11'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
    sum_s_res = 0.1
  [../]
  [./internal_energy]
    type = PorousFlowMatrixInternalEnergy
    density = 2900
    specific_heat_capacity = 740
  [../]
  [./rock_thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '20 0 0  0 20 0  0 0 20'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1e3
  nl_abs_tol = 1e-8
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 100
  [../]
[]

[Postprocessors]
  [./injection_area]
    type = AreaPostprocessor
    boundary = left
    execute_on = initial
  [../]
[]

[VectorPostprocessors]
  [./line]
    type = ElementValueSampler
    sort_by = x
    variable = temperature
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  perf_graph = true
  [./csv]
    type = CSV
    execute_on = final
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_3/plane3_template2.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane3_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 200
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_4/cyl4_mu_0_2_pen_sm.i

[Mesh]
  file = cyl4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = cyl4_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = cyl4_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_added_mass_inertia_damping_action.i

# Test for small strain euler beam vibration in y direction

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The beam is massless with a lumped mass at the end of the beam. The lumped
# mass also has a moment of inertia associated with it.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 1e4
# Shear modulus (G) = 4e7
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 0.01
# Iy = 1e-4 = Iz
# Length (L)= 4 m
# mass (m) = 0.01899772
# Moment of inertia of lumped mass:
# Ixx = 0.2
# Iyy = 0.1
# Izz = 0.1
# mass proportional damping coefficient (eta) = 0.1

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 6.4e6
# Therefore, the beam behaves like a Euler-Bernoulli beam.

# The displacement time history from this analysis matches with that obtained from Abaqus.

# Values from the first few time steps are as follows:
# time   disp_y              vel_y               accel_y
# 0.0    0.0                 0.0                 0.0
# 0.1    0.001278249649738   0.025564992994761   0.51129985989521
# 0.2    0.0049813090917644  0.048496195845768  -0.052675802875074
# 0.3    0.0094704658873002  0.041286940064947  -0.091509312741339
# 0.4    0.013082280729802   0.03094935678508   -0.115242352856
# 0.5    0.015588313103503   0.019171290688959  -0.12031896906642

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 10.0'
    y = '0.0 1e-2  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  petsc_options_iname = '-ksp_type -pc_type'
  petsc_options_value = 'preonly   lu'

  dt = 0.1
  end_time = 5.0
  timestep_tolerance = 1e-6
[]

[Modules/TensorMechanics/LineElementMaster]
  [./all]
    add_variables = true
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'

    # Geometry parameters
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    y_orientation = '0.0 1.0 0.0'

    # dynamic simulation using consistent mass/inertia matrix
    dynamic_nodal_translational_inertia = true
    nodal_mass = 0.01899772

    dynamic_nodal_rotational_inertia = true
    nodal_Ixx = 2e-1
    nodal_Iyy = 1e-1
    nodal_Izz = 1e-1

    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'

    beta = 0.25 # Newmark time integration parameter
    gamma = 0.5 # Newmark time integration parameter

    boundary = right # Node set where nodal mass and nodal inertia are applied

    # optional parameters for Rayleigh damping
    eta = 0.1 # Mass proportional Rayleigh damping
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e4
    poissons_ratio = -0.999875
    shear_coefficient = 1.0
    block = 0
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  file_base = 'dyn_euler_small_added_mass_inertia_damping_out'
  exodus = true
  csv = true

  perf_graph = true
[]

modules/xfem/test/tests/second_order_elements/sm/square_branch_quad8_2d.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
  volumetric_locking_correction = false
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD8
  displacements = 'disp_x disp_y'
[]

[UserObjects]
  [./line_seg_cut_set_uo]
    type = LineSegmentCutSetUserObject
    cut_data = '-1.0000e-10   6.6340e-01   6.6340e-01  -1.0000e-10  0.0  1.0
                 3.3120e-01   3.3200e-01   1.0001e+00   3.3200e-01  1.0  2.0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./right_disp_x]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
  [./top_disp_y]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionDirichletBC
    boundary = 1
    variable = disp_x
    function = right_disp_x
  [../]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = top_disp_y
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.2
  num_steps = 5000
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/xfem/test/tests/pressure_bc/sm/edge_2d_pressure.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = False
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 9
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.0 0.5 0.5 0.5'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1.0 2.0'
    y = '0 500 1000'
  [../]
[]

[BCs]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    variable = disp_x
    value = 0.0
  [../]
[]

[DiracKernels]
  [./pressure_x]
    type = XFEMPressure
    variable = disp_x
    component = 0
    function = pressure
  [../]

  [./pressure_y]
    type = XFEMPressure
    variable = disp_y
    component = 1
    function = pressure
  [../]
[]


[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1
  end_time = 2
[]

[Outputs]
  file_base = edge_2d_pressure_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/GBDependentTensors/gb_property.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 2
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);0.1+0.1*v'
    [../]
  [../]
  [./mu]
  [../]
[]

[AuxVariables]
  [./gb]
    family = LAGRANGE
    order  = FIRST
  [../]
  [./mobility_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./mobility_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./diffusivity_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./diffusivity_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./aniso_tensor_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./aniso_tensor_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
[]

[Kernels]
  [./conc]
    type = CHSplitConcentration
    variable = c
    mobility = mobility_prop
    chemical_potential_var = mu
  [../]
  [./chempot]
    type = CHSplitChemicalPotential
    variable = mu
    chemical_potential_prop = mu_prop
    c = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[AuxKernels]
  [./gb]
    type = FunctionAux
    variable = gb
    function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);v'
  [../]
  [./mobility_xx]
    type = MaterialRealTensorValueAux
    variable = mobility_xx
    property = mobility_prop
    row = 0
    column = 0
  [../]
  [./mobility_yy]
    type = MaterialRealTensorValueAux
    variable = mobility_yy
    property = mobility_prop
    row = 1
    column = 1
  [../]
  [./diffusivity_xx]
    type = MaterialRealTensorValueAux
    variable = diffusivity_xx
    property = diffusivity
    row = 0
    column = 0
  [../]
  [./diffusivity_yy]
    type = MaterialRealTensorValueAux
    variable = diffusivity_yy
    property = diffusivity
    row = 1
    column = 1
  [../]
  [./aniso_tensor_xx]
    type = MaterialRealTensorValueAux
    variable = aniso_tensor_xx
    property = aniso_tensor
    row = 0
    column = 0
  [../]
  [./aniso_tensor_yy]
    type = MaterialRealTensorValueAux
    variable = aniso_tensor_yy
    property = aniso_tensor
    row = 1
    column = 1
  [../]
[]

[Materials]
  [./chemical_potential]
    type = DerivativeParsedMaterial
    block = 0
    f_name = mu_prop
    args = c
    function = 'c'
    derivative_order = 1
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    function = 'c*(1.0-c)'
    args = c
    f_name = var_dep
    derivative_order = 1
  [../]
  [./mobility]
    type = CompositeMobilityTensor
    block = 0
    M_name = mobility_prop
    tensors = diffusivity
    weights = var_dep
    args = c
  [../]
  [./phase_normal]
    type = PhaseNormalTensor
    phase = gb
    normal_tensor_name = gb_normal
  [../]
  [./aniso_tensor]
    type = GBDependentAnisotropicTensor
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = aniso_tensor
  [../]
  [./diffusivity]
    type = GBDependentDiffusivity
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = diffusivity
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 20
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  l_tol = 1e-3
  l_max_its = 20
  nl_max_its = 5
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/tensile/small_deform2_update_version.i

# Using TensileStressUpdate
# checking for small deformation
# A single element is stretched equally in all directions.
# This causes the return direction to be along the sigma_I = sigma_II = sigma_III line
# tensile_strength is set to 1Pa, and smoothing_tol = 0.1Pa
# The smoothed yield function comes from two smoothing operations.
# The first is on sigma_I and sigma_II (sigma_I >= sigma_II >= sigma_III):
# yf = sigma_I + ismoother(0) - tensile_strength
#    = sigma_I + (0.5 * smoothing_tol - smoothing_tol / Pi) - tensile_strength
#    = sigma_I + 0.018169 - 1
# The second has the argument of ismoother equal to -0.018169.
# ismoother(-0.018169) = 0.5 * (-0.018169 + 0.1) - 0.1 * cos (0.5 * Pi * -0.018169 / 0.1) / Pi
#                     = 0.010372
# So the final yield function is
# yf = sigma_I + 0.018169 + 0.010372 - 1 = sigma_I + 0.028541 - 1
# However, because of the asymmetry in smoothing (the yield function is obtained
# by first smoothing sigma_I-ts and sigma_II-ts, and then by smoothing this
# result with sigma_III-ts) the result is sigma_I = sigma_II > sigma_III


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_update_version
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/tensor_mechanics/test/tests/tensile/small_deform_hard3.i

# checking for small deformation, with cubic hardening
# A single element is repeatedly stretched by in z direction
# tensile_strength is set to 1Pa, tensile_strength_residual = 0.5Pa, and limit value = 1E-5
# This allows the hardening of the tensile strength to be observed

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1.0
    value_residual = 0.5
    internal_0 = 0
    internal_limit = 1E-5
  [../]
  [./mc]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    yield_function_tolerance = 1E-6
    tensile_tip_smoother = 0.0
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '1 2 3 2 -4 -5 3 -5 10'
    debug_jac_at_pm = 0.8
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-8
    debug_pm_change = 1E-5
    debug_intnl_change = 1E-5
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1.0
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/phase_field/test/tests/phase_field_crystal/PFCRFF_split/PFCRFF_split_test_master.i

[GlobalParams]
  num_L = 5
  L_name_base = L
  ymax = 6
  xmax = 6
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 12
  ny = 12
[]

[Variables]
  [./n]
    [./InitialCondition]
      type = RandomIC
      max = 0.8
      min = 0.2
      seed = 12345
    [../]
  [../]
  [./CHPFCRFFSplitVariables]
    sub_filenames = PFCRFF_split_test_sub.i
    n_name = n
    #sub_file_name = test_sub.i
  [../]
[]

[Kernels]
  [./CHPFCRFFSplitKernel]
    log_approach = expansion
    n_name = n
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./PFC]
    type = PFCRFFMaterial
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Preconditioning]
  active = 'SMP'
  [./SMP]
    type = SMP
    full = true
  [../]
  [./FDP]
    type = FDP
    full = true
  [../]
[]

[Executioner]
  # petsc_options = '-snes_mf_operator -ksp_monitor'
  # petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  # petsc_options_value = 'hypre boomeramg 31'
  # petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  # petsc_options_value = 'asm         101   preonly   lu      1'
  type = Transient
  num_steps = 1
  dt = 0.1
  l_max_its = 50
  nl_max_its = 20
  petsc_options = '-pc_factor_shift_nonzero'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'
  l_tol = 1e-04
  nl_rel_tol = 1e-9
  scheme = bdf2
[]

[Outputs]
  exodus = true
[]

[ICs]
  active = ''
  [./density_IC]
    y2 = 10.5
    lc = 6
    y1 = 1.5
    min = .8
    max = .2
    x2 = 10.5
    crystal_structure = FCC
    variable = n
    x1 = 1.5
    type = PFCFreezingIC
  [../]
[]

test/tests/transfers/multiapp_copy_transfer/constant_monomial_from_sub/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./aux]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./aux]
    type = FunctionAux
    variable = aux
    execute_on = initial
    function = 10*x*y
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  hide = 'u'
  exodus = true
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_3d_mouth_dir_end_dir_vec.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#Crack direction is defined using the crack mouth coordinates.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack3d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackMouth
  crack_mouth_boundary = 900
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '1.0 0.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  output_variable = 'disp_x'
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]


[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Postprocessors]
  [./disp_x_centercrack]
    type = CrackFrontData
    crack_front_definition = crackFrontDefinition
    variable = disp_x
    crack_front_point_index = 1
  [../]
[]

[Outputs]
  file_base = j_integral_3d_mouth_dir_end_dir_vec_out
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/radial_disp_aux/cylinder_2d_cartesian.i

# The purpose of this set of tests is to check the values computed
# by the RadialDisplacementAux AuxKernel. They should match the
# radial component of the displacment for a cylindrical or spherical
# model.
# This particular model is of a cylinder subjected to uniform thermal
# expansion represented using a 2D Cartesian model.

[Mesh]
  type = FileMesh
  file = circle_sector_2d.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  order = SECOND
  family = LAGRANGE
[]

[AuxVariables]
  [./temp]
  [../]
  [./rad_disp]
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t+300.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    eigenstrain_names = eigenstrain
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
    use_displaced_mesh = false
  [../]
  [./raddispaux]
    type = RadialDisplacementCylinderAux
    variable = rad_disp
    origin = '0 0 0'
  [../]
[]

[BCs]
  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 300
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '51'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  end_time = 1
  dt = 1
  dtmin = 1
[]

[Outputs]
 csv = true
 exodus = true
[]

#[Postprocessors]
#  [./strain_xx]
#    type = SideAverageValue
#    variable =
#    block = 0
#  [../]
#[]

modules/porous_flow/test/tests/fluidstate/brineco2_2.i

# Injection of supercritical CO2 into a single brine saturated cell. The CO2 initially fully
# dissolves into the brine, increasing its density slightly. After a few time steps,
# the brine is saturated with CO2, and subsequently a supercritical gas phase of CO2 saturated
# with a small amount of H2O is formed. Salt is included as a nonlinear variable.

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  temperature = 30
[]

[Variables]
  [./pgas]
    initial_condition = 20e6
  [../]
  [./z]
  [../]
  [./xnacl]
    initial_condition = 0.1
  [../]
[]

[DiracKernels]
  [./source]
    type = PorousFlowSquarePulsePointSource
    variable = z
    point = '0.5 0.5 0'
    mass_flux = 2
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    value = 20e6
    variable = pgas
    boundary = left
  [../]
  [./right]
    type = DirichletBC
    value = 20e6
    variable = pgas
    boundary = right
  [../]
[]

[AuxVariables]
  [./pressure_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./pressure_water]
    type = PorousFlowPropertyAux
    variable = pressure_water
    property = pressure
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./pressure_gas]
    type = PorousFlowPropertyAux
    variable = pressure_gas
    property = pressure
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation_water
    property = saturation
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./density_water]
    type = PorousFlowPropertyAux
    variable = density_water
    property = density
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./density_gas]
    type = PorousFlowPropertyAux
    variable = density_gas
    property = density
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_water]
    type = PorousFlowPropertyAux
    variable = viscosity_water
    property = viscosity
    phase = 0
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_gas]
    type = PorousFlowPropertyAux
    variable = viscosity_gas
    property = viscosity
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./x1_water]
    type = PorousFlowPropertyAux
    variable = x1_water
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = 'initial timestep_end'
  [../]
  [./x1_gas]
    type = PorousFlowPropertyAux
    variable = x1_gas
    property = mass_fraction
    phase = 1
    fluid_component = 1
    execute_on = 'initial timestep_end'
  [../]
  [./x0_water]
    type = PorousFlowPropertyAux
    variable = x0_water
    property = mass_fraction
    phase = 0
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./x0_gas]
    type = PorousFlowPropertyAux
    variable = x0_gas
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
  [./mass2]
    type = PorousFlowMassTimeDerivative
    variable = xnacl
    fluid_component = 2
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z xnacl'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    temperature_unit = Celsius
    xnacl = xnacl
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 10
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./density_water]
    type = ElementIntegralVariablePostprocessor
    variable = density_water
    execute_on = 'initial timestep_end'
  [../]
  [./density_gas]
    type = ElementIntegralVariablePostprocessor
    variable = density_gas
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_water]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_water
    execute_on = 'initial timestep_end'
  [../]
  [./viscosity_gas]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_gas
    execute_on = 'initial timestep_end'
  [../]
  [./x1_water]
    type = ElementIntegralVariablePostprocessor
    variable = x1_water
    execute_on = 'initial timestep_end'
  [../]
  [./x0_water]
    type = ElementIntegralVariablePostprocessor
    variable = x0_water
    execute_on = 'initial timestep_end'
  [../]
  [./x1_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x1_gas
    execute_on = 'initial timestep_end'
  [../]
  [./x0_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x0_gas
    execute_on = 'initial timestep_end'
  [../]
  [./sg]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_gas
    execute_on = 'initial timestep_end'
  [../]
  [./sw]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_water
    execute_on = 'initial timestep_end'
  [../]
  [./pwater]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_water
    execute_on = 'initial timestep_end'
  [../]
  [./pgas]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_gas
    execute_on = 'initial timestep_end'
  [../]
  [./xnacl]
    type = ElementIntegralVariablePostprocessor
    variable = xnacl
    execute_on = 'initial timestep_end'
  [../]
  [./x0mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    phase = '0 1'
    execute_on = 'initial timestep_end'
  [../]
  [./x1mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = '0 1'
    execute_on = 'initial timestep_end'
  [../]
  [./x2mass]
    type = PorousFlowFluidMass
    fluid_component = 2
    phase = '0 1'
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  csv = true
  file_base = brineco2_2
  execute_on = 'initial timestep_end'
  perf_graph = true
[]

modules/porous_flow/test/tests/dispersion/diff01_action.i

# Test diffusive part of PorousFlowDispersiveFlux kernel by setting dispersion
# coefficients to zero. Pressure is held constant over the mesh, and gravity is
# set to zero so that no advective transport of mass takes place.
# Mass fraction is set to 1 on the left hand side and 0 on the right hand side.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmax = 10
  bias_x = 1.1
[]

[GlobalParams]
  PorousFlowDictator = andy_heheheh
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
[]

[ICs]
  [./pp]
    type = ConstantIC
    variable = pp
    value = 1e5
  [../]
  [./massfrac0]
    type = ConstantIC
    variable = massfrac0
    value = 0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    value = 1
    variable = massfrac0
    boundary = left
  [../]
  [./right]
    type = DirichletBC
    value = 0
    variable = massfrac0
    boundary = right
  [../]
  [./pright]
    type = DirichletBC
    variable = pp
    boundary = right
    value = 1e5
  [../]
  [./pleft]
    type = DirichletBC
    variable = pp
    boundary = left
    value = 1e5
  [../]
[]

[Kernels]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = massfrac0
    disp_trans = 0
    disp_long = 0
    gravity = '0 0 0'
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = pp
    disp_trans = 0
    disp_long = 0
    gravity = '0 0 0'
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.0
      bulk_modulus = 1E7
      viscosity = 0.001
      density0 = 1000.0
    [../]
  [../]
[]

[PorousFlowUnsaturated]
  porepressure = pp
  gravity = '0 0 0'
  fp = the_simple_fluid
  dictator_name = andy_heheheh
  relative_permeability_type = Corey
  relative_permeability_exponent = 0.0
  mass_fraction_vars = massfrac0
[]

[Materials]
  [./poro]
    type = PorousFlowPorosityConst
    porosity = 0.3
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1 1'
    tortuosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-9 0 0 0 1e-9 0 0 0 1e-9'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2             '
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 20
[]

[VectorPostprocessors]
  [./xmass]
    type = NodalValueSampler
    sort_by = id
    variable = massfrac0
  [../]
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_3/plane3_template1_sm.i

[Mesh]
  file = plane3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/solid_mechanics/test/tests/material_limit_time_step/creep/nafems_test5a_lim.i

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  temp = temp
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = plane1_mesh.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./temp]
    initial_condition = 1500.0
  [../]
  [./creep]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./invariant3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./creep_aux]
    type = MaterialRealAux
    property = effective_creep_strain
    variable = creep
  [../]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
  [../]
  [./pressure]
    type = MaterialTensorAux
    tensor = stress
    variable = pressure
    quantity = hydrostatic
  [../]
  [./invariant3]
    type = MaterialTensorAux
    tensor = stress
    variable = invariant3
    quantity = thirdInvariant
  [../]
  [./creep_strain_xx]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_xx
    index = 0
  [../]
  [./creep_strain_yy]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_yy
    index = 1
  [../]
  [./creep_strain_zz]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_zz
    index = 2
  [../]
  [./creep_strain_xy]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_xy
    index = 3
  [../]
  [./elastic_str_xx_aux]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_xx
    index = 0
  [../]
  [./elastic_str_yy_aux]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]
  [./elastic_str_zz_aux]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_zz
    index = 2
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 3
    component = 1
    factor = -100.0
  [../]
  [./side_press]
    type = Pressure
    variable = disp_x
    boundary = 4
    component = 0
    factor = -200.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = SolidModel
    block = 1
    youngs_modulus = 200e3
    poissons_ratio = 0.3
    constitutive_model = combined
    formulation = NonlinearPlaneStrain
    large_strain = true
  [../]
  [./combined]
    type = CombinedCreepPlasticity
    block = 1
    submodels = 'creep_matl'
  [../]
  [./creep_matl]
    type = PowerLawCreepModel
    block = 1
    coefficient = 3.125e-14
    n_exponent = 5
    activation_energy = 0
    max_inelastic_increment = 0.01
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_rel_tol = 1e-5
  nl_abs_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  end_time = 1000.0
  num_steps = 10000
  l_tol = 1e-3

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1e-6
    time_t = '1e-6  2e-6 3e-6 5e-6 9e-6 1.7e-5 3.3e-5 6.5e-5 1.29e-4 2.57e-4 5.13e-4 1.025e-3 2.049e-3 4.097e-3 8.193e-3 1.638e-2 3.276e-2 5.734e-2 0.106 0.180 0.291 0.457 0.706 1.08 1.64 2.48 3.74 5.63 8.46 12.7 19.1 28.7 43.0 64.5 108.0 194.0 366.0 710.0 1000.0'
    time_dt = '1e-6 1e-6 2e-6 4e-6 8e-6 1.6e-5 3.2e-5 6.4e-5 1.28e-4 2.56e-4 5.12e-4 1.024e-3 2.048e-3 4.096e-3 8.192e-3 1.6384e-2 2.458e-2 4.915e-2 7.40e-2 0.111 0.166 0.249 0.374 0.560 0.840 1.26 1.89 2.83 4.25 6.40 9.6 14.3 21.5 43.0 86.1 172.0 344.0 290.0 290.0'
    optimal_iterations = 30
    iteration_window = 9
    growth_factor = 2.0
    cutback_factor = 0.5
    timestep_limiting_postprocessor = matl_ts_min
  [../]

[]

[Postprocessors]
  [./matl_ts_min]
    type = MaterialTimeStepPostprocessor
  [../]
  [./sigma_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./pressure]
    type = ElementAverageValue
    variable = pressure
  [../]
  [./invariant3]
    type = ElementAverageValue
    variable = invariant3
  [../]
  [./eps_crp_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
  [../]
  [./eps_crp_yy]
    type = ElementAverageValue
    variable = creep_strain_yy
  [../]
  [./eps_crp_zz]
    type = ElementAverageValue
    variable = creep_strain_zz
  [../]
  [./eps_crp_mag]
    type = ElementAverageValue
    variable = creep
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x3]
    type = NodalVariableValue
    nodeid = 2
    variable = disp_x
  [../]
  [./disp_y3]
    type = NodalVariableValue
    nodeid = 2
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./elas_str_xx]
    type = ElementAverageValue
    variable = elastic_strain_xx
  [../]
  [./elas_str_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./elas_str_zz]
    type = ElementAverageValue
    variable = elastic_strain_zz
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  csv = true
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 25
  [../]
[]

modules/combined/test/tests/multiphase_mechanics/simpleeigenstrain.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 250
  ymax = 250
  elem_type = QUAD4
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 125.0
      y1 = 125.0
      radius = 60.0
      invalue = 1.0
      outvalue = 0.1
      int_width = 50.0
    [../]
  [../]
  [./e11_aux]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_e11]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = e11_aux
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.
  [../]
  [./left]
    type = DirichletBC
    boundary = left
    variable = disp_x
    value = 0.
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[Materials]
  # This deprecated material is replaced by the materials below
  #
  #[./eigenstrain]
  #  type = SimpleEigenStrainMaterial
  #  block = 0
  #  epsilon0 = 0.05
  #  c = c
  #  disp_y = disp_y
  #  disp_x = disp_x
  #  C_ijkl = '3 1 1 3 1 3 1 1 1 '
  #  fill_method = symmetric9
  #[../]

  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric9
    C_ijkl = '3 1 1 3 1 3 1 1 1 '
  [../]
  [./strain]
    type = ComputeSmallStrain
    eigenstrain_names = eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./prefactor]
    type = DerivativeParsedMaterial
    args = c
    f_name = prefactor
    constant_names       = 'epsilon0 c0'
    constant_expressions = '0.05     0'
    function = '(c - c0) * epsilon0'
  [../]
  [./eigenstrain]
    type = ComputeVariableEigenstrain
    eigen_base = '1'
    args = c
    prefactor = prefactor
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  nl_abs_tol = 1e-10
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/large_deform4.i

# apply a number of "random" configurations and
# check that the algorithm returns to the yield surface
# using the 'cap' tip_scheme
#
# must be careful here - we cannot put in arbitrary values of C_ijkl, otherwise the condition
# df/dsigma * C * flow_dirn < 0 for some stresses
# The important features that must be obeyed are:
# 0 = C_0222 = C_1222  (holds for transversely isotropic, for instance)
# C_0212 < C_0202 = C_1212 (holds for transversely isotropic)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  # the following are "random" deformations
  # each is O(1E-1) to provide large deformations
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = '(sin(0.1*t)+x)/1E1'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = '(cos(t)+x*y)/1E1'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 'sin(0.4321*t)*x*y*z/1E1'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./yield_fcn_at_zero]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'yield_fcn_at_zero'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E3
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.577350269
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.08748866
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tip_scheme = cap
    smoother = 100
    cap_rate = 0.001
    cap_start = 0.0
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    # the following is transversely isotropic, i think.
    fill_method = symmetric9
    C_ijkl = '3E9 1E9 3E9 3E9 3E9 6E9 1E9 1E9 9E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    max_NR_iterations = 100
    ep_plastic_tolerance = 1E-3
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1E4
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = large_deform4
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/time_integrators/multi_stage_time_integrator/unconverged_1st_stage.i

# This test is designed to check that a time step solve should stop if *any*
# time integrator solve stage fails, not just the *last* stage. If a time
# integrator does not check convergence per stage, then a time step proceeds
# past intermediate stages without checking nonlinear convergence. This test
# is designed to check that the 2nd stage is never even entered by making it
# impossible for the first stage to converge.

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -1
  xmax = 1
  nx = 5
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = x
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*x
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./body]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    variable = u
    function = ic
  [../]
[]

[BCs]
  [./bcs]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  [./TimeIntegrator]
    type = LStableDirk2
  [../]
  num_steps = 1
  abort_on_solve_fail = true

  solve_type = NEWTON
  nl_max_its = 0
[]

modules/phase_field/test/tests/initial_conditions/SpecifiedSmoothSuperellipsoidIC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c]
    type = SpecifiedSmoothSuperellipsoidIC
    variable = c
    x_positions = '15 35'
    y_positions = '25.0 25.0'
    z_positions = '0 0'
    as = '8.0 8.0'
    bs = '12.0 8.0'
    cs = '60.0 8.0'
    ns = '3.5 2.0'
    invalue = 1.0
    outvalue = -0.8
    int_width = 4.0
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 20
  l_tol = 1.0e-4
  nl_max_its = 40
  nl_rel_tol = 1e-9

  start_time = 0.0
  num_steps = 1
  dt = 2.0
[]

[Outputs]
  exodus = false
  [./out]
    type = Exodus
    refinements = 2
  [../]
[]

modules/combined/test/tests/simplest_contact/sm/simplest_contact_skew_test_sm.i

[Mesh]
  file = simplest_contact_skew.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 2
    paired_boundary = 3
  [../]
[]

[Constraints]
  [./contact_x]
    type = MultiDContactConstraint
    variable = disp_x
    master_variable = disp_x
    component = 0
    slave = 2
    master = 3
    penalty = 1e6
  [../]

  [./contact_y]
    type = MultiDContactConstraint
    variable = disp_y
    master_variable = disp_y
    component = 1
    slave = 2
    master = 3
    penalty = 1e6
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]


[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  #petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  #petsc_options_value = 'hypre    boomeramg      101'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'

  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/functional_expansion_tools/examples/2D_interface_different_submesh/main.i

# Derived from the example '2D_interface' with the following differences:
#
#   1) The number of y divisions in the sub app is not the same as the master app
#   2) The subapp mesh is skewed in y
#   3) The Functional Expansion order for the flux term was increased to 7
[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0.0
  xmax = 0.4
  nx = 6
  ymin = 0.0
  ymax = 10.0
  ny = 20
[]

[Variables]
  [./m]
  [../]
[]

[Kernels]
  [./diff_m]
    type = HeatConduction
    variable = m
  [../]
  [./time_diff_m]
    type = HeatConductionTimeDerivative
    variable = m
  [../]
  [./source_m]
    type = BodyForce
    variable = m
    value = 100
  [../]
[]

[Materials]
  [./Impervium]
    type = GenericConstantMaterial
    prop_names =  'thermal_conductivity specific_heat density'
    prop_values = '0.00001              50.0          100.0' # W/(cm K), J/(g K), g/cm^3
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    value = 2
    variable = m
  [../]
[]

[BCs]
  [./interface_value]
    type = FXValueBC
    variable = m
    boundary = right
    function = FX_Basis_Value_Main
  [../]
  [./interface_flux]
    type = FXFluxBC
    boundary = right
    variable = m
    function = FX_Basis_Flux_Main
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '4'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
  [./FX_Basis_Flux_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '7'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
[]

[UserObjects]
  [./FX_Flux_UserObject_Main]
    type = FXBoundaryFluxUserObject
    function = FX_Basis_Flux_Main
    variable = m
    boundary = right
    diffusivity = thermal_conductivity
  [../]
[]

[Postprocessors]
  [./average_interface_value]
    type = SideAverageValue
    variable = m
    boundary = right
  [../]
  [./total_flux]
    type = SideFluxIntegral
    variable = m
    boundary = right
    diffusivity = thermal_conductivity
  [../]
  [./picard_iterations]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1.0
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = sub.i
    sub_cycling = true
  [../]
[]

[Transfers]
  [./FluxToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Flux_UserObject_Main
    multi_app_object_name = FX_Basis_Flux_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
  [./FluxToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Flux_Main
    multi_app_object_name = FX_Flux_UserObject_Sub
  [../]
[]

modules/tensor_mechanics/test/tests/global_strain/global_strain_uniaxial.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 2
    ny = 2
    nz = 2
  []
  [cnode]
    type = ExtraNodesetGenerator
    coord = '0.0 0.0 0.0'
    new_boundary = 100
    input = generated_mesh
  []
[]

[Variables]
  [./u_x]
  [../]
  [./u_y]
  [../]
  [./u_z]
  [../]
  [./global_strain]
    order = SIXTH
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./s00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./s11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e11]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = GlobalDisplacementAux
    variable = disp_x
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 0
  [../]
  [./disp_y]
    type = GlobalDisplacementAux
    variable = disp_y
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 1
  [../]
  [./disp_z]
    type = GlobalDisplacementAux
    variable = disp_z
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 2
  [../]
  [./s00]
    type = RankTwoAux
    variable = s00
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./s11]
    type = RankTwoAux
    variable = s11
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
  [../]
  [./e00]
    type = RankTwoAux
    variable = e00
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 0
  [../]
  [./e11]
    type = RankTwoAux
    variable = e11
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
  [../]
[]

[GlobalParams]
  displacements = 'u_x u_y u_z'
  block = 0
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[ScalarKernels]
  [./global_strain]
    type = GlobalStrain
    variable = global_strain
    global_strain_uo = global_strain_uo
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y z'
      variable = ' u_x u_y u_z'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = u_x
    value = 0
  [../]
  [./centerfix_y]
    type = DirichletBC
    boundary = 100
    variable = u_y
    value = 0
  [../]
  [./centerfix_z]
    type = DirichletBC
    boundary = 100
    variable = u_z
    value = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '70e9 0.33'
    fill_method = symmetric_isotropic_E_nu
  [../]
  [./strain]
    type = ComputeSmallStrain
    global_strain = global_strain
  [../]
  [./global_strain]
    type = ComputeGlobalStrain
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[UserObjects]
  [./global_strain_uo]
    type = GlobalStrainUserObject
    applied_stress_tensor = '5e9 0 0 0 0 0'
    execute_on = 'Initial Linear Nonlinear'
  [../]
[]

[Postprocessors]
  [./l2err_e00]
    type = ElementL2Error
    variable = e00
    function = 0.07142857 #strain_xx = C1111/sigma_xx
  [../]
  [./l2err_e11]
    type = ElementL2Error
    variable = e11
    function = -0.07142857*0.33 #strain_yy = -nu*strain_xx
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  line_search = basic

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  l_max_its = 30
  nl_max_its = 12

  nl_rel_tol = 1.0e-10

  start_time = 0.0
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/heat_conduction/no_fluid.i

# 0phase heat conduction.
# apply a boundary condition of T=300 to a bar that
# is initially at T=200, and observe the expected
# error-function response
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./temp]
    initial_condition = 200
  [../]
[]

[Kernels]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
  [./heat_conduction]
    type = PorousFlowHeatConduction
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp'
    number_fluid_phases = 0
    number_fluid_components = 0
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '2.2 0 0  0 0 0  0 0 0'
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 2.2
    density = 0.5
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 300
    variable = temp
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E1
  end_time = 1E2
[]

[Postprocessors]
  [./t000]
    type = PointValue
    variable = temp
    point = '0 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t010]
    type = PointValue
    variable = temp
    point = '10 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t020]
    type = PointValue
    variable = temp
    point = '20 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t030]
    type = PointValue
    variable = temp
    point = '30 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t040]
    type = PointValue
    variable = temp
    point = '40 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t050]
    type = PointValue
    variable = temp
    point = '50 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t060]
    type = PointValue
    variable = temp
    point = '60 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t070]
    type = PointValue
    variable = temp
    point = '70 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t080]
    type = PointValue
    variable = temp
    point = '80 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t090]
    type = PointValue
    variable = temp
    point = '90 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./t100]
    type = PointValue
    variable = temp
    point = '100 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  file_base = no_fluid
  [./csv]
    type = CSV
  [../]
  exodus = false
[]

modules/tensor_mechanics/test/tests/jacobian/cto08.i

# checking jacobian for 3-plane linear plasticity using SimpleTester.
#
# This is like the test multi/three_surface12.i
# Plasticity models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# trial stress_yy = 0.15 and stress_zz = 1.5
#
# Then SimpleTester0 and SimpleTester1 should activate and the algorithm will return to
# stress_zz=1=stress_yy
# internal0 should be 0.5 and internal1 should be 0.5



[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 0.15 0  0 0 1.5'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    tangent_operator = linear
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/porous_flow/test/tests/basic_advection/1phase.i

# Basic advection of u in a 1-phase situation
#
# grad(P) = -2
# density * gravity = 4 * 0.25
# grad(P) - density * gravity = -3
# permeability = 5
# viscosity = 150
# so Darcy velocity = 0.1
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./P]
  [../]
[]

[ICs]
  [./P]
    type = FunctionIC
    variable = P
    function = '2*(1-x)'
  [../]
  [./u]
    type = FunctionIC
    variable = u
    function = 'if(x<0.1,1,0)'
  [../]
[]

[Kernels]
  [./u_dot]
    type = TimeDerivative
    variable = u
  [../]
  [./u_advection]
    type = PorousFlowBasicAdvection
    variable = u
    phase = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = ''
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 4
      thermal_expansion = 0
      viscosity = 150.0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = P
    capillary_pressure = pc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '5 0 0 0 5 0 0 0 5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  [../]
  [./darcy_velocity]
    type = PorousFlowDarcyVelocityMaterial
    gravity = '0.25 0 0'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 1
    variable = u
  [../]
  [./right]
    type = DirichletBC
    boundary = right
    value = 0
    variable = u
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -snes_rtol'
    petsc_options_value = ' lu       1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 5
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
[]

test/tests/multiapps/multilevel/dt_from_master_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0 0.5 0.5 0'
    input_files = dt_from_master_subsub.i
  [../]
[]

modules/tensor_mechanics/test/tests/line_material_rank_two_sampler/rank_two_sampler.i

[GlobalParams]
  displacements = 'x_disp y_disp z_disp'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
  elem_type = HEX
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e-6
  [../]
[]

[Variables]
  [./x_disp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./y_disp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./z_disp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
 [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
 [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
[]

[VectorPostprocessors]
  [./stress_xx]
    type = LineMaterialRankTwoSampler
    start = '0.1667 0.4 0.45'
    end   = '0.8333 0.6 0.55'
    property = stress
    index_i = 0
    index_j = 0
    sort_by = id
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./front]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = 5
    function = rampConstant
  [../]
  [./back_x]
    type = DirichletBC
    variable = x_disp
    boundary = 0
    value = 0.0
  [../]
  [./back_y]
    type = DirichletBC
    variable = y_disp
    boundary = 0
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = z_disp
    boundary = 0
    value = 0.0
  [../]
[]

[Materials]
  [./elast_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = .3
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK

  l_max_its = 100

  start_time = 0.0
  num_steps = 99999
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  file_base = rank_two_sampler_out
  exodus = true
  csv = true
[]

modules/combined/test/tests/inelastic_strain/elas_plas/elas_plas_nl1_cycle_sm.i

#
# Test for effective strain calculation.
# Boundary conditions from NAFEMS test NL1
#
# This is not a verification test. The boundary conditions are applied such
# that the first step generates only elastic stresses. The rest of the load
# steps generate cycles of tension and compression in the axial (i.e., y-axis)
# direction. The axial stresses and strains also cycle, however the effective
# plastic strain increases in value throughout the analysis.
#
[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
[]

[Mesh]#Comment
  file = one_elem2.e
  displacements = 'disp_x disp_y'
[] # Mesh

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[] # Variables

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eff_plastic_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[] # AuxVariables

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./pressure]
    type = MaterialTensorAux
    tensor = stress
    variable = pressure
    quantity = hydrostatic
    execute_on = timestep_end
  [../]
  [./elastic_strain_xx]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_xx
    index = 0
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]
  [./elastic_strain_zz]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_zz
    index = 2
  [../]
  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]
  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]
  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]
  [./tot_strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = tot_strain_xx
    index = 0
  [../]
  [./tot_strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = tot_strain_yy
    index = 1
  [../]
  [./tot_strain_zz]
    type = MaterialTensorAux
    tensor = total_strain
    variable = tot_strain_zz
    index = 2
  [../]
  [./eff_plastic_strain]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = eff_plastic_strain
  [../]
[] # AuxKernels

[Functions]
  [./appl_dispy]
    type = PiecewiseLinear
    x = '0     1.0     2.0     3.0     4.0     5.0      6.0    7.0     8.0    9.0     10.0      11.0     12.0'
    y = '0.0 0.208e-4 0.50e-4 1.00e-4 0.784e-4 0.50e-4  0.0  0.216e-4 0.5e-4 1.0e-4 0.785e-4  0.50e-4  0.0'
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 101
    value = 0.0
  [../]
  [./origin_x]
    type = DirichletBC
    variable = disp_x
    boundary = 103
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 102
    value = 0.0
  [../]
  [./origin_y]
    type = DirichletBC
    variable = disp_y
    boundary = 103
    value = 0.0
  [../]
  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = appl_dispy
  [../]
[] # BCs

[Materials]
  [./stiffStuff1]
    type = SolidModel
    block = 1
    youngs_modulus = 250e9
    poissons_ratio = 0.25
    constitutive_model = isoplas
    formulation = NonlinearPlaneStrain
  [../]
  [./isoplas]
    type = IsotropicPlasticity
    block = 1
    yield_stress = 5e6
    hardening_constant = 0.0
    relative_tolerance = 1e-20
    absolute_tolerance = 1e-8
  [../]
[] # Materials

[Executioner]
  type = Transient
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 20

  dt = 1.0
  start_time = 0.0
  num_steps = 100
  end_time = 12.0
[] # Executioner

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./stress_xy]
    type = ElementAverageValue
    variable = stress_xy
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./pressure]
    type = ElementAverageValue
    variable = pressure
  [../]
  [./el_strain_xx]
    type = ElementAverageValue
    variable = elastic_strain_xx
  [../]
  [./el_strain_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./el_strain_zz]
    type = ElementAverageValue
    variable = elastic_strain_zz
  [../]
  [./pl_strain_xx]
    type = ElementAverageValue
    variable = plastic_strain_xx
  [../]
  [./pl_strain_yy]
    type = ElementAverageValue
    variable = plastic_strain_yy
  [../]
  [./pl_strain_zz]
    type = ElementAverageValue
    variable = plastic_strain_zz
  [../]
  [./eff_plastic_strain]
    type = ElementAverageValue
    variable = eff_plastic_strain
  [../]
  [./tot_strain_xx]
    type = ElementAverageValue
    variable = tot_strain_xx
  [../]
  [./tot_strain_yy]
    type = ElementAverageValue
    variable = tot_strain_yy
  [../]
  [./tot_strain_zz]
    type = ElementAverageValue
    variable = tot_strain_zz
  [../]
  [./disp_x1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_x
  [../]
  [./disp_x4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_x
  [../]
  [./disp_y1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  file_base=elas_plas_nl1_cycle_out
  [./console]
    type = Console
    output_linear = true
  [../]
[] # Outputs

modules/combined/examples/thermomechanics/circle_thermal_expansion_stress.i

# This example problem demonstrates coupling heat conduction with mechanics.
# A circular domain has as uniform heat source that increases with time
# and a fixed temperature on the outer boundary, resulting in a temperature gradient.
# This results in heterogeneous thermal expansion, where it is pinned in the center.
# Looking at the hoop stress demonstrates why fuel pellets have radial cracks
# that extend from the outer boundary to about halfway through the radius.
# The problem is run with length units of microns.

[Mesh]
  #Circle mesh has a radius of 1000 units
  type = FileMesh
  file = circle.e
  uniform_refine = 1
[]

[Variables]
  # We solve for the temperature and the displacements
  [./T]
    initial_condition = 800
    scaling = 1e7
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./radial_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hoop_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  active = 'TensorMechanics htcond Q_function'
  [./htcond] #Heat conduction equation
    type = HeatConduction
    variable = T
  [../]
  [./TensorMechanics] #Action that creates equations for disp_x and disp_y
    displacements = 'disp_x disp_y'
  [../]
  [./Q_function] #Heat generation term
    type = BodyForce
    variable = T
    value = 1
    function = 0.8e-9*t
  [../]
[]

[AuxKernels]
  [./radial_stress] #Calculates radial stress from cartesian
    type = CylindricalRankTwoAux
    variable = radial_stress
    rank_two_tensor = stress
    index_j = 0
    index_i = 0
    center_point = '0 0 0'
  [../]
  [./hoop_stress] #Calculates hoop stress from cartesian
    type = CylindricalRankTwoAux
    variable = hoop_stress
    rank_two_tensor = stress
    index_j = 1
    index_i = 1
    center_point = '0 0 0'
  [../]
[]

[BCs]
  [./outer_T] #Temperature on outer edge is fixed at 800K
    type = DirichletBC
    variable = T
    boundary = 1
    value = 800
  [../]
  [./outer_x] #Displacements in the x-direction are fixed in the center
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]
  [./outer_y] #Displacements in the y-direction are fixed in the center
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0
  [../]
[]

[Materials]
  [./thcond] #Thermal conductivity is set to 5 W/mK
    type = GenericConstantMaterial
    block = 1
    prop_names = 'thermal_conductivity'
    prop_values = '5e-6'
  [../]
  [./iso_C] #Sets isotropic elastic constants
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '2.15e5 0.74e5'
    block = 1
  [../]
  [./strain] #We use small deformation mechanics
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y'
    block = 1
    eigenstrain_names = eigenstrain
  [../]
  [./stress] #We use linear elasticity
    type = ComputeLinearElasticStress
    block = 1
  [../]
  [./thermal_strain]
    type= ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-6
    temperature = T
    stress_free_temperature = 273
    block = 1
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  num_steps = 10
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 101'
  l_max_its = 30
  nl_max_its = 10
  nl_abs_tol = 1e-9
  l_tol = 1e-04
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/phase_field/test/tests/initial_conditions/BimodalInverseSuperellipsoidsIC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c]
    type = BimodalInverseSuperellipsoidsIC
    variable = c
    x_positions = '25.0'
    y_positions = '25.0'
    z_positions = '0.0'
    as = '20.0'
    bs = '20.0'
    cs = '1'
    ns = '3.5'
    npart = 8
    invalue = 1.0
    outvalue = -0.8
    nestedvalue = -1.5
    int_width = 0.0
    large_spac = 5
    small_spac = 2
    small_a = 3
    small_b = 3
    small_c = 3
    small_n = 2
    size_variation_type = none
    numtries = 10000
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 20
  l_tol = 1.0e-4
  nl_max_its = 40
  nl_rel_tol = 1e-9

  start_time = 0.0
  num_steps = 1
  dt = 2.0
[]

[Outputs]
  exodus = false
  [./out]
    type = Exodus
    refinements = 2
  [../]
[]

modules/phase_field/test/tests/misc/timestepmaterial.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 1
[]

[Materials]
  [./time]
    type = TimeStepMaterial
    outputs = exodus
  [../]
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Executioner]
  type = Transient
  num_steps = 6

  [./TimeStepper]
    type = TimeSequenceStepper
    time_sequence = '4 8 15 16 23 42'
  [../]
[]

[Outputs]
  exodus = true
  execute_on = timestep_end
[]

test/tests/outputs/intervals/no_output.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./exodus]
    type = Exodus
    execute_on = none
  [../]
[]

test/tests/outputs/vtk/vtk_serial.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  vtk = true
[]

modules/porous_flow/test/tests/jacobian/mass03.i

# 1phase
# vanGenuchten, constant-bulk density, constant porosity, 3components
# unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./mass_frac_comp0]
  [../]
  [./mass_frac_comp1]
  [../]
[]

[ICs]
  [./pp]
    type = RandomIC
    variable = pp
    min = -1
    max = 0
  [../]
  [./mass_frac_comp0]
    type = RandomIC
    variable = mass_frac_comp0
    min = 0
    max = 0.3
  [../]
  [./mass_frac_comp1]
    type = RandomIC
    variable = mass_frac_comp1
    min = 0
    max = 0.3
  [../]
[]

[Kernels]
  [./mass_comp0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./masscomp1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = mass_frac_comp0
  [../]
  [./masscomp2]
    type = PorousFlowMassTimeDerivative
    fluid_component = 2
    variable = mass_frac_comp1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp mass_frac_comp0 mass_frac_comp1'
    number_fluid_phases = 1
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
    s_scale = 0.9
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'mass_frac_comp0 mass_frac_comp1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 2
[]

[Outputs]
  exodus = false
[]

test/tests/auxkernels/solution_aux/solution_aux_multi_err.i

[Mesh]
  file = cubesource.e
  # This test uses SolutionUserObject which doesn't work with DistributedMesh.
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
  [./en]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./nn]
    type = SolutionAux
    solution = soln
    variable = nn
    scale_factor = 2.0
    #from_variable = source_nodal
    #add_factor = -10teg
  [../]
  [./en]
    type = SolutionAux
    solution = soln
    variable = en
    scale_factor = 2.0
    #from_variable = source_nodal
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = cubesource_added.e
    system_variables = 'source_nodal nodal_10'
    timestep = 2
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]

[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 50
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/except1.i

# checking for exception error messages
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = x_disp
    boundary = front
    value = 8E-6
  [../]
  [./topy]
    type = DirichletBC
    variable = y_disp
    boundary = front
    value = 6E-6
  [../]
  [./topz]
    type = DirichletBC
    variable = z_disp
    boundary = front
    value = 1E-6
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.55
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 0
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-3
  [../]
[]
[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-3
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = except
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial1_small_strain.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  # back = zmin
  # front = zmax
  # bottom = ymin
  # top = ymax
  # left = xmin
  # right = xmax
  [./xmin_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = '0'
  [../]
  [./ymin_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = '0'
  [../]
  [./zmin_zzero]
    type = DirichletBC
    variable = disp_z
    boundary = 'back'
    value = '0'
  [../]
  [./zmax_disp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front'
    function = '-1E-3*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./mc_int]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10E6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0
    value_residual = 0.6981317 # 40deg
    rate = 10000
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 0
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-10
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '5.77E10 3.85E10' # young = 100Gpa, poisson = 0.3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-10
    plastic_models = mc
    max_NR_iterations = 1000
    debug_fspb = crash
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]


[Executioner]
  end_time = 0.5
  dt = 0.05
  solve_type = NEWTON
  type = Transient

  line_search = 'none'
  nl_rel_tol = 1E-10
  l_tol = 1E-3
  l_max_its = 200
  nl_max_its = 10

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]



[Outputs]
  file_base = uni_axial1_small_strain
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/richards/test/tests/dirac/bh07.i

[Mesh]
  type = FileMesh
  file = bh07_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1000 10000'
    x = '100 1000'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[BCs]
  [./fix_outer]
    type = DirichletBC
    boundary = perimeter
    variable = pressure
    value = 1E7
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh07.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    re_constant = 0.1594
    character = 2
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
    execute_on = 'initial timestep_end'
  [../]

  [./fluid_mass]
    type = RichardsMass
    variable = pressure
    execute_on = 'initial timestep_end'
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E7
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-11 0 0  0 1E-11 0  0 0 1E-11'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1000
  solve_type = NEWTON

  [./TimeStepper]
    # get only marginally better results for smaller time steps
    type = FunctionDT
    function = dts
  [../]

[]

[Outputs]
  file_base = bh07
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

modules/combined/test/tests/contact/pressurePenalty.i


[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = pressure.e
[]


[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_yy'
  []
[]

[Contact]
  [./m20_s10]
    master = 20
    slave = 10
    penalty = 1e8
    formulation = penalty
    tangential_tolerance = 1e-3
    tension_release = -1
    system = Constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 5
    value = 0.0
  [../]

  [./Pressure]
    [./press]
      boundary = 7
      factor = 1e3
    [../]
  [../]

  [./down]
    type = DirichletBC
    variable = disp_y
    boundary = 8
    value = -2e-3
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.0
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-9

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/iterative/iterative.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = Exodus
    nonlinear_residual_dt_divisor = 100
    linear_residual_dt_divisor = 100
    start_time = 1.8
    end_time = 1.85
    execute_on = 'nonlinear linear timestep_end'
  [../]
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer/errors/master_num_parameters_wrong.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_left uniform_right'
    execute_on = 'initial timestep_end'
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value BCs/right/value'
    to_control = 'stochastic'
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

modules/tensor_mechanics/test/tests/dynamics/prescribed_displacement/3D_QStatic_1_Ramped_Displacement_with_gravity.i

# One 3D element under ramped displacement loading.
#
# loading in z direction:
# time : 0.0 0.1  0.2  0.3
# disp : 0.0 0.0 -0.01 -0.01

# Gravity is applied in y direction. To equilibrate the system
# under gravity, a static analysis is run in the first time step
# by turning off the inertial terms. (see controls block and
# DynamicTensorMechanics block).

# Result: The displacement at the top node in the z direction should match
# the prescribed displacement. Also, the z acceleration should
# be two triangular pulses, one peaking at 0.1 and another peaking at
# 0.2.

# The y displacement would be offset by the gravity displacement.
# Also the y acceleration and velocity should be zero until the loading in
# the z direction starts (i.e, until 0.1s)

# Note: The time step used in the displacement data file should match
# the simulation time step (dt and dtmin in the Executioner block).

[Mesh]
  type = GeneratedMesh
  dim = 3 # Dimension of the mesh
  nx = 1 # Number of elements in the x direction
  ny = 1 # Number of elements in the y direction
  nz = 1 # Number of elements in the z direction
  xmin = 0.0
  xmax = 1
  ymin = 0.0
  ymax = 1
  zmin = 0.0
  zmax = 1
  allow_renumbering = false # So NodalVariableValue can index by id
[]

[Variables] # variables that are solved
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables] # variables that are calculated for output
  [./accel_x]
  [../]
  [./vel_x]
  [../]
  [./accel_y]
  [../]
  [./vel_y]
  [../]
  [./accel_z]
  [../]
  [./vel_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./DynamicTensorMechanics] # zeta*K*vel + K * disp
    displacements = 'disp_x disp_y disp_z'
    zeta = 0.000025
    static_initialization = true #turns off rayliegh damping for the first time step to stabilize system under gravity
  [../]
  [./inertia_x] # M*accel + eta*M*vel
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25 # Newmark time integration
    gamma = 0.5 # Newmark time integration
    eta = 19.63
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
    eta = 19.63
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
    eta = 19.63
  [../]
  [./gravity]
    type = Gravity
    variable = disp_y
    value = -9.81
  [../]
[]

[AuxKernels]
  [./accel_x] # Calculates and stores acceleration at the end of time step
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x] # Calculates and stores velocity at the end of the time step
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Functions]
  [./displacement_front]
    type = PiecewiseLinear
    data_file = 'displacement.csv'
    format = columns
  [../]
[]

[BCs]
  [./prescribed_displacement]
    type = PresetDisplacement
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    boundary = front
    function = displacement_front
  [../]
  [./anchor_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./anchor_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./anchor_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    youngs_modulus = 325e6 #Pa
    poissons_ratio = 0.3
    type = ComputeIsotropicElasticityTensor
    block = 0
  [../]
  [./strain]
    #Computes the strain, assuming small strains
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    #Computes the stress, using linear elasticity
    type = ComputeLinearElasticStress
    block = 0
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = density
    prop_values = 2000 #kg/m3
  [../]
[]

[Controls] # turns off inertial terms for the first time step
  [./period0]
    type = TimePeriod
    disable_objects = '*/vel_x */vel_y */vel_z */accel_x */accel_y */accel_z */inertia_x */inertia_y */inertia_z'
    start_time = 0.0
    end_time = 0.1 # dt used in the simulation
  [../]
[../]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 3.0
  l_tol = 1e-6
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  dt = 0.1
  timestep_tolerance = 1e-6
[]

[Postprocessors] # These quantites are printed to a csv file at every time step
  [./_dt]
    type = TimestepSize
  [../]
  [./accel_6x]
    type = NodalVariableValue
    nodeid = 6
    variable = accel_x
  [../]
  [./accel_6y]
    type = NodalVariableValue
    nodeid = 6
    variable = accel_y
  [../]
  [./accel_6z]
    type = NodalVariableValue
    nodeid = 6
    variable = accel_z
  [../]
  [./vel_6x]
    type = NodalVariableValue
    nodeid = 6
    variable = vel_x
  [../]
  [./vel_6y]
    type = NodalVariableValue
    nodeid = 6
    variable = vel_y
  [../]
  [./vel_6z]
    type = NodalVariableValue
    nodeid = 6
    variable = vel_z
  [../]
  [./disp_6x]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_6y]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./disp_6z]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_z
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
[]

modules/phase_field/test/tests/KKS_system/kks_example_offset.i

#
# KKS toy problem in the split form
# This has an offset in the minima of the free energies so there will be a shift
# in equilibrium composition

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  nz = 0
  xmin = -2.5
  xmax = 2.5
  ymin = -2.5
  ymax = 2.5
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[AuxVariables]
  [./Fglobal]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Variables]
  # order parameter
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]

  # hydrogen concentration
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]

  # chemical potential
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]

  # hydrogen phase concentration (matrix)
  [./cm]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
  # hydrogen phase concentration (delta phase)
  [./cd]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[ICs]
  [./eta]
    variable = eta
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 1.5
    invalue = 0.2
    outvalue = 0.1
    int_width = 0.75
  [../]
  [./c]
    variable = c
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 1.5
    invalue = 0.6
    outvalue = 0.4
    int_width = 0.75
  [../]
[]


[BCs]
  [./Periodic]
    [./all]
      variable = 'eta w c cm cd'
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  # Free energy of the matrix
  [./fm]
    type = DerivativeParsedMaterial
    f_name = fm
    args = 'cm'
    function = '(0.1-cm)^2'
  [../]

  # Free energy of the delta phase
  [./fd]
    type = DerivativeParsedMaterial
    f_name = fd
    args = 'cd'
    function = '(0.9-cd)^2+0.5'
  [../]

  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'M   L   kappa'
    prop_values = '0.7 0.7 0.4  '
  [../]
[]

[Kernels]
  # full transient
  active = 'PhaseConc ChemPotVacancies CHBulk ACBulkF ACBulkC ACInterface dcdt detadt ckernel'

  # enforce c = (1-h(eta))*cm + h(eta)*cd
  [./PhaseConc]
    type = KKSPhaseConcentration
    ca       = cm
    variable = cd
    c        = c
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotVacancies]
    type = KKSPhaseChemicalPotential
    variable = cm
    cb       = cd
    fa_name  = fm
    fb_name  = fd
  [../]

  #
  # Cahn-Hilliard Equation
  #
  [./CHBulk]
    type = KKSSplitCHCRes
    variable = c
    ca       = cm
    fa_name  = fm
    w        = w
  [../]

  [./dcdt]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./ckernel]
    type = SplitCHWRes
    mob_name = M
    variable = w
  [../]

  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = fm
    fb_name  = fd
    args     = 'cm cd'
    w        = 0.4
  [../]
  [./ACBulkC]
    type = KKSACBulkC
    variable = eta
    ca       = cm
    cb       = cd
    fa_name  = fm
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = kappa
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[AuxKernels]
  [./GlobalFreeEnergy]
    variable = Fglobal
    type = KKSGlobalFreeEnergy
    fa_name = fm
    fb_name = fd
    w = 0.4
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pctype -sub_pc_type -sub_pc_factor_shift_type -pc_factor_shift_type'
  petsc_options_value = ' asm    lu          nonzero                    nonzero'

  l_max_its = 100
  nl_max_its = 100
  num_steps = 3

  dt = 0.1
[]

#
# Precondition using handcoded off-diagonal terms
#
[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]


[Outputs]
  file_base = kks_example_offset
  exodus = true
[]

test/tests/multiapps/grid-sequencing/vi-coarse.i

l=10
nx=40
num_steps=2

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmax = ${l}
  nx = ${nx}
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [bounds][]
[]

[Bounds]
  [bounds]
    type = BoundsAux
    variable = bounds
    bounded_variable = u
    upper = ${l}
    lower = 0
  []
[]

[ICs]
  [u]
    type = FunctionIC
    variable = u
    function = 'x'
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = Diffusion
    variable = u
  []
  [ffn]
    type = BodyForce
    variable = u
    function = 'if(x<5,-1,1)'
  []
[]

[BCs]
  [left]
    type = DirichletBC
    boundary = left
    value = 0
    variable = u
  []
  [right]
    type = DirichletBC
    boundary = right
    value = ${l}
    variable = u
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  num_steps = ${num_steps}
  solve_type = NEWTON
  dtmin = 1
  petsc_options = '-snes_vi_monitor'
  petsc_options_iname = '-snes_max_linear_solve_fail -ksp_max_it -pc_type -sub_pc_factor_levels -snes_linesearch_type -snes_type'
  petsc_options_value = '0                           30          asm      16                    basic                 vinewtonrsls'
[]

[Outputs]
  exodus = true
  [csv]
    type = CSV
    execute_on = 'nonlinear timestep_end'
  []
  [dof]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Debug]
  show_var_residual_norms = true
[]

[Postprocessors]
  active = 'upper_violations lower_violations'
  [upper_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = ${fparse 10+1e-8}
    comparator = 'greater'
  []
  [lower_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = -1e-8
    comparator = 'less'
  []
  [nls]
    type = NumNonlinearIterations
  []
  [cum_nls]
    type = CumulativeValuePostprocessor
    postprocessor = nls
  []
[]

[MultiApps]
  [./coarser]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_begin
    positions = '0 0 0'
    input_files = vi-coarser.i
  [../]
[]

[Transfers]
  [./mesh_function_begin]
    type = MultiAppMeshFunctionTransfer
    direction = from_multiapp
    multi_app = coarser
    source_variable = u
    variable = u
    execute_on = timestep_begin
  [../]
[]

modules/tensor_mechanics/test/tests/weak_plane_tensile/small_deform_hard_cubic.i

# Checking evolution tensile strength for cubic hardening
# A single element is stretched by 1E-6*t in z direction, and
# the yield-surface evolution is mapped out

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = x_disp
    boundary = front
    value = 0
  [../]
  [./topy]
    type = DirichletBC
    variable = y_disp
    boundary = front
    value = 0
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = front
    function = 1E-6*t
  [../]
[]

[AuxVariables]
  [./wpt_internal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./wpt_internal]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = wpt_internal
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./wpt_internal]
    type = PointValue
    point = '0 0 0'
    variable = wpt_internal
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningCubic
    value_0 = 10
    value_residual = 4
    internal_limit = 0.000003
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wpt
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-11
  [../]
[]


[Executioner]
  end_time = 4
  dt = 0.5
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard_cubic
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/2D_different_planes/planestrain_jacobian_testing_yz.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = square_yz_plane.e
[]

[Variables]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./plane_strain]
    block = 1
    strain = SMALL
    out_of_plane_direction = x
    planar_formulation = PLANE_STRAIN
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.0
    youngs_modulus = 1
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-ksp_type -pc_type -snes_type'
  petsc_options_value = 'bcgs bjacobi test'

  end_time = 1.0
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform9.i

# Using CappedMohrCoulomb with tensile failure only
# A single unit element is stretched in a complicated way
# that the trial stress is
#
#      1.16226      -0.0116587       0.0587872
#     -0.0116587         1.12695       0.0779428
#      0.0587872       0.0779428        0.710169
#
# This has eigenvalues
# la = {0.68849, 1.14101, 1.16987}
# and eigenvectors
#
# {-0.125484, -0.176871, 0.976202}
# {-0.0343704, -0.982614, -0.182451}
# {0.9915, -0.0564471, 0.117223}
#
# The tensile strength is 0.5 and Young=1 and Poisson=0.25.
# Using smoothing_tol=0.01, the return-map algorithm should
# return to, approximately, stress_I=stress_II=0.5.  This
# is a reduction of 0.66, so stress_III is approximately
# 0.68849 - v * 0.66 * 2 = 0.68849 - 0.25 * 0.66 * 2 = 0.36.
#
# E_22 = E(1-v)/(1+v)/(1-2v) = 1.2, and E_02 = E_22 v/(1-v)
# gamma_shear = ((smax-smin)^trial - (smax-smin)) / (E_22 - E_02)
# = (1-2v) * (smax^trial - smax) / (E_22(1 - 2v)/(1-v))
# = (1 - v) * (smax^trial - smax) / E_22
# Using psi = 30deg, sin(psi) = 1/2
# the shear correction to the tensile internal parameter is
# gamma_shear (E_22 + E_20) sin(psi) = gamma_shear E_22 sin(psi) / (1 - v)
# = gamma_shear E_22 / (1 - v) / 2
# Then the tensile internal parameter is
# (1 - v) * (reduction_of_(max+min)_principal - gamma_shear * E_22 / (1-v) / 2) / E_22
# = (1-v)(1+2v)(smax^trial - smax)/E_22 - gamma_shear / 2
# = 0.41 (approximately)
#
# The final stress is
#
# {0.498, -0.003, 0.017},
# {-0.003, 0.495, 0.024},
# {0.017, 0.024,  0.367}

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = finite
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '3*x+2*y+z'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '3*x-4*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = 'x-2*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.25
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.001
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform9
  csv = true
[]

modules/combined/test/tests/internal_volume/rz_displaced_quad8.i

#
# Volume Test
#
# This test is designed to compute the volume of a space when displacements
#   are imposed.
#
# The mesh is composed of one block (1) with two elements.  The mesh is
#   such that the initial volume is 1.  One element face is displaced to
#   produce a final volume of 2.
#
#     r1
#   +----+   -
#   |    |   |
#   +----+   h    V1 = pi * h * r1^2
#   |    |   |
#   +----+   -
#
#   becomes
#
#   +----+
#   |     \
#   +------+      v2 = pi * h/2 * ( r2^2 + 1/3 * ( r2^2 + r2*r1 + r1^2 ) )
#   |      |
#   +------+
#      r2
#
#   r1 = 1
#   r2 = 1.5380168369562588
#   h  = 1/pi
#
#  Note:  Because the InternalVolume PP computes cavity volumes as positive,
#         the volumes reported are negative.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = meshes/rz_displaced_quad8.e
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./disp_x]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.5380168369562588'
  [../]
  [./disp_x2]
    type = PiecewiseLinear
    scale_factor = 0.5
    x = '0. 1.'
    y = '0. 0.5380168369562588'
  [../]
[]

[Variables]
  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]

  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    volumetric_locking_correction = false
    decomposition_method = EigenSolution
    incremental = true
    strain = FINITE
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./x]
    type = FunctionDirichletBC
    boundary = 3
    variable = disp_x
    function = disp_x
  [../]
  [./x2]
    type = FunctionDirichletBC
    boundary = 4
    variable = disp_x
    function = disp_x2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 2
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/porous_flow/test/tests/chemistry/except5.i

# Exception test.
# Incorrect number of equilibrium constant

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_equilibrium = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E2
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'a b'
    num_reactions = 2
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    secondary_activity_coefficients = '1 1'
    reactions = '2 0
                 1 1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer/monte_carlo.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_left uniform_right'
    execute_on = INITIAL
  []
[]

[MultiApps]
  [sub]
    type = SamplerFullSolveMultiApp
    input_files = sub.i
    sampler = sample
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
    execute_on = INITIAL
    check_multiapp_execute_on = false
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

test/tests/outputs/hide_vector_pp/hide_vector_pp.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./pp]
    type = NumElems
    outputs = csv
  [../]
[]

[VectorPostprocessors]
  [./vpp]
    type = LineValueSampler
    variable = u
    start_point = '0 0 0'
    end_point = '1 1 0'
    num_points = 10
    sort_by = id
    outputs = 'test'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
  [./test]
    type = CSV
    execute_on = 'FINAL'
  [../]
[]

modules/tensor_mechanics/test/tests/truss/truss_hex_action.i

# This test is designed to check
# whether truss element works well with other multi-dimensional element
# e.g. the hex element in this case, by assigning different block number
# to different types of elements.
[Mesh]
  type = FileMesh
  file = truss_hex.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./axial_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_over_l]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./area]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./react_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./x2]
    type = PiecewiseLinear
    x = '0  1 2 3'
    y = '0 .5 1 1'
  [../]
  [./y2]
    type = PiecewiseLinear
    x = '0 1  2 3'
    y = '0 0 .5 1'
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./fixx2]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]
  [./fixz2]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]

  [./fixDummyHex_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1000
    value = 0
  [../]

  [./fixDummyHex_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1000
    value = 0
  [../]

  [./fixDummyHex_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1000
    value = 0
  [../]
[]

[DiracKernels]
  [./pull]
    type = ConstantPointSource
    value = -25
    point = '0 -2 0'
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./axial_stress]
    type = MaterialRealAux
    block = '1 2'
    property = axial_stress
    variable = axial_stress
  [../]
  [./e_over_l]
    type = MaterialRealAux
    block = '1 2'
    property = e_over_l
    variable = e_over_l
  [../]
  [./area1]
    type = ConstantAux
    block = 1
    variable = area
    value = 1.0
    execute_on = 'initial timestep_begin'
  [../]
  [./area2]
    type = ConstantAux
    block = 2
    variable = area
    value = 0.25
    execute_on = 'initial timestep_begin'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'jacobi   101'

  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10

  dt = 1
  num_steps = 1
  end_time = 1
[]

[Kernels]
  [./TensorMechanics]
    block = 1000
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Modules/TensorMechanics/LineElementMaster]
   [./block]
     truss = true
     displacements = 'disp_x disp_y disp_z'

     area = area

     block = '1 2'
     save_in = 'react_x react_y react_z'
   [../]
[]

[Materials]
   [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1000
    youngs_modulus = 1e6
    poissons_ratio = 0
  [../]
  [./strain]
    type = ComputeSmallStrain
    block = 1000
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 1000
  [../]
  [./linelast]
    type = LinearElasticTruss
    block = '1 2'
    displacements = 'disp_x disp_y disp_z'
    youngs_modulus = 1e6
  [../]
[]

[Outputs]
  file_base = 'truss_hex_out'
  exodus = true
[]

test/tests/time_steppers/time_adaptive/time-adaptive.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 20
  ny = 20
  elem_type = QUAD4
[]

[GlobalParams]
  slope = 10
  t_jump = 2
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = TEIC
    [../]
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = TEJumpFFN
    variable = u
  [../]
[]

[BCs]
  [./all]
    type = TEJumpBC
    variable = u
    boundary = '0 1 2 3'
  [../]
[]

[Executioner]
  type = Transient

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.5
  [../]

  solve_type = 'PJFNK'

  nl_abs_tol = 1e-15

  start_time = 0.0
  end_time = 5
  num_steps = 500000

  dtmin = 0.4
  dtmax = 0.9
[]

[Outputs]
  file_base = out
  csv = true
  exodus = true
[]

test/tests/postprocessors/num_dofs/num_dofs.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  nz = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./u_aux]
    order = FIRST
    family = LAGRANGE
  [../]
  [./v_aux]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 1
  solve_type = PJFNK
[]

[Adaptivity]
  steps = 1
  marker = box
  max_h_level = 2
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = do_nothing
      type = BoxMarker
    [../]
  [../]
[]

[Postprocessors]
  [./num_dofs_nl]
    type = NumDOFs
    system = NL
  [../]
  [./num_dofs_aux]
    type = NumDOFs
    system = AUX
  [../]

  # default
  [./num_dofs_all]
    type = NumDOFs
    system = ALL
  [../]
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/except1.i

# checking for exception error messages
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 45
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 1
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = except1
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/thermal_elastic/ad-thermal_elastic.i

# Patch Test

# This test is designed to compute constant xx, yy, zz, xy, yz, and xz
#  stress on a set of irregular hexes.  The mesh is composed of one
#  block with seven elements.  The elements form a unit cube with one
#  internal element.  There is a nodeset for each exterior node.

# The cube is displaced by 1e-6 units in x, 2e-6 in y, and 3e-6 in z.
#  The faces are sheared as well (1e-6, 2e-6, and 3e-6 for xy, yz, and
#  zx).  This gives a uniform strain/stress state for all six unique
#  tensor components.  This displacement is again applied in the second
#  step.

# With Young's modulus at 1e6 and Poisson's ratio at 0, the shear
#  modulus is 5e5 (G=E/2/(1+nu)).  Therefore, for the mechanical strain,
#
#  stress xx = 1e6 * 1e-6 = 1
#  stress yy = 1e6 * 2e-6 = 2
#  stress zz = 1e6 * 3e-6 = 3
#  stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 5e5 * 2e-6 / 2 = 1
#  stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5

# Young's modulus is a function of temperature for this test.  The
#  temperature changes from 100 to 500.  The Young's modulus drops
#  due to that temperature change from 1e6 to 6e5.

# Poisson's ratio also is a function of temperature and changes from
#  0 to 0.25.

# At the end of the temperature ramp, E=6e5 and nu=0.25.  This gives
#  G=2.4e=5.  lambda=E*nu/(1+nu)/(1-2*nu)=2.4E5.  The final stress
#  is therefore

#  stress xx = 2.4e5 * 12e-6 + 2*2.4e5*2e-6 = 3.84
#  stress yy = 2.4e5 * 12e-6 + 2*2.4e5*4e-6 = 4.80
#  stress zz = 2.4e5 * 12e-6 + 2*2.4e5*6e-6 = 5.76
#  stress xy = 2 * 2.4e5 * 2e-6 / 2 = 0.48
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 2.4e5 * 4e-6 / 2 = 0.96
#  stress xz = 2 * 2.4e5 * 6e-6 / 2 = 1.44

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = thermal_elastic.e
[]

[Functions]
  [./ramp1]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 1e-6
  [../]
  [./ramp2]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 2e-6
  [../]
  [./ramp3]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 3e-6
  [../]
  [./ramp4]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 4e-6
  [../]
  [./ramp6]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 2.'
    scale_factor = 6e-6
  [../]
  [./tempFunc]
    type = PiecewiseLinear
    x = '0     1     2'
    y = '100.0 100.0 500.0'
  [../]
[]

[Variables]
  [./temp]
    initial_condition = 100.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_xz stress_yz'
    strain = FINITE
    use_automatic_differentiation = true
  [../]
[]

[Kernels]
  [./heat]
    type = ADDiffusion
    variable = temp
  [../]
[]

[BCs]
  [./node1_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./node1_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = ramp2
  [../]
  [./node1_z]
    type = ADFunctionDirichletBC
    variable = disp_z
    boundary = 1
    function = ramp3
  [../]

  [./node2_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = ramp1
  [../]
  [./node2_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = ramp2
  [../]
  [./node2_z]
    type = ADFunctionDirichletBC
    variable = disp_z
    boundary = 2
    function = ramp6
  [../]

  [./node3_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 3
    function = ramp1
  [../]
  [./node3_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./node3_z]
    type = ADFunctionDirichletBC
    variable = disp_z
    boundary = 3
    function = ramp3
  [../]

  [./node4_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./node4_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
  [./node4_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]

  [./node5_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 5
    function = ramp1
  [../]
  [./node5_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = ramp4
  [../]
  [./node5_z]
    type = ADFunctionDirichletBC
    variable = disp_z
    boundary = 5
    function = ramp3
  [../]

  [./node6_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 6
    function = ramp2
  [../]
  [./node6_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = 6
    function = ramp4
  [../]
  [./node6_z]
    type = ADFunctionDirichletBC
    variable = disp_z
    boundary = 6
    function = ramp6
  [../]

  [./node7_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 7
    function = ramp2
  [../]
  [./node7_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = 7
    function = ramp2
  [../]
  [./node7_z]
    type = ADFunctionDirichletBC
    variable = disp_z
    boundary = 7
    function = ramp3
  [../]

  [./node8_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 8
    function = ramp1
  [../]
  [./node8_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = 8
    function = ramp2
  [../]
  [./node8_z]
    type = DirichletBC
    variable = disp_z
    boundary = 8
    value = 0.0
  [../]

  [./temp]
    type = ADFunctionDirichletBC
    variable = temp
    boundary = '10 12'
    function = tempFunc
  [../]
[]

[Materials]
  [./youngs_modulus]
    type = ADPiecewiseLinearInterpolationMaterial
    x = '100 500'
    y = '1e6 6e5'
    property = youngs_modulus
    variable = temp
  [../]
  [./poissons_ratio]
    type = ADPiecewiseLinearInterpolationMaterial
    x = '100 500'
    y = '0   0.25'
    property = poissons_ratio
    variable = temp
  [../]

  [./elasticity_tensor]
    type = ADComputeVariableIsotropicElasticityTensor
    youngs_modulus = youngs_modulus
    poissons_ratio = poissons_ratio
  [../]

  [./stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-9

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/tensile_update6.i

# Tensile, update version, with strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.
# Returns to the plane of tensile yield

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 0.5E3
    shear_modulus = 1.0E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-1 0.1 0.2  0.1 15 -0.3  0.2 -0.3 0'
    eigenstrain_name = ini_stress
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/rom_stress_update/verification.i

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temperature]
  [../]
[]

[AuxKernels]
  [./temp_aux]
    type = FunctionAux
    variable = temperature
    function = temp_fcn
    execute_on = 'initial timestep_begin'
  [../]
[]

[Functions]
  [./rhom_fcn]
    type = PiecewiseConstant
    data_file = ss316_verification_data.csv
    x_index_in_file = 0
    y_index_in_file = 1
    format = columns
    xy_in_file_only = false
    direction = right
  [../]
  [./rhoi_fcn]
    type = PiecewiseConstant
    data_file = ss316_verification_data.csv
    x_index_in_file = 0
    y_index_in_file = 2
    format = columns
    xy_in_file_only = false
    direction = right
  [../]
  [./vmJ2_fcn]
    type = PiecewiseConstant
    data_file = ss316_verification_data.csv
    x_index_in_file = 0
    y_index_in_file = 3
    format = columns
    xy_in_file_only = false
    direction = right
  [../]
  [./evm_fcn]
    type = PiecewiseConstant
    data_file = ss316_verification_data.csv
    x_index_in_file = 0
    y_index_in_file = 4
    format = columns
    xy_in_file_only = false
    direction = right
  [../]
  [./temp_fcn]
    type = PiecewiseConstant
    data_file = ss316_verification_data.csv
    x_index_in_file = 0
    y_index_in_file = 5
    format = columns
    xy_in_file_only = false
    direction = right
  [../]

  [./rhom_soln_fcn]
    type = PiecewiseConstant
    data_file = ss316_verification_data.csv
    x_index_in_file = 0
    y_index_in_file = 7
    format = columns
    xy_in_file_only = false
    direction = right
  [../]
  [./rhoi_soln_fcn]
    type = PiecewiseConstant
    data_file = ss316_verification_data.csv
    x_index_in_file = 0
    y_index_in_file = 8
    format = columns
    xy_in_file_only = false
    direction = right
  [../]
  [./creep_rate_soln_fcn]
    type = PiecewiseConstant
    data_file = ss316_verification_data.csv
    x_index_in_file = 0
    y_index_in_file = 10
    format = columns
    xy_in_file_only = false
    direction = right
  [../]

  [./rhom_diff_fcn]
    type = ParsedFunction
    vars = 'rhom_soln rhom'
    vals = 'rhom_soln rhom'
    value = 'abs(rhom_soln - rhom) / rhom_soln'
  [../]
  [./rhoi_diff_fcn]
    type = ParsedFunction
    vars = 'rhoi_soln rhoi'
    vals = 'rhoi_soln rhoi'
    value = 'abs(rhoi_soln - rhoi) / rhoi_soln'
  [../]
  [./creep_rate_diff_fcn]
    type = ParsedFunction
    vars = 'creep_rate_soln creep_rate'
    vals = 'creep_rate_soln creep_rate'
    value = 'abs(creep_rate_soln - creep_rate) / creep_rate_soln'
  [../]
[]


[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'vonmises_stress'
    use_automatic_differentiation = true
  [../]
[]

[BCs]
  [./symmx]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmy]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmz]
    type = ADDirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./pressure_x]
    type = ADPressure
    variable = disp_x
    component = 0
    boundary = right
    function = vmJ2_fcn
    constant = 0.5e6
  [../]
  [./pressure_y]
    type = ADPressure
    variable = disp_y
    component = 1
    boundary = top
    function = vmJ2_fcn
    constant = -0.5e6
  [../]
  [./pressure_z]
    type = ADPressure
    variable = disp_z
    component = 2
    boundary = front
    function = vmJ2_fcn
    constant = -0.5e6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e11
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ADComputeMultipleInelasticStress
    inelastic_models = rom_stress_prediction
  [../]
  [./rom_stress_prediction]
    type = SS316HLAROMANCEStressUpdateTest
    temperature = temperature
    effective_inelastic_strain_name = effective_creep_strain
    internal_solve_full_iteration_history = true
    apply_strain = false
    outputs = all
    immobile_dislocation_density_forcing_function = rhoi_fcn
    mobile_dislocation_density_forcing_function = rhom_fcn
    old_creep_strain_forcing_function = evm_fcn
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options = '-snes_ksp_ew -snes_converged_reason -ksp_converged_reason'# -ksp_error_if_not_converged -snes_error_if_not_converged'
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
  line_search = 'none'
  automatic_scaling = true
  compute_scaling_once = false

  nl_abs_tol = 1e-10

  dt = 1e-3
  end_time = 1e-2
[]

[Postprocessors]
  [./effective_strain_avg]
    type = ElementAverageValue
    variable = effective_creep_strain
    outputs = console
  [../]
  [./temperature]
    type = ElementAverageValue
    variable = temperature
    outputs = console
  [../]
  [./rhom]
    type = ElementAverageValue
    variable = mobile_dislocations
  [../]
  [./rhoi]
    type = ElementAverageValue
    variable = immobile_dislocations
  [../]
  [./vonmises_stress]
    type = ElementAverageValue
    variable = vonmises_stress
    outputs = console
  [../]
  [./creep_rate]
    type = ElementAverageValue
    variable = creep_rate
  [../]
  [./rhom_in]
    type = FunctionValuePostprocessor
    function = rhom_fcn
    execute_on = 'TIMESTEP_END initial'
    outputs = console
  [../]
  [./rhoi_in]
    type = FunctionValuePostprocessor
    function = rhoi_fcn
    execute_on = 'TIMESTEP_END initial'
    outputs = console
  [../]
  [./vmJ2_in]
    type = FunctionValuePostprocessor
    function = vmJ2_fcn
    execute_on = 'TIMESTEP_END initial'
    outputs = console
  [../]
  [./rhom_soln]
    type = FunctionValuePostprocessor
    function = rhom_soln_fcn
    outputs = console
  [../]
  [./rhoi_soln]
    type = FunctionValuePostprocessor
    function = rhoi_soln_fcn
    outputs = console
  [../]
  [./creep_rate_soln]
    type = FunctionValuePostprocessor
    function = creep_rate_soln_fcn
    outputs = console
  [../]

  [./rhom_diff]
    type = FunctionValuePostprocessor
    function = rhom_diff_fcn
    outputs = console
  [../]
  [./rhoi_diff]
    type = FunctionValuePostprocessor
    function = rhoi_diff_fcn
    outputs = console
  [../]
  [./creep_rate_diff]
    type = FunctionValuePostprocessor
    function = creep_rate_diff_fcn
    outputs = console
  [../]

  [./rhom_max_diff]
    type = TimeExtremeValue
    postprocessor = rhom_diff
    outputs = console
  [../]
  [./rhoi_max_diff]
    type = TimeExtremeValue
    postprocessor = rhoi_diff
    outputs = console
  [../]
  [./creep_rate_max_diff]
    type = TimeExtremeValue
    postprocessor = creep_rate_diff
    outputs = console
  [../]
[]

[Outputs]
  csv = true
  file_base = 'verification_1e-3_out'
[]

modules/porous_flow/test/tests/fluidstate/brineco2_hightemp.i

# Tests correct calculation of properties in PorousFlowBrineCO2 in the elevated
# temperature regime (T > 110C)

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  temperature = 250
[]

[Variables]
  [./pgas]
    initial_condition = 20e6
  [../]
  [./z]
     initial_condition = 0.2
  [../]
[]

[AuxVariables]
  [./xnacl]
    initial_condition = 0.1
  [../]
  [./pressure_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./pressure_water]
    type = PorousFlowPropertyAux
    variable = pressure_water
    property = pressure
    phase = 0
    execute_on = timestep_end
  [../]
  [./pressure_gas]
    type = PorousFlowPropertyAux
    variable = pressure_gas
    property = pressure
    phase = 1
    execute_on = timestep_end
  [../]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation_water
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./density_water]
    type = PorousFlowPropertyAux
    variable = density_water
    property = density
    phase = 0
    execute_on = timestep_end
  [../]
  [./density_gas]
    type = PorousFlowPropertyAux
    variable = density_gas
    property = density
    phase = 1
    execute_on = timestep_end
  [../]
  [./viscosity_water]
    type = PorousFlowPropertyAux
    variable = viscosity_water
    property = viscosity
    phase = 0
    execute_on = timestep_end
  [../]
  [./viscosity_gas]
    type = PorousFlowPropertyAux
    variable = viscosity_gas
    property = viscosity
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1_water]
    type = PorousFlowPropertyAux
    variable = x1_water
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./x1_gas]
    type = PorousFlowPropertyAux
    variable = x1_gas
    property = mass_fraction
    phase = 1
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./x0_water]
    type = PorousFlowPropertyAux
    variable = x0_water
    property = mass_fraction
    phase = 0
    fluid_component = 0
    execute_on = timestep_end
  [../]
  [./x0_gas]
    type = PorousFlowPropertyAux
    variable = x0_gas
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = timestep_end
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    temperature_unit = Celsius
    xnacl = xnacl
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./density_water]
    type = ElementIntegralVariablePostprocessor
    variable = density_water
  [../]
  [./density_gas]
    type = ElementIntegralVariablePostprocessor
    variable = density_gas
  [../]
  [./viscosity_water]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_water
  [../]
  [./viscosity_gas]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_gas
  [../]
  [./x1_water]
    type = ElementIntegralVariablePostprocessor
    variable = x1_water
  [../]
  [./x0_water]
    type = ElementIntegralVariablePostprocessor
    variable = x0_water
  [../]
  [./x1_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x1_gas
  [../]
  [./x0_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x0_gas
  [../]
  [./sg]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_gas
  [../]
  [./sw]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_water
  [../]
  [./pwater]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_water
  [../]
  [./pgas]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_gas
  [../]
  [./x0mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    phase = '0 1'
  [../]
  [./x1mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = '0 1'
  [../]
[]

[Outputs]
  csv = true
  execute_on = 'TIMESTEP_END'
  perf_graph = false
[]

modules/phase_field/examples/grain_growth/3D_6000_gr.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 180
  ny = 180
  nz = 180
  xmin = 0
  xmax = 180
  ymin = 0
  ymax = 180
  zmin = 0
  zmax = 180
  elem_type = HEX8
[]

[GlobalParams]
  op_num = 28
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    grain_num = 6000 # Number of grains
    rand_seed = 8675 # 301
    coloring_algorithm = jp
  [../]
  [./term]
    type = Terminator
    expression = 'grain_tracker < 218'
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ghost_elements]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halos]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    field_display = UNIQUE_REGION
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
  [../]
  [./ghost_elements]
    type = FeatureFloodCountAux
    variable = ghost_elements
    field_display = GHOSTED_ENTITIES
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
  [../]
  [./halos]
    type = FeatureFloodCountAux
    variable = halos
    field_display = HALOS
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    field_display = VARIABLE_COLORING
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
  [../]
[]

#[BCs]
#  [./Periodic]
#    [./All]
#      auto_direction = 'x y'
#    [../]
#  [../]
#[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500
    wGB = 3 # um
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
    molar_volume = 7.11e-6 #Molar volume in m^3/mol
    length_scale = 1.0e-6
    time_scale = 1.0
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
  [./n_elements]
    type = NumElems
    execute_on = timestep_end
  [../]
  [./n_nodes]
    type = NumNodes
    execute_on = timestep_end
  [../]
  [./DOFs]
    type = NumDOFs
  [../]
  [./grain_tracker]
    type = GrainTracker
    threshold = 0.1
    compute_halo_maps = true
  [../]
[]

#[Preconditioning]
#  [./SMP]
#    type = SMP
#    full = true
#  [../]
#[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK #Preconditioned JFNK (default)
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'asm'
  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-8
  start_time = 0.0
  num_steps = 500
  dt = 0.0002

  [./TimeStepper]
    type = IterationAdaptiveDT
    cutback_factor = 0.9
    dt = 0.0002
    growth_factor = 1.1
    optimal_iterations = 8
  [../]

  #[./Adaptivity]
  #  initial_adaptivity = 4
  #  refine_fraction = 0.6
  #  coarsen_fraction = 0.1
  #  max_h_level = 4
  #  print_changed_info = true
  #[../]
[]

[Outputs]
  nemesis = true
  checkpoint = true
  csv = true
  [./console]
    type = Console
  [../]
[]

modules/solid_mechanics/test/tests/cracking/cracking_rz_exponential.i

#
# Test to exercise the exponential stress release
#
# Stress vs. strain should show a linear relationship until cracking,
#   an exponential stress release, a linear relationship back to zero
#   strain, a linear relationship with the original stiffness in
#   compression and then back to zero strain, a linear relationship
#   back to the exponential curve, and finally further exponential
#   stress release.
#

[Mesh]
  file = cracking_rz_test.e
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Problem]
  coord_type = RZ
[]

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
    scaling = 1e-3
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

[]

[AuxVariables]

  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Functions]
  [./disply]
    type = PiecewiseLinear
    x = '0 1       2  3      4 5       6'
    y = '0 0.00175 0 -0.0001 0 0.00175 0.0035'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]


[AuxKernels]
  [./strain_yy]
    type = MaterialTensorAux
    variable = strain_yy
    tensor = total_strain
    index = 1
  [../]

  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    tensor = stress
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    variable = stress_zz
    tensor = stress
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    variable = stress_xy
    tensor = stress
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    variable = stress_yz
    tensor = stress
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    variable = stress_zx
    tensor = stress
    index = 5
  [../]
[]


[BCs]
  [./pully]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = disply
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./sides]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

[]

[Materials]
  [./fred]
    type = Elastic
    block = 1
    youngs_modulus = 186.5e9
    poissons_ratio = .316
    cracking_stress = 119.3e6
    cracking_release = exponential

    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-ksp_gmres_restart -pc_type'
  petsc_options_value = '101                lu'

  line_search = 'none'
  l_max_its = 100
  l_tol = 1e-6

  nl_max_its = 10
  nl_rel_tol = 1e-10

  nl_abs_tol = 6e-10

  start_time = 0.0
  end_time = 6.0
  dt = 0.005
  dtmin = 0.005
[]

[Postprocessors]
  [./stress_yy]
    type = ElementalVariableValue
    elementid = 0
    variable = stress_yy
  [../]

  [./strain_yy]
    type = ElementalVariableValue
    elementid = 0
    variable = strain_yy
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/chemical_reactions/test/tests/exceptions/missing_sto2.i

# Missing stoichiometric coefficient in CoupledBEEquilibriumSub Kernel

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
  [./c]
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./c_ie]
    type = PrimaryTimeDerivative
    variable = c
  [../]
  [./aeq]
    type = CoupledBEEquilibriumSub
    variable = a
    log_k = 1
    weight = 2
    sto_u = 2
    v = 'b c'
    sto_v = 1
    gamma_v = '2 2'
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = porosity
    prop_values = 0.2
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
[]

modules/richards/test/tests/jacobian_2/jn03.i

# two phase
# unsaturated = true

# gravity = false
# supg = true
# transient = false

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardsfgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn03
  exodus = false
[]

test/tests/adaptivity/interval/adapt_interval.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 6
  dt = 1

  solve_type = 'PJFNK'

[]

[Adaptivity]
  steps = 1
  marker = box
  max_h_level = 2
  interval = 2
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = do_nothing
      type = BoxMarker
    [../]
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking_rz.i

#

[Mesh]
  file = cracking_rz_test.e
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./displ]
    type = PiecewiseLinear
    x = '0 1 2 3  4'
    y = '0 1 0 -1 0'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[BCs]
  [./pull]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = displ
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 4.0e7
    poissons_ratio = 0.0
  [../]
  [./elastic_stress]
    type = ComputeSmearedCrackingStress
    cracking_stress = 1.68e6
    softening_models = abrupt_softening
  [../]
  [./abrupt_softening]
    type = AbruptSoftening
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK


  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101               '


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-2
  l_tol = 1e-5
  start_time = 0.0
  end_time = 0.1
  dt = 0.025
[]

[Outputs]
  exodus = true
[]

test/tests/bcs/periodic/no_add_scalar.i

# Test to make sure that periodic boundaries
# are not applied to scalar variables.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = x
    [../]
  [../]
  [./scalar]
    family = SCALAR
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = x
    [../]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = c
  [../]
  [./diff]
    type = Diffusion
    variable = c
  [../]
[]

[ScalarKernels]
  [./scalar]
    type = ODETimeDerivative
    variable = scalar
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  num_steps = 3
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/fluidstate/brineco2_ic.i

# Tests correct calculation of z (total mass fraction of NCG summed over all
# phases) using the PorousFlowFluidStateIC initial condition. Once z is
# calculated by the initial condition, the thermophysical properties are calculated
# and the resulting gas saturation should be equal to that given in the intial condition

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  temperature_unit = Celsius
[]

[Variables]
  [./pgas]
    initial_condition = 1e6
  [../]
  [./z]
  [../]
[]

[ICs]
  [./z]
    type = PorousFlowFluidStateIC
    saturation = 0.5
    gas_porepressure = pgas
    temperature = 50
    variable = z
    xnacl = 0.1
    fluid_state = fs
  [../]
[]

[AuxVariables]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation_water
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    fluid_state = fs
    capillary_pressure = pc
    xnacl = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./sg]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_gas
    execute_on = 'initial timestep_end'
  [../]
  [./sw]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_water
    execute_on = 'initial timestep_end'
  [../]
  [./z]
    type = ElementIntegralVariablePostprocessor
    variable = z
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  csv = true
[]

modules/functional_expansion_tools/examples/3D_volumetric_Cartesian/main.i

# Basic example coupling a master and sub app in a 3D Cartesian volume.
#
# The master app provides field values to the sub app via Functional Expansions, which then performs
# its calculations. The sub app's solution field values are then transferred back to the master app
# and coupled into the solution of the master app solution.
#
# This example couples Functional Expansions via AuxVariable.
#
# Note: this problem is not light, and may take a few minutes to solve.
[Mesh]
  type = GeneratedMesh
  dim = 3

  xmin = 0.0
  xmax = 10.0
  nx = 15

  ymin = 1.0
  ymax = 11.0
  ny = 25

  zmin = 2.0
  zmax = 12.0
  nz = 35
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = HeatConduction
    variable = m
  [../]
  [./time_diff_m]
    type = HeatConductionTimeDerivative
    variable = m
  [../]
  [./s_in] # Add in the contribution from the SubApp
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[Materials]
  [./Unobtanium]
    type = GenericConstantMaterial
    prop_names =  'thermal_conductivity specific_heat density'
    prop_values = '1.0                  1.0           1.0' # W/(cm K), J/(g K), g/cm^3
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'top bottom left right front back'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3   4   5'
    physical_bounds = '0.0  10.0    1.0 11.0    2.0 12.0'
    x = Legendre
    y = Legendre
    z = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

modules/tensor_mechanics/test/tests/plane_stress/weak_plane_stress_small.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  temperature = temp
  out_of_plane_strain = strain_zz
[]

[Mesh]
  file = square.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./strain_zz]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./nl_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
  [./min_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = min
  [../]
  [./max_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = max
  [../]
[]

[Modules/TensorMechanics/Master]
  [plane_stress]
    planar_formulation = WEAK_PLANE_STRESS
    strain = SMALL
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy'
    eigenstrain_names = eigenstrain
  []
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = nl_strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0     1   100'
    y='0  0.00  0.00'
  [../]
  [./tempfunc]
    type = ParsedFunction
    value = '(1 - x) * t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-06

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/moving_interface/verification/1D_rz_lsdep1mat.i

# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality:                                   quasi-1D
# Coordinate System:                                      rz
# Material Numbers/Types: level set dep 1 material, 2 region
# Element Order:                                         1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
#   A simple transient heat transfer problem in cylindrical coordinates designed
#   with the Method of Manufactured Solutions. This problem was developed to
#   verify XFEM performance in the presence of a moving interface for linear
#   element models that can be exactly evaluated by FEM/Moose. Both the
#   temperature solution and level set function are designed to be linear to
#   attempt to minimize error between the Moose/exact solution and XFEM results.
#   Thermal conductivity is dependent upon the value of the level set function
#   at each timestep.
# Results:
#   The temperature at the left boundary (x=1) exhibits the largest difference
#   between the FEM/Moose solution and XFEM results. We present the XFEM
#   results at this location with 10 digits of precision:
#     Time    Expected Temperature    XFEM Calculated Temperature
#      0.2                  440         440
#      0.4                  480         480.0008131
#      0.6                  520         520.0038333
#      0.8                  560         560.0088286
#      1.0                  600         600.0131612
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 1
  xmin = 1.0
  xmax = 2.0
  ymin = 0.0
  ymax = 0.5
  elem_type = QUAD4
[]

[XFEM]
  qrule = moment_fitting
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
    heal_always = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./heat_cond]
    type = MatDiffusion
    variable = u
    diffusivity = diffusion_coefficient
  [../]
  [./vol_heat_src]
    type = BodyForce
    variable = u
    function = src_func
  [../]
  [./mat_time_deriv]
    type = TestMatTimeDerivative
    variable = u
    mat_prop_value = rhoCp
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    geometric_cut_userobject = 'level_set_cut_uo'
    use_penalty = true
    alpha = 1e5
  [../]
[]

[Functions]
  [./src_func]
    type = ParsedFunction
    value = '10*(-200*x+400) + (1/x)*(310*t - (10/1.02)*x*t - (1/1.02)*t^2)'
  [../]
  [./neumann_func]
    type = ParsedFunction
    value = '((0.05/2.04)*(2.04-x-0.2*t) + 1.5)*200*t'
  [../]
  [./k_func]
    type = ParsedFunction
    value = '(0.05/2.04)*(2.04-x-0.2*t) + 1.5'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = '2.04 - x -0.2*t'
  [../]
[]

[Materials]
  [./mat_time_deriv_prop]
    type = GenericConstantMaterial
    prop_names = 'rhoCp'
    prop_values = 10
  [../]
  [./therm_cond_prop]
    type = GenericFunctionMaterial
    prop_names = 'diffusion_coefficient'
    prop_values = 'k_func'
  [../]
[]

[BCs]
  [./left_u]
    type = FunctionNeumannBC
    variable = u
    boundary = 'left'
    function = neumann_func
  [../]
  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 400
  [../]
[]

[ICs]
  [./u_ic]
    type = ConstantIC
    value = 400
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_tol = 1.0e-6
  nl_max_its = 15
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-9

  start_time = 0.0
  dt = 0.2
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = 'initial timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/richards/test/tests/gravity_head_2/gh16.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    output = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    output = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    output = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    output = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = gh16
  execute_on = 'timestep_end final'
  interval = 100000
  exodus = true
  csv = true
[]

modules/porous_flow/test/tests/dirackernels/bh_except06.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = bh02.bh
    use_mobility = true
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/misc/test/tests/fracture_flow/single.i

# Models fluid advecting down a single fracture sitting at x=0, and 0<=y<=3.
#
[Mesh]
  type = FileMesh
  file = 'single.e'
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u_init]
    type = ConstantIC
    variable = u
    value = 0
  [../]
[]

[BCs]
  [./inj]
    type = DirichletBC
    boundary = 1
    variable = u
    value = 1
  [../]
[]

[Kernels]
  [./matrix_dt]
    type = CoefTimeDerivative
    variable = u
    Coefficient = 0.2  # matrix porosity
    block = 1
  [../]
  [./matrix_diff]
    type = AnisotropicDiffusion
    variable = u
    block = 1
    tensor_coeff = '0.002 0 0   0 0 0   0 0 0'  # matrix porosity * matrix diffusivity
  [../]
  [./fracture_dt]
    type = CoefTimeDerivative
    variable = u
    Coefficient = 0.1  # fracture half-aperture * fracture porosity
    block = 2
  [../]
  [./fracture_advect]
    type = Convection
    variable = u
    block = 2
    velocity = '0 0.08 0' # fracture half-aperture * velocity in fracture
  [../]
[]

[Preconditioning]
  [./standard]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 2e-1
  end_time = 1.0
  solve_type = Newton
  nl_rel_tol = 1E-12
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/dispersion/disp01_heavy.i

# Test dispersive part of PorousFlowDispersiveFlux kernel by setting diffusion
# coefficients to zero. A pressure gradient is applied over the mesh to give a
# uniform velocity. Gravity is set to zero.
# Mass fraction is set to 1 on the left hand side and 0 on the right hand side.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 200
  xmax = 10
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
  compute_enthalpy = false
  compute_internal_energy = false
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
[]

[AuxVariables]
  [./velocity]
    family = MONOMIAL
    order = FIRST
  [../]
[]

[AuxKernels]
  [./velocity]
    type = PorousFlowDarcyVelocityComponent
    variable = velocity
    component = x
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = pic
  [../]
  [./massfrac0]
    type = ConstantIC
    variable = massfrac0
    value = 0
  [../]
[]

[Functions]
  [./pic]
    type = ParsedFunction
    value = 1.1e5-x*1e3
  [../]
[]

[BCs]
  [./xleft]
    type = DirichletBC
    value = 1
    variable = massfrac0
    boundary = left
  [../]
  [./xright]
    type = DirichletBC
    value = 0
    variable = massfrac0
    boundary = right
  [../]
  [./pright]
    type = DirichletBC
    variable = pp
    boundary = right
    value = 1e5
  [../]
  [./pleft]
    type = DirichletBC
    variable = pp
    boundary = left
    value = 1.1e5
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
  [../]
  [./diff0]
    type = PorousFlowDispersiveFlux
    variable = pp
    disp_trans = 0
    disp_long = 0.2
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = massfrac0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = massfrac0
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    disp_trans = 0
    disp_long = 0.2
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1e9
      density0 = 1000
      viscosity = 0.001
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = massfrac0
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro]
    type = PorousFlowPorosityConst
    porosity = 0.3
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '0 0'
    tortuosity = 0.1
  [../]
  [./relp]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-9 0 0 0 1e-9 0 0 0 1e-9'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2             '
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1e3
  dtmax = 10
  [./TimeStepper]
    type = IterationAdaptiveDT
    growth_factor = 1.5
    cutback_factor = 0.5
    dt = 1
  [../]
[]

[VectorPostprocessors]
  [./xmass]
    type = NodalValueSampler
    sort_by = id
    variable = massfrac0
  [../]
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/porous_flow/test/tests/flux_limited_TVD_pflow/pffltvd_2D.i

# Using flux-limited TVD advection ala Kuzmin and Turek, employing PorousFlow Kernels and UserObjects, with superbee flux-limiter
# 3D version
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  xmin = 0
  xmax = 1
  ny = 4
  ymin = 0
  ymax = 0.5
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '1 - x'
  [../]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = tracer
  [../]
  [./flux0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = advective_flux_calculator_0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = porepressure
  [../]
  [./flux1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = porepressure
    advective_flux_calculator = advective_flux_calculator_1
  [../]
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1
    boundary = left
  [../]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_component_1]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 1
    use_mobility = true
    flux_function = 1E3
  [../]
  [./remove_component_0]
    type = PorousFlowPiecewiseLinearSink
    variable = tracer
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 0
    use_mobility = true
    flux_function = 1E3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      thermal_expansion = 0
      viscosity = 1.0
      density0 = 1000.0
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure tracer'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
  [./advective_flux_calculator_0]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 0
  [../]
  [./advective_flux_calculator_1]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = tracer
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = the_simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-2 0 0   0 1E-2 0   0 0 1E-2'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0.5 0'
    num_points = 11
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  nl_abs_tol = 1E-8
  timestep_tolerance = 1E-3
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/porous_flow/test/tests/dirackernels/bh_except05.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    mass_fraction_component = 0
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/peridynamics/test/tests/jacobian_check/2D_heat_conduction_BPD.i

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./temp]
  [../]
[]

[AuxVariables]
  [./bond_status]
    order = CONSTANT
    family = MONOMIAL
    initial_condition = 1
  [../]
[]

[Kernels]
  [./HeatConduction]
    type = HeatConductionBPD
    variable = temp
  [../]
[]

[Materials]
  [./thermal_mat]
    type = ThermalConstantHorizonMaterialBPD
    temperature = temp
    thermal_conductivity = 1.0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1
[]

modules/tensor_mechanics/test/tests/inertial_torque/simple.i

# A single element is stretched.
#
# For all time:
# disp_x = 0
# disp_z = 3
#
# The velocities are initialised to zero
# The accelerations are initialised to
# accel_x = 0
# accel_y = 2
# accel_z = 0
#
# The only degree of freedom is disp_y.
# It is initialised to zero.
# The DE is the ZEROTH component of
# density * disp x accel = BodyForce
# (Choosing the zeroth component is unusual: this
# is to illustrate correct behaviour of the
# InertialTorque Kernel, rather than being
# relevant to any particular solid-mechanics problem.)
# The LHS = - density * disp_z * accel_y
# With density = 0.5 and BodyForce = -3 the solution is
# accel_y = 2, vel_y = 2 * t, and disp_y = t^2
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  velocities = 'vel_x vel_y vel_z'
  accelerations = 'accel_x accel_y accel_z'
  gamma = 0.5
  beta = 0.25
  alpha = 0.0
  eta = 0.0
[]

[Variables]
  [./disp_y]
  [../]
[]

[Kernels]
  [./icm_x]
    type = InertialTorque
    component = 0
    variable = disp_y
  [../]
  [./source_x]
    type = BodyForce
    variable = disp_y
    function = -3
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_z]
    initial_condition = 3
  [../]
  [./vel_x]
  [../]
  [./vel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_x]
  [../]
  [./accel_y]
    initial_condition = 2
  [../]
  [./accel_z]
  [../]
[]

[AuxKernels]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    execute_on = timestep_end
  [../]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    execute_on = timestep_end
  [../]
[]

[BCs]
  # zmin is called back
  # zmax is called front
  # ymin is called bottom
  # ymax is called top
  # xmin is called left
  # xmax is called right
[]

[Materials]
  [./density]
    type = GenericConstantMaterial
    prop_names = density
    prop_values = 0.5
  [../]
[]

[Postprocessors]
  [./y_disp]
    type = PointValue
    point = '0 0 0'
    use_displaced_mesh = false
    variable = disp_y
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  num_steps = 10
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian/cwp07.i

# Capped weak-plane plasticity
# checking jacobian for shear + tensile failure
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 1
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 1.0
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.1
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 0
    value_residual = 0
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 1  0 0 -1  1 -1 1'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 0
    smoothing_tol = 2
    yield_function_tol = 1E-10
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/xfem/test/tests/moving_interface/moving_diffusion.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
    heal_always = true
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 3
  xmin = 0.0
  xmax = 1
  ymin = 0.0
  ymax = 1
  elem_type = QUAD4
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./ls_func]
    type = ParsedFunction
    value = 'x-0.76+0.21*t'
  [../]
[]

[Kernels]
  [./diff]
    type = MatDiffusion
    variable = u
    diffusivity = diffusion_coefficient
  [../]
  [./time_deriv]
    type = TimeDerivative
    variable = u
  [../]
[]

[Constraints]
  [./u_constraint]
    type = XFEMSingleVariableConstraint
    use_displaced_mesh = false
    variable = u
    jump = 0
    use_penalty = true
    alpha = 1e5
    geometric_cut_userobject = 'level_set_cut_uo'
  [../]
[]

[BCs]
  [./right_u]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./diffusivity_A]
    type = GenericConstantMaterial
    prop_names = A_diffusion_coefficient
    prop_values = 5
  [../]

  [./diffusivity_B]
    type = GenericConstantMaterial
    prop_names = B_diffusion_coefficient
    prop_values = 0.5
  [../]

  [./diff_combined]
    type = LevelSetBiMaterialReal
    levelset_positive_base = 'A'
    levelset_negative_base = 'B'
    level_set_var = ls
    prop_name = diffusion_coefficient
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  l_max_its = 20
  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-5

  start_time = 0.0
  dt = 1
  end_time = 2

  max_xfem_update = 1
[]

[Outputs]
  exodus = true
  execute_on = timestep_end
  csv = true
  perf_graph = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/time_integrators/explicit-euler/ee-2d-quadratic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD9
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = ((x*x)+(y*y))-(4*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
    implicit = true
  [../]

  [./diff]
    type = Diffusion
    variable = u
    implicit = false
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
    implicit = false
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
    implicit = true
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'explicit-euler'
  solve_type = 'LINEAR'

  l_tol = 1e-13
  start_time = 0.0
  num_steps = 20
  dt = 0.00005
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_2/brick2_template1_sm.i

[Mesh]
  file = brick2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_x26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_x
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./disp_y26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x7 disp_y7 disp_x26 disp_y26 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

examples/ex21_debugging/ex21.i

[Mesh]
  file = reactor.e
  #Let's assign human friendly names to the blocks on the fly
  block_id = '1 2'
  block_name = 'fuel deflector'

  boundary_id = '4 5'
  boundary_name = 'bottom top'
[]

[Variables]
  #Use active lists to help debug problems. Switching on and off
  #different Kernels or Variables is extremely useful!
  active = 'diffused convected'
  [diffused]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.5
  []

  [convected]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  []
[]

[Kernels]
  #This Kernel consumes a real-gradient material property from the active material
  active = 'convection diff_convected example_diff time_deriv_diffused time_deriv_convected'
  [convection]
    type = ExampleConvection
    variable = convected
  []

  [diff_convected]
    type = Diffusion
    variable = convected
  []

  [example_diff]
    type = ExampleDiffusion
    variable = diffused
    coupled_coef = convected
  []

  [time_deriv_diffused]
    type = TimeDerivative
    variable = diffused
  []

  [time_deriv_convected]
    type = TimeDerivative
    variable = convected
  []
[]

[BCs]
  [bottom_diffused]
    type = DirichletBC
    variable = diffused
    boundary = 'bottom'
    value = 0
  []

  [top_diffused]
    type = DirichletBC
    variable = diffused
    boundary = 'top'
    value = 5
  []

  [bottom_convected]
    type = DirichletBC
    variable = convected
    boundary = 'bottom'
    value = 0
  []

  [top_convected]
    type = NeumannBC
    variable = convected
    boundary = 'top'
    value = 1
  []
[]

[Materials]
  [example]
    type = ExampleMaterial
    block = 'fuel'
    diffusion_gradient = 'diffused'

    #Approximate Parabolic Diffusivity
    independent_vals = '0 0.25 0.5 0.75 1.0'
    dependent_vals = '1e-2 5e-3 1e-3 5e-3 1e-2'
  []

  [example1]
    type = ExampleMaterial
    block = 'deflector'
    diffusion_gradient = 'diffused'

    # Constant Diffusivity
    independent_vals = '0 1.0'
    dependent_vals = '1e-1 1e-1'
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  dt = 0.1
  num_steps = 10
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/elastic_patch/elastic_patch_rz_large_strain_sm.i

# Deprecated: large_strain = true only introduces high order terms in the strain calculation
# but no rotation has been considered in solid mechanics. No such corresponding strain calculator
# in tensor mechanics
#
#
# This problem is adapted from the Abaqus verification manual:
#   "1.5.4 Patch test for axisymmetric elements"
#
# For large strain,
#   e_rr = 1e-3 + (1e-3)^2
#   e_zz = 1e-3 + 0.5*(1e-3)^2
#   e_tt = 1e-3 + 0.5*(1e-3)^2
#   e_rz = 0.5*(1e-3+(1e-3)^2)
#
# If you multiply these strains through the elasticity tensor for
#   axisymmetry, you will obtain the following stresses:
#   xx = 2001.6
#   yy = zz = 2001.2
#   xy = 400.4
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_patch_rz.e
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '1e-3*x'
  [../]
  [./uz]
    type = ParsedFunction
    value = '1e-3*(x+y)'
  [../]
  [./body]
    type = ParsedFunction
    value = '-400/x'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Kernels]
  [./body]
    type = BodyForce
    variable = disp_y
    value = 1
    function = body
  [../]

  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = ur
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = uz
  [../]

  [./temp]
    type = DirichletBC
    variable = temp
    boundary = 10
    value = 117.56
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.25

    temp = temp

    large_strain = true
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = 1

    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    block = 1
    density = 0.283
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  file_base = elastic_patch_rz_large_strain_out
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/tensile_update5.i

# Tensile, update version, with strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.
# Returns to close to the tip of the yield function.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '15 1 0.2  1 10 -0.3  -0.3 0.2 8'
    eigenstrain_name = ini_stress
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/chemical_reactions/test/tests/aqueous_equilibrium/2species_eqaux.i

# In this example, two primary species a and b are transported by diffusion and convection
# from the left of the porous medium, reacting to form two equilibrium species pa2 and pab
# according to the equilibrium reaction specified in the AqueousEquilibriumReactions block as:
#
#      reactions = '2a = pa2     2
#                   a + b = pab -2'
#
# where the 2 is the weight of the equilibrium species, the 2 on the RHS of the first reaction
# refers to the equilibrium constant (log10(Keq) = 2), and the -2 on the RHS of the second
# reaction equates to log10(Keq) = -2.
#
# This example is identical to 2species.i, except that it explicitly includes all AuxKernels
# and Kernels that are set up by the action in 2species.i, and that the equilbrium constants
# are provided by AuxVariables

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
[]

[AuxVariables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pa2]
  [../]
  [./pab]
  [../]
  [./pa2_logk]
    initial_condition = 2
  [../]
  [./pab_logk]
    initial_condition = -2
  [../]
[]

[AuxKernels]
  [./pa2eq]
    type = AqueousEquilibriumRxnAux
    variable = pa2
    v = a
    sto_v = 2
    log_k = pa2_logk
  [../]
  [./pabeq]
    type = AqueousEquilibriumRxnAux
    variable = pab
    v = 'a b'
    sto_v = '1 1'
    log_k = pab_logk
  [../]
[]

[ICs]
  [./pressure]
    type = FunctionIC
    variable = pressure
    function = 2-x
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./a_conv]
    type = PrimaryConvection
    variable = a
    p = pressure
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./b_diff]
    type = PrimaryDiffusion
    variable = b
  [../]
  [./b_conv]
    type = PrimaryConvection
    variable = b
    p = pressure
  [../]
  [./a1eq]
    type = CoupledBEEquilibriumSub
    variable = a
    log_k = pa2_logk
    weight = 2
    sto_u = 2
  [../]
  [./a1diff]
    type = CoupledDiffusionReactionSub
    variable = a
    log_k = pa2_logk
    weight = 2
    sto_u = 2
  [../]
  [./a1conv]
    type = CoupledConvectionReactionSub
    variable = a
    log_k = pa2_logk
    weight = 2
    sto_u = 2
    p = pressure
  [../]
  [./a2eq]
    type = CoupledBEEquilibriumSub
    variable = a
    v = b
    log_k = pab_logk
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./a2diff]
    type = CoupledDiffusionReactionSub
    variable = a
    v = b
    log_k = pab_logk
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./a2conv]
    type = CoupledConvectionReactionSub
    variable = a
    v = b
    log_k = pab_logk
    weight = 1
    sto_v = 1
    sto_u = 1
    p = pressure
  [../]
  [./b2eq]
    type = CoupledBEEquilibriumSub
    variable = b
    v = a
    log_k = pab_logk
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./b2diff]
    type = CoupledDiffusionReactionSub
    variable = b
    v = a
    log_k = pab_logk
    weight = 1
    sto_v = 1
    sto_u = 1
  [../]
  [./b2conv]
    type = CoupledConvectionReactionSub
    variable = b
    v = a
    log_k = pab_logk
    weight = 1
    sto_v = 1
    sto_u = 1
    p = pressure
  [../]
[]

[BCs]
  [./a_left]
    type = DirichletBC
    variable = a
    boundary = left
    value = 1.0e-2
  [../]
  [./a_right]
    type = ChemicalOutFlowBC
    variable = a
    boundary = right
  [../]
  [./b_left]
    type = DirichletBC
    variable = b
    boundary = left
    value = 1.0e-2
  [../]
  [./b_right]
    type = ChemicalOutFlowBC
    variable = b
    boundary = right
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-4 1e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-12
  start_time = 0.0
  end_time = 100
  dt = 10.0
[]

[Outputs]
  file_base = 2species_out
  exodus = true
  perf_graph = true
  print_linear_residuals = true
  hide = 'pa2_logk pab_logk'
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

modules/richards/test/tests/jacobian_1/jn20.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true
# piecewiselinearflux = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 1
    [../]
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = 'left right'
    pressures = '-0.9 0.9'
    bare_fluxes = '1E6 2E6'  # cannot make too high as finitedifference constant state bums out due to precision loss
    use_mobility = false
    use_relperm = false
    variable = pressure
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn20
  exodus = false
[]

modules/combined/test/tests/phase_field_fracture/crack2d_linear_fracture_energy.i

#This input uses PhaseField-Nonconserved Action to add phase field fracture bulk rate kernels
[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 20
    ny = 10
    ymax = 0.5
  []
  [./noncrack]
    type = BoundingBoxNodeSetGenerator
    new_boundary = noncrack
    bottom_left = '0.5 0 0'
    top_right = '1 0 0'
    input = gen
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Modules]
  [./PhaseField]
    [./Nonconserved]
      [./c]
        free_energy = F
        kappa = kappa_op
        mobility = L
      [../]
    [../]
  [../]
  [./TensorMechanics]
    [./Master]
      [./mech]
        add_variables = true
        strain = SMALL
        additional_generate_output = 'stress_yy'
        save_in = 'resid_x resid_y'
      [../]
    [../]
  [../]
[]

[AuxVariables]
  [./resid_x]
  [../]
  [./resid_y]
  [../]
[]

[Kernels]
  [./solid_x]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_x
    component = 0
    c = c
  [../]
  [./solid_y]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_y
    component = 1
    c = c
  [../]
[]

[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 't'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = noncrack
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value = 0
  [../]
[]

[Materials]
  [./pfbulkmat]
    type = GenericConstantMaterial
    prop_names = 'gc_prop l visco'
    prop_values = '1e-3 0.04 1e-4'
  [../]
  [./define_mobility]
    type = ParsedMaterial
    material_property_names = 'gc_prop visco'
    f_name = L
    function = '1.0/(gc_prop * visco)'
  [../]
  [./define_kappa]
    type = ParsedMaterial
    material_property_names = 'gc_prop l'
    f_name = kappa_op
    function = 'gc_prop * l * 3 / 4'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
  [../]
  [./elastic]
    type = ComputeLinearElasticPFFractureStress
    c = c
    E_name = 'elastic_energy'
    D_name = 'degradation'
    F_name = 'fracture_energy'
    barrier_energy = 'barrier'
    decomposition_type = strain_spectral
  [../]
  [./degradation]
    type = DerivativeParsedMaterial
    f_name = degradation
    args = 'c'
    function = '(1.0-c)^2*(1.0 - eta) + eta'
    constant_names       = 'eta'
    constant_expressions = '0.0'
    derivative_order = 2
  [../]
  [./fracture_energy]
    type = DerivativeParsedMaterial
    f_name = fracture_energy
    args = 'c'
    material_property_names = 'gc_prop l'
    function = '3 * gc_prop / (8 * l) * c'
    derivative_order = 2
  [../]
  [./fracture_driving_energy]
    type = DerivativeSumMaterial
    args = c
    sum_materials = 'elastic_energy fracture_energy'
    derivative_order = 2
    f_name = F
  [../]
  [./barrier_energy]
    type = ParsedMaterial
    f_name = barrier
    material_property_names = 'gc_prop l'
    function = '3 * gc_prop / 16 / l'
  [../]
[]

[Postprocessors]
  [./resid_x]
    type = NodalSum
    variable = resid_x
    boundary = 2
  [../]
  [./resid_y]
    type = NodalSum
    variable = resid_y
    boundary = 2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_rel_tol = 1e-8
  l_max_its = 10
  nl_max_its = 20

  dt = 1e-4
  dtmin = 1e-4
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/sliding_block/sliding/constraint/frictionless_penalty.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the penalty method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./left_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/richards/test/tests/gravity_head_1/gh22.i

# investigating validity of immobile saturation
# 50 elements, no SUPG

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 50
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1 10 100 1000 10000'
    x = '0 10 100 1000 10000'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.3
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -1.0
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGnone
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E0
  end_time = 1E5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = gh22
  execute_on = 'timestep_end final'
  interval = 10000
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/single_pnt_2d/single_point_2d_frictional.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = single_point_2d.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./appl_disp]
    type = PiecewiseLinear
    x = '0 0.001  0.101'
    y = '0 0.0   -0.10'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./incslip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./incslip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = appl_disp
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = -0.002001
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e9
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputePlaneFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputePlaneFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./disp_x]
    type = NodalVariableValue
    nodeid = 5
    variable = disp_x
  [../]
  [./disp_y]
    type = NodalVariableValue
    nodeid = 5
    variable = disp_y
  [../]
  [./inc_slip_x]
    type = NodalVariableValue
    nodeid = 5
    variable = inc_slip_x
  [../]
  [./inc_slip_y]
    type = NodalVariableValue
    nodeid = 5
    variable = inc_slip_y
  [../]
  [./accum_slip_x]
    type = NodalVariableValue
    nodeid = 5
    variable = accum_slip_x
  [../]
  [./accum_slip_y]
    type = NodalVariableValue
    nodeid = 5
    variable = accum_slip_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu    superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 200
  dt = 0.001
  end_time = 0.001
  num_steps = 10000
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-8
  dtmin = 0.001
  l_tol = 1e-3
[]

[Outputs]
  file_base = single_point_2d_out_frictional_0_2_kin
  exodus = true
  print_linear_residuals = true
  perf_graph = true
  csv = true
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = coulomb
    system = constraint
    formulation = kinematic
    penalty = 1e12
    normalize_penalty = true
    friction_coefficient = '0.2'
    tangential_tolerance = 1e-3
  [../]
[]

 [Dampers]
   [./contact_slip]
     type = ContactSlipDamper
     master = '2'
     slave = '3'
   [../]
 []

modules/tensor_mechanics/test/tests/plane_stress/weak_plane_stress_incremental.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  temperature = temp
  out_of_plane_strain = strain_zz
[]

[Mesh]
  file = square.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./strain_zz]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./nl_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
  [./min_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = min
  [../]
  [./max_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = max
  [../]
[]

[Modules/TensorMechanics/Master]
  [plane_stress]
    planar_formulation = WEAK_PLANE_STRESS
    strain = SMALL
    incremental = true
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy'
    eigenstrain_names = eigenstrain
  []
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = nl_strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0     1   100'
    y='0  0.00  0.00'
  [../]
  [./tempfunc]
    type = ParsedFunction
    value = '(1 - x) * t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-06

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/crystal_plasticity/crysp_save_euler.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
  nx = 2
  ny = 2
[]

[Variables]
  [./disp_x]
    block = 0
  [../]
  [./disp_y]
    block = 0
  [../]
[]

[GlobalParams]
  volumetric_locking_correction = true
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./rotout]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./gss1]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./euler1]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./euler2]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./euler3]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[UserObjects]
  [./prop_read]
    type = ElementPropertyReadFile
    prop_file_name = 'euler_ang_file.txt'
    # Enter file data as prop#1, prop#2, .., prop#nprop
    nprop = 3
    read_type = element
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
  [./e_yy]
    type = RankTwoAux
    variable = e_yy
    rank_two_tensor = lage
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_yy]
    type = RankTwoAux
    variable = fp_yy
    rank_two_tensor = fp
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss1
    property = gss
    index = 0
    execute_on = timestep_end
    block = 0
  [../]
  [./euler1]
    type = MaterialRealVectorValueAux
    variable = euler1
    property = Euler_angles
    component = 0
    execute_on = timestep_end
    block = 0
  [../]
  [./euler2]
    type = MaterialRealVectorValueAux
    variable = euler2
    property = Euler_angles
    component = 1
    execute_on = timestep_end
    block = 0
  [../]
  [./euler3]
    type = MaterialRealVectorValueAux
    variable = euler3
    property = Euler_angles
    component = 2
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCrystalPlasticity
    block = 0
    gtol = 1e-2
    slip_sys_file_name = input_slip_sys.txt
    nss = 12
    num_slip_sys_flowrate_props = 2 #Number of properties in a slip system
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    hprops = '1.0 541.5 60.8 109.8 2.5'
    gprops = '1 4 60.8 5 8 60.8 9 12 60.8'
    tan_mod_type = exact
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
    read_prop_user_object = prop_read
  [../]
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_yy]
    type = ElementAverageValue
    variable = e_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_yy]
    type = ElementAverageValue
    variable = fp_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./gss1]
    type = ElementAverageValue
    variable = gss1
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 0.01
  dtmax = 10.0
  dtmin = 0.01

  num_steps = 10
[]

[Outputs]
  file_base = crysp_save_euler_out
  exodus = true
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
    use_displaced_mesh = true
  [../]
[]

modules/phase_field/test/tests/rigidbodymotion/grain_motion_fauxGT.i

# test file for showing reaction forces between particles
[GlobalParams]
  var_name_base = eta
  op_num = 2
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 5
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 1
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./eta0]
  [../]
  [./eta1]
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    args = 'eta0 eta1'
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = 'eta0 eta1'
    grain_force = grain_force
    grain_tracker_object = grain_center
    grain_volumes = grain_volumes
  [../]
  [./eta0_dot]
    type = TimeDerivative
    variable = eta0
  [../]
  [./vadv_eta]
    type = SingleGrainRigidBodyMotion
    variable = eta0
    c = c
    v = 'eta0 eta1'
    grain_force = grain_force
    grain_tracker_object = grain_center
    grain_volumes = grain_volumes
    op_index = 0
  [../]
  [./acint_eta0]
    type = ACInterface
    variable = eta0
    mob_name = M
    #args = c
    kappa_name = kappa_eta
  [../]
  [./acbulk_eta0]
    type = AllenCahn
    variable = eta0
    mob_name = M
    f_name = F
    args = 'c eta1'
  [../]
  [./eta1_dot]
    type = TimeDerivative
    variable = eta1
  [../]
  [./vadv_eta1]
    type = SingleGrainRigidBodyMotion
    variable = eta1
    c = c
    v = 'eta0 eta1'
    op_index = 1
    grain_force = grain_force
    grain_tracker_object = grain_center
    grain_volumes = grain_volumes
  [../]
  [./acint_eta1]
    type = ACInterface
    variable = eta1
    mob_name = M
    #args = c
    kappa_name = kappa_eta
  [../]
  [./acbulk_eta1]
    type = AllenCahn
    variable = eta1
    mob_name = M
    f_name = F
    args = 'c eta0'
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '1.0  0.5      0.5'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'c eta0 eta1'
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+eta0*(1-eta0)*c+eta1*(1-eta1)*c
    derivative_order = 2
  [../]
  [./force_density]
    type = ForceDensityMaterial
    c = c
    etas ='eta0 eta1'
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  [./df00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df01]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df10]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./centroids]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    var_name_base = eta
    op_num = 2
    v = 'eta0 eta1'
  [../]
  [./df01]
    type = MaterialStdVectorRealGradientAux
    variable = df01
    index = 0
    component = 1
    property = force_density
  [../]
  [./df11]
    type = MaterialStdVectorRealGradientAux
    variable = df11
    index = 1
    component = 1
    property = force_density
  [../]
  [./df00]
    type = MaterialStdVectorRealGradientAux
    variable = df00
    index = 0
    component = 0
    property = force_density
  [../]
  [./df10]
    type = MaterialStdVectorRealGradientAux
    variable = df10
    index = 1
    component = 0
    property = force_density
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_center
    field_display = UNIQUE_REGION
    execute_on = 'initial timestep_end'
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_center
    field_display = VARIABLE_COLORING
    execute_on = 'initial timestep_end'
  [../]
  [./centroids]
    type = FeatureFloodCountAux
    variable = centroids
    execute_on = 'initial timestep_end'
    field_display = CENTROID
    flood_counter = grain_center
  [../]
[]

[ICs]
  [./ic_eta0]
    int_width = 1.0
    x1 = 20.0
    y1 = 0.0
    radius = 14.0
    outvalue = 0.0
    variable = eta0
    invalue = 1.0
    type = SmoothCircleIC
  [../]
  [./IC_eta1]
    int_width = 1.0
    x1 = 30.0
    y1 = 25.0
    radius = 14.0
    outvalue = 0.0
    variable = eta1
    invalue = 1.0
    type = SmoothCircleIC
  [../]
  [./ic_c]
    type = SpecifiedSmoothCircleIC
    invalue = 1.0
    outvalue = 0.1
    int_width = 1.0
    x_positions = '20.0 30.0 '
    z_positions = '0.0 0.0 '
    y_positions = '0.0 25.0 '
    radii = '14.0 14.0'
    3D_spheres = false
    variable = c
    block = 0
  [../]
[]

[VectorPostprocessors]
  [./forces]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./grain_center]
    type = FauxGrainTracker
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
    variable = 'eta0 eta1'
  [../]
  [./grain_force]
    type = ComputeGrainForceAndTorque
    execute_on = 'linear nonlinear'
    grain_data = grain_center
    force_density = force_density
    c = c
    etas = 'eta0 eta1'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/actions/conserved_split_1var_high_order.i

#
# Test the conserved action with split solve and 1 variable
#
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 50
  ymax = 50
  elem_type = QUAD
  second_order = true
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./cv]
        solve_type = REVERSE_SPLIT
        family = LAGRANGE
        order = SECOND
        free_energy = F
        kappa = 2.0
        mobility = 1.0
      [../]
    [../]
  [../]
[]

[ICs]
  [./InitialCondition]
    type = CrossIC
    x1 = 5.0
    y1 = 5.0
    x2 = 45.0
    y2 = 45.0
    variable = cv
  [../]
[]

[Materials]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'cv'
    function = '(1-cv)^2 * (1+cv)^2'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'

  l_max_its = 30
  l_tol = 1.0e-5
  nl_max_its = 10
  nl_rel_tol = 1.0e-12

  start_time = 0.0
  num_steps = 5
  dt = 0.7
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/variables/output_vars_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD9
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]

  # ODE variables
  [./x]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
  [./y]
    family = SCALAR
    order = FIRST
    initial_condition = 2
  [../]
[]

[AuxVariables]
  [./elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./elemental_restricted]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./nodal]
    order = FIRST
    family = LAGRANGE
  [../]

  [./nodal_restricted]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./conv_u]
    type = CoupledForce
    variable = u
    v = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[AuxKernels]
  [./elemental]
    type = ConstantAux
    variable = elemental
    value = 1
  [../]

  [./elemental_restricted]
    type = ConstantAux
    variable = elemental_restricted
    value = 1
  [../]

  [./nodal]
    type = ConstantAux
    variable = elemental
    value = 2
  [../]

  [./nodal_restricted]
    type = ConstantAux
    variable = elemental_restricted
    value = 2
  [../]
[]

[ScalarKernels]
  [./td1]
    type = ODETimeDerivative
    variable = x
  [../]
  [./ode1]
    type = ImplicitODEx
    variable = x
    y = y
  [../]

  [./td2]
    type = ODETimeDerivative
    variable = y
  [../]
  [./ode2]
    type = ImplicitODEy
    variable = y
    x = x
  [../]
[]

[BCs]
  active = 'left_u right_u left_v'

  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 9
  [../]

  [./left_v]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 5
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 2
  [../]
[]

[Postprocessors]
  [./x]
    type = ScalarVariable
    variable = x
    execute_on = 'initial timestep_end'
  [../]
  [./y]
    type = ScalarVariable
    variable = y
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  dt = 0.01
  num_steps = 1
[]

[Outputs]
  show = 'x u nodal elemental'
  [./out]
    type = Exodus
    elemental_as_nodal = true
    scalar_as_nodal = true
  [../]
[]

test/tests/outputs/recover/recover1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  file_base = recover_out
  exodus = true
  [./recover]
    type = Checkpoint
    file_base = test_recover_dir
  [../]
[]

modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_second/small.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'small'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./corner]
    type = ExtraNodesetGenerator
    input = block_rename
    coord = '0 -10.0'
    new_boundary = point
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = corner
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    use_automatic_differentiation = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
  [../]
  [./plank]
    use_automatic_differentiation = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ADComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

test/tests/functions/linear_combination_function/except1.i

# LinearCombinationFunction function test
# See [Functions] block for a description of the tests

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 2
  nx = 10
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./the_linear_combo]
  [../]
[]

[AuxKernels]
  [./the_linear_combo]
    type = FunctionAux
    variable = the_linear_combo
    function = the_linear_combo
  [../]
[]


[Functions]
  [./twoxplus1]
    type = ParsedFunction
    value = 2*x+1
  [../]

  [./xsquared]
    type = ParsedFunction
    value = x*x
  [../]

  [./the_linear_combo]
    type = LinearCombinationFunction
    functions = 'x twoxplus1 xsquared'
    w = '0.5 5 0.4 0.3'
  [../]

  [./should_be_answer]
    type = ParsedFunction
    value = 0.5*x+5*(2*x+1)*0.4*x*x+0.3*7
  [../]
[]

[Postprocessors]
  [./should_be_zero]
    type = NodalL2Error
    function = should_be_answer
    variable = the_linear_combo
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  hide = dummy
  exodus = false
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_3/cyl3_template2.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl3_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    tangential_tolerance = 1e-3
    penalty = 1e+11
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/combined/test/tests/ad_power_law_creep/power_law_creep_smallstrain.i

# 1x1x1 unit cube with uniform pressure on top face for the case of small strain.
#  This test does not have a solid mechanics analog because there is not an equvialent
#  small strain with rotations strain calculator material in solid mechanics

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_yy creep_strain_xx creep_strain_yy creep_strain_zz elastic_strain_yy'
    use_automatic_differentiation = true
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1'
  [../]
[]

[Kernels]
  [./heat]
    type = ADHeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = ADHeatConductionTimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./u_top_pull]
    type = ADPressure
    variable = disp_y
    component = 1
    boundary = top
    constant = -10.0e6
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = ADDirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'bottom top'
    value = 1000.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e11
    poissons_ratio = 0.3
  [../]
  [./radial_return_stress]
    type = ADComputeMultipleInelasticStress
    inelastic_models = 'power_law_creep'
  [../]
  [./power_law_creep]
    type = ADPowerLawCreepStressUpdate
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    temperature = temp
  [../]

  [./thermal]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]
  [./density]
    type = ADDensity
    density = 1.0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.0
  num_steps = 10
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/centroid_multiapp/sub_app.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
  ymax = 0.1
  xmax = 0.1
[]

[Variables]
  [./x]
  [../]
  [./y]
  [../]
[]

[Kernels]
  [./diff_y]
    type = Diffusion
    variable = y
  [../]
  [./diff_x]
    type = Diffusion
    variable = x
  [../]
[]

[BCs]
  [./right_x]
    type = PostprocessorDirichletBC
    variable = x
    boundary = 'right'
    postprocessor = incoming_x
  [../]
  [./left_y]
    type = DirichletBC
    variable = y
    boundary = 'left'
    value = 0
  [../]
  [./right_y]
    type = PostprocessorDirichletBC
    variable = y
    boundary = 'right'
    postprocessor = incoming_y
  [../]
  [./left_x]
    type = DirichletBC
    variable = x
    boundary = 'left'
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  solve_type = PJFNK
[]

[Outputs]
  exodus = true
[]

[Postprocessors]
  [./incoming_x]
    type = Receiver
    execute_on = 'TIMESTEP_BEGIN'
  [../]
  [./incoming_y]
    type = Receiver
    execute_on = 'TIMESTEP_BEGIN'
  [../]
[]

modules/tensor_mechanics/test/tests/material_limit_time_step/creep/nafems_test5a_lim.i

[GlobalParams]
  temperature = temp
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane1_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  group_variables = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./temp]
    initial_condition = 1500.0
  [../]
  [./creep]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./invariant3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./creep_aux]
    type = MaterialRealAux
    property = effective_creep_strain
    variable = creep
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./vonmises]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = VonMisesStress
  [../]
  [./pressure]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = pressure
    scalar_type = Hydrostatic
  [../]
  [./invariant3]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = invariant3
    scalar_type = ThirdInvariant
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    rank_two_tensor = creep_strain
    variable = creep_strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./creep_strain_yy]
    type = RankTwoAux
    rank_two_tensor = creep_strain
    variable = creep_strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./creep_strain_zz]
    type = RankTwoAux
    rank_two_tensor = creep_strain
    variable = creep_strain_zz
    index_i = 2
    index_j = 2
  [../]
  [./creep_strain_xy]
    type = RankTwoAux
    rank_two_tensor = creep_strain
    variable = creep_strain_xy
    index_i = 0
    index_j = 1
  [../]
  [./elastic_str_xx_aux]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./elastic_str_yy_aux]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./elastic_str_zz_aux]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 3
    component = 1
    factor = -100.0
  [../]
  [./side_press]
    type = Pressure
    variable = disp_x
    boundary = 4
    component = 0
    factor = -200.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    youngs_modulus = 200e3
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputePlaneFiniteStrain
    block = 1
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    block = 1
    inelastic_models = 'powerlawcrp'
  [../]
  [./powerlawcrp]
    type = PowerLawCreepStressUpdate
    block = 1
    coefficient = 3.125e-14
    n_exponent = 5.0
    m_exponent = 0.0
    activation_energy = 0.0
    max_inelastic_increment = 0.01
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = ' lu       superlu_dist'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 100
  end_time = 1000.0
  num_steps = 10000
  l_tol = 1e-3

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1e-6
    time_t = '1e-6  2e-6 3e-6 5e-6 9e-6 1.7e-5 3.3e-5 6.5e-5 1.29e-4 2.57e-4 5.13e-4 1.025e-3 2.049e-3 4.097e-3 8.193e-3 1.638e-2 3.276e-2 5.734e-2 0.106 0.180 0.291 0.457 0.706 1.08 1.64 2.48 3.74 5.63 8.46 12.7 19.1 28.7 43.0 64.5 108.0 194.0 366.0 710.0 1000.0'
    time_dt = '1e-6 1e-6 2e-6 4e-6 8e-6 1.6e-5 3.2e-5 6.4e-5 1.28e-4 2.56e-4 5.12e-4 1.024e-3 2.048e-3 4.096e-3 8.192e-3 1.6384e-2 2.458e-2 4.915e-2 7.40e-2 0.111 0.166 0.249 0.374 0.560 0.840 1.26 1.89 2.83 4.25 6.40 9.6 14.3 21.5 43.0 86.1 172.0 344.0 290.0 290.0'
    optimal_iterations = 30
    iteration_window = 9
    growth_factor = 2.0
    cutback_factor = 0.5
    timestep_limiting_postprocessor = matl_ts_min
  [../]
[]

[Postprocessors]
  [./matl_ts_min]
    type = MaterialTimeStepPostprocessor
  [../]
  [./sigma_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./pressure]
    type = ElementAverageValue
    variable = pressure
  [../]
  [./invariant3]
    type = ElementAverageValue
    variable = invariant3
  [../]
  [./eps_crp_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
  [../]
  [./eps_crp_yy]
    type = ElementAverageValue
    variable = creep_strain_yy
  [../]
  [./eps_crp_zz]
    type = ElementAverageValue
    variable = creep_strain_zz
  [../]
  [./eps_crp_mag]
    type = ElementAverageValue
    variable = creep
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x3]
    type = NodalVariableValue
    nodeid = 2
    variable = disp_x
  [../]
  [./disp_y3]
    type = NodalVariableValue
    nodeid = 2
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./elas_str_xx]
    type = ElementAverageValue
    variable = elastic_strain_xx
  [../]
  [./elas_str_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./elas_str_zz]
    type = ElementAverageValue
    variable = elastic_strain_zz
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  csv = true
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 25
  [../]
[]

modules/phase_field/test/tests/actions/Nonconserved_2vars.i

#
# Test the parsed function free enery Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  xmax = 40
  ymax = 40
  elem_type = QUAD
[]

[Modules]
  [./PhaseField]
    [./Nonconserved]
      [./eta1]
        free_energy = F
        kappa = 2.0
        mobility = 1.0
        variable_mobility = false
        args = 'eta2'
      [../]
      [./eta2]
        free_energy = F
        kappa = 2.0
        mobility = 1.0
        variable_mobility = false
        args = 'eta1'
      [../]
    [../]
  [../]
[]

[ICs]
  [./eta1_IC]
    type = SmoothCircleIC
    variable = eta1
    x1 = 20.0
    y1 = 20.0
    radius = 12.0
    invalue = 1.0
    outvalue = 0.0
    int_width = 3.0
  [../]
  [./eta2_IC]
    type = SmoothCircleIC
    variable = eta2
    x1 = 20.0
    y1 = 20.0
    radius = 12.0
    invalue = 0.0
    outvalue = 1.0
    int_width = 3.0
  [../]
[]

[Materials]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta1 eta2'
    function = '2.5 * (eta1^4/4 - eta1^2/2 + eta2^4/4 - eta2^2/2 + 3/2 * eta1^2 * eta2^2) + 1/4'
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  num_steps = 8
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

modules/phase_field/examples/cahn-hilliard/Parsed_SplitCH.i

#
# Example problem showing how to use the DerivativeParsedMaterial with SplitCHParsed.
# The free energy is identical to that from SplitCHMath, f_bulk = 1/4*(1-c)^2*(1+c)^2.
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 150
  ny = 150
  xmax = 60
  ymax = 60
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./c]
        free_energy = fbulk
        mobility = M
        kappa = kappa_c
        solve_type = REVERSE_SPLIT
      [../]
    [../]
  [../]
[]

[AuxVariables]
  [./local_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[ICs]
  [./cIC]
    type = RandomIC
    variable = c
    min = -0.1
    max =  0.1
  [../]
[]

[AuxKernels]
  [./local_energy]
    type = TotalFreeEnergy
    variable = local_energy
    f_name = fbulk
    interfacial_vars = c
    kappa_names = kappa_c
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./mat]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 0.5'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = fbulk
    args = c
    constant_names = W
    constant_expressions = 1.0/2^2
    function = W*(1-c)^2*(1+c)^2
    enable_jit = true
    outputs = exodus
  [../]
[]

[Postprocessors]
  [./top]
    type = SideIntegralVariablePostprocessor
    variable = c
    boundary = top
  [../]
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    variable = local_energy
  [../]
[]

[Preconditioning]
  [./cw_coupling]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  scheme = bdf2

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm      lu          '

  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 20
  nl_rel_tol = 1e-9

  dt = 2.0
  end_time = 20.0
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

test/tests/geomsearch/2d_moving_penetration/pl_test2qtt.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test2q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1.e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test2qtt_out
  exodus = true
[]

test/tests/multiapps/sub_cycling/master_iteration_adaptive.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0 0 0 0'
    input_files = sub.i
    sub_cycling = true
  [../]
[]

modules/porous_flow/test/tests/dirackernels/bh_except16.i

# fully-saturated
# production
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    function_of = temperature
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

test/tests/kernels/vector_fe/electromagnetic_coulomb_gauge.i

# This is an MMS problem that demonstrates solution of Maxwell's equations in the
# Coulomb gauge potential form. The equations solved are:
# -\nabla^2 V = f_{V,mms}
# -\nabla^2 A - \omega^2 A + \nabla \frac{\partial V}{\partial t} = f_{A,mms}
# This tests the value and gradient of a VectorMooseVariable as well as the time
# derivative of the gradient of a standard MooseVariable
#
# This input file is subject to two tests:
# 1) An exodiff test of the physics
# 2) A Jacobian test to verify accuracy of hand-coded Jacobian routines

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  xmin = -1
  ymin = -1
[]

[Variables]
  [./V]
  [../]
  [./A]
    family = LAGRANGE_VEC
    order = FIRST
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = V
    coef = 5
  [../]
  [./V_frc]
    type = BodyForce
    function = 'V_forcing_function'
    variable = V
  [../]
  [./A_diff]
    type = VectorCoefDiffusion
    variable = A
    coef = 5
  [../]
  [./A_coeff_reaction]
    type = VectorCoeffReaction
    variable = A
    coefficient = -.09
  [../]
  [./A_coupled_grad_td]
    type = VectorCoupledGradientTimeDerivative
    variable = A
    v = V
  [../]
  [./A_frc]
    type = VectorBodyForce
    variable = A
    function_x = 'Ax_forcing_function'
    function_y = 'Ay_forcing_function'
    function_z = '0'
  [../]
[]

[BCs]
  [./bnd_V]
    type = FunctionDirichletBC
    variable = V
    boundary = 'left right top bottom'
    function = 'V_exact_sln'
  [../]
  [./bnd_A]
    type = VectorPenaltyDirichletBC
    variable = A
    x_exact_sln = 'Ax_exact_sln'
    y_exact_sln = 'Ay_exact_sln'
    z_exact_sln = '0'
    penalty = 1e10
    boundary = 'left right top bottom'
  [../]
[]

[Functions]
  [./V_exact_sln]
    type = ParsedFunction
    value = 'cos(0.3*t)*cos(1.1*x)*cos(1.2*y)'
  [../]
  [./Ax_exact_sln]
    type = ParsedFunction
    value = 'cos(0.3*t)*cos(0.4*x)*cos(0.5*y)'
  [../]
  [./Ay_exact_sln]
    type = ParsedFunction
    value = 'cos(0.3*t)*cos(0.6*x)*cos(0.7*y)'
  [../]
  [./V_forcing_function]
    type = ParsedFunction
    value = '0.33*sin(0.3*t)*sin(1.1*x)*cos(1.2*y) + 13.25*cos(0.3*t)*cos(1.1*x)*cos(1.2*y)'
  [../]
  [./Ax_forcing_function]
    type = ParsedFunction
    value = '0.33*sin(0.3*t)*sin(1.1*x)*cos(1.2*y) + 1.96*cos(0.3*t)*cos(0.4*x)*cos(0.5*y)'
  [../]
  [./Ay_forcing_function]
    type = ParsedFunction
    value = '0.36*sin(0.3*t)*sin(1.2*y)*cos(1.1*x) + 4.16*cos(0.3*t)*cos(0.6*x)*cos(0.7*y)'
  [../]
[]

[Preconditioning]
  [./pre]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  end_time = 3
  l_max_its = 100
  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'asm 100'
  petsc_options = '-ksp_converged_reason -ksp_monitor_true_residual -ksp_monitor_singular_value -snes_linesearch_monitor'
  line_search = 'bt'
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
[]

[Debug]
  show_var_residual_norms = true
[]

test/tests/postprocessors/time_extreme_value/time_extreme_value.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = u
    boundary = left
    function = 'if(t<1.0,t,1.0)'
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = 'if(t<1.0,2.0-t,1.0)'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

[]

[Postprocessors]
  [./max_nl_dofs]
    type = TimeExtremeValue
    value_type = max
    postprocessor = nl_dofs
    execute_on = 'initial timestep_end'
  [../]

  [./nl_dofs]
    type = NumDOFs
    system = NL
    execute_on = 'initial timestep_end'
  [../]
[]

[Adaptivity]
  marker = marker
  max_h_level = 2
  [./Markers]
    [./marker]
      type = ValueRangeMarker
      lower_bound = 0.7
      upper_bound = 1.3
      buffer_size = 0.2
      variable = u
      invert = true
      third_state = DO_NOTHING
    [../]
  [../]
[]

[Outputs]
  csv = true
[]

test/tests/transfers/multiapp_mesh_function_transfer/tosub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [sub]
    positions = '.1 .1 0 0.6 0.6 0 0.6 0.1 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = tosub_sub.i
    execute_on = timestep_end
  []
[]

[Transfers]
  [to_sub]
    source_variable = u
    direction = to_multiapp
    variable = transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
  []

  [elemental_to_sub]
    source_variable = u
    direction = to_multiapp
    variable = elemental_transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
  []
[]

test/tests/transfers/transfer_interpolation/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./nearest_node]
  [../]
  [./mesh_function]
  [../]
  [./user_object]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./interpolation]
  [../]
[]

[Kernels]
  [./cd]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.01
  nl_rel_tol = 1e-10

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/phase_field/tutorials/spinodal_decomposition/s1_testmodel.i

#
# Simulation of an iron-chromium alloy using simplest possible code and a test
# set of initial conditions.
#

[Mesh]
  # generate a 2D, 25nm x 25nm mesh
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  nx = 100
  ny = 100
  nz = 0
  xmin = 0
  xmax = 25
  ymin = 0
  ymax = 25
  zmin = 0
  zmax = 0
[]

[Variables]
  [./c]   # Mole fraction of Cr (unitless)
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]   # Chemical potential (eV/mol)
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  # Use a bounding box IC at equilibrium concentrations to make sure the
  # model behaves as expected.
  [./testIC]
    type = BoundingBoxIC
    variable = c
    x1 = 5
    x2 = 20
    y1 = 5
    y2 = 20
    inside = 0.823
    outside = 0.236
  [../]
[]

[BCs]
  # periodic BC as is usually done on phase-field models
  [./Periodic]
    [./c_bcs]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Kernels]
  # See wiki page "Developing Phase Field Models" for more information on Split
  # Cahn-Hilliard equation kernels.
  # http://mooseframework.org/wiki/PhysicsModules/PhaseField/DevelopingModels/
  [./w_dot]
    variable = w
    v = c
    type = CoupledTimeDerivative
  [../]
  [./coupled_res]
    variable = w
    type = SplitCHWRes
    mob_name = M
  [../]
  [./coupled_parsed]
    variable = c
    type = SplitCHParsed
    f_name = f_loc
    kappa_name = kappa_c
    w = w
  [../]
[]

[Materials]
  # d is a scaling factor that makes it easier for the solution to converge
  # without changing the results. It is defined in each of the materials and
  # must have the same value in each one.
  [./constants]
    # Define constant values kappa_c and M. Eventually M will be replaced with
    # an equation rather than a constant.
    type = GenericFunctionMaterial
    prop_names = 'kappa_c M'
    prop_values = '8.125e-16*6.24150934e+18*1e+09^2*1e-27
                   2.2841e-26*1e+09^2/6.24150934e+18/1e-27'
                   # kappa_c*eV_J*nm_m^2*d
                   # M*nm_m^2/eV_J/d
  [../]
  [./local_energy]
    # Defines the function for the local free energy density as given in the
    # problem, then converts units and adds scaling factor.
    type = DerivativeParsedMaterial
    f_name = f_loc
    args = c
    constant_names = 'A   B   C   D   E   F   G  eV_J  d'
    constant_expressions = '-2.446831e+04 -2.827533e+04 4.167994e+03 7.052907e+03
                            1.208993e+04 2.568625e+03 -2.354293e+03
                            6.24150934e+18 1e-27'
    function = 'eV_J*d*(A*c+B*(1-c)+C*c*log(c)+D*(1-c)*log(1-c)+
                E*c*(1-c)+F*c*(1-c)*(2*c-1)+G*c*(1-c)*(2*c-1)^2)'
  [../]
[]

[Preconditioning]
  # Preconditioning is required for Newton's method. See wiki page "Solving
  # Phase Field Models" for more information.
  # http://mooseframework.org/wiki/PhysicsModules/PhaseField/SolvingModels/
  [./coupled]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  l_max_its = 30
  l_tol = 1e-6
  nl_max_its = 50
  nl_abs_tol = 1e-9
  end_time = 86400   # 1 day. We only need to run this long enough to verify
                     # the model is working properly.
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type
                         -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly
                         ilu          1'
  dt = 100
[]

[Outputs]
  exodus = true
  console = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_1/ring1_mu_0_2_pen_sm.i

[Mesh]
  file = ring1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]


[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = ring1_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = ring1_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/porous_flow/test/tests/actions/fullsat_brine_except1.i

# Check error when using PorousFlowFullySaturated action,
# attempting to create a Brine material without any mass
# fraction variables.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[GlobalParams]
  block = '0'
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[PorousFlowFullySaturated]
  coupling_type = ThermoHydro
  porepressure = pp
  temperature = temp
  use_brine = true
  nacl_index = 0
  dictator_name = dictator
[]

[Variables]
  [./pp]
    initial_condition = 20E6
  [../]
  [./temp]
    initial_condition = 323.15
  [../]
  [./nacl]
    initial_condition = 0.1047
  [../]
[]

[Kernels]
  # All provided by PorousFlowFullySaturated action
[]

[BCs]
  [./t_bdy]
    type = DirichletBC
    variable = temp
    boundary = 'left right'
    value = 323.15
  [../]
  [./p_bdy]
    type = DirichletBC
    variable = pp
    boundary = 'left right'
    value = 20E6
  [../]
  [./nacl_bdy]
    type = DirichletBC
    variable = nacl
    boundary = 'left right'
    value = 0.1047
  [../]
[]

[Materials]
  # Thermal conductivity
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '3 0 0  0 3 0  0 0 3'
    wet_thermal_conductivity = '3 0 0  0 3 0  0 0 3'
  [../]

  # Specific heat capacity
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 850
    density = 2700
  [../]

  # Permeability
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-13 0 0  0 1E-13 0  0 0 1E-13'
  [../]

  # Porosity
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.3
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  file_base = fullsat_brine_except1
[]

modules/richards/test/tests/gravity_head_1/gh10.i

# unsaturated = true
# gravity = false
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = -1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGnone
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh10
  exodus = true
[]

test/tests/outputs/exodus/variable_output_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./aux]
    family = SCALAR
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 1
  solve_type = PJFNK
[]

[Adaptivity]
  steps = 1
  marker = box
  max_h_level = 2
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = do_nothing
      type = BoxMarker
    [../]
  [../]
[]

[Postprocessors]
  [./aux_pp]
    type = ScalarVariable
    variable = aux
    outputs = none
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  [./exodus]
    type = Exodus
    file_base = new_out
    hide_variables = 'u box aux_pp'
    scalar_as_nodal = true
    execute_scalars_on = none
  [../]
  [./console]
    Type = Console
  [../]
[]

modules/tensor_mechanics/test/tests/truss/truss_hex.i

# This test is designed to check
# whether truss element works well with other multi-dimensional element
# e.g. the hex element in this case, by assigning different brock number
# to different types of elements.
[Mesh]
  type = FileMesh
  file = truss_hex.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./axial_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_over_l]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./area]
    order = CONSTANT
    family = MONOMIAL
#    initial_condition = 1.0
  [../]
  [./react_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./x2]
    type = PiecewiseLinear
    x = '0  1 2 3'
    y = '0 .5 1 1'
  [../]
  [./y2]
    type = PiecewiseLinear
    x = '0 1  2 3'
    y = '0 0 .5 1'
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./fixx2]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]
  [./fixz2]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]

  [./fixDummyHex_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1000
    value = 0
  [../]

  [./fixDummyHex_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1000
    value = 0
  [../]

  [./fixDummyHex_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1000
    value = 0
  [../]
[]

[DiracKernels]
  [./pull]
    type = ConstantPointSource
    value = -25
    point = '0 -2 0'
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./axial_stress]
    type = MaterialRealAux
    block = '1 2'
    property = axial_stress
    variable = axial_stress
  [../]
  [./e_over_l]
    type = MaterialRealAux
    block = '1 2'
    property = e_over_l
    variable = e_over_l
  [../]
  [./area1]
    type = ConstantAux
    block = 1
    variable = area
    value = 1.0
    execute_on = 'initial timestep_begin'
  [../]
  [./area2]
    type = ConstantAux
    block = 2
    variable = area
    value = 0.25
    execute_on = 'initial timestep_begin'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'jacobi   101'

  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10

  dt = 1
  num_steps = 1
  end_time = 1
[]

[Kernels]
  [./truss_x]
    type = StressDivergenceTensorsTruss
    block = '1 2'
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
    area = area
    save_in = react_x
  [../]
  [./truss_y]
    type = StressDivergenceTensorsTruss
    block = '1 2'
    variable = disp_y
    component = 1
    displacements = 'disp_x disp_y disp_z'
    area = area
    save_in = react_y
  [../]
  [./truss_z]
    type = StressDivergenceTensorsTruss
    block = '1 2'
    variable = disp_z
    component = 2
    displacements = 'disp_x disp_y disp_z'
    area = area
    save_in = react_z
  [../]
  [./TensorMechanics]
    block = 1000
    displacements = 'disp_x disp_y disp_z'
  [../]
#  [./hex_x]
#    type = StressDivergenceTensors
#    block = 1000
#    variable = disp_x
#    component = 0
#    displacements = 'disp_x disp_y disp_z'
#  [../]
#  [./hex_y]
#    type = StressDivergenceTensors
#    block = 1000
#    variable = disp_y
#    component = 1
#    displacements = 'disp_x disp_y disp_z'
#  [../]
#  [./hex_z]
#    type = StressDivergenceTensors
#    block = 1000
#    variable = disp_z
#    component = 2
#    displacements = 'disp_x disp_y disp_z'
#  [../]
[]

[Materials]
   [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1000
    youngs_modulus = 1e6
    poissons_ratio = 0
  [../]
  [./strain]
    type = ComputeSmallStrain
    block = 1000
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 1000
  [../]
  [./linelast]
    type = LinearElasticTruss
    block = '1 2'
    displacements = 'disp_x disp_y disp_z'
    youngs_modulus = 1e6
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/execute_on_final/execute_on_final.i

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Problem]
  solve = false
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 4
[]

[Functions]
  [func]
    type = ConstantFunction
    value = 5
  []
[]

[Postprocessors]
  [timestep_end]
    type = FunctionValuePostprocessor
    function = 't'
    execute_on = 'initial timestep_end'
  []
  [final]
    type = FunctionValuePostprocessor
    function = '2*t'
    execute_on = 'final'
  []
[]

[Outputs]
  csv = true
  [on_final]
    type = CSV
    execute_on = final
  []
[]

modules/combined/test/tests/multiphase_mechanics/nonsplit_gradderiv_action.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 5
  xmax = 10
  ymax = 10
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  displacement_gradients = 'gxx gxy gyx gyy'
[]

[Modules]
  [./PhaseField]
    [./DisplacementGradients]
    [../]
  [../]
[]

[AuxVariables]
  [./disp_x]
    [./InitialCondition]
      type = FunctionIC
      function = '0.1*sin(2*x/10*3.14159265359)'
    [../]
  [../]
  [./disp_y]
    [./InitialCondition]
      type = FunctionIC
      function = '0.1*sin(1*y/10*3.14159265359)'
    [../]
  [../]
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
    initial_condition = 0
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = c
  [../]
  [./bulk]
    type = CahnHilliard
    variable = c
    mob_name = M
    f_name = F
  [../]
  [./int]
    type = CHInterface
    variable = c
    mob_name = M
    kappa_name = kappa_c
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'M  kappa_c'
    prop_values = '1  0.1'
  [../]

  [./elasticity_tensor]
    type = ComputeConcentrationDependentElasticityTensor
    c = c
    C0_ijkl = '1.0 1.0'
    C1_ijkl = '3.0 3.0'
    fill_method0 = symmetric_isotropic
    fill_method1 = symmetric_isotropic
  [../]
  [./smallstrain]
    type = ComputeSmallStrain
  [../]
  [./linearelastic_a]
    type = ComputeLinearElasticStress
  [../]
  [./elastic_free_energy]
    type = ElasticEnergyMaterial
    f_name = F
    args = 'c'
    derivative_order = 3
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = NEWTON

  l_max_its = 30
  l_tol = 1.0e-6

  nl_max_its = 15
  nl_rel_tol = 1.0e-7
  nl_abs_tol = 1.0e-10

  num_steps = 2
  dt = 1
[]

[Outputs]
  perf_graph = true
  file_base = nonsplit_gradderiv_out
  exodus = true
[]

modules/combined/test/tests/inelastic_strain/creep/creep_nl1_sm.i

#
# Test for effective strain calculation.
# Boundary conditions from NAFEMS test NL1
#
# This is not a verification test. This is the creep analog of the same test
# in the elas_plas directory. Instead of using the IsotropicPlasticity
# material model this test uses the PowerLawCreep material model.
#
[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  temp = temp
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
  block = 1
[]

[Mesh]
  file = one_elem2.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./temp]
    initial_condition = 600.0
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eff_creep_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./pressure]
    type = MaterialTensorAux
    tensor = stress
    variable =pressure
    quantity = hydrostatic
    execute_on = timestep_end
  [../]
  [./elastic_strain_xx]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_xx
    index = 0
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]
  [./elastic_strain_zz]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_zz
    index = 2
  [../]
  [./creep_strain_xx]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_xx
    index = 0
  [../]
  [./creep_strain_yy]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_yy
    index = 1
  [../]
  [./creep_strain_zz]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_zz
    index = 2
  [../]
  [./tot_strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = tot_strain_xx
    index = 0
  [../]
  [./tot_strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = tot_strain_yy
    index = 1
  [../]
  [./tot_strain_zz]
    type = MaterialTensorAux
    tensor = total_strain
    variable = tot_strain_zz
    index = 2
  [../]
  [./eff_creep_strain]
    type = MaterialRealAux
    property = effective_creep_strain
    variable = eff_creep_strain
  [../]
[]

[Functions]
  [./appl_dispy]
    type = PiecewiseLinear
    x = '0     1.0     2.0'
    y = '0.0 0.25e-4 0.50e-4'
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 101
    value = 0.0
  [../]
  [./origin_x]
    type = DirichletBC
    variable = disp_x
    boundary = 103
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 102
    value = 0.0
  [../]
  [./origin_y]
    type = DirichletBC
    variable = disp_y
    boundary = 103
    value = 0.0
  [../]
  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = appl_dispy
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = '1 2'
    value = 600.0
  [../]
[]

[Materials]
  [./stiff]
    type = SolidModel
    block = 1
    youngs_modulus = 250e9
    poissons_ratio = 0.25
    formulation = NonlinearPlaneStrain
    constitutive_model = powerlawcrp
    increment_calculation = Eigen
  [../]
  [./powerlawcrp]
    type = PowerLawCreepModel
    block = 1
    coefficient = 3.125e-14
    n_exponent = 5.0
    m_exponent = 0.0
    activation_energy = 0.0
  [../]

  [./thermal]
    type = HeatConductionMaterial
    block = 1
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]

  [./density]
    type = Density
    block = 1
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 20

  dt = 1.0
  start_time = 0.0
  num_steps = 100
  end_time = 2.0
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./stress_xy]
    type = ElementAverageValue
    variable = stress_xy
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./pressure]
    type = ElementAverageValue
    variable = pressure
  [../]
  [./el_strain_xx]
    type = ElementAverageValue
    variable = elastic_strain_xx
  [../]
  [./el_strain_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./el_strain_zz]
    type = ElementAverageValue
    variable = elastic_strain_zz
  [../]
  [./crp_strain_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
  [../]
  [./crp_strain_yy]
    type = ElementAverageValue
    variable = creep_strain_yy
  [../]
  [./crp_strain_zz]
    type = ElementAverageValue
    variable = creep_strain_zz
  [../]
  [./eff_creep_strain]
    type = ElementAverageValue
    variable = eff_creep_strain
  [../]
  [./tot_strain_xx]
    type = ElementAverageValue
    variable = tot_strain_xx
  [../]
  [./tot_strain_yy]
    type = ElementAverageValue
    variable = tot_strain_yy
  [../]
  [./tot_strain_zz]
    type = ElementAverageValue
    variable = tot_strain_zz
  [../]
  [./disp_x1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_x
  [../]
  [./disp_x4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_x
  [../]
  [./disp_y1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  file_base=creep_nl1_out
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/simple_contact/sm/merged_rz_sm.i

[Mesh]
  file = merged_rz.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Problem]
  coord_type = RZ
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 1'
    scale_factor = 100
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 10
    value = 0.0
  [../]

  [./right_pressure]
    type = PressureRZ
    variable = disp_x
    component = 0
    boundary = 4
    function = pressure
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    block = 2

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type '
  petsc_options_value = 'lu       '

  line_search = 'none'

  nl_abs_tol = 1e-8

  l_max_its = 20
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = merged_rz_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
    execute_on = 'initial timestep_end linear'
  [../]
[]

modules/tensor_mechanics/test/tests/volumetric_eigenstrain/volumetric_mechanical.i

# This test ensures that the reported volumetric strain for a cube with
# mechanically imposed displacements (through Dirichlet BCs) exactly
# matches that from a version of this test that experiences the same
# defomation, but due to imposed eigenstrains.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./volumetric_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./master]
    use_displaced_mesh = true
    strain = FINITE
    decomposition_method = EigenSolution #Necessary for exact solution
  [../]
[]

[AuxKernels]
  [./volumetric_strain]
    type = RankTwoScalarAux
    scalar_type = VolumetricStrain
    rank_two_tensor = total_strain
    variable = volumetric_strain
  [../]
[]

[Functions]
  [pres_disp]
    type = PiecewiseLinear
    # These values are taken from the displacements in the eigenstrain
    # version of this test. The volume of the cube (which starts out as
    # a 1x1x1 cube) is (1 + disp)^3. At time 2, this is
    # (1.44224957030741)^3, which is 3.0.
    xy_data = '0 0
               1 0.25992104989487
               2 0.44224957030741'
  []
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = right
    function = pres_disp
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pres_disp
  [../]
  [./front]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = pres_disp
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./finite_strain_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./volumetric_change]
    type = GenericFunctionMaterial
    prop_names = volumetric_change
    prop_values = t
  [../]
[]

[Postprocessors]
  [./vol]
    type = VolumePostprocessor
    use_displaced_mesh = true
    execute_on = 'initial timestep_end'
  [../]
  [./volumetric_strain]
    type = ElementalVariableValue
    variable = volumetric_strain
    elementid = 0
  [../]
  [./disp_right]
    type = NodalMaxValue
    variable = disp_x
    boundary = right
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 2.0
  dt = 1.0
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/phase_field/examples/anisotropic_interfaces/GrandPotentialTwophaseAnisotropy.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = -4
  xmax = 4
  ymin = -4
  ymax = 4
  uniform_refine = 2
[]

[GlobalParams]
  radius = 0.5
  int_width = 0.3
  x1 = 0
  y1 = 0
  derivative_order = 2
[]

[Variables]
  [./w]
  [../]
  [./etaa0]
  [../]
  [./etab0]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    v = 'etaa0 etab0'
  [../]
[]

[ICs]
  [./w]
    type = SmoothCircleIC
    variable = w
    # note w = A*(c-cleq), A = 1.0, cleq = 0.0 ,i.e., w = c (in the matrix/liquid phase)
    outvalue = -4.0
    invalue = 0.0
  [../]
  [./etaa0]
    type = SmoothCircleIC
    variable = etaa0
    #Solid phase
    outvalue = 0.0
    invalue = 1.0
  [../]
  [./etab0]
    type = SmoothCircleIC
    variable = etab0
    #Liquid phase
    outvalue = 1.0
    invalue = 0.0
  [../]
[]

[BCs]
  [./Periodic]
    [./w]
      variable = w
      auto_direction = 'x y'
    [../]
    [./etaa0]
      variable = etaa0
      auto_direction = 'x y'
    [../]
    [./etab0]
      variable = etab0
      auto_direction = 'x y'
    [../]
  [../]
[]

[Kernels]
# Order parameter eta_alpha0
  [./ACa0_bulk]
    type = ACGrGrMulti
    variable = etaa0
    v =           'etab0'
    gamma_names = 'gab'
  [../]
  [./ACa0_sw]
    type = ACSwitching
    variable = etaa0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etab0 w'
  [../]
  [./ACa0_int1]
    type = ACInterface2DMultiPhase1
    variable = etaa0
    etas = 'etab0'
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
    d2kappadgrad_etaa_name = d2kappadgrad_etaa
  [../]
  [./ACa0_int2]
    type = ACInterface2DMultiPhase2
    variable = etaa0
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
  [../]
  [./ea0_dot]
    type = TimeDerivative
    variable = etaa0
  [../]
# Order parameter eta_beta0
  [./ACb0_bulk]
    type = ACGrGrMulti
    variable = etab0
    v =           'etaa0'
    gamma_names = 'gab'
  [../]
  [./ACb0_sw]
    type = ACSwitching
    variable = etab0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etaa0 w'
  [../]
  [./ACb0_int1]
    type = ACInterface2DMultiPhase1
    variable = etab0
    etas = 'etaa0'
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
    d2kappadgrad_etaa_name = d2kappadgrad_etab
  [../]
  [./ACb0_int2]
    type = ACInterface2DMultiPhase2
    variable = etab0
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
  [../]
  [./eb0_dot]
    type = TimeDerivative
    variable = etab0
  [../]
#Chemical potential
  [./w_dot]
    type = SusceptibilityTimeDerivative
    variable = w
    f_name = chi
  [../]
  [./Diffusion]
    type = MatDiffusion
    variable = w
    diffusivity = Dchi
  [../]
  [./coupled_etaa0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etaa0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0'
  [../]
  [./coupled_etab0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etab0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0'
  [../]
[]

[Materials]
  [./ha]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = ha
    all_etas = 'etaa0 etab0'
    phase_etas = 'etaa0'
  [../]
  [./hb]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = hb
    all_etas = 'etaa0 etab0'
    phase_etas = 'etab0'
  [../]
  [./omegaa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegaa
    material_property_names = 'Vm ka caeq'
    function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
  [../]
  [./omegab]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegab
    material_property_names = 'Vm kb cbeq'
    function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq'
  [../]
  [./rhoa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhoa
    material_property_names = 'Vm ka caeq'
    function = 'w/Vm^2/ka + caeq/Vm'
  [../]
  [./rhob]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhob
    material_property_names = 'Vm kb cbeq'
    function = 'w/Vm^2/kb + cbeq/Vm'
  [../]
  [./kappaa]
    type = InterfaceOrientationMultiphaseMaterial
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
    d2kappadgrad_etaa_name = d2kappadgrad_etaa
    etaa = etaa0
    etab = etab0
    outputs = exodus
    output_properties = 'kappaa'
  [../]
  [./kappab]
    type = InterfaceOrientationMultiphaseMaterial
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
    d2kappadgrad_etaa_name = d2kappadgrad_etab
    etaa = etab0
    etab = etaa0
    outputs = exodus
    output_properties = 'kappab'
  [../]
  [./const]
    type = GenericConstantMaterial
    prop_names =  'L   D    chi  Vm   ka    caeq kb    cbeq  gab mu'
    prop_values = '1.0 1.0  0.1  1.0  10.0  0.1  10.0  0.9   4.5 10.0'
  [../]
  [./Mobility]
    type = ParsedMaterial
    f_name = Dchi
    material_property_names = 'D chi'
    function = 'D*chi'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      31'
  l_tol = 1.0e-3
  l_max_its = 30
  nl_max_its = 15
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1e-8
  end_time = 10.0
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.0005
    cutback_factor = 0.7
    growth_factor = 1.2
  [../]
[]

[Adaptivity]
 initial_steps = 5
 max_h_level = 3
 initial_marker = err_eta
 marker = err_bnds
[./Markers]
   [./err_eta]
     type = ErrorFractionMarker
     coarsen = 0.3
     refine = 0.95
     indicator = ind_eta
   [../]
   [./err_bnds]
     type = ErrorFractionMarker
     coarsen = 0.3
     refine = 0.95
     indicator = ind_bnds
   [../]
 [../]
 [./Indicators]
   [./ind_eta]
     type = GradientJumpIndicator
     variable = etaa0
    [../]
    [./ind_bnds]
      type = GradientJumpIndicator
      variable = bnds
   [../]
 [../]
[]

[Outputs]
  interval = 10
  exodus = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/fromsub_fixed_meshes_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 0.1
  ymax = 0.1
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Functions]
  [./disp_fun]
    type = ParsedFunction
    value = 2*t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./disp_kern]
    type = FunctionAux
    variable = disp_x
    function = disp_fun
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/nodalkernels/high_order_time_integration/high_order_time_integration.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[AuxVariables]
  [./exact_solution]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[NodalKernels]
  [./td]
    type = TimeDerivativeNodalKernel
    variable = v
  [../]
  [./f]
    type = UserForcingFunctionNodalKernel
    variable = v
    function = t*t*t+4
  [../]
[]

[AuxKernels]
  [./exact]
    type = FunctionAux
    variable = exact_solution
    function = exact_solution_function
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Functions]
  [./exact_solution_function]
    type = ParsedFunction
    value = (1.0/4.0)*(16*t+t*t*t*t)
  [../]
[]

[Postprocessors]
  [./error]
    type = NodalL2Error
    variable = v
    function = exact_solution_function
  [../]
[]

[Executioner]
  type = Transient
  end_time = 10
  dt = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  scheme = 'crank-nicolson'
[]

[Outputs]
  exodus = true
  csv = true
[]

test/tests/functions/linear_combination_function/lcf_grad.i

# LinearCombinationFunction function test
# See [Functions] block for a description of the tests

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  nx = 3
  ny = 3
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./the_linear_combo_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./the_linear_combo_y]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./the_linear_combo_x]
    type = FunctionGradAux
    dimension_index = x
    variable = the_linear_combo_x
    function = the_linear_combo
  [../]
  [./the_linear_combo_y]
    type = FunctionGradAux
    dimension_index = y
    variable = the_linear_combo_y
    function = the_linear_combo
  [../]
[]


[Functions]
  [./xtimes]
    type = ParsedGradFunction
    value = '1.1*x+y'
    grad_x = '1.1'
    grad_y = '1'
  [../]

  [./twoxplus1]
    type = ParsedGradFunction
    value = '2*x+1'
    grad_x = '2'
  [../]

  [./tover2]
    type = ParsedGradFunction
    value = '0.5*t-y*7'
    grad_y = '-7'
  [../]

  [./the_linear_combo]
    type = LinearCombinationFunction
    functions = 'xtimes twoxplus1 tover2'
    w = '3 -1.2 3'
  [../]

  [./should_be_answer_x]
    type = ParsedFunction
    value = '3*1.1-1.2*2'
  [../]
  [./should_be_answer_y]
    type = ParsedFunction
    value = '3*1+3*(-7)'
  [../]
[]

[Postprocessors]
  [./should_be_zero_x]
    type = ElementL2Error
    function = should_be_answer_x
    variable = the_linear_combo_x
  [../]
  [./should_be_zero_y]
    type = ElementL2Error
    function = should_be_answer_y
    variable = the_linear_combo_y
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = lcf_grad
  hide = dummy
  exodus = false
  csv = true
[]

modules/porous_flow/test/tests/dirackernels/pls03.i

# Test that the upwinding works correctly.
#
# A poly-line sink sits at the centre of the element.
# It has length=4 and weight=0.5, and extracts fluid
# at a constant rate of
# (1 * relative_permeability) kg.m^-1.s^-1
# Since it sits at the centre of the element, it extracts
# equally from each node, so the rate of extraction from
# each node is
# (0.5 * relative_permeability) kg.s^-1
# including the length and weight effects.
#
# There is no fluid flow.
#
# The initial conditions are such that all nodes have
# relative_permeability=0, except for one which has
# relative_permeaility = 1.  Therefore, all nodes should
# remain at their initial porepressure, except the one.
#
# The porosity is 0.1, and the elemental volume is 2,
# so the fluid mass at the node in question = 0.2 * density / 4,
# where the 4 is the number of nodes in the element.
# In this simulation density = dens0 * exp(P / bulk), with
# dens0 = 100, and bulk = 20 MPa.
# The initial porepressure P0 = 10 MPa, so the final (after
# 1 second of simulation) is
# P(t=1) = 8.748592 MPa
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 2
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    #function = if((x<1)&(y<0.5),1E7,-1E7)
    function = if((x<1)&(y>0.5),1E7,-1E7)
    #function = if((x>1)&(y<0.5),1E7,-1E7)
    #function = if((x>1)&(y>0.5),1E7,-1E7)
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pls_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e7
      density0 = 100
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityFLAC
    phase = 0
    m = 2
    s_res = 0.99
    sum_s_res = 0.99
  [../]
[]

[DiracKernels]
  [./pls]
    type = PorousFlowPolyLineSink
    fluid_phase = 0
    point_file = pls03.bh
    use_relative_permeability = true
    line_length = 4
    SumQuantityUO = pls_total_outflow_mass
    variable = pp
    p_or_t_vals = '0 1E7'
    fluxes = '1 1'
  [../]
[]

[Postprocessors]
  [./pls_report]
    type = PorousFlowPlotQuantity
    uo = pls_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p00]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
  [./p01]
    type = PointValue
    variable = pp
    point = '0 1 0'
    execute_on = timestep_end
  [../]
  [./p20]
    type = PointValue
    variable = pp
    point = '2 0 0'
    execute_on = timestep_end
  [../]
  [./p21]
    type = PointValue
    variable = pp
    point = '2 1 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 pls_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
  dt = 1
  solve_type = NEWTON
[]

[Outputs]
  file_base = pls03
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/tensor_mechanics/test/tests/domain_integral_thermal/interaction_integral_2d_rot.i

#This problem from [Wilson 1979] tests the thermal strain term in the
#interaction integral
#
#theta_e = 10 degrees C; a = 252; E = 207000; nu = 0.3; alpha = 1.35e-5
#
#With uniform_refine = 3, KI converges to
#KI = 5.602461e+02 (interaction integral)
#KI = 5.655005e+02 (J-integral)
#
#Both are in good agreement with [Shih 1986]:
#average_value = 0.4857 = KI / (sigma_theta * sqrt(pi * a))
#sigma_theta = E * alpha * theta_e / (1 - nu)
# = 207000 * 1.35e-5 * 10 / (1 - 0.3) = 39.9214
#KI = average_value * sigma_theta * sqrt(pi * a) = 5.656e+02
#
#References:
#W.K. Wilson, I.-W. Yu, Int J Fract 15 (1979) 377-387
#C.F. Shih, B. Moran, T. Nakamura, Int J Fract 30 (1986) 79-102

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = False
[]

[Mesh]
  displacements = 'disp_x disp_y'
  [file_mesh]
    type = FileMeshGenerator
    file = crack2d.e
  []
  [rotate]
    type = TransformGenerator
    transform = ROTATE
    vector_value = '0 0 90'
    input = file_mesh
  []
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*y/504)
  [../]
[]

[DomainIntegral]
  integrals = 'JIntegral InteractionIntegralKI'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '0 1 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  convert_J_to_K = true
  symmetry_plane = 0
  incremental = true

  # interaction integral parameters
  disp_x = disp_x
  disp_y = disp_y
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  temperature = temp
  eigenstrain_names = thermal_expansion
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
    eigenstrain_names = thermal_expansion
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]
  [./crack_x]
    type = DirichletBC
    variable = disp_x
    boundary = 100
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 400
    value = 0.0
  [../]
  [./no_y1]
    type = DirichletBC
    variable = disp_y
    boundary = 900
    value = 0.0
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 0.0
    thermal_expansion_coeff = 1.35e-5
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]
[]


[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 40

   nl_rel_step_tol= 1e-10
   nl_rel_tol = 1e-10


   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = interaction_integral_2d_rot_out
  exodus = true
  csv = true
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

modules/tensor_mechanics/test/tests/multi/three_surface13.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 2.0E-6m in y direction and 0E-6 in z direction.
# trial stress_yy = 2 and stress_zz = 0
#
# Then SimpleTester1 should activate and the algorithm will return to
# stress_yy=1
# internal1 should be 1

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2.0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface13
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/j2_plasticity/small_deform3.i

# UserObject J2 test
# apply uniform compression in x direction to give
# trial stress_xx = -7, so sqrt(3*J2) = 7
# with zero Poisson's ratio, this should return to
# stress_xx = -3, stress_yy = -2 = stress_zz
# (note that stress_xx - stress_yy = stress_xx - stress_zz = -1, so sqrt(3*j2) = 1,
#  and that the mean stress remains = -7/3)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-3.5E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./j2]
    type = TensorMechanicsPlasticJ2
    yield_strength = str
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = j2
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/porous_flow/test/tests/fluidstate/brineco2.i

# Tests correct calculation of properties in PorousFlowBrineCO2

[Mesh]
  [./mesh]
    type = GeneratedMeshGenerator
    dim = 2
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
  temperature = 30
[]

[Variables]
  [./pgas]
    initial_condition = 20e6
  [../]
  [./z]
     initial_condition = 0.2
  [../]
[]

[AuxVariables]
  [./xnacl]
    initial_condition = 0.1
  [../]
  [./pressure_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./internal_energy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./internal_energy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x0_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./pressure_water]
    type = PorousFlowPropertyAux
    variable = pressure_water
    property = pressure
    phase = 0
    execute_on = timestep_end
  [../]
  [./pressure_gas]
    type = PorousFlowPropertyAux
    variable = pressure_gas
    property = pressure
    phase = 1
    execute_on = timestep_end
  [../]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation_water
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./density_water]
    type = PorousFlowPropertyAux
    variable = density_water
    property = density
    phase = 0
    execute_on = timestep_end
  [../]
  [./density_gas]
    type = PorousFlowPropertyAux
    variable = density_gas
    property = density
    phase = 1
    execute_on = timestep_end
  [../]
  [./viscosity_water]
    type = PorousFlowPropertyAux
    variable = viscosity_water
    property = viscosity
    phase = 0
    execute_on = timestep_end
  [../]
  [./viscosity_gas]
    type = PorousFlowPropertyAux
    variable = viscosity_gas
    property = viscosity
    phase = 1
    execute_on = timestep_end
  [../]
  [./enthalpy_water]
    type = PorousFlowPropertyAux
    variable = enthalpy_water
    property = enthalpy
    phase = 0
    execute_on = timestep_end
  [../]
  [./enthalpy_gas]
    type = PorousFlowPropertyAux
    variable = enthalpy_gas
    property = enthalpy
    phase = 1
    execute_on = timestep_end
  [../]
  [./internal_energy_water]
    type = PorousFlowPropertyAux
    variable = internal_energy_water
    property = internal_energy
    phase = 0
    execute_on = timestep_end
  [../]
  [./internal_energy_gas]
    type = PorousFlowPropertyAux
    variable = internal_energy_gas
    property = internal_energy
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1_water]
    type = PorousFlowPropertyAux
    variable = x1_water
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./x1_gas]
    type = PorousFlowPropertyAux
    variable = x1_gas
    property = mass_fraction
    phase = 1
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./x0_water]
    type = PorousFlowPropertyAux
    variable = x0_water
    property = mass_fraction
    phase = 0
    fluid_component = 0
    execute_on = timestep_end
  [../]
  [./x0_gas]
    type = PorousFlowPropertyAux
    variable = x0_gas
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = timestep_end
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    temperature_unit = Celsius
    xnacl = xnacl
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./density_water]
    type = ElementIntegralVariablePostprocessor
    variable = density_water
  [../]
  [./density_gas]
    type = ElementIntegralVariablePostprocessor
    variable = density_gas
  [../]
  [./viscosity_water]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_water
  [../]
  [./viscosity_gas]
    type = ElementIntegralVariablePostprocessor
    variable = viscosity_gas
  [../]
  [./enthalpy_water]
    type = ElementIntegralVariablePostprocessor
    variable = enthalpy_water
  [../]
  [./enthalpy_gas]
    type = ElementIntegralVariablePostprocessor
    variable = enthalpy_gas
  [../]
  [./internal_energy_water]
    type = ElementIntegralVariablePostprocessor
    variable = internal_energy_water
  [../]
  [./internal_energy_gas]
    type = ElementIntegralVariablePostprocessor
    variable = internal_energy_gas
  [../]
  [./x1_water]
    type = ElementIntegralVariablePostprocessor
    variable = x1_water
  [../]
  [./x0_water]
    type = ElementIntegralVariablePostprocessor
    variable = x0_water
  [../]
  [./x1_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x1_gas
  [../]
  [./x0_gas]
    type = ElementIntegralVariablePostprocessor
    variable = x0_gas
  [../]
  [./sg]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_gas
  [../]
  [./sw]
    type = ElementIntegralVariablePostprocessor
    variable = saturation_water
  [../]
  [./pwater]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_water
  [../]
  [./pgas]
    type = ElementIntegralVariablePostprocessor
    variable = pressure_gas
  [../]
  [./x0mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    phase = '0 1'
  [../]
  [./x1mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = '0 1'
  [../]
[]

[Outputs]
  csv = true
  file_base = brineco2
  execute_on = 'TIMESTEP_END'
  perf_graph = false
[]

test/tests/geomsearch/3d_moving_penetration/pl_test4q.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4q.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.025
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test4q_out
  exodus = true
[]

test/tests/adaptivity/recompute_markers_during_cycles/recompute_markers_during_cycles.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  cycles_per_step = 4
  marker = circle_marker
  max_h_level = 2
  recompute_markers_during_cycles = true
  [./Markers]
    [./circle_marker]
      type = CircleMarker
      point = '0.5 0.5 0'
      radius = 0.1
      inside = refine
      outside = do_nothing
    [../]
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    print_mesh_changed_info = true
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_4/plane4_template2.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane4_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 200
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/tensor_mechanics/test/tests/mean_cap_TC/small_deform4.i

# apply nonuniform compression in x, y and z directions such that
# trial_stress(0, 0) = 2
# trial_stress(1, 1) = -8
# trial_stress(2, 2) = -10
# With compressive_strength = -1, the algorithm should return to trace(stress) = -1, or
# stress(0, 0) = 7
# stress(1, 1) = -3
# stress(2, 2) = -5

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-7*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-4E-7*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-5E-7*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
[]

[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningConstant
    value = -1
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
    use_custom_returnMap = true
    use_custom_cto = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mean_cap]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = cap
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform4
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/postprocessors/pps_interval/pps_bad_interval3.i

[Mesh]
  file = square-2x2-nodeids.e
  # This test can only be run with renumering disabled, so the
  # NodalVariableValue postprocessor's node id is well-defined.
  allow_renumbering = false
[]

[Variables]
  active = 'u v'

  [./u]
    order = SECOND
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Functions]
  active = 'force_fn exact_fn left_bc'

  [./force_fn]
    type = ParsedFunction
    value = '1-x*x+2*t'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = '(1-x*x)*t'
  [../]

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = '
    time_u diff_u ffn_u
    time_v diff_v'

  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'all_u left_v right_v'

  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = exact_fn
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '2'
    value = 0
  [../]
[]

[Postprocessors]
  active = 'l2 node1 node4'

  [./l2]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./node1]
    type = NodalVariableValue
    variable = u
    nodeid = 15
  [../]

  [./node4]
    type = NodalVariableValue
    variable = v
    nodeid = 10
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = ignore_bad
  interval = 2
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform3.i

# Plastic deformation, tensile failure
# With Young = 10, poisson=0.25 (Lame lambda=4, mu=4)
# applying the following
# deformation to the zmax surface of a unit cube:
# disp_x = 4*t
# disp_y = 3*t
# disp_z = t
# should yield trial stress:
# stress_zz = 12*t
# stress_zx = 16*t
# stress_zy = 12*t
# Use tensile strength = 6, we should return to stress_zz = 6,
# and stress_xx = stress_yy = 2*t up to t=1 when the system is completely
# plastic, so these stress components will not change
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 4*t
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 3*t
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = t
  [../]
[]

[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 80
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 6
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 40
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '4 4'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 2
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform3
  csv = true
[]

examples/ex09_stateful_materials/ex09.i

[Mesh]
  file = square.e
  uniform_refine = 4
[]

[Variables]
  [./convected]
    order = FIRST
    family = LAGRANGE
  [../]

  [./diffused]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./convected_ie]
    type = TimeDerivative
    variable = convected
  [../]

  [./example_diff]
    # This Kernel uses "diffusivity" from the active material
    type = ExampleDiffusion
    variable = convected
  [../]

  [./conv]
    type = ExampleConvection
    variable = convected
    some_variable = diffused
  [../]

  [./diffused_ie]
    type = TimeDerivative
    variable = diffused
  [../]

  [./diff]
    type = Diffusion
    variable = diffused
  [../]
[]

[BCs]
  [./left_convected]
    type = DirichletBC
    variable = convected
    boundary = 'left'
    value = 0
  [../]

  [./right_convected]
    type = DirichletBC
    variable = convected
    boundary = 'right'
    value = 1

    some_var = diffused
  [../]

  [./left_diffused]
    type = DirichletBC
    variable = diffused
    boundary = 'left'
    value = 0
  [../]

  [./right_diffused]
    type = DirichletBC
    variable = diffused
    boundary = 'right'
    value = 1
  [../]

[]

[Materials]
  [./example_material]
    type = ExampleMaterial
    block = 1
    initial_diffusivity = 0.05
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  num_steps = 10
  dt = 1.0
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialInterface.i

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Materials]
  [./iface]
    # reproduce the parameters from GrandPotentialMultiphase.i
    type = GrandPotentialInterface
    gamma_names = 'gbb gab'
    sigma       = '0.4714  0.6161' # Ratio of 1:1.307 to obtain dihedral angle of 135deg
    width       = 2.8284
  [../]
[]

[VectorPostprocessors]
  [./mat]
    type = MaterialVectorPostprocessor
    material = iface
    elem_ids = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Problem]
  solve = false
[]

[Outputs]
  csv = true
  execute_on = TIMESTEP_END
[]

modules/rdg/test/tests/advection_1d/rdgP0.i

# This test demonstrates the advection of a tracer in 1D using the RDG module.
# There is no slope limiting.  Changing the SlopeLimiting scheme to minmod, mc,
# or superbee means that a linear reconstruction is performed, and the slope
# limited according to the scheme chosen.  Doing this produces RDG(P0P1) and
# substantially reduces numerical diffusion

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[Variables]
  [./tracer]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[ICs]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[UserObjects]
  [./lslope]
    type = AEFVSlopeLimitingOneD
    execute_on = 'linear'
    scheme = 'none' #none | minmod | mc | superbee
    u = tracer
  [../]

  [./internal_side_flux]
    type = AEFVUpwindInternalSideFlux
    execute_on = 'linear'
    velocity = 0.1
  [../]

  [./free_outflow_bc]
    type = AEFVFreeOutflowBoundaryFlux
    execute_on = 'linear'
    velocity = 0.1
  [../]
[]

[Kernels]
  [./dot]
    type = TimeDerivative
    variable = tracer
  [../]
[]
[DGKernels]
  [./concentration]
    type = AEFVKernel
    variable = tracer
    component = 'concentration'
    flux = internal_side_flux
    u = tracer
  [../]
[]

[BCs]
  [./concentration]
    type = AEFVBC
    boundary = 'left right'
    variable = tracer
    component = 'concentration'
    flux = free_outflow_bc
    u = tracer
  [../]
[]

[Materials]
  [./aefv]
    type = AEFVMaterial
    slope_limiting = lslope
    u = tracer
  [../]
[]


[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 101
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  end_time = 6
  dt = 6E-1
  nl_abs_tol = 1E-8
  timestep_tolerance = 1E-3
[]

[Outputs]
  #exodus = true
  csv = true
  execute_on = final
[]

modules/combined/test/tests/internal_volume/hex8.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a space considering
#   an embedded volume inside.
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total volume
#   is 7.
#
# The internal volume is then adjusted by a piecewise linear time varying
# function.  Thus, the total volume is 7 plus the addition at the particular
# time.
#
#  Time |  Addition  | Total volume
#   0   |    0.0     |     7.0
#   1   |    3.0     |    10.0
#   2   |    7.0     |    14.0
#   3   |   -3.0     |     4.0
#
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = meshes/hex8.e
[]

[Functions]
  [./step]
    type = PiecewiseLinear
    x = '0. 1. 2. 3.'
    y = '0. 0. 1e-2 0.'
    scale_factor = 0.5
  [../]
  [./addition]
    type = PiecewiseLinear
    x = '0. 1. 2. 3.'
    y = '0. 3. 7. -3.'
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    volumetric_locking_correction = true
    incremental = true
    strain = FINITE
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./prescribed_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 100
    function = step
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  dt = 1.0
  end_time = 3.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 100
    addition = addition
    execute_on = 'initial timestep_end'
  [../]

  [./dispZ]
    type = ElementAverageValue
    block = '1 2'
    variable = disp_z
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

test/tests/multiapps/initial_failure/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    execute_on = initial
    input_files = sub.i
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update24.i

# MC update version, with only MohrCoulomb, cohesion=40, friction angle = 35deg, psi = 5deg, smoothing_tol = 0.5
# Tensile strength = 1MPa
# Lame lambda = 1E3.  Lame mu = 1.3E3

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E2
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E8
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 4E1
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '100.1 0.1 -0.2  0.1 0.9 0  -0.2 0 1.1'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/richards/test/tests/dirac/bh_fu_05.i

# unsaturated
# injection
# fullyupwind
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  sat_UO = Saturation
  seff_UO = Seff1VG
  SUPG_UO = SUPGstandard
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '500 500 1E1'
    x = '4000 5000 6500'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh03.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = -1
    fully_upwind = true
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = -2E5
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]

[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-12 0 0  0 1E-12 0  0 0 1E-12'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 6500
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  file_base = bh_fu_05
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/solid_mechanics/test/tests/interaction_integral_benchmark/input.i

# Uses InteractionIntegralBenchmarkBC to test the mixed-mode stress intensity
# factor capability. InteractionIntegralBenchmarkBC applies a displacement
# field for which KI = KII = KIII = 1.0. Using the option 2d = true gives a
# q field that is constant along the tangent and returns Ki = 1.0 for all i.
# To get the correct value for all nodes with 2d = false, the mesh around the
# crack tip must be refined and the q-function radii must be reduced by at
# least two orders of magnitude.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = 360degree_model.e
[]

[Problem]
  type = FEProblem
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Functions]
  [./kifunc]
    type = PiecewiseLinear
    x = '0.0 1.0 2.0'
    y = '0.0 1.0 2.0'
  [../]
[]

[DomainIntegral]
  integrals = 'JIntegral InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 1001
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '0.5 1.0 1.5 2.0'
  radius_outer = '1.0 1.5 2.0 2.5'
  youngs_modulus = 30000
  poissons_ratio = 0.3
  block = 1
  2d = true
  axis_2d = 2
  equivalent_k = True
  incremental = true
  solid_mechanics = true
[]

[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dq_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dq_y]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dq_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./all_x]
    type = InteractionIntegralBenchmarkBC
    variable = disp_x
    component = x
    boundary = 1
    KI_function = kifunc
    KII_function = 1.0
    KIII_function = 1.0
    youngs_modulus = 30000
    poissons_ratio = 0.3
    crack_front_definition = crackFrontDefinition
    crack_front_point_index = 0
  [../]

  [./all_y]
    type = InteractionIntegralBenchmarkBC
    variable = disp_y
    component = y
    boundary = 1
    KI_function = kifunc
    KII_function = 1.0
    KIII_function = 1.0
    youngs_modulus = 30000
    poissons_ratio = 0.3
    crack_front_definition = crackFrontDefinition
    crack_front_point_index = 0
  [../]

  [./all_z]
    type = InteractionIntegralBenchmarkBC
    variable = disp_z
    component = z
    boundary = 1
    KI_function = kifunc
    KII_function = 1.0
    KIII_function = 1.0
    youngs_modulus = 30000
    poissons_ratio = 0.3
    crack_front_definition = crackFrontDefinition
    crack_front_point_index = 0
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 30000
    poissons_ratio = 0.3
    compute_JIntegral = true
  [../]
[]


[Executioner]

  type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-3
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 2
  num_steps = 2

[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]

  [./nl_its]
    type = NumNonlinearIterations
  [../]

  [./lin_its]
    type = NumLinearIterations
  [../]

[]


[Outputs]
  execute_on = 'timestep_end'
  file_base = 360degree_model_out
  exodus = true
  csv = true
[]

modules/richards/test/tests/dirac/bh03.i

# fully-saturated
# injection
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 1E7
    point_file = bh03.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = -1
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 0
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]

[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-12 0 0  0 1E-12 0  0 0 1E-12'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON

[]

[Outputs]
  file_base = bh03
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/navier_stokes/test/tests/ins/jeffery_hamel/wedge_natural.i

# This input file solves the Jeffery-Hamel problem with the exact
# solution's outlet BC replaced by a natural BC.  This problem does
# not converge to the analytical solution, although the flow at the
# outlet still "looks" reasonable.
[GlobalParams]
  gravity = '0 0 0'

  # Params used by the WedgeFunction for computing the exact solution.
  # The value of K is only required for comparing the pressure to the
  # exact solution, and is computed by the associated jeffery_hamel.py
  # script.
  alpha_degrees = 15
  Re = 30
  K = -9.78221333616
  f = f_theta
[]

[Mesh]
  file = wedge_8x12.e
[]

[Variables]
  [./vel_x]
    order = SECOND
    family = LAGRANGE
  [../]
  [./vel_y]
    order = SECOND
    family = LAGRANGE
  [../]
  [./p]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./mass]
    type = INSMass
    variable = p
    u = vel_x
    v = vel_y
    p = p
  [../]
  [./x_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_x
  [../]
  [./x_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_x
    u = vel_x
    v = vel_y
    p = p
    component = 0
  [../]
  [./y_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_y
  [../]
  [./y_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_y
    u = vel_x
    v = vel_y
    p = p
    component = 1
  [../]
[]

[BCs]
  [./vel_x_no_slip]
    type = DirichletBC
    variable = vel_x
    boundary = 'top_wall bottom_wall'
    value = 0.0
  [../]
  [./vel_y_no_slip]
    type = DirichletBC
    variable = vel_y
    boundary = 'top_wall bottom_wall'
    value = 0.0
  [../]
  [./vel_x_inlet]
    type = FunctionDirichletBC
    variable = vel_x
    boundary = 'inlet'
    function = 'vel_x_exact'
  [../]
  [./vel_y_inlet]
    type = FunctionDirichletBC
    variable = vel_y
    boundary = 'inlet'
    function = 'vel_y_exact'
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 1
    prop_names = 'rho mu'
    prop_values = '1  1'
  [../]
[]

[Preconditioning]
  [./SMP_NEWTON]
    type = SMP
    full = true
    solve_type = NEWTON
  [../]
[]

[Executioner]
  type = Transient
  dt = 1.e-2
  dtmin = 1.e-2
  num_steps = 5
  petsc_options_iname = '-ksp_gmres_restart -pc_type -sub_pc_type -sub_pc_factor_levels'
  petsc_options_value = '300                bjacobi  ilu          4'
  line_search = none
  nl_rel_tol = 1e-13
  nl_abs_tol = 1e-11
  nl_max_its = 10
  l_tol = 1e-6
  l_max_its = 300
[]

[Outputs]
  exodus = true
[]

[Functions]
  [./f_theta]
    # Non-dimensional solution values f(eta), 0 <= eta <= 1 for
    # alpha=15deg, Re=30.  Note: this introduces an input file
    # ordering dependency: this Function must appear *before* the two
    # function below which use it since apparently proper dependency
    # resolution is not done in this scenario.
    type = PiecewiseLinear
    data_file = 'f.csv'
    format = 'columns'
  [../]
  [./vel_x_exact]
    type = WedgeFunction
    var_num = 0
    mu = 1
    rho = 1
  [../]
  [./vel_y_exact]
    type = WedgeFunction
    var_num = 1
    mu = 1
    rho = 1
  [../]
[]

modules/phase_field/test/tests/free_energy_material/MathFreeEnergy_split.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  xmin = 0.0
  xmax = 30.0
  ymin = 0.0
  ymax = 30.0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = CrossIC
      x1 = 0.0
      x2 = 30.0
      y1 = 0.0
      y2 = 30.0
    [../]
  [../]
  [./w]
  [../]
[]

[Preconditioning]
active = 'SMP'
  [./PBP]
   type = PBP
   solve_order = 'w c'
   preconditioner = 'AMG ASM'
   off_diag_row = 'c '
   off_diag_column = 'w '
  [../]

  [./SMP]
   type = SMP
   coupled_groups = 'c,w'
  [../]
[]

[Kernels]
  [./cres]
    type = SplitCHParsed
    variable = c
    kappa_name = kappa_c
    w = w
    f_name = F
  [../]

  [./wres]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]

  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[BCs]
  [./Periodic]
    [./top_bottom]
      primary = 0
      secondary = 2
      translation = '0 30.0 0'
    [../]

    [./left_right]
      primary = 1
      secondary = 3
      translation = '-30.0 0 0'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 2.0'
  [../]

  [./free_energy]
    type = MathFreeEnergy
    f_name = F
    c = c
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  l_max_its = 30
  l_tol = 1.0e-3

  nl_max_its = 50
  nl_rel_tol = 1.0e-10

  dt = 10.0
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/auxkernels/principalstress.i

[Mesh]
  type = GeneratedMesh
  elem_type = HEX8
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin=0.0
  xmax=1.0
  ymin=0.0
  ymax=1.0
  zmin=0.0
  zmax=1.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Materials]
  [./fplastic]
    type = FiniteStrainPlasticMaterial
    block = 0
    yield_stress='0. 445. 0.05 610. 0.1 680. 0.38 810. 0.95 920. 2. 950.'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '2.827e5 1.21e5 1.21e5 2.827e5 1.21e5 2.827e5 0.808e5 0.808e5 0.808e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./front]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 't'
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = right
    function = '-0.5*t'
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./peeq]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_max]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_mid]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_min]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./peeq]
    type = RankTwoScalarAux
    rank_two_tensor = plastic_strain
    variable = peeq
    scalar_type = EffectiveStrain
  [../]
  [./stress_max]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = stress_max
    scalar_type = MaxPrincipal
  [../]
  [./stress_mid]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = stress_mid
    scalar_type = MidPrincipal
  [../]
  [./stress_min]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = stress_min
    scalar_type = MinPrincipal
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./peeq]
    type = ElementAverageValue
    variable = peeq
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./stress_max]
    type = ElementAverageValue
    variable = stress_max
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./stress_mid]
    type = ElementAverageValue
    variable = stress_mid
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./stress_min]
    type = ElementAverageValue
    variable = stress_min
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Executioner]

  type = Transient

  dt=0.1
  dtmin=0.1
  dtmax=1
  end_time=1.0

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10
[]


[Outputs]
  exodus = true
  csv = true
[]

modules/chemical_reactions/test/tests/desorption/mollified_langmuir_desorption.i

# testing the entire desorption DEs with mollification
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = 0
  xmax = 1
[]

[Variables]
  [./pressure]
  [../]
  [./conc]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./p_ic]
    type = ConstantIC
    variable = pressure
    value = 1.0
  [../]
  [./conc_ic]
    type = ConstantIC
    variable = conc
    value = 1.0
  [../]
[]


[Kernels]
  [./c_dot]
    type = TimeDerivative
    variable = conc
  [../]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    variable = conc
    pressure_var = pressure
  [../]
  [./rho_dot]
    type = TimeDerivative
    variable = pressure
  [../]
  [./flux_to_porespace]
    type = DesorptionToPorespace
    variable = pressure
    conc_var = conc
  [../]
[]

[Postprocessors]
  [./mass_rho]
    type = ElementIntegralVariablePostprocessor
    block = 0
    variable = pressure
    execute_on = 'initial timestep_end'
  [../]
  [./mass_conc]
    type = ElementIntegralVariablePostprocessor
    block = 0
    variable = conc
    execute_on = 'initial timestep_end'
  [../]
  [./mass_tot]
    type = FunctionValuePostprocessor
    function = mass_fcn
    execute_on = 'initial timestep_end'
  [../]
  [./p0]
    type = PointValue
    variable = pressure
    point = '0 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./c0]
    type = PointValue
    variable = conc
    point = '0 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Functions]
  [./mass_fcn]
    type = ParsedFunction
    value = a+b
    vars = 'a b'
    vals = 'mass_rho mass_conc'
  [../]
[]

[Materials]
  [./lang_stuff]
    type = MollifiedLangmuirMaterial
    block = 0
    one_over_desorption_time_const = 0.90909091
    one_over_adsorption_time_const = 0.90909091
    langmuir_density = 0.88
    langmuir_pressure = 1.23
    pressure_var = pressure
    conc_var = conc
    mollifier = 1E-4
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.01
  end_time = 2
[]
[Outputs]
  file_base = mollified_langmuir_desorption
  interval = 10
  exodus = true
  csv = 10
[] # Outputs

modules/xfem/test/tests/solid_mechanics_basic/penny_crack.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  file = quarter_sym.e
[]

[UserObjects]
  [./circle_cut_uo]
    type = CircleCutUserObject
    cut_data = '-0.5 -0.5 0
                0.0 -0.5 0
                -0.5 0 0'
  [../]
[]

[AuxVariables]
  [./SED]
   order = CONSTANT
    family = MONOMIAL
  [../]
[]

[DomainIntegral]
  integrals = 'Jintegral'
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  crack_front_points = '-0.5 0.0 0.0
                        -0.25 -0.07 0
                        -0.15 -0.15 0
                        -0.07 -0.25 0
                         0 -0.5 0'
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0 1 0'
  crack_direction_vector_end_2 = '1 0 0'
  crack_direction_method = CurvedCrackFront
  intersecting_boundary = '3 4' #It would be ideal to use this, but can't use with XFEM yet
  radius_inner = '0.3'
  radius_outer = '0.6'
  poissons_ratio = 0.3
  youngs_modulus = 207000
  block = 1
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
    block = 1
  [../]
[]

[Functions]
  [./top_trac_z]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_z]
    type = FunctionNeumannBC
    boundary = 2
    variable = disp_z
    function = top_trac_z
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = 1
    variable = disp_z
    value = 0.0
  [../]
  [./sym_y]
    type = DirichletBC
    boundary = 3
    variable = disp_y
    value = 0.0
  [../]
  [./sym_x]
    type = DirichletBC
    boundary = 4
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = penny_crack_out
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/chemistry/except22.i

# Exception test
# Zero fluid phases
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./dummy]
  [../]
[]

[AuxVariables]
  [./a]
    initial_condition = 0.5
  [../]
  [./ini_mineral_conc]
    initial_condition = 0.2
  [../]
  [./mineral]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./porosity]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./mineral]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = mineral
  [../]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./dummy]
    type = Diffusion
    variable = dummy
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = dummy
    number_fluid_phases = 0
    number_fluid_components = 2
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
    temperature = 1
  [../]
  [./predis_qp]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = a
    num_reactions = 1
    equilibrium_constants = 0.5
    primary_activity_coefficients = 2
    reactions = 1
    specific_reactive_surface_area = 0.5
    kinetic_rate_constant = 0.6065306597126334
    activation_energy = 3
    molar_volume = 2
    gas_constant = 6
    reference_temperature = 0.5
  [../]
  [./mineral_conc_qp]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_mineral_conc
  [../]
  [./porosity]
    type = PorousFlowPorosity
    chemical = true
    porosity_zero = 0.6
    reference_chemistry = ini_mineral_conc
  [../]
[]


[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1E-10
  dt = 0.1
  end_time = 0.4
[]

[Postprocessors]
  [./porosity]
    type = PointValue
    point = '0 0 0'
    variable = porosity
  [../]
  [./c]
    type = PointValue
    point = '0 0 0'
    variable = mineral
  [../]
[]
[Outputs]
  csv = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/plane_stress/weak_plane_stress_finite_tension_pull.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  out_of_plane_strain = strain_zz
[]

[Problem]
  extra_tag_vectors = 'ref'
[]

[Mesh]
  [gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 1
    ny = 1
  []
[]

[Variables]
  [disp_x]
  []
  [disp_y]
  []
  [strain_zz]
  []
[]

[AuxVariables]
  [react_x]
  []
[]

[Postprocessors]
  [react_x]
    type = NodalSum
    variable = 'react_x'
    boundary = 'right'
  []
  [stress_xx]
    type = ElementalVariableValue
    variable = 'stress_xx'
    elementid = 0
  []
  [strain_zz]
    type = ElementalVariableValue
    variable = 'strain_zz'
    elementid = 0
  []
[]

[Modules/TensorMechanics/Master]
  [plane_stress]
    strain = FINITE
    planar_formulation = WEAK_PLANE_STRESS
    extra_vector_tags = 'ref'
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy'
  []
[]

[AuxKernels]
  [react_x]
    type = TagVectorAux
    vector_tag = 'ref'
    v = 'disp_x'
    variable = 'react_x'
  []
[]

[BCs]
  [leftx]
    type = DirichletBC
    boundary = left
    variable = disp_x
    value = 0.0
  []
  [bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  []
  [rightx]
    type = FunctionDirichletBC
    boundary = right
    variable = disp_x
    function = 't'
  []
[]

[Materials]
  [elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  []
  [stress]
    type = ComputeFiniteStrainElasticStress
  []
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

  # time control
  start_time = 0.0
  dt = 0.01
  dtmin = 0.01
  end_time = 0.2
[]

[Outputs]
  csv = true
[]

test/tests/functions/image_function/threshold_adapt_parallel.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  parallel_type = distributed
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file_base = stack/test
    file_suffix = png
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    threshold = 2.7e4
    upper_value = 1
    lower_value = -1
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Adaptivity]
  max_h_level = 5
  initial_steps = 5
  initial_marker = marker
  [./Indicators]
    [./indicator]
      type = GradientJumpIndicator
      variable = u
    [../]
  [../]
  [./Markers]
    [./marker]
      type = ErrorFractionMarker
      indicator = indicator
      refine = 0.9
    [../]
  [../]
[]

[Outputs]
[]

test/tests/postprocessors/displaced_mesh/side.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  displacements = 'ux uy'
[]

[AuxVariables]
  [./ux]
    [./InitialCondition]
      type = FunctionIC
      function = x
    [../]
  [../]
  [./uy]
    [./InitialCondition]
      type = FunctionIC
      function = y
    [../]
  [../]
  [./c]
    initial_condition = 1
  [../]
[]

[Variables]
  [./a]
  [../]
[]
[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
[]

[Postprocessors]
  [./without]
    type = SideIntegralVariablePostprocessor
    variable = c
    execute_on = initial
    boundary = left
  [../]
  [./with]
    type = SideIntegralVariablePostprocessor
    variable = c
    use_displaced_mesh = true
    execute_on = initial
    boundary = left
  [../]
[]

[Problem]
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  [./out]
    type = Exodus
  [../]
[]

test/tests/multiapps/catch_up/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1 # This will be constrained by the master solve

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/csv/csv_no_time.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux0]
    order = SECOND
    family = SCALAR
  [../]
  [./aux1]
    family = SCALAR
    initial_condition = 5
  [../]
  [./aux2]
    family = SCALAR
    initial_condition = 10
  [../]
  [./aux_sum]
    family = SCALAR
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxScalarKernels]
  [./sum_nodal_aux]
    type = SumNodalValuesAux
    variable = aux_sum
    sum_var = u
    nodes = '1 2 3 4 5'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./mid_point]
    type = PointValue
    variable = u
    point = '0.5 0.5 0'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  verbose = true
[]

[Outputs]
  [./out]
    type = CSV
    time_column = false
  [../]
[]

test/tests/kernels/ode/coupled_ode_td.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 1
[]


[Variables]
  [./f]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
  [./f_times_mult]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
[]

[ScalarKernels]
  [./dT]
    type = CoupledODETimeDerivative
    variable = f
    v = f_times_mult
  [../]

  [./src]
    type = ParsedODEKernel
    variable = f
    function = '-1'
  [../]

  [./f_times_mult_1]
    type = ParsedODEKernel
    variable = f_times_mult
    function = 'f_times_mult'
  [../]

  [./f_times_mult_2]
    type = ParsedODEKernel
    variable = f_times_mult
    function = '-f * g'
    args = 'f g'
  [../]
[]

[AuxVariables]
  [./g]
    family = SCALAR
    order = FIRST
  [../]
[]

[Functions]
  [./function_g]
    type = ParsedFunction
    value = '(1 + t)'
  [../]
[]

[AuxScalarKernels]
  [./set_g]
    type = FunctionScalarAux
    function = function_g
    variable = g
    execute_on = 'linear initial'
  [../]
[]

[Postprocessors]
  [./f]
    type = ScalarVariable
    variable = f
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 3
  nl_abs_tol = 1e-9
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/jacobian/line_sink04.i

# PorousFlowPolyLineSink with 2-phase, 3-components, with enthalpy, internal_energy, and thermal_conductivity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 2
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph0_sp1]
  [../]
  [./massfrac_ph1_sp0]
  [../]
  [./massfrac_ph1_sp1]
  [../]
  [./temp]
  [../]
[]


[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp ppwater ppgas massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
  [./dummy_outflow]
    type = PorousFlowSumQuantity
  [../]
[]

[ICs]
  [./temp]
    type = RandomIC
    variable = temp
    min = 1
    max = 2
  [../]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp1]
    type = RandomIC
    variable = massfrac_ph0_sp1
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp1]
    type = RandomIC
    variable = massfrac_ph1_sp1
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./dummy_temp]
    type = TimeDerivative
    variable = temp
  [../]
  [./dummy_ppwater]
    type = TimeDerivative
    variable = ppwater
  [../]
  [./dummy_ppgas]
    type = TimeDerivative
    variable = ppgas
  [../]
  [./dummy_m00]
    type = TimeDerivative
    variable = massfrac_ph0_sp0
  [../]
  [./dummy_m01]
    type = TimeDerivative
    variable = massfrac_ph0_sp1
  [../]
  [./dummy_m10]
    type = TimeDerivative
    variable = massfrac_ph1_sp0
  [../]
  [./dummy_m11]
    type = TimeDerivative
    variable = massfrac_ph1_sp1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
      cv = 1.1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1.4
      cv = 1.8
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '0.1 0.2 0.3 0.2 0 0.1 0.3 0.1 0.1'
  [../]
[]

[DiracKernels]
  [./dirac0]
    type = PorousFlowPolyLineSink
    fluid_phase = 0
    variable = ppwater
    point_file = one_point.bh
    line_length = 1
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-0.9 1.5'
    fluxes = '-1.1 2.2'
  [../]
  [./dirac1]
    type = PorousFlowPolyLineSink
    fluid_phase = 1
    variable = ppgas
    line_length = 1
    use_relative_permeability = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '1.1 -2.2'
  [../]
  [./dirac2]
    type = PorousFlowPolyLineSink
    fluid_phase = 0
    variable = massfrac_ph0_sp0
    line_length = 1.3
    use_mobility = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '1.1 -0.2'
  [../]
  [./dirac3]
    type = PorousFlowPolyLineSink
    fluid_phase = 0
    variable = massfrac_ph0_sp1
    line_length = 1.3
    use_enthalpy = true
    mass_fraction_component = 0
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '1.1 -0.2'
  [../]
  [./dirac4]
    type = PorousFlowPolyLineSink
    fluid_phase = 1
    variable = massfrac_ph1_sp0
    function_of = temperature
    line_length = 0.9
    mass_fraction_component = 1
    use_internal_energy = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '1.1 -0.2'
  [../]
  [./dirac5]
    type = PorousFlowPolyLineSink
    fluid_phase = 1
    variable = temp
    line_length = 0.9
    mass_fraction_component = 2
    use_internal_energy = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '1.1 -0.2'
  [../]
  [./dirac6]
    type = PorousFlowPolyLineSink
    fluid_phase = 1
    variable = massfrac_ph0_sp0
    use_mobility = true
    function_of = temperature
    mass_fraction_component = 1
    use_relative_permeability = true
    use_internal_energy = true
    point_file = ten_points.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '0 -0.2'
  [../]
[]


[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  file_base = line_sink04
[]

test/tests/time_integrators/aee/aee.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  nx = 10

  xmin = 0.0
  xmax = 1.0

[]

#still need BC for Energy, IC's for both.
[Variables]
  active = 'Time'

  [./Time]
    order =  FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[Functions]
  active = 'func'

  [./func]
    type = ParsedFunction
    value = 2.0*t
  [../]
[]

[Kernels]
  active = 't_time func_time'

  [./t_time]
    type = TimeDerivative
    variable = Time
  [../]

  [./func_time]
    type = BodyForce
    variable = Time
    function = func
  [../]
[]

[BCs]
  active = 'Top_Temperature'

  [./Top_Temperature]
    type = NeumannBC
    variable = Time
    boundary = 'left right'
  [../]

[]

[Executioner]
  type = Transient
  scheme = 'BDF2'
  #scheme = 'crank-nicolson'
  start_time = 0
  num_steps = 4
  nl_abs_tol = 1e-15
  petsc_options = '-snes_converged_reason'
  abort_on_solve_fail = true
 [./TimeStepper]
    type = AB2PredictorCorrector
    dt = .01
    e_max = 10
    e_tol = 1
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/explicit-euler/ee-1d-quadratic.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -1
  xmax = 1
  nx = 20
  elem_type = EDGE3
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = x*x-2*t
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*x*x
  [../]
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
#    lumping = true
    implicit = true
  [../]

  [./diff]
    type = Diffusion
    variable = u
    implicit = false
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
    implicit = false
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1'
    function = exact_fn
    implicit = true
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'explicit-euler'
  solve_type = 'LINEAR'

  l_tol = 1e-12
  start_time = 0.0
  num_steps = 20
  dt = 0.00005
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/tensor_mechanics/test/tests/shell/static/pinched_cylinder_symm.i

# Test for displacement of pinched cylinder
# Ref: Figure 10 and Table 6 from Dvorkin and Bathe, Eng. Comput., Vol. 1, 1984.

# A cylinder of radius 1 m and length 2 m (along Z axis) with clamped ends
# (at z = 0 and 2 m) is pinched at mid-length by placing point loads of 10 N
# at (1, 0, 1) and (-1, 0, 1). Due to the symmetry of the problem, only 1/8th
# of the cylinder needs to be modeled.

# The normalized series solution for the displacement at the loading point is
# w = Wc E t / P = 164.24; where Wc is the displacement in m, E is the Young's
# modulus, t is the thickness and P is the point load.

# For this problem, E = 1e6 Pa, L = 2 m, R = 1 m, t = 0.01 m, P = 10 N and
# Poisson's ratio = 0.3. FEM results from different mesh discretizations are
# presented below. Only the 10x10 mesh is included as a test.

# Mesh of 1/8 cylinder |  FEM/analytical (Moose) | FEM/analytical (Dvorkin)
#                      |ratio of normalized disp.| ratio of normalized disp.
#----------------------|-------------------------|-------------------------
#     10 x 10          |          0.806          |        0.83
#     20 x 20          |          1.06           |        0.96
#     40 x 40          |          0.95           |         -
#     80 x 160         |          0.96           |         -

# The results from FEM analysis matches well with the series solution and with
# the solution presented by Dvorkin and Bathe (1984).

[Mesh]
  [./mesh]
    type = FileMeshGenerator
    file = pinched_cyl_10_10.msh
  [../]
  [./block_100]
    type = ParsedSubdomainMeshGenerator
    input = mesh
    combinatorial_geometry = 'x > -1.1 & x < 1.1 & y > -1.1 & y < 1.1 & z > -0.1 & z < 2.1'
    block_id = 100
  [../]
  [./nodeset_1]
    type = BoundingBoxNodeSetGenerator
    input = block_100
    top_right = '1.1 1.1 0'
    bottom_left = '-1.1 -1.1 0'
    new_boundary = 'CD' #CD
  [../]
  [./nodeset_2]
    type = BoundingBoxNodeSetGenerator
    input = nodeset_1
    top_right = '1.1 1.1 1.0'
    bottom_left = '-1.1 -1.1 1.0'
    new_boundary = 'AB' #AB
  [../]
  [./nodeset_3]
    type = BoundingBoxNodeSetGenerator
    input = nodeset_2
    top_right = '0.02 1.1 1.0'
    bottom_left = '-0.1 0.98 0.0'
    new_boundary = 'AD' #AD
  [../]
  [./nodeset_4]
    type = BoundingBoxNodeSetGenerator
    input = nodeset_3
    top_right = '1.1 0.02 1.0'
    bottom_left = '0.98 -0.1 0.0'
    new_boundary = 'BC' #BC
  [../]
[]


[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./simply_support_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'CD AD'
    value = 0.0
  [../]
  [./simply_support_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'CD BC'
    value = 0.0
  [../]
  [./simply_support_z]
    type = DirichletBC
    variable = disp_z
    boundary = 'CD AB'
    value = 0.0
  [../]
  [./simply_support_rot_x]
    type = DirichletBC
    variable = rot_x
    boundary = 'CD BC'
    value = 0.0
  [../]
  [./simply_support_rot_y]
    type = DirichletBC
    variable = rot_y
    boundary = 'CD AD'
    value = 0.0
  [../]
[]

[DiracKernels]
  [./point1]
    type = ConstantPointSource
    variable = disp_x
    point = '1 0 1'
    value = -2.5 # P = 10
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dt = 1.0
  dtmin = 1.0
  end_time = 1.0
[]

[Kernels]
  [./solid_disp_x]
    type = ADStressDivergenceShell
    block = '100'
    component = 0
    variable = disp_x
    through_thickness_order = SECOND
  [../]
  [./solid_disp_y]
    type = ADStressDivergenceShell
    block = '100'
    component = 1
    variable = disp_y
    through_thickness_order = SECOND
  [../]
  [./solid_disp_z]
    type = ADStressDivergenceShell
    block = '100'
    component = 2
    variable = disp_z
    through_thickness_order = SECOND
  [../]
  [./solid_rot_x]
    type = ADStressDivergenceShell
    block = '100'
    component = 3
    variable = rot_x
    through_thickness_order = SECOND
  [../]
  [./solid_rot_y]
    type = ADStressDivergenceShell
    block = '100'
    component = 4
    variable = rot_y
    through_thickness_order = SECOND
  [../]
[]

[Materials]
  [./elasticity]
    type = ADComputeIsotropicElasticityTensorShell
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = '100'
    through_thickness_order = SECOND
  [../]
  [./strain]
    type = ADComputeIncrementalShellStrain
    block = '100'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y'
    thickness = 0.01
    through_thickness_order = SECOND
  [../]
  [./stress]
    type = ADComputeShellStress
    block = '100'
    through_thickness_order = SECOND
  [../]
[]

[Postprocessors]
  [./disp_z2]
    type = PointValue
    point = '1 0 1'
    variable = disp_x
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_added_mass_file.i

# Test for small strain euler beam vibration in y direction

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The beam is massless with a lumped masses at the ends of the beam.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 1e4
# Shear modulus (G) = 4e7
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 0.01
# Iy = 1e-4 = Iz
# Length (L)= 4 m
# mass = 0.01899772 at the cantilever end
# mass = 2.0 at the fixed end (just for file testing purposes does not alter result)

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 6.4e6
# Therefore, the beam behaves like a Euler-Bernoulli beam.

# The theoretical first frequency of this beam is:
# f1 = 1/(2 pi) * sqrt(3EI/(mL^3)) = 0.25

# This implies that the corresponding time period of this beam is 4s.

# The FEM solution for this beam with 10 element gives time periods of 4s with time step of 0.01s.
# A higher time step of 0.1 s is used in the test to reduce computational time.

# The time history from this analysis matches with that obtained from Abaqus.

# Values from the first few time steps are as follows:
# time   disp_y                vel_y                accel_y
# 0.0    0.0                   0.0                  0.0
# 0.1    0.0013076435060869    0.026152870121738    0.52305740243477
# 0.2    0.0051984378734383    0.051663017225289   -0.01285446036375
# 0.3    0.010269120909367     0.049750643493289   -0.02539301427625
# 0.4    0.015087433925158     0.046615616822532   -0.037307519138892
# 0.5    0.019534963888307     0.042334982440433   -0.048305168503101

[Mesh]
  type = GeneratedMesh
  xmin = 0.0
  xmax = 4.0
  nx = 10
  dim = 1
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
  [./x_inertial]
    type = NodalTranslationalInertia
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    boundary = 'left right'
    beta = 0.25
    gamma = 0.5
  #  nodal_mass_file = nodal_mass.csv # commented out for testing error message
  [../]
  [./y_inertial]
    type = NodalTranslationalInertia
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    boundary = 'left right'
    beta = 0.25
    gamma = 0.5
    nodal_mass_file = nodal_mass.csv
  [../]
  [./z_inertial]
    type = NodalTranslationalInertia
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    boundary = 'left right'
    beta = 0.25
    gamma = 0.5
    nodal_mass_file = nodal_mass.csv
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 10.0'
    y = '0.0 1e-2  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  petsc_options_iname = '-ksp_type -pc_type'
  petsc_options_value = 'preonly   lu'

  dt = 0.1
  end_time = 5.0
  timestep_tolerance = 1e-6
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e4
    poissons_ratio = -0.999875
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.01
    Ay = 0.0
    Az = 0.0
    Iy = 1.0e-4
    Iz = 1.0e-4
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  file_base = dyn_euler_small_added_mass_out
  exodus = true
  csv = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/static_deformations/layered_cosserat_02.i

# apply shears and Cosserat rotations and observe the stresses and moment-stresses
# with
# young = 0.7
# poisson = 0.2
# layer_thickness = 0.1
# joint_normal_stiffness = 0.25
# joint_shear_stiffness = 0.2
# then
# a0000 = 0.730681
# a0011 = 0.18267
# a2222 = 0.0244221
# a0022 = 0.006055
# a0101 = 0.291667
# a66 = 0.018717
# a77 = 0.155192
# b0110 = 0.000534
# b0101 = 0.000107
# and with
# u_x = y + 2*z
# u_y = x -1.5*z
# u_z = 1.1*x - 2.2*y
# wc_x = 0.5
# wc_y = 0.8
# then
# strain_xx = 0
# strain_xy = 1
# strain_xz = 2 - 0.8 = 1.2
# strain_yx = 1
# strain_yy = 0
# strain_yz = -1.5 + 0.5 = -1
# strain_zx = 1.1 + 0.8 = 1.9
# strain_zy = -2.2 - 0.5 = -2.7
# strain_zz = 0
# so that
# stress_xy = a0101*(1+1) = 0.583333
# stress_xz = a66*1.2 + a66*1.9 = 0.058021
# stress_yx = a0101*(1+1) = 0.583333
# stress_yz = a66*(-1) + a66*(-2.7) = -0.06925
# old stress_zx = a77*1.2 + a66*1.9 = 0.221793
# old stress_zy = a77*(-1) + a66*(-2.7) = -0.205728
# stress_zx = a66*1.2 + a77*1.9 = 0.317325
# stress_zy = a66*(-1) + a77*(-2.7) = -0.437735
# and all others zero
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  ymax = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  # zmin is called back
  # zmax is called front
  # ymin is called bottom
  # ymax is called top
  # xmin is called left
  # xmax is called right
  [./strain_xx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'left right'
    function = 'y+2*z'
  [../]
  [./strain_yy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'bottom top'
    function = 'x-1.5*z'
  [../]
  [./strain_zz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'back front'
    function = '1.1*x-2.2*y'
  [../]
  [./wc_x]
    type = FunctionDirichletBC
    variable = wc_x
    boundary = 'left right'
    function = 0.5
  [../]
  [./wc_y]
    type = FunctionDirichletBC
    variable = wc_y
    boundary = 'left right'
    function = 0.8
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yx]
    type = PointValue
    point = '0 0 0'
    variable = stress_yx
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zx]
    type = PointValue
    point = '0 0 0'
    variable = stress_zx
  [../]
  [./s_zy]
    type = PointValue
    point = '0 0 0'
    variable = stress_zy
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./c_s_xx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xx
  [../]
  [./c_s_xy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xy
  [../]
  [./c_s_xz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xz
  [../]
  [./c_s_yx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yx
  [../]
  [./c_s_yy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yy
  [../]
  [./c_s_yz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yz
  [../]
  [./c_s_zx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zx
  [../]
  [./c_s_zy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zy
  [../]
  [./c_s_zz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zz
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 0.7
    poisson = 0.2
    layer_thickness = 0.1
    joint_normal_stiffness = 0.25
    joint_shear_stiffness = 0.2
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol'
    petsc_options_value = 'gmres asm lu 1E-10 1E-14 10 1E-15 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = layered_cosserat_02
  csv = true
[]

test/tests/postprocessors/num_adaptivity_cycles/num_adaptivity_cycles_toggle_adaptivity_wait.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 1

  solve_type = 'PJFNK'

[]

[Adaptivity]
  cycles_per_step = 1
  marker = box
  max_h_level = 2
  initial_steps = 4
  initial_marker = initial_box
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = dont_mark
      type = BoxMarker
    [../]
    [./initial_box]
      type = BoxMarker
      bottom_left = '0.8 0.1 0'
      top_right = '0.9 0.2 0'
      inside = refine
      outside = dont_mark
    [../]
  [../]
[]

[UserObjects]
  [./toggle_adaptivity]
    type = ToggleMeshAdaptivity
    mesh_adaptivity = 'off'
    apply_after_timestep = 1
  [../]
[]

[Postprocessors]
  [./adaptivity_cycles]
    type = NumAdaptivityCycles
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  csv = true
[]

test/tests/multiapps/picard_failure/picard_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_abs_tol = 1e-14
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  active = 'sub' # will be modified by CLI overrides
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = picard_sub.i
  [../]
  [./sub_no_fail]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = picard_sub_no_fail.i
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

modules/porous_flow/test/tests/jacobian/pls01.i

# PorousFlowPiecewiseLinearSink with 1-phase, 1-component
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = RandomIC
    variable = pp
    max = 0
    min = -1
  [../]
[]

[Kernels]
  [./dummy]
    type = TimeDerivative
    variable = pp
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
      viscosity = 1.1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.1 0 0 0 2.2 0 0 0 3.3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[BCs]
  [./flux]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'left'
    pt_vals = '-1 -0.5 0'
    multipliers = '1 2 4'
    variable = pp
    fluid_phase = 0
    use_relperm = true
    use_mobility = true
    flux_function = 'x*y'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 2
[]

[Outputs]
  file_base = pls01
[]

modules/porous_flow/test/tests/jacobian/denergy05.i

# 2phase, 1 component, with solid displacements, time derivative of energy-density, THM porosity wth _ensure_positive = true, and compressive strains
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pgas]
  [../]
  [./pwater]
  [../]
  [./temp]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.0
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.0
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.0
  [../]
  [./pgas]
    type = RandomIC
    variable = pgas
    max = 0.01
    min = 0.0
  [../]
  [./pwater]
    type = RandomIC
    variable = pwater
    max = 0.0
    min = -0.01
  [../]
  [./temp]
    type = RandomIC
    variable = temp
    max = 1.0
    min = 0.0
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./dummy_pgas]
    type = Diffusion
    variable = pgas
  [../]
  [./dummy_pwater]
    type = Diffusion
    variable = pwater
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas temp pwater disp_x disp_y disp_z'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      cv = 1.3
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      cv = 0.7
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    thermal = true
    porosity_zero = 0.7
    thermal_expansion_coeff = 0.7
    biot_coefficient = 0.9
    solid_bulk = 10
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.1
    density = 0.5
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = pgas
    capillary_pressure = pc
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/multiapps/picard/function_dt_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 10
[]

[Functions]
  [./u_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]

  [./dts]
    type = PiecewiseLinear
    x = '0.1  10'
    y = '0.1  10'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./fn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = u_fn
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10
  start_time = 0
  num_steps = 3
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/conserved_noise/normal.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 10.0
  ymin = 0.0
  ymax = 10.0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.9
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Preconditioning]
  active = 'SMP'
  [./SMP]
   type = SMP
   off_diag_row = 'w c'
   off_diag_column = 'c w'
  [../]
[]

[Kernels]
  [./cres]
    type = SplitCHMath
    variable = c
    kappa_name = kappa_c
    w = w
  [../]

  [./wres]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]

  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]

  [./conserved_langevin]
    type = ConservedLangevinNoise
    amplitude = 0.5
    variable = w
    noise = normal_noise
  []
[]

[BCs]
  [./Periodic]
    [./all]
      variable = 'c w'
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 2.0'
  [../]
[]

[UserObjects]
  [./normal_noise]
    type = ConservedNormalNoise
  [../]
[]

[Postprocessors]
  [./total_c]
    type = ElementIntegralVariablePostprocessor
    execute_on = 'initial timestep_end'
    variable = c
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  l_max_its = 30
  l_tol = 1.0e-3

  nl_max_its = 30
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  dt = 10.0
  num_steps = 4
[]

[Outputs]
  file_base = normal
  exodus = true
  [./csv]
    type = CSV
    delimiter = ' '
  [../]
[]

modules/tensor_mechanics/test/tests/generalized_plane_strain/generalized_plane_strain_increment.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  scalar_out_of_plane_strain = scalar_strain_zz
  block = 1
[]

[Mesh]
  file = square.e
[]

[Variables]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy strain_zz'
    planar_formulation = GENERALIZED_PLANE_STRAIN
    eigenstrain_names = eigenstrain
    scalar_out_of_plane_strain = scalar_strain_zz
    temperature = temp
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  # controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

  # controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

  # time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/grain_growth/hex.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  nz = 0
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1000
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 4
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./hex_ic]
    type = PolycrystalHex
    coloring_algorithm = bt
    x_offset = .5
    grain_num = 4
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = hex_ic
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Preconditioning]
  active = ''
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 2
  dt = 80.0
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_3/ring3_template1_sm.i

[Mesh]
  file = ring3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cto26.i

# CappedDruckerPrager

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 2
    internal_limit = 100
  [../]
  [./cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 5
    value_residual = 3
    internal_limit = 100
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningCubic
    value_0 = 10
    value_residual = 1
    internal_limit = 100
  [../]
  [./phi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.8
    value_residual = 0.4
    internal_limit = 50
  [../]
  [./psi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.4
    value_residual = 0
    internal_limit = 10
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    yield_function_tolerance = 1E-11     # irrelevant here
    internal_constraint_tolerance = 1E-9 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    lambda = 0.1
    shear_modulus = 1.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6 5 4  5 7 2  4 2 2'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = dp
  [../]
  [./dp]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-11
    tip_smoother = 1
    smoothing_tol = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/richards/test/tests/dirac/st01.i

# fully-saturated
# production
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./stream_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./stream]
    type = RichardsPolyLineSink
    pressures = '0.2E7 0.8E7'
    fluxes = '1 2'
    point_file = st01.stream
    SumQuantityUO = stream_total_outflow_mass
    variable = pressure
  [../]
[]


[Postprocessors]
  [./stream_report]
    type = RichardsPlotQuantity
    uo = stream_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]


[Functions]
 active = 'mass_bal_fcn initial_pressure'

  [./initial_pressure]
    type = ParsedFunction
    value = 1E7
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 stream_report'
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-12 0 0  0 1E-12 0  0 0 1E-12'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 2.5
  dt = 0.1
  solve_type = NEWTON

[]

[Outputs]
  file_base = st01
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/tensor_mechanics/test/tests/drucker_prager/random_hyperbolic.i

# drucker-prager hyperbolic.
# apply many random large deformations, checking that the algorithm returns correctly to
# the yield surface each time.


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 100
  ny = 125
  nz = 1
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./yield_fcn_at_zero]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console'
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'yield_fcn_at_zero'
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E3
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    smoother = 0.1E3
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-6
    use_custom_returnMap = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./dp]
    type = ComputeMultiPlasticityStress
    block = 0
    max_NR_iterations = 1000
    ep_plastic_tolerance = 1E-6
    min_stepsize = 1E-3
    plastic_models = dp
    debug_fspb = crash
    deactivation_scheme = safe
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random_hyperbolic
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/time_integrators/newmark-beta/newmark_beta_default_parameters.i

###########################################################
# This is a simple test with a time-dependent problem
# demonstrating the use of the TimeIntegrator system.
#
# Testing that the first and second time derivatives
# are calculated correctly using the Newmark-Beta method
#
# @Requirement F1.30
###########################################################

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 1
  ny = 1
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2    0.3  0.4    0.5  0.6'
    y = '0.0 0.0 0.0025 0.01 0.0175 0.02 0.02'
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = 'left'
    function = forcing_fn
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = 'right'
    function = forcing_fn
  [../]
[]

[Executioner]
  type = Transient

  # Time integrator scheme
  scheme = "newmark-beta"

  start_time = 0.0
  num_steps = 6
  dt = 0.1
[]

[Postprocessors]
  [./udot]
    type = ElementAverageTimeDerivative
    variable = u
  [../]
  [./udotdot]
    type = ElementAverageSecondTimeDerivative
    variable = u
  [../]
  [./u]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Outputs]
  csv = true
[]

modules/richards/test/tests/broadbridge_white/bw01.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 200
  ny = 1
  xmin = -10
  xmax = 10
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-5 1E-2 1E-2 1E-1'
    x = '0 1E-5 1 10'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 10
    bulk_mod = 2E9
  [../]
  [./SeffBW]
    type = RichardsSeff1BWsmall
    Sn = 0.0
    Ss = 1.0
    C = 1.5
    las = 2
  [../]
  [./RelPermBW]
    type = RichardsRelPermBW
    Sn = 0.0
    Ss = 1.0
    Kn = 0
    Ks = 1
    C = 1.5
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E2
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -9E2
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffBW
    pressure_vars = pressure
  [../]
[]


[BCs]
  active = 'recharge'
  [./recharge]
    type = RichardsPiecewiseLinearSink
    variable = pressure
    boundary = 'right'
    pressures = '-1E10 1E10'
    bare_fluxes = '-1.25 -1.25' # corresponds to Rstar being 0.5 because i have to multiply by density*porosity
    use_mobility = false
    use_relperm = false
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.25
    mat_permeability = '1 0 0  0 1 0  0 0 1'
    density_UO = DensityConstBulk
    relperm_UO = RelPermBW
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffBW
    viscosity = 4
    gravity = '-0.1 0 0'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 2

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]


[Outputs]
  file_base = bw01
  interval = 10000
  execute_on = 'timestep_end final'
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_3/plane3_mu_0_2_pen_sm.i

[Mesh]
  file = plane3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = plane3_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = plane3_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_2/plane2_mu_0_2_pen.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane2_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = plane2_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = plane2_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/porous_flow/test/tests/flux_limited_TVD_pflow/pffltvd_1D_adaptivity.i

# Using flux-limited TVD advection ala Kuzmin and Turek, mploying PorousFlow Kernels and UserObjects, with superbee flux-limiter
# 1D version with adaptivity
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[Adaptivity]
  initial_steps = 1
  initial_marker = tracer_marker
  marker = tracer_marker
  max_h_level = 1
  [./Markers]
    [./tracer_marker]
      type = ValueRangeMarker
      variable = tracer
      lower_bound = 0.02
      upper_bound = 0.98
    [../]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '1 - x'
  [../]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = tracer
  [../]
  [./flux0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = advective_flux_calculator_0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = porepressure
  [../]
  [./flux1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = porepressure
    advective_flux_calculator = advective_flux_calculator_1
  [../]
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1
    boundary = left
  [../]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_component_1]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 1
    use_mobility = true
    flux_function = 1E3
  [../]
  [./remove_component_0]
    type = PorousFlowPiecewiseLinearSink
    variable = tracer
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 0
    use_mobility = true
    flux_function = 1E3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      thermal_expansion = 0
      viscosity = 1.0
      density0 = 1000.0
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure tracer'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
  [./advective_flux_calculator_0]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 0
  [../]
  [./advective_flux_calculator_1]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = tracer
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = the_simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-2 0 0   0 1E-2 0   0 0 1E-2'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 11
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  nl_abs_tol = 1E-8
  timestep_tolerance = 1E-3
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_added_mass.i

# Test for small strain euler beam vibration in y direction

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The beam is massless with a lumped mass at the end of the beam
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 1e4
# Shear modulus (G) = 4e7
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 0.01
# Iy = 1e-4 = Iz
# Length (L)= 4 m
# mass (m) = 0.01899772

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 6.4e6
# Therefore, the beam behaves like a Euler-Bernoulli beam.

# The theoretical first frequency of this beam is:
# f1 = 1/(2 pi) * sqrt(3EI/(mL^3)) = 0.25

# This implies that the corresponding time period of this beam is 4s.

# The FEM solution for this beam with 10 element gives time periods of 4s with time step of 0.01s.
# A higher time step of 0.1 s is used in the test to reduce computational time.

# The time history from this analysis matches with that obtained from Abaqus.

# Values from the first few time steps are as follows:
# time   disp_y                vel_y                accel_y
# 0.0    0.0                   0.0                  0.0
# 0.1    0.0013076435060869    0.026152870121738    0.52305740243477
# 0.2    0.0051984378734383    0.051663017225289   -0.01285446036375
# 0.3    0.010269120909367     0.049750643493289   -0.02539301427625
# 0.4    0.015087433925158     0.046615616822532   -0.037307519138892
# 0.5    0.019534963888307     0.042334982440433   -0.048305168503101

[Mesh]
  type = GeneratedMesh
  xmin = 0.0
  xmax = 4.0
  nx = 10
  dim = 1
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
  [./x_inertial]
    type = NodalTranslationalInertia
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
  [../]
  [./y_inertial]
    type = NodalTranslationalInertia
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
  [../]
  [./z_inertial]
    type = NodalTranslationalInertia
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 10.0'
    y = '0.0 1e-2  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  petsc_options_iname = '-ksp_type -pc_type'
  petsc_options_value = 'preonly   lu'

  dt = 0.1
  end_time = 5.0
  timestep_tolerance = 1e-6
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e4
    poissons_ratio = -0.999875
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.01
    Ay = 0.0
    Az = 0.0
    Iy = 1.0e-4
    Iz = 1.0e-4
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
[]

test/tests/restart/restart_diffusion/restart_diffusion_from_end_part1.i

[Mesh]
  file = square.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  active = 'left right'

  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 6
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_notperiodic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 85
  ny = 85
  nz = 0
  xmax = 250
  ymax = 250
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 5
  grain_num = 5
  var_name_base = gr
  numbub = 20
  bubspac = 22
  radius = 8
  int_width = 10
  invalue = 1
  outvalue = 0.1
[]

[Variables]
  [./c]
  [../]
  [./w]
    scaling = 1.0e4
  [../]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalVoronoiVoidIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
  [./c_IC]
    variable = c
    type = PolycrystalVoronoiVoidIC
    structure_type = voids
    polycrystal_ic_uo = voronoi
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 12444
    int_width = 0
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/poro_mechanics/undrained_oedometer.i

# An undrained oedometer test on a saturated poroelastic sample.
#
# The sample is a single unit element, with roller BCs on the sides
# and bottom.  A constant displacement is applied to the top: disp_z = -0.01*t.
# There is no fluid flow.
#
# Under these conditions
# porepressure = -(Biot coefficient)*(Biot modulus)*disp_z/L
# stress_xx = (bulk - 2*shear/3)*disp_z/L (remember this is effective stress)
# stress_zz = (bulk + 4*shear/3)*disp_z/L (remember this is effective stress)
# where L is the height of the sample (L=1 in this test)
#
# Parameters:
# Biot coefficient = 0.3
# Porosity = 0.1
# Bulk modulus = 2
# Shear modulus = 1.5
# fluid bulk modulus = 1/0.3 = 3.333333
# 1/Biot modulus = (1 - 0.3)*(0.3 - 0.1)/2 + 0.1*0.3 = 0.1. BiotModulus = 10
#
# Desired output:
# zdisp = -0.01*t
# p0 = 0.03*t
# stress_xx = stress_yy = -0.01*t
# stress_zz = -0.04*t

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./basefixed]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  [../]
  [./top_velocity]
    type = FunctionDirichletBC
    variable = disp_z
    function = -0.01*t
    boundary = front
  [../]
[]


[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PoroMechanicsCoupling
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PoroMechanicsCoupling
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PoroMechanicsCoupling
    variable = disp_z
    component = 2
  [../]
  [./poro_timederiv]
    type = PoroFullSatTimeDerivative
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]



[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./poro_material]
    type = PoroFullSatMaterial
    porosity0 = 0.1
    biot_coefficient = 0.3
    solid_bulk_compliance = 0.5
    fluid_bulk_compliance = 0.3
    constant_porosity = true
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]

[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = undrained_oedometer
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/normalized_penalty/normalized_penalty_kin.i

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = normalized_penalty.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Functions]
  [./left_x]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 0.02 0'
  [../]
[]

[AuxVariables]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx'
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  []
[]

[Contact]
  [./m3_s2]
    master = 3
    slave = 2
    penalty = 1e10
    normalize_penalty = true
    tangential_tolerance = 1e-3
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = left_x
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2 3 4'
    value = 0.0
  [../]

  [./right]
    type = DirichletBC
    variable = disp_x
    boundary = '3 4'
    value = 0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2 3 4 1000'
    youngs_modulus = 3e8
    poissons_ratio = 0.0
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2 3 4 1000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-12
  nl_abs_tol = 3e-8

  l_max_its = 100
  nl_max_its = 20
  dt = 0.5
  num_steps = 4
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/beam/static/euler_pipe_bend.i

# Test for small strain Euler beam bending in y direction

# Modeling a tube with an outer radius of 15 mm and inner radius of 13 mm
# The length of the tube is 1.0 m
# E = 2.068e11 Pa and G = 7.956e10 with nu = 0.3
# A load of 5 N is applied at the end of the beam in the y-dir

# The displacement at the end is given by
# y = - W * L^3 / 3 * E * I
# y = - 5 * 1.0^3 / 3 * 2.068e11 * 1.7329e-8 = 4.65e-4 m

# where I = pi/2 * (r_o^4 - r_i^4)
# I = pi /2 * (0.015^4 - 0.013^4) = 1.7329e-8

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 1.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = ConstantRate
    variable = disp_y
    boundary = right
    rate = 5.0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 2.068e11
    poissons_ratio = 0.3
    shear_coefficient = 1.0
    block = 0
    outputs = exodus
    output_properties = 'material_stiffness material_flexure'
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 1.759e-4
    Ay = 0.0
    Az = 0.0
    Iy = 1.7329e-8
    Iz = 1.7329e-8
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
    outputs = exodus
    output_properties = 'forces moments'
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '1.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '1.0 0.0 0.0'
    variable = disp_y
  [../]
  [./forces_y]
    type = PointValue
    point = '1.0 0.0 0.0'
    variable = forces_y
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

test/tests/transfers/multiapp_scalar_to_auxscalar_transfer/from_sub/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./b]
    family = SCALAR
    order = SIXTH
  [../]
[]

[ICs]
  [./ic]
    type = ScalarComponentIC
    variable = b
    values = '1.0 2.0 3.0 4.0 5.0 6.0'
  [../]
[]

[Kernels]
  [./diffusion]
    type = Diffusion
    variable = u
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient
[]

[Outputs]
  hide = 'u'
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/hcond02.i

# 2phase heat conduction
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pgas]
  [../]
  [./pwater]
  [../]
  [./temp]
  [../]
[]

[ICs]
  [./pgas]
    type = RandomIC
    variable = pgas
    max = 1.0
    min = 0.0
  [../]
  [./pwater]
    type = RandomIC
    variable = pwater
    max = 0.0
    min = -1.0
  [../]
  [./temp]
    type = RandomIC
    variable = temp
    max = 1.0
    min = 0.0
  [../]
[]


[Kernels]
  [./dummy_pgas]
    type = Diffusion
    variable = pgas
  [../]
  [./dummy_pwater]
    type = Diffusion
    variable = pwater
  [../]
  [./heat_conduction]
    type = PorousFlowHeatConduction
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas temp pwater'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '1.1 0.1 0.3 0.1 2.2 0 0.3 0 3.3'
    wet_thermal_conductivity = '2.1 0.1 0.3 0.1 1.2 0 0.3 0 1.1'
    exponent = 1.7
    aqueous_phase_number = 1
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = pgas
    capillary_pressure = pc
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/tensor_mechanics/test/tests/jacobian/cosserat04.i

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  active = 'cx_elastic cy_elastic cz_elastic x_couple y_couple z_couple x_moment y_moment z_moment'
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./z_couple]
    type = StressDivergenceTensors
    variable = wc_z
    displacements = 'wc_x wc_y wc_z'
    component = 2
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
  [./z_moment]
    type = MomentBalancing
    variable = wc_z
    component = 2
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeCosseratElasticityTensor
    B_ijkl = '1 2.2 2.333 1.988 1 2.1 2.2 2.3 2.4 1 2.2 2.333 1.988 1 2.1 2.2 2.3 2.4 2.2 2 1.6'
    fill_method_bending = 'symmetric21'
    E_ijkl = '1.07 1.2 1.333 0.988 1.123 1.1 1.25 1.3 1.4 1 1.2 1.333 0.9 1.11 1.16 1.28 1.35 1.45 1.03 1 0.6'
    fill_method = 'symmetric21'
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update22.i

# MC update version, with only MohrCoulomb, cohesion=10, friction angle = 60, psi = 5, smoothing_tol = 1
# Lame lambda = 0.5.  Lame mu = 1

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 0.5
    shear_modulus = 1.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6 5 4  5 7 2  4 2 2'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/chemical_reactions/test/tests/desorption/langmuir_jac2.i

# testing whether when we have a centre block containing 'conc' which is a CONSTANT MONOMIAL, we get the correct Jacobian
[Mesh]
  type = FileMesh
  file = three_eles.e
[]

[Variables]
  [./pressure]
  [../]
  [./conc]
    family = MONOMIAL
    order = CONSTANT
    block = centre_block
  [../]
[]

[ICs]
  [./p_ic]
    type = RandomIC
    variable = pressure
    min = -1
    max = 1
  [../]
  [./conc_ic]
    type = RandomIC
    variable = conc
    min = -1
    max = 1
    block = centre_block
  [../]
[]


[Kernels]
  [./p_dot] # this is just so a kernel is defined everywhere
    type = TimeDerivative
    variable = pressure
  [../]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    block = centre_block
    variable = conc
    pressure_var = pressure
  [../]
  [./flux_to_porespace]
    type = DesorptionToPorespace
    block = centre_block
    variable = pressure
    conc_var = conc
  [../]
[]

[Materials]
  [./nothing] # when any block contains a material, all blocks need to
    type = GenericConstantMaterial
    block = 'left_block centre_block right_block'
    prop_names = ''
    prop_values = ''
  [../]
  [./langmuir_params]
    type = MollifiedLangmuirMaterial
    block = centre_block
    one_over_desorption_time_const = 0.813E-10
    one_over_adsorption_time_const = 0.813E-10
    langmuir_density = 2.34
    langmuir_pressure = 1.5
    pressure_var = pressure
    conc_var = conc
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = langmuir_jac2
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_3/brick3_template2_sm.i

[Mesh]
  file = brick3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_x
  [../]
  [./disp_x33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_x
  [../]
  [./disp_y28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_y
  [../]
  [./disp_y33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-7
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x28 disp_y28 disp_x33 disp_y33 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    order = SECOND
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+7
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/porous_flow/test/tests/heterogeneous_materials/constant_poroperm2.i

# Assign porosity and permeability variables from constant AuxVariables to create
# a heterogeneous model

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
  xmin = 1
  xmax = 4
  ymin = 1
  ymax = 4
  zmin = 1
  zmax = 4
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 -10'
[]

[Variables]
  [./ppwater]
    initial_condition = 1e6
  [../]
[]

[AuxVariables]
  [./poro]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./poromat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxxmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxymat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxzmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyxmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyymat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyzmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzxmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzymat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzzmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./poromat]
    type = PorousFlowPropertyAux
    property = porosity
    variable = poromat
  [../]
  [./permxxmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permxxmat
    column = 0
    row = 0
  [../]
  [./permxymat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permxymat
    column = 1
    row = 0
  [../]
  [./permxzmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permxzmat
    column = 2
    row = 0
  [../]
  [./permyxmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permyxmat
    column = 0
    row = 1
  [../]
  [./permyymat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permyymat
    column = 1
    row = 1
  [../]
  [./permyzmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permyzmat
    column = 2
    row = 1
  [../]
  [./permzxmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permzxmat
    column = 0
    row = 2
  [../]
  [./permzymat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permzymat
    column = 1
    row = 2
  [../]
  [./permzzmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permzzmat
    column = 2
    row = 2
  [../]
[]

[ICs]
  [./poro]
    type = RandomIC
    seed = 0
    variable = poro
    max = 0.5
    min = 0.1
  [../]
  [./permxx]
    type = FunctionIC
    function = permxx
    variable = permxx
  [../]
  [./permxy]
    type = FunctionIC
    function = permxy
    variable = permxy
  [../]
  [./permxz]
    type = FunctionIC
    function = permxz
    variable = permxz
  [../]
  [./permyx]
    type = FunctionIC
    function = permyx
    variable = permyx
  [../]
  [./permyy]
    type = FunctionIC
    function = permyy
    variable = permyy
  [../]
  [./permyz]
    type = FunctionIC
    function = permyz
    variable = permyz
  [../]
  [./permzx]
    type = FunctionIC
    function = permzx
    variable = permzx
  [../]
  [./permzy]
    type = FunctionIC
    function = permzy
    variable = permzy
  [../]
  [./permzz]
    type = FunctionIC
    function = permzz
    variable = permzz
  [../]
[]

[Functions]
  [./permxx]
    type = ParsedFunction
    value = '(x*x)*1e-11'
  [../]
  [./permxy]
    type = ParsedFunction
    value = '(x*y)*1e-11'
  [../]
  [./permxz]
    type = ParsedFunction
    value = '(x*z)*1e-11'
  [../]
  [./permyx]
    type = ParsedFunction
    value = '(y*x)*1e-11'
  [../]
  [./permyy]
    type = ParsedFunction
    value = '(y*y)*1e-11'
  [../]
  [./permyz]
    type = ParsedFunction
    value = '(y*z)*1e-11'
  [../]
  [./permzx]
    type = ParsedFunction
    value = '(z*x)*1e-11'
  [../]
  [./permzy]
    type = ParsedFunction
    value = '(z*y)*1e-11'
  [../]
  [./permzz]
    type = ParsedFunction
    value = '(z*z)*1e-11'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    variable = ppwater
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      viscosity = 1e-3
      thermal_expansion = 0
      cv = 2
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = ppwater
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = poro
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConstFromVar
    perm_xx = permxx
    perm_xy = permxy
    perm_xz = permxz
    perm_yx = permyx
    perm_yy = permyy
    perm_yz = permyz
    perm_zx = permzx
    perm_zy = permzy
    perm_zz = permzz
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[Postprocessors]
  [./mass_ph0]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 100
  dt = 100
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  perf_graph = true
[]

modules/combined/test/tests/solid_mechanics/spherical_shell/2D-RZ_test.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces. Three versions of the test are
# provided, assuming 1D spherical geometry (1D-SPH), 2D axisymmetic geometry
# (2D-RZ), and 3D geometry (3D). The tests demonstrate that all three geometric
# approaches produce the same correct solution.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000, respectively. The resulting compressive tangential
# stress is largest at the inner wall and, from the above equation, has a value
# of -271429.
#
# RESULTS are below. Since stresses are average element values, values for the
# edge element and one-element-in are used to extrapolate the stress to the
# inner surface. The vesrion of the tests that are checked use the coarsest meshes.
#
#  Mesh    Radial elem   S(edge elem)  S(one elem in)  S(extrap to surf)
# 1D-SPH       12          -264842      -254419        -270053
# 2D-RZ        12          -265007      -254668        -270177
#  3D          12 (4x4)    -258922      -251099        -262834
#  3D          12 (6x6)    -262194      -252969        -266807
#
# 1D-SPH       48          -269679      -266390        -271323
# 2D-RZ        48          -269723      -266470        -271350
#  3D          48          -268617      -265717        -270067
#
# 1D-SPH      100          -270580      -268932        -271404
# 2D-RZ       100          -270587      -268946        -271408
#
# The numerical solution converges to the analytical solution as the mesh is
# refined.

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = 2D-RZ_mesh.e
[]

[Problem]
  coord_type = RZ
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    additional_generate_output = 'stress_zz'
  []
[]

[BCs]
# pin particle along symmetry planes
  [./no_disp_x]
    type = DirichletBC
    variable = disp_x
    boundary = xzero
    value = 0.0
  [../]

  [./no_disp_y]
    type = DirichletBC
    variable = disp_y
    boundary = yzero
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = outer
    component = 0
    factor = 200000
  [../]

 [./exterior_pressure_y]
    type = Pressure
    variable = disp_y
    boundary = outer
    component = 1
    factor = 200000
  [../]

  [./interior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = inner
    component = 0
    factor = 100000
  [../]

  [./interior_pressure_y]
    type = Pressure
    variable = disp_y
    boundary = inner
    component = 1
    factor = 100000
  [../]
[]

[Materials]
  [./fuel_disp]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e10
    poissons_ratio = 0.345
  [../]
  [./fuel_disp_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
[]

[Debug]
    show_var_residual_norms = true
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

   start_time = 0.0
   end_time = 1
   num_steps = 1000

  dtmax = 5e6
  dtmin = 1
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    optimal_iterations = 6
    iteration_window = 0
    linear_iteration_ratio = 100
  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

#  [./Quadrature]
#    order = THIRD
#  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/functions/piecewise_multilinear/fourDa.i

# PiecewiseMultilinear function test in 3D with function depending on time
#
# This test uses a function on the unit cube.
# For t<=3 the function is unity at (x,y,z)=(0,0,0) and zero elsewhere
# For t>=7 the function is unity at (x,y,z)=(1,1,1) and zero elsewhere

[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = 0
  xmax = 1
  nx = 2
  ymin = 0
  ymax = 1
  ny = 2
  zmin = 0
  zmax = 1
  nz = 2
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_kernel]
    type = TimeDerivative
    variable = dummy
  [../]
[]

[AuxVariables]
  [./f]
  [../]
[]

[AuxKernels]
  [./f_AuxK]
    type = FunctionAux
    function = fourDa
    variable = f
  [../]
[]

[Functions]
  [./fourDa]
    type = PiecewiseMultilinear
    data_file = fourDa.txt
  [../]
[]


[Executioner]
  type = Transient
  dt = 1
  end_time = 10
[]

[Outputs]
  file_base = fourDa
  exodus = true
  hide = dummy
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer/errors/master_transfer_wrong_sampler.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 3
    distributions = 'uniform'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []

  [wrong]
    type = MonteCarloSampler
    num_rows = 3
    distributions = 'uniform'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    sampler = sample
    input_files = sub.i
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = wrong
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochasticsub'
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

modules/porous_flow/test/tests/poroperm/poro_hm.i

# Test that porosity is correctly calculated.
# Porosity = biot + (phi0 - biot) * exp(-vol_strain + (biot - 1) / solid_bulk * (porepressure - ref_pressure))
# The parameters used are:
# biot = 0.7
# phi0 = 0.5
# vol_strain = 0.5
# solid_bulk = 0.3
# porepressure = 2
# ref_pressure = 3
# which yield porosity = 0.370255745860
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
  biot_coefficient = 0.7
[]

[Variables]
  [./porepressure]
    initial_condition = 2
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[ICs]
  [./disp_x]
    type = FunctionIC
    function = '0.5 * x'
    variable = disp_x
  [../]
[]

[Kernels]
  [./dummy_p]
    type = TimeDerivative
    variable = porepressure
  [../]
  [./dummy_x]
    type = TimeDerivative
    variable = disp_x
  [../]
  [./dummy_y]
    type = TimeDerivative
    variable = disp_y
  [../]
  [./dummy_z]
    type = TimeDerivative
    variable = disp_z
  [../]
[]

[AuxVariables]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[Postprocessors]
  [./porosity]
    type = PointValue
    variable = porosity
    point = '0 0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 3
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    ensure_positive = false
    porosity_zero = 0.5
    solid_bulk = 0.3
    reference_porepressure = 3
  [../]
[]

[Executioner]
  solve_type = Newton
  type = Transient
  num_steps = 1
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_4/brick4_template1.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick4_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_x
  [../]
  [./disp_x64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_x
  [../]
  [./disp_y59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_y
  [../]
  [./disp_y64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x59 disp_y59 disp_x64 disp_y64 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform_hard13.i

# Using CappedMohrCoulomb with compressive failure only
# checking for small deformation, with cubic hardening
# A single element is repeatedly compressed in z direction
# compressive_strength is set to 0.9Pa, compressive_strength_residual = 0.5Pa, and limit value = 1E-5
# This allows the hardening of the compressive strength to be observed

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-0.5E-6*z*t'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 3
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.9
    value_residual = 0.5
    internal_0 = -1E-5
    internal_limit = 0
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./compressive]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.0
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = compressive
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1.0
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard13
  csv = true
[]

modules/richards/test/tests/dirac/bh27.i

#2-phase version of bh07 (go to steadystate with borehole)
[Mesh]
  type = FileMesh
  file = bh07_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 1E-5'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1000 10000'
    x = '100 1000'
  [../]
[]


[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.6
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.6
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = FunctionIC
    variable = pwater
    function = 1E7
  [../]
  [./gas_ic]
    type = FunctionIC
    variable = pgas
    function = 1E7
  [../]
[]

[BCs]
  [./fix_outer_w]
    type = DirichletBC
    boundary = perimeter
    variable = pwater
    value = 1E7
  [../]
  [./fix_outer_g]
    type = DirichletBC
    boundary = perimeter
    variable = pgas
    value = 1E7
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh07.bh
    SumQuantityUO = borehole_total_outflow_mass
    fully_upwind = true
    variable = pwater
    unit_weight = '0 0 0'
    re_constant = 0.1594
    character = 2 # this is to make the length 1m borehole fill the entire 2m height
  [../]
  [./bh_gas_dummy]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh07.bh
    SumQuantityUO = borehole_total_outflow_mass
    fully_upwind = true
    variable = pgas
    unit_weight = '0 0 0'
    re_constant = 0.1594
    character = 2 # this is to make the length 1m borehole fill the entire 2m height
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
    execute_on = 'initial timestep_end'
  [../]

  [./water_mass]
    type = RichardsMass
    variable = pwater
    execute_on = 'initial timestep_end'
  [../]
  [./gas_mass]
    type = RichardsMass
    variable = pgas
    execute_on = 'initial timestep_end'
  [../]
[]



[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    mat_porosity = 0.1
    mat_permeability = '1E-11 0 0  0 1E-11 0  0 0 1E-11'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10 1E-10 20 1E-10 1E-100'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1000
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]

[]

[Outputs]
  file_base = bh27
  execute_on = 'initial timestep_end final'
  interval = 1000000
  exodus = true
[]

modules/richards/test/tests/user_objects/uo2.i

# Density User objects give the correct value
#
# If you want to add another test for another UserObject
# then add the UserObject, add a Function defining the expected result,
# add an AuxVariable and AuxKernel that will record the UserObjects value
# and finally add a NodalL2Error that compares this with the Function

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E6
  [../]
  [./DensityIdeal]
    type = RichardsDensityIdeal
    p0 = 33333
    slope = 1.1E-2
  [../]
  [./DensityMethane20degC]
    type = RichardsDensityMethane20degC
  [../]
  [./DensityVDW]
    type = RichardsDensityVDW
    a = 0.2303
    b = 4.31E-4
    temperature = 293
    molar_mass = 16.04246E-3
    infinity_ratio = 10
  [../]
  [./DensityConstBulkCut]
    type = RichardsDensityConstBulkCut
    dens0 = 1000
    bulk_mod = 2E6
    cut_limit = 1E6
    zero_point = -1E6
  [../]

  # following are unimportant in this test
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-6
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.10101
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.054321
    sum_s_res = 0.054321
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E5
  [../]
[]

[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = x
  [../]
  [./answer_DensityConstBulk]
    type = ParsedFunction
    value = dens0*exp(x/bulk_mod)
    vars = 'dens0 bulk_mod'
    vals = '1000 2E6'
  [../]
  [./answer_dDensityConstBulk]
    type = GradParsedFunction
    direction = '1 0 0'
    value = dens0*exp(x/bulk_mod)
    vars = 'dens0 bulk_mod'
    vals = '1000 2E6'
  [../]
  [./answer_d2DensityConstBulk]
    type = Grad2ParsedFunction
    direction = '1 0 0'
    value = dens0*exp(x/bulk_mod)
    vars = 'dens0 bulk_mod'
    vals = '1000 2E6'
  [../]

  [./answer_DensityIdeal]
    type = ParsedFunction
    value = slope*(x-p0)
    vars = 'p0 slope'
    vals = '33333 1.1E-2'
  [../]
  [./answer_dDensityIdeal]
    type = GradParsedFunction
    direction = '1 0 0'
    value = slope*(x-p0)
    vars = 'p0 slope'
    vals = '33333 1.1E-2'
  [../]
  [./answer_d2DensityIdeal]
    type = Grad2ParsedFunction
    direction = '1 0 0'
    value = slope*(x-p0)
    vars = 'p0 slope'
    vals = '33333 1.1E-2'
  [../]

  [./answer_DensityMethane20degC]
    type = ParsedFunction
    value = if(x>0,(0.00654576947608E-3*x+1.04357716547E-13*x^2),0)+if(x<0,0.1*(e^(6.54576947608E-5*x)-1),0)
  [../]
  [./answer_dDensityMethane20degC]
    type = GradParsedFunction
    direction = '1 0 0'
    value = if(x>0,(0.00654576947608E-3*x+1.04357716547E-13*x^2),0)+if(x<0,0.1*(e^(6.54576947608E-5*x)-1),0)
  [../]
  [./answer_d2DensityMethane20degC]
    type = Grad2ParsedFunction
    direction = '1 0 0'
    value = if(x>0,(0.00654576947608E-3*x+1.04357716547E-13*x^2),0)+if(x<0,0.1*(e^(6.54576947608E-5*x)-1),0)
  [../]

  [./answer_DensityVDW]
    type = ParsedFunction
    value = if(x>0,-(molar_mass*(-2+(2*pow(2,0.3333333333333333)*(a-3*b*(b*x+rt)))/pow(-2*pow(a,3)+9*pow(a,2)*b*(-2*b*x+rt)+pow(pow(a,3)*(a*pow(2*a+9*b*(2*b*x-rt),2)-4*pow(a-3*b*(b*x+rt),3)),0.5),0.3333333333333333)+(pow(2,0.6666666666666666)*pow(-2*pow(a,3)+9*pow(a,2)*b*(-2*b*x+rt)+pow(pow(a,3)*(a*pow(2*a+9*b*(2*b*x-rt),2)-4*pow(a-3*b*(b*x+rt),3)),0.5),0.3333333333333333))/a))/(6.*b)+(molar_mass*(-2+(2*pow(2,0.3333333333333333)*(a-3*b*(b*0+rt)))/pow(-2*pow(a,3)+9*pow(a,2)*b*(-2*b*0+rt)+pow(pow(a,3)*(a*pow(2*a+9*b*(2*b*0-rt),2)-4*pow(a-3*b*(b*0+rt),3)),0.5),0.3333333333333333)+(pow(2,0.6666666666666666)*pow(-2*pow(a,3)+9*pow(a,2)*b*(-2*b*0+rt)+pow(pow(a,3)*(a*pow(2*a+9*b*(2*b*0-rt),2)-4*pow(a-3*b*(b*0+rt),3)),0.5),0.3333333333333333))/a))/(6.*b),infinityratio*molar_mass*(e^(slope0*x)-1))
    vars = 'a b rt molar_mass infinityratio slope0'
    vals = '0.2303 0.000431 2436.1403 0.01604246 10 4.10485e-05'
  [../]
  [./answer_dDensityVDW]
    type = GradParsedFunction
    direction = '1 0 0'
    value = if(x>0,-(molar_mass*(-2+(2*pow(2,0.3333333333333333)*(a-3*b*(b*x+rt)))/pow(-2*pow(a,3)+9*pow(a,2)*b*(-2*b*x+rt)+pow(pow(a,3)*(a*pow(2*a+9*b*(2*b*x-rt),2)-4*pow(a-3*b*(b*x+rt),3)),0.5),0.3333333333333333)+(pow(2,0.6666666666666666)*pow(-2*pow(a,3)+9*pow(a,2)*b*(-2*b*x+rt)+pow(pow(a,3)*(a*pow(2*a+9*b*(2*b*x-rt),2)-4*pow(a-3*b*(b*x+rt),3)),0.5),0.3333333333333333))/a))/(6.*b),infinityratio*molar_mass*(e^(slope0*x)-1))
    vars = 'a b rt molar_mass infinityratio slope0'
    vals = '0.2303 0.000431 2436.1403 0.01604246 10 4.10485e-05'
  [../]
  [./answer_d2DensityVDW]
    type = Grad2ParsedFunction
    direction = '1 0 0'
    value = if(x>0,-(molar_mass*(-2+(2*pow(2,0.3333333333333333)*(a-3*b*(b*x+rt)))/pow(-2*pow(a,3)+9*pow(a,2)*b*(-2*b*x+rt)+pow(pow(a,3)*(a*pow(2*a+9*b*(2*b*x-rt),2)-4*pow(a-3*b*(b*x+rt),3)),0.5),0.3333333333333333)+(pow(2,0.6666666666666666)*pow(-2*pow(a,3)+9*pow(a,2)*b*(-2*b*x+rt)+pow(pow(a,3)*(a*pow(2*a+9*b*(2*b*x-rt),2)-4*pow(a-3*b*(b*x+rt),3)),0.5),0.3333333333333333))/a))/(6.*b),infinityratio*molar_mass*(e^(slope0*x)-1))
    vars = 'a b rt molar_mass infinityratio slope0'
    vals = '0.2303 0.000431 2436.1403 0.01604246 10 4.10485e-05'
  [../]

  [./answer_DensityConstBulkCut]
    type = ParsedFunction
    value = if(x<zero_pt,0,if(x>cut_limit,dens0*exp(x/bulk_mod),(3*cut_limit-2*x-zero_pt)*(x-zero_pt)*(x-zero_pt)*dens0*exp(x/bulk_mod)/(cut_limit-zero_pt)/(cut_limit-zero_pt)/(cut_limit-zero_pt)))
    vars = 'dens0 bulk_mod zero_pt cut_limit'
    vals = '1000 2E6 -1E6 1E6'
  [../]
  [./answer_dDensityConstBulkCut]
    type = GradParsedFunction
    direction = '1 0 0'
    value = if(x<zero_pt,0,if(x>cut_limit,dens0*exp(x/bulk_mod),(3*cut_limit-2*x-zero_pt)*(x-zero_pt)*(x-zero_pt)*dens0*exp(x/bulk_mod)/(cut_limit-zero_pt)/(cut_limit-zero_pt)/(cut_limit-zero_pt)))
    vars = 'dens0 bulk_mod zero_pt cut_limit'
    vals = '1000 2E6 -1E6 1E6'
  [../]
  [./answer_d2DensityConstBulkCut]
    type = Grad2ParsedFunction
    direction = '1 0 0'
    value = if(x<zero_pt,0,if(x>cut_limit,dens0*exp(x/bulk_mod),(3*cut_limit-2*x-zero_pt)*(x-zero_pt)*(x-zero_pt)*dens0*exp(x/bulk_mod)/(cut_limit-zero_pt)/(cut_limit-zero_pt)/(cut_limit-zero_pt)))
    vars = 'dens0 bulk_mod zero_pt cut_limit'
    vals = '1000 2E6 -1E6 1E6'
  [../]
[]

[AuxVariables]
  [./DensityConstBulk_Aux]
  [../]
  [./dDensityConstBulk_Aux]
  [../]
  [./d2DensityConstBulk_Aux]
  [../]

  [./DensityIdeal_Aux]
  [../]
  [./dDensityIdeal_Aux]
  [../]
  [./d2DensityIdeal_Aux]
  [../]

  [./DensityMethane20degC_Aux]
  [../]
  [./dDensityMethane20degC_Aux]
  [../]
  [./d2DensityMethane20degC_Aux]
  [../]

  [./DensityVDW_Aux]
  [../]
  [./dDensityVDW_Aux]
  [../]
  [./d2DensityVDW_Aux]
  [../]

  [./DensityConstBulkCut_Aux]
  [../]
  [./dDensityConstBulkCut_Aux]
  [../]
  [./d2DensityConstBulkCut_Aux]
  [../]

  [./check_Aux]
  [../]
[]

[AuxKernels]
  [./DensityConstBulk_AuxK]
    type = RichardsDensityAux
    variable = DensityConstBulk_Aux
    density_UO = DensityConstBulk
    pressure_var = pressure
  [../]
  [./dDensityConstBulk_AuxK]
    type = RichardsDensityPrimeAux
    variable = dDensityConstBulk_Aux
    density_UO = DensityConstBulk
    pressure_var = pressure
  [../]
  [./d2DensityConstBulk_AuxK]
    type = RichardsDensityPrimePrimeAux
    variable = d2DensityConstBulk_Aux
    density_UO = DensityConstBulk
    pressure_var = pressure
  [../]

  [./DensityIdeal_AuxK]
    type = RichardsDensityAux
    variable = DensityIdeal_Aux
    density_UO = DensityIdeal
    pressure_var = pressure
  [../]
  [./dDensityIdeal_AuxK]
    type = RichardsDensityPrimeAux
    variable = dDensityIdeal_Aux
    density_UO = DensityIdeal
    pressure_var = pressure
  [../]
  [./d2DensityIdeal_AuxK]
    type = RichardsDensityPrimePrimeAux
    variable = d2DensityIdeal_Aux
    density_UO = DensityIdeal
    pressure_var = pressure
  [../]

  [./DensityMethane20degC_AuxK]
    type = RichardsDensityAux
    variable = DensityMethane20degC_Aux
    density_UO = DensityMethane20degC
    pressure_var = pressure
  [../]
  [./dDensityMethane20degC_AuxK]
    type = RichardsDensityPrimeAux
    variable = dDensityMethane20degC_Aux
    density_UO = DensityMethane20degC
    pressure_var = pressure
  [../]
  [./d2DensityMethane20degC_AuxK]
    type = RichardsDensityPrimePrimeAux
    variable = d2DensityMethane20degC_Aux
    density_UO = DensityMethane20degC
    pressure_var = pressure
  [../]

  [./DensityVDW_AuxK]
    type = RichardsDensityAux
    variable = DensityVDW_Aux
    density_UO = DensityVDW
    pressure_var = pressure
  [../]
  [./dDensityVDW_AuxK]
    type = RichardsDensityPrimeAux
    variable = dDensityVDW_Aux
    density_UO = DensityVDW
    pressure_var = pressure
  [../]
  [./d2DensityVDW_AuxK]
    type = RichardsDensityPrimePrimeAux
    variable = d2DensityVDW_Aux
    density_UO = DensityVDW
    pressure_var = pressure
  [../]

  [./DensityConstBulkCut_AuxK]
    type = RichardsDensityAux
    variable = DensityConstBulkCut_Aux
    density_UO = DensityConstBulkCut
    pressure_var = pressure
  [../]
  [./dDensityConstBulkCut_AuxK]
    type = RichardsDensityPrimeAux
    variable = dDensityConstBulkCut_Aux
    density_UO = DensityConstBulkCut
    pressure_var = pressure
  [../]
  [./d2DensityConstBulkCut_AuxK]
    type = RichardsDensityPrimePrimeAux
    variable = d2DensityConstBulkCut_Aux
    density_UO = DensityConstBulkCut
    pressure_var = pressure
  [../]

  [./check_AuxK]
    type = FunctionAux
    variable = check_Aux
    function = answer_d2DensityConstBulkCut
  [../]
[]

[Postprocessors]
  [./cf_DensityConstBulk]
    type = NodalL2Error
    function = answer_DensityConstBulk
    variable = DensityConstBulk_Aux
  [../]
  [./cf_dDensityConstBulk]
    type = NodalL2Error
    function = answer_dDensityConstBulk
    variable = dDensityConstBulk_Aux
  [../]
  [./cf_d2DensityConstBulk]
    type = NodalL2Error
    function = answer_d2DensityConstBulk
    variable = d2DensityConstBulk_Aux
  [../]

  [./cf_DensityIdeal]
    type = NodalL2Error
    function = answer_DensityIdeal
    variable = DensityIdeal_Aux
  [../]
  [./cf_dDensityIdeal]
    type = NodalL2Error
    function = answer_dDensityIdeal
    variable = dDensityIdeal_Aux
  [../]
  [./cf_d2DensityIdeal]
    type = NodalL2Error
    function = answer_d2DensityIdeal
    variable = d2DensityIdeal_Aux
  [../]

  [./cf_DensityMethane20degC]
    type = NodalL2Error
    function = answer_DensityMethane20degC
    variable = DensityMethane20degC_Aux
  [../]
  [./cf_dDensityMethane20degC]
    type = NodalL2Error
    function = answer_dDensityMethane20degC
    variable = dDensityMethane20degC_Aux
  [../]
  [./cf_d2DensityMethane20degC]
    type = NodalL2Error
    function = answer_d2DensityMethane20degC
    variable = d2DensityMethane20degC_Aux
  [../]

  [./cf_DensityVDW]
    type = NodalL2Error
    function = answer_DensityVDW
    variable = DensityVDW_Aux
  [../]
  [./cf_dDensityVDW]
    type = NodalL2Error
    function = answer_dDensityVDW
    variable = dDensityVDW_Aux
  [../]
  [./cf_d2DensityVDW]
    type = NodalL2Error
    function = answer_d2DensityVDW
    variable = d2DensityVDW_Aux
  [../]

  [./cf_DensityConstBulkCut]
    type = NodalL2Error
    function = answer_DensityConstBulkCut
    variable = DensityConstBulkCut_Aux
  [../]
  [./cf_dDensityConstBulkCut]
    type = NodalL2Error
    function = answer_dDensityConstBulkCut
    variable = dDensityConstBulkCut_Aux
  [../]
  [./cf_d2DensityConstBulkCut]
    type = NodalL2Error
    function = answer_d2DensityConstBulkCut
    variable = d2DensityConstBulkCut_Aux
  [../]
[]



#############################################################################
#
# Following is largely unimportant as we are not running an actual similation
#
#############################################################################
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = -5E6
  xmax = 5E6
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[Kernels]
  active = 'richardst'
  [./richardst]
    type = RichardsMassChange
    richardsVarNames_UO = PPNames
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    richardsVarNames_UO = PPNames
    variable = pressure
  [../]
[]

[Materials]
  [./unimportant_material]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-20 0 0  0 1E-20 0  0 0 1E-20'
    richardsVarNames_UO = PPNames
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = SeffVG
    SUPG_UO = SUPGstandard
    viscosity = 1E-3
    gravity = '0 0 -10'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  [./does_nothing]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E50 1E50 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
  dt = 1E-100
[]

[Outputs]
  execute_on = 'timestep_end'
  active = 'csv'
  file_base = uo2
  [./csv]
    type = CSV
    [../]
  [./exodus]
    type = Exodus
    hide = pressure
  [../]
[]

modules/porous_flow/test/tests/chemistry/precipitation_porosity_change.i

# Test to illustrate porosity evolution due to precipitation
#
# The precipitation reaction
#
# a <==> mineral
#
# produces "mineral".  Using theta = 1 = eta, the DE that describes the prcipitation is
# reaction_rate = rate * surf_area * molar_vol (1 - (1 / eqm_const) * (act_coeff * a)^stoi)
#
# The following parameters are used
#
# T_ref = 0.5 K
# T = 1 K
# activation_energy = 3 J/mol
# gas_constant = 6 J/(mol K)
# kinetic_rate_at_ref_T = 0.60653 mol/(m^2 s)
# These give rate = 0.60653 * exp(1/2) = 1 mol/(m^2 s)
#
# surf_area = 0.5 m^2/L
# molar_volume = 2 L/mol
# These give rate * surf_area * molar_vol = 1 s^-1
#
# equilibrium_constant = 0.5 (dimensionless)
# primary_activity_coefficient = 2 (dimensionless)
# stoichiometry = 1 (dimensionless)
# This means that 1 - (1 / eqm_const) * (act_coeff * a)^stoi = 1 - 4 a, which is negative (ie precipitation) for a > 0.25
#
# a is held fixed at 0.5, so
# reaction_rate = - (1 - 2) = 1
#
# The mineral volume fraction evolves according to
# Mineral = mineral_old + dt * porosity_old * reaction_rate = mineral_old + dt * porosity_old
#
# Porosity evolves according to
# porosity = porosity(t=0) - (mineral - mineral(t=0))
#          = porosity(t=0) - (mineral_old + dt * porosity_old * reaction_rate - mineral(t=0))
#
# Specifically:
# time mineral porosity
# 0    0.2     0.6
# 0.1  0.26    0.54
# 0.2  0.314   0.486
# 0.3  0.3626  0.4374
# 0.4  0.40634 0.39366
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./dummy]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 0.5
  [../]
  [./a]
    initial_condition = 0.5
  [../]
  [./ini_mineral_conc]
    initial_condition = 0.2
  [../]
  [./mineral]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./porosity]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./mineral]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = mineral
  [../]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./dummy]
    type = Diffusion
    variable = dummy
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = dummy
    number_fluid_phases = 1
    number_fluid_components = 2
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 1
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = dummy
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = a
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = 2
    reactions = 1
    specific_reactive_surface_area = 0.5
    kinetic_rate_constant = 0.6065306597126334
    activation_energy = 3
    molar_volume = 2
    gas_constant = 6
    reference_temperature = 0.5
  [../]
  [./mineral_conc]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_mineral_conc
  [../]
  [./porosity]
    type = PorousFlowPorosity
    chemical = true
    porosity_zero = 0.6
    reference_chemistry = ini_mineral_conc
    initial_mineral_concentrations = ini_mineral_conc
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1E-10
  dt = 0.1
  end_time = 0.4
[]

[Postprocessors]
  [./porosity]
    type = PointValue
    point = '0 0 0'
    variable = porosity
  [../]
  [./c]
    type = PointValue
    point = '0 0 0'
    variable = mineral
  [../]
[]
[Outputs]
  csv = true
  perf_graph = true
[]

modules/richards/test/tests/buckley_leverett/bl02.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 150
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2.0E6
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-3
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]

[AuxKernels]
  active = 'calculate_seff'
  [./calculate_seff]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[BCs]
  active = 'left'
  [./left]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 980000
  [../]
[]

[Kernels]
  active = 'richardsf richardst'

  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[Functions]
 active = 'initial_pressure'
  [./initial_pressure]
    type = ParsedFunction
    value = max((1000000-x/5*1000000)-20000,-20000)
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 20'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 50

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.01
  [../]

[]

[Outputs]
  file_base = bl02
  interval = 1000000
  exodus = true
[]

modules/porous_flow/test/tests/mass_conservation/mass06.i

# Checking that the mass postprocessor correctly calculates the mass
# of each component in each phase, as well as the total mass of each
# component in all phases. Also tests that optional saturation threshold
# gives the correct mass
# 2phase, 2component, constant porosity
# saturation_threshold set to 0.6 for phase 1

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./sat]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]

[ICs]
  [./pinit]
    type = ConstantIC
    value = 1
    variable = pp
  [../]
  [./satinit]
    type = FunctionIC
    function = 1-x
    variable = sat
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sat
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp sat'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = pp
    phase1_saturation = sat
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Postprocessors]
  [./comp0_phase0_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    phase = 0
  [../]
  [./comp0_phase1_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    phase = 1
  [../]
  [./comp0_total_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
  [../]
  [./comp1_phase0_mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = 0
  [../]
  [./comp1_phase1_mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = 1
  [../]
  [./comp1_total_mass]
    type = PorousFlowFluidMass
    fluid_component = 1
  [../]
  [./comp1_phase1_threshold_mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = 1
    saturation_threshold = 0.6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1e-16
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mass06
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_2/brick2_template1.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick2_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_x26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_x
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./disp_y26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x7 disp_y7 disp_x26 disp_y26 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_1/brick1_template2_sm.i

[Mesh]
  file = brick1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]


[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_x
  [../]
  [./disp_x13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_y
  [../]
  [./disp_y13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_x8 disp_x13 disp_x16 disp_y5 disp_y8 disp_y13 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/combined/examples/mortar/eigenstrain.i

#
# Eigenstrain with Mortar gradient periodicity
#

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 50
    ny = 50
    xmin = -0.5
    xmax = 0.5
    ymin = -0.5
    ymax = 0.5
  []
  [./cnode]
    input = gen
    type = ExtraNodesetGenerator
    coord = '0.0 0.0'
    new_boundary = 100
  [../]
  [./anode]
    input = cnode
    type = ExtraNodesetGenerator
    coord = '0.0 0.5'
    new_boundary = 101
  [../]
  [slave_x]
    input = anode
    type = LowerDBlockFromSidesetGenerator
    sidesets = '3'
    new_block_id = 10
    new_block_name = "slave_x"
  []
  [master_x]
    input = slave_x
    type = LowerDBlockFromSidesetGenerator
    sidesets = '1'
    new_block_id = 12
    new_block_name = "master_x"
  []
  [slave_y]
    input = master_x
    type = LowerDBlockFromSidesetGenerator
    sidesets = '0'
    new_block_id = 11
    new_block_name = "slave_y"
  []
  [master_y]
    input = slave_y
    type = LowerDBlockFromSidesetGenerator
    sidesets = '2'
    new_block_id = 13
    new_block_name = "master_y"
  []
[]

[GlobalParams]
  derivative_order = 2
  enable_jit = true
  displacements = 'disp_x disp_y'
[]

# AuxVars to compute the free energy density for outputting
[AuxVariables]
  [./local_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./local_free_energy]
    type = TotalFreeEnergy
    block = 0
    execute_on = 'initial LINEAR'
    variable = local_energy
    interfacial_vars = 'c'
    kappa_names = 'kappa_c'
  [../]
[]

[Variables]
  # Solute concentration variable
  [./c]
    [./InitialCondition]
      type = RandomIC
      min = 0.49
      max = 0.51
    [../]
    block = 0
  [../]
  [./w]
    block = 0
  [../]

  # Mesh displacement
  [./disp_x]
    block = 0
  [../]
  [./disp_y]
    block = 0
  [../]

  # Lagrange multipliers for gradient component periodicity
  [./lm_left_right_xx]
    order = FIRST
    family = LAGRANGE
    block = slave_x
  [../]
  [./lm_left_right_xy]
    order = FIRST
    family = LAGRANGE
    block = slave_x
  [../]
  [./lm_left_right_yx]
    order = FIRST
    family = LAGRANGE
    block = slave_x
  [../]
  [./lm_left_right_yy]
    order = FIRST
    family = LAGRANGE
    block = slave_x
  [../]

  [./lm_up_down_xx]
    order = FIRST
    family = LAGRANGE
    block = slave_y
  [../]
  [./lm_up_down_xy]
    order = FIRST
    family = LAGRANGE
    block = slave_y
  [../]
  [./lm_up_down_yx]
    order = FIRST
    family = LAGRANGE
    block = slave_y
  [../]
  [./lm_up_down_yy]
    order = FIRST
    family = LAGRANGE
    block = slave_y
  [../]
[]

[Constraints]
  [./ud_disp_x_grad_x]
    type = EqualGradientConstraint
    variable = lm_up_down_xx
    component = 0
    slave_variable = disp_x
    slave_boundary = bottom
    master_boundary = top
    slave_subdomain = slave_y
    master_subdomain = master_y
    periodic = true
  [../]
  [./ud_disp_x_grad_y]
    type = EqualGradientConstraint
    variable = lm_up_down_xy
    component = 1
    slave_variable = disp_x
    slave_boundary = bottom
    master_boundary = top
    slave_subdomain = slave_y
    master_subdomain = master_y
    periodic = true
  [../]
  [./ud_disp_y_grad_x]
    type = EqualGradientConstraint
    variable = lm_up_down_yx
    component = 0
    slave_variable = disp_y
    slave_boundary = bottom
    master_boundary = top
    slave_subdomain = slave_y
    master_subdomain = master_y
    periodic = true
  [../]
  [./ud_disp_y_grad_y]
    type = EqualGradientConstraint
    variable = lm_up_down_yy
    component = 1
    slave_variable = disp_y
    slave_boundary = bottom
    master_boundary = top
    slave_subdomain = slave_y
    master_subdomain = master_y
    periodic = true
  [../]

  [./lr_disp_x_grad_x]
    type = EqualGradientConstraint
    variable = lm_left_right_xx
    component = 0
    slave_variable = disp_x
    slave_boundary = left
    master_boundary = right
    slave_subdomain = slave_x
    master_subdomain = master_x
    periodic = true
  [../]
  [./lr_disp_x_grad_y]
    type = EqualGradientConstraint
    variable = lm_left_right_xy
    component = 1
    slave_variable = disp_x
    slave_boundary = left
    master_boundary = right
    slave_subdomain = slave_x
    master_subdomain = master_x
    periodic = true
  [../]
  [./lr_disp_y_grad_x]
    type = EqualGradientConstraint
    variable = lm_left_right_yx
    component = 0
    slave_variable = disp_y
    slave_boundary = left
    master_boundary = right
    slave_subdomain = slave_x
    master_subdomain = master_x
    periodic = true
  [../]
  [./lr_disp_y_grad_y]
    type = EqualGradientConstraint
    variable = lm_left_right_yy
    component = 1
    slave_variable = disp_y
    slave_boundary = left
    master_boundary = right
    slave_subdomain = slave_x
    master_subdomain = master_x
    periodic = true
  [../]
[]

[Kernels]
  # Set up stress divergence kernels
  [./TensorMechanics]
    block = 0
  [../]

  # Cahn-Hilliard kernels
  [./c_dot]
    type = CoupledTimeDerivative
    variable = w
    v = c
    block = 0
  [../]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    block = 0
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
    block = 0
  [../]
[]

[Materials]
  # declare a few constants, such as mobilities (L,M) and interface gradient prefactors (kappa*)
  [./consts]
    type = GenericConstantMaterial
    block = '0 10 11'
    prop_names  = 'M   kappa_c'
    prop_values = '0.2 0.01   '
  [../]

  [./shear1]
    type = GenericConstantRankTwoTensor
    block = 0
    tensor_values = '0 0 0 0 0 0.5'
    tensor_name = shear1
  [../]
  [./shear2]
    type = GenericConstantRankTwoTensor
    block = 0
    tensor_values = '0 0 0 0 0 -0.5'
    tensor_name = shear2
  [../]
  [./expand3]
    type = GenericConstantRankTwoTensor
    block = 0
    tensor_values = '1 1 0 0 0 0'
    tensor_name = expand3
  [../]

  [./weight1]
    type = DerivativeParsedMaterial
    block = 0
    function = '0.3*c^2'
    f_name = weight1
    args = c
  [../]
  [./weight2]
    type = DerivativeParsedMaterial
    block = 0
    function = '0.3*(1-c)^2'
    f_name = weight2
    args = c
  [../]
  [./weight3]
    type = DerivativeParsedMaterial
    block = 0
    function = '4*(0.5-c)^2'
    f_name = weight3
    args = c
  [../]

  # matrix phase
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '1 1'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y'
    eigenstrain_names = eigenstrain
  [../]

  [./eigenstrain]
    type = CompositeEigenstrain
    block = 0
    tensors = 'shear1  shear2  expand3'
    weights = 'weight1 weight2 weight3'
    args = c
    eigenstrain_name = eigenstrain
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]

  # chemical free energies
  [./chemical_free_energy]
    type = DerivativeParsedMaterial
    block = 0
    f_name = Fc
    function = '4*c^2*(1-c)^2'
    args = 'c'
    outputs = exodus
    output_properties = Fc
  [../]

  # elastic free energies
  [./elastic_free_energy]
    type = ElasticEnergyMaterial
    f_name = Fe
    block = 0
    args = 'c'
    outputs = exodus
    output_properties = Fe
  [../]

  # free energy (chemical + elastic)
  [./free_energy]
    type = DerivativeSumMaterial
    block = 0
    f_name = F
    sum_materials = 'Fc Fe'
    args = 'c'
  [../]
[]

[BCs]
  [./Periodic]
    [./up_down]
      primary = top
      secondary = bottom
      translation = '0 -1 0'
      variable = 'c w'
    [../]
    [./left_right]
      primary = left
      secondary = right
      translation = '1 0 0'
      variable = 'c w'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = disp_x
    value = 0
  [../]
  [./centerfix_y]
    type = DirichletBC
    boundary = 100
    variable = disp_y
    value = 0
  [../]

  # fix side point x coordinate to inhibit rotation
  [./angularfix]
    type = DirichletBC
    boundary = 101
    variable = disp_x
    value = 0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

# We monitor the total free energy and the total solute concentration (should be constant)
[Postprocessors]
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    block = 0
    execute_on = 'initial TIMESTEP_END'
    variable = local_energy
  [../]
  [./total_solute]
    type = ElementIntegralVariablePostprocessor
    block = 0
    execute_on = 'initial TIMESTEP_END'
    variable = c
  [../]
  [./min]
    type = ElementExtremeValue
    block = 0
    execute_on = 'initial TIMESTEP_END'
    value_type = min
    variable = c
  [../]
  [./max]
    type = ElementExtremeValue
    block = 0
    execute_on = 'initial TIMESTEP_END'
    value_type = max
    variable = c
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  line_search = basic

  # mortar currently does not support MPI parallelization
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = ' lu       NONZERO               1e-10'

  l_max_its = 30
  nl_max_its = 12

  l_tol = 1.0e-4

  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 200

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.01
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  print_linear_residuals = false
  exodus = true
  [./table]
    type = CSV
    delimiter = ' '
  [../]
[]

modules/functional_expansion_tools/examples/3D_volumetric_Cartesian/sub.i

# Basic example coupling a master and sub app in a 3D Cartesian volume.
#
# The master app provides field values to the sub app via Functional Expansions, which then performs
# its calculations. The sub app's solution field values are then transferred back to the master app
# and coupled into the solution of the master app solution.
#
# This example couples Functional Expansions via AuxVariable.
#
# Note: this problem is not light, and may take a few minutes to solve.
[Mesh]
  type = GeneratedMesh
  dim = 3

  xmin = 0.0
  xmax = 10.0
  nx = 15

  ymin = 1.0
  ymax = 11.0
  ny = 25

  zmin = 2.0
  zmax = 12.0
  nz = 35
[]

# Non-copy transfers only work with AuxVariable, but nothing will be solved without a variable
# defined. The solution is to define an empty variable tha does nothing, but causes MOOSE to solve
# the AuxKernels that we need.
[Variables]
  [./empty]
  [../]
[]

[AuxVariables]
  [./s]
    order = FIRST
    family = LAGRANGE
  [../]
  [./m_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

# We must have a kernel for every variable, hence this null kernel to match the variable 'empty'
[Kernels]
  [./null_kernel]
    type = NullKernel
    variable = empty
  [../]
[]

[AuxKernels]
  [./reconstruct_m_in]
    type = FunctionSeriesToAux
    function = FX_Basis_Value_Sub
    variable = m_in
  [../]
  [./calculate_s] # Something to make 's' change each time, but allow a converging solution
    type = ParsedAux
    variable = s
    args = m_in
    function = '2*exp(-m_in/0.8)'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3   4   5'
    physical_bounds = '0.0  10.0    1.0 11.0    2.0 12.0'
    x = Legendre
    y = Legendre
    z = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Sub
    variable = s
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/frictionless_kinematic_dirac_sm.i

# This is a dirac (contact formulation) version of frictionless_kinematic.i
[Mesh]
  file = blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e7
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.1
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = frictionless
    penalty = 1e+6
    system = dirackernel
  [../]
[]

modules/phase_field/test/tests/mobility_derivative/matdiffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  xmax = 15.0
  ymax = 15.0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = CrossIC
      x1 = 0.0
      x2 = 30.0
      y1 = 0.0
      y2 = 30.0
    [../]
  [../]
  [./d]
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 15
      y1 = 15
      radius = 8
      int_width = 3
      invalue = 2
      outvalue = 0
    [../]
  [../]
[]

[Kernels]
  [./cres]
    type = MatDiffusion
    variable = c
    diffusivity = Dc
    args = d
  [../]
  [./ctime]
    type = TimeDerivative
    variable = c
  [../]

  [./dres]
    type = MatDiffusion
    variable = d
    diffusivity = Dd
    args = c
  [../]
  [./dtime]
    type = TimeDerivative
    variable = d
  [../]
[]

[Materials]
  [./Dc]
    type = DerivativeParsedMaterial
    f_name = Dc
    function = '0.01+c^2+d'
    args = 'c d'
    derivative_order = 1
  [../]
  [./Dd]
    type = DerivativeParsedMaterial
    f_name = Dd
    function = 'd^2+c+1.5'
    args = 'c d'
    derivative_order = 1
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  lu           1'

  dt = 1
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/gravity_head_1/gh14.i

# unsaturated = true
# gravity = false
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = -1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh14
  exodus = true
[]

test/tests/utils/2d_linear_interpolation/xyz_error.i

[Mesh]
  file = cube.e
  # This problem only has 1 element, so using DistributedMesh in parallel
  # isn't really an option, and we don't care that much about DistributedMesh
  # in serial.
  parallel_type = replicated
[]

[Variables]

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]


  [./u]
    type = PiecewiseBilinear
    #x = '0 1 3' # Testing this error
    y = '0 1 3'
    z = '0 0 0 0 1 3 0 5 7'
    axis = 0
  [../]
[] # End Functions

[Kernels]

  [./diffu]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]

  [./u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = u
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 2
  nl_rel_tol = 1e-12
[]

[Outputs]
[]

test/tests/outputs/png/wedge.i

[Mesh]
  file = wedge.e
  uniform_refine = 1
[]

[Functions]
  active = 'tr_x tr_y'

  [./tr_x]
    type = ParsedFunction
    value = -x
  [../]

  [./tr_y]
    type = ParsedFunction
    value = y
  [../]
[]

[AuxVariables]
  [two_u]
  []
[]

[AuxKernels]
  [two_u]
    type = ParsedAux
    variable = two_u
    args = 'u'
    function = '2*u'
  []
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff forcing dot'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
    x_center = -0.5
    y_center = 3.0
    x_spread = 0.2
    y_spread = 0.2
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  #active = ' '

  [./Periodic]
    [./x]
      primary = 1
      secondary = 2
      transform_func = 'tr_x tr_y'
      inv_transform_func = 'tr_x tr_y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  num_steps = 6
  solve_type = NEWTON
[]

[Outputs]
  [png]
    type = PNGOutput
    resolution = 25
    color = RWB
    variable = 'two_u'
  []
[]

modules/combined/test/tests/evolving_mass_density/rz_tensors.i

#  Constant mass in RZ using Tensor Mechanics
#
# This test forces an RZ mesh to move through a series of displacements
#   in order to test whether the mass is constant.  The density is chosen
#   such that the mass is 2.5.
# This test is a duplicate of the rz.i test for solid mechanics, and the
#   output of this tensor mechanics test is compared to the original
#   solid mechanics output.  The duplication is necessary to test the
#   migrated tensor mechanics version while maintaining tests for solid mechanics.

[Mesh]
  file = elastic_patch_rz.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Functions]
  [./x101]
    type = PiecewiseLinear
    x = '0 5 6'
    y = '0 0 0.24'
  [../]
  [./y101]
    type = PiecewiseLinear
    x = '0 6'
    y = '0 0'
  [../]
  [./x102]
    type = PiecewiseLinear
    x = '0 4 5'
    y = '0 0 0.24'
  [../]
  [./y102]
    type = PiecewiseLinear
    x = '0 1 2 3'
    y = '0 0 0.12 0'
  [../]
  [./x103]
    type = PiecewiseLinear
    x = '0 4 5'
    y = '0 0 0.24'
  [../]
  [./y103]
    type = PiecewiseLinear
    x = '0 1    3    4'
    y = '0 0.12 0.12 0'
  [../]
  [./x104]
    type = PiecewiseLinear
    x = '0 5 6'
    y = '0 0 0.24'
  [../]
  [./y104]
    type = PiecewiseLinear
    x = '0 2 3    4'
    y = '0 0 0.12 0'
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[BCs]

  [./101x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 101
    function = x101
  [../]
  [./101y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 101
    function = y101
  [../]

  [./102x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 102
    function = x102
  [../]
  [./102y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 102
    function = y102
  [../]

  [./103x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 103
    function = x103
  [../]
  [./103y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 103
    function = y103
  [../]

  [./104x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 104
    function = x104
  [../]
  [./104y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 104
    function = y104
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = PATCH
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

  [./small_strain_rz]
    type = ComputeAxisymmetricRZSmallStrain
    block = PATCH
  [../]

  [./elastic_stress]
    type = ComputeLinearElasticStress
    block = PATCH
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively
  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'
  nl_abs_tol = 1e-10
  l_max_its = 20

  start_time = 0.0
  dt = 1
  num_steps = 6
  end_time = 6.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
    file_base = rz_out
  [../]
[]

[Postprocessors]
  [./mass]
    type = Mass
    variable = disp_x
    execute_on = 'initial timestep_end'
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform1_cosserat.i

# Using Cosserat with large layer thickness, so this should reduce to standard
# Using CappedMohrCoulombCosserat with tensile failure only
# checking for small deformation
# A single element is stretched by 1E-6m in z direction, and by small amounts in x and y directions
# stress_zz = Youngs Modulus*Strain = 2E6*1E-6 = 2 Pa
# tensile_strength is set to 1Pa
# Then the final stress should return to the yeild surface and the minimum principal stress value should be 1pa.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  perform_finite_strain_rotations = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.2E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 4.0E6
    poisson = 0.0
    layer_thickness = 1.0
    joint_normal_stiffness = 1.0E16
    joint_shear_stiffness = 1.0E16
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
  [../]
  [./tensile]
    type = CappedMohrCoulombCosseratStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.0
    yield_function_tol = 1.0E-9
    host_youngs_modulus = 4.0E6
    host_poissons_ratio = 0.0
  [../]
  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  nl_abs_tol = 1E-10
  type = Transient
[]


[Outputs]
  file_base = small_deform1_cosserat
  csv = true
[]

tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7a_coarse.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 3
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
[]

[Variables]
  [pressure]
  []
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[AuxVariables]
  [velocity]
    order = CONSTANT
    family = MONOMIAL_VEC
  []
[]

[Kernels]
  [darcy_pressure]
    type = DarcyPressure
    variable = pressure
  []
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
  [heat_convection]
    type = DarcyAdvection
    variable = temperature
    pressure = pressure
  []
[]

[AuxKernels]
  [velocity]
    type = DarcyVelocity
    variable = velocity
    execute_on = timestep_end
    pressure = pressure
  []
[]

[BCs]
  [inlet]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 4000 # (Pa) From Figure 2 from paper.  First data point for 1mm spheres.
  []
  [outlet]
    type = DirichletBC
    variable = pressure
    boundary = right
    value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
  []
  [inlet_temperature]
    type = FunctionDirichletBC
    variable = temperature
    boundary = left
    function = 'if(t<0,350+50*t,350)'
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = right
  []
[]

[Materials]
  [column]
    type = PackedColumn
    radius = 1
    temperature = temperature
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  automatic_scaling = true

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  end_time = 100
  dt = 0.25
  start_time = -1

  steady_state_tolerance = 1e-5
  steady_state_detection = true

  [TimeStepper]
    type = FunctionDT
    function = 'if(t<0,0.1,0.25)'
  []
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/num_iterations/num_iterations.i

# This tests if the correct number of nonlinear and linear iterations for a time
# step are recovered for each time integrator scheme.
#
# The gold files for each time integrator scheme were created manually by
# observing the numbers of iterations per time step.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./time_der]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    preset = false
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    preset = false
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  [./TimeIntegrator]
    # The time integrator type is provided by the tests file
  [../]
  num_steps = 2
  abort_on_solve_fail = true
  dt = 1e-4

  nl_abs_tol = 1e-8
  nl_rel_tol = 0
  nl_max_its = 5
[]

[Postprocessors]
  [./num_nonlinear_iterations]
    type = NumNonlinearIterations
  [../]
  [./num_linear_iterations]
    type = NumLinearIterations
  [../]
[]

[Outputs]
  csv = true
[]

test/tests/kernels/adv_diff_reaction/adv_diff_reaction_transient_test.i

[Mesh]
  dim              = 2
  file             = Mesh12.e
[]

[Variables]
  active = 'phi'

  [./phi]
    order  = SECOND
    family = LAGRANGE
  [../]

[]

[Kernels]

  active = 'trans advection diffusion source'

  [./trans]
    type     = TimeDerivative
    variable = phi
  [../]

  [./advection]
    type     = Advection0
    variable = phi
    Au       = 10.
    Bu       = -6.
    Cu       =  5.
    Av       = 10.
    Bv       =  8.
    Cv       = -1.
  [../]

  [./diffusion]
    type     = Diffusion0
    variable = phi
    Ak       = 10.
    Bk       = 0.1
    Ck       = 0.1
  [../]

  [./source]
    type     = ForcingFunctionXYZ0
    variable = phi
    omega0   = 2.
    A0       = 1.
    B0       = 1.2
    C0       = 0.8
    Au       = 10.
    Bu       = -6.
    Cu       =  5.
    Av       = 10.
    Bv       =  8.
    Cv       = -1.
    Ak       = 10.
    Bk       = 0.1
    Ck       = 0.1
  [../]

[]

[BCs]

  active = 'btm_sca rgt_sca top_sca lft_sca'

  [./btm_sca]
    type     = DirichletBCfuncXYZ0
    variable = phi
    boundary = 1
    omega0   = 2.
    A0       = 1.
    B0       = 1.2
    C0       = 0.8
  [../]

  [./rgt_sca]
    type     = DirichletBCfuncXYZ0
    variable = phi
    boundary = 2
    omega0   = 2.
    A0       = 1.
    B0       = 1.2
    C0       = 0.8
  [../]

  [./top_sca]
    type     = DirichletBCfuncXYZ0
    variable = phi
    boundary = 3
    omega0   = 2.
    A0       = 1.
    B0       = 1.2
    C0       = 0.8
  [../]

  [./lft_sca]
    type     = DirichletBCfuncXYZ0
    variable = phi
    boundary = 4
    omega0   = 2.
    A0       = 1.
    B0       = 1.2
    C0       = 0.8
  [../]

[]

[Executioner]
  type                 = Transient #Steady
  scheme               = bdf2
  nl_rel_tol           = 1e-10

  solve_type = 'PJFNK'

  petsc_options_iname  = '-pc_factor_levels -pc_factor_mat_ordering_type'
  petsc_options_value  = '20 rcm'

  start_time      = 0.0
  end_time        = 1.
  num_steps       = 60000
  dt              = .2
  n_startup_steps = 0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update13.i

# MC update version, with only Compressive with compressive strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Return to the stress_I = stress_II = stress_III ~1 tip

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-2 0 0  0 -1.9 0  0 0 -2.1'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/richards/test/tests/gravity_head_1/gh_fu_12.i

# unsaturated = true
# gravity = true
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = -1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGnone
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh_fu_12
  exodus = true
[]

modules/chemical_reactions/test/tests/jacobian/2species_equilibrium_with_density.i

# Tests the Jacobian when equilibrium secondary species are present including density
# in flux calculation

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./pressure]
    type = RandomIC
    variable = pressure
    max = 5
    min = 1
  [../]
  [./a]
    type = RandomIC
    variable = a
    max = 1
    min = 0
  [../]
  [./b]
    type = RandomIC
    variable = b
    max = 1
    min = 0
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = 'a b'
    reactions = '2a = pa2     2
                 a + b = pab 2'
    secondary_species = 'pa2 pab'
    pressure = pressure
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./a_conv]
    type = PrimaryConvection
    variable = a
    p = pressure
    gravity = '0 -10 0'
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./b_diff]
    type = PrimaryDiffusion
    variable = b
  [../]
  [./b_conv]
    type = PrimaryConvection
    variable = b
    p = pressure
    gravity = '0 -10 0'
  [../]
  [./pressure]
    type = DarcyFluxPressure
    variable = pressure
    gravity = '0 -10 0'
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity density'
    prop_values = '1e-4 1e-4 0.2 10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
[]

[Outputs]
  perf_graph = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

examples/ex04_bcs/trapezoid.i

[Mesh]
  file = trapezoid.e
  uniform_refine = 1
[]

# Polar to Cartesian
# R = sqrt(x^2 + y^2)
# x = R * cos(theta)
# y = R * sin(theta)
[Functions]
  [./tr_x]
    type = ParsedFunction
    value = sqrt(x^2+y^2)*cos(2*pi/3)
  [../]

  [./tr_y]
    type = ParsedFunction
    value = sqrt(x^2+y^2)*sin(2*pi/3)
  [../]

  [./itr_x]
    type = ParsedFunction
    value = sqrt(x^2+y^2)*cos(0)
  [../]

  [./itr_y]
    type = ParsedFunction
    value = sqrt(x^2+y^2)*sin(0)  # Always Zero!
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  # A forcing term near the periodic boundary
  [./forcing]
    type = ExampleGaussContForcing
    variable = u
    x_center = 2
    y_center = -1
    x_spread = 0.25
    y_spread = 0.5
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./x]
      primary = 1
      secondary = 4
      transform_func = 'tr_x tr_y'
      inv_transform_func = 'itr_x itr_y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  num_steps = 6
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/mass05.i

# 2phase (PP)
# vanGenuchten, constant-bulk density for each phase, constant porosity, 3components (that exist in both phases)
# unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp1]
  [../]
  [./massfrac_ph1_sp0]
  [../]
  [./massfrac_ph1_sp1]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph0_sp1]
    type = RandomIC
    variable = massfrac_ph0_sp1
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph1_sp1]
    type = RandomIC
    variable = massfrac_ph1_sp1
    min = 0
    max = 0.4
  [../]
[]

[Kernels]
  [./mass_sp0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./mass_sp1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = ppgas
  [../]
  [./mass_sp2]
    type = PorousFlowMassTimeDerivative
    fluid_component = 2
    variable = massfrac_ph0_sp0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas massfrac_ph0_sp0'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/multiapps/petsc_options/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 1
  l_max_its = 4
  nl_max_its = 2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  petsc_options = '-test'
  l_tol = 1e-12
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub.i
  [../]
[]

modules/tensor_mechanics/test/tests/cp_user_object/fileread.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
  [../]
  [./uy]
  [../]
  [./uz]
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./rotout]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./gss]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./gss]
    type = MaterialStdVectorAux
    variable = gss
    property = state_var_gss
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = tdisp
  [../]
[]

[UserObjects]
  [./slip_rate_gss]
    type = CrystalPlasticitySlipRateGSS
    variable_size = 12
    slip_sys_file_name = input_slip_sys.txt
    num_slip_sys_flowrate_props = 2
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    uo_state_var_name = state_var_gss
  [../]
  [./slip_resistance_gss]
    type = CrystalPlasticitySlipResistanceGSS
    variable_size = 12
    uo_state_var_name = state_var_gss
  [../]
  [./state_var_gss]
    type = CrystalPlasticityStateVariable
    variable_size = 12
    intvar_read_type = file_input
    state_variable_file_name = input_state_variable.txt
    uo_state_var_evol_rate_comp_name = state_var_evol_rate_comp_gss
    scale_factor = 1.0
  [../]
  [./state_var_evol_rate_comp_gss]
    type = CrystalPlasticityStateVarRateComponentGSS
    variable_size = 12
    hprops = '1.0 541.5 109.8 2.5'
    uo_slip_rate_name = slip_rate_gss
    uo_state_var_name = state_var_gss
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainUObasedCP
    stol = 1e-2
    tan_mod_type = exact
    uo_slip_rates = 'slip_rate_gss'
    uo_slip_resistances = 'slip_resistance_gss'
    uo_state_vars = 'state_var_gss'
    uo_state_var_evol_rate_comps = 'state_var_evol_rate_comp_gss'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'ux uy uz'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
  [../]
  [./gss]
    type = ElementAverageValue
    variable = gss
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.05
  num_steps = 10
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

test/tests/time_steppers/iteration_adaptive/hit_function_knot.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmax = 5
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./knot]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 0 0'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 10
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = -1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  start_time = 0.0
  end_time = 2.0
  timestep_tolerance = 0.3
  verbose = true
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.9
    optimal_iterations = 10
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/eff_stress02.i

# 2phase (PS)
# vanGenuchten, constant-bulk density for each phase, constant porosity, 2components (that exist in both phases)
# unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./sgas]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = 0
    max = 1
  [../]
  [./sgas]
    type = RandomIC
    variable = sgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./grad0]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 0
    variable = ppwater
  [../]
  [./grad1]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 1
    variable = sgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
    pc_max = 10
    sat_lr = 0.01
  [../]
[]

[Materials]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/phase_field/test/tests/phase_field_crystal/PFCRFF/PFCRFF_tolerance_test.i

[GlobalParams]
  num_L = 5
  L_name_base = L
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 12
  ny = 12
  xmax = 6
  ymax = 6
[]

[Variables]
  [./PFCRFFVariables]
  [../]
  [./n]
    [./InitialCondition]
      type = RandomIC
      max = 0.8
      min = 0.2
      seed = 12345
    [../]
  [../]
[]

[Kernels]
  [./PFCRFFKernel]
    n_name = n
    log_approach = tolerance
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./PFC]
    type = PFCRFFMaterial
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Preconditioning]
  active = 'SMP'
  [./SMP]
    type = SMP
    full = true
  [../]
  [./FDP]
    type = FDP
    full = true
  [../]
[]

[Executioner]
  # petsc_options = '-snes_mf_operator -ksp_monitor'
  # petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  # petsc_options_value = 'hypre boomeramg 31'
  # petsc_options = '-pc_factor_shift_nonzero '
  # petsc_options_iname = -pc_type
  # petsc_options_value = lu
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         101   preonly   lu      5'
  type = Transient
  num_steps = 1
  dt = 0.1
  l_max_its = 50
  nl_max_its = 20
  solve_type = NEWTON
  l_tol = 1e-04
  nl_rel_tol = 1e-9
  scheme = bdf2
[]

[Outputs]
  exodus = true
[]

[ICs]
  active = ''
  [./density_IC]
    y2 = 10.5
    lc = 6
    y1 = 1.5
    min = .8
    max = .2
    x2 = 10.5
    crystal_structure = FCC
    variable = n
    x1 = 1.5
    type = PFCFreezingIC
  [../]
[]

test/tests/functions/image_function/flip_quad.i

[Mesh]
  uniform_refine = 1
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 20
    ny = 20
    xmax = 2
    ymax = 2
  []
  # Define block IDs for the four quadrants in CCW order:
  # 1=top_right
  # 2=top_left
  # 3=bottom_left
  # 4=bottom_right
  [./top_right_modifier]
    input = gen
    type = SubdomainBoundingBoxGenerator
    top_right = '2 2 0'
    bottom_left = '1 1 0'
    block_id = 1
  [../]
  [./top_left_modifier]
    input = top_right_modifier
    type = SubdomainBoundingBoxGenerator
    top_right = '1 2 0'
    bottom_left = '0 1 0'
    block_id = 2
  [../]
  [./bottom_left_modifier]
    input = top_left_modifier
    type = SubdomainBoundingBoxGenerator
    top_right = '1 1 0'
    bottom_left = '0 0 0'
    block_id = 3
  [../]
  [./bottom_right_modifier]
    input = bottom_left_modifier
    type = SubdomainBoundingBoxGenerator
    top_right = '2 1 0'
    bottom_left = '1 0 0'
    block_id = 4
  [../]
[]

[Variables]
  [./u]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Functions]
  [./bottom_left_func]
    type = ImageFunction
    file_base = stack/test
    flip_x = true
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    file_suffix = png
    origin = '0 0 0'
    dimensions = '1 1 0'
  [../]
  [./top_left_func]
    type = ImageFunction
    file_base = stack/test
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    file_suffix = png
    origin = '0 1 0'
    dimensions = '1 1 0'
    flip_x = true
    flip_y = true
  [../]
  [./top_right_func]
    type = ImageFunction
    origin = '1 1 0'
    file_base = stack/test
    file_suffix = png
    flip_y = true
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    dimensions = '1 1 0'
  [../]
  [./bottom_right_func]
    type = ImageFunction
    origin = '1 0 0'
    file_base = stack/test
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    file_suffix = png
    dimensions = '1 1 0'
  [../]
[]

[ICs]
  # Defined the same way as the MeshGenerators
  [./top_right_ic]
    function = top_right_func
    variable = u
    type = FunctionIC
    block = 1
  [../]
  [./top_left_ic]
    function = top_left_func
    variable = u
    type = FunctionIC
    block = 2
  [../]
  [./bottom_left_ic]
    function = bottom_left_func
    variable = u
    type = FunctionIC
    block = 3
  [../]
  [./bottom_right_ic]
    function = bottom_right_func
    variable = u
    type = FunctionIC
    block = 4
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/static_deformations/beam_cosserat_02_apply_disps.i

# Beam bending.
# Displacements are applied to a beam and stresses and moment-stresses
# are measured.  Note that since these quantities are averaged over
# elements, to get a good agreement with the analytical solution the
# number of elements (nz) should be increased.  Using nx=10
# and nz=10 yields roughly 1% error.
# The displacements applied are a pure-bend around the y axis
# with an additional displacement in the y direction so that
# the result (below) will end up being plane stress (stress_yy=0):
# u_x = Axz
# u_y = Dzy
# u_z = -(A/2)x^2 + (D/2)(z^2-y^2)
# wc_x = -Dy
# wc_y = Ax
# wc_z = 0
# Here A and D are arbitrary constants.
# This results in strains being symmetric, and the only
# nonzero ones are
# ep_xx = Az
# ep_yy = Dz
# ep_zz = Dz
# kappa_xy = -D
# kappa_yx = A
# Then choosing D = -poisson*A gives, for layered Cosserat:
# stress_xx = EAz
# m_yx = (1-poisson^2)*A*B = (1/12)EAh^2 (last equality for joint_shear_stiffness=0)
# where h is the layer thickness.  All other stress and moment-stress
# components are zero.
# The test uses: E=1.2, poisson=0.3, A=1.11E-2, h=2
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  xmax = 10
  ny = 1
  nz = 10
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  # zmin is called back
  # zmax is called front
  # ymin is called bottom
  # ymax is called top
  # xmin is called left
  # xmax is called right
  [./clamp_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'left right top bottom front back'
    function = '-1.11E-2*x*x/2-0.3*(z*z-y*y)/2.0*1.11E-2'
  [../]
  [./clamp_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'left right top bottom front back'
    function = '-0.3*z*y*1.11E-2'
  [../]
  [./clamp_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'left right top bottom front back'
    function = '1.11E-2*x*z'
  [../]
  [./clamp_wc_x]
    type = FunctionDirichletBC
    variable = wc_x
    boundary = 'left right top bottom front back'
    function = '0.3*y*1.11E-2'
  [../]
  [./clamp_wc_y]
    type = FunctionDirichletBC
    variable = wc_y
    boundary = 'left right top bottom front back'
    function = '1.11E-2*x'
  [../]
[]


[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1.2
    poisson = 0.3
    layer_thickness = 2.0
    joint_normal_stiffness = 1E16
    joint_shear_stiffness = 1E-15
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol -sub_pc_factor_shift_type'
    petsc_options_value = 'gmres asm lu 1E-10 1E-14 10 1E-15 1E-10 NONZERO'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = beam_cosserat_02_apply_disps
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/disp01.i

# Test the Jacobian of the dispersive contribution to the diffusive component of
# the PorousFlowDisperiveFlux kernel. By setting disp_long and disp_trans to the same
# non-zero value, and diffusion to zero (by setting tortuosity to zero), the purely
# dispersive component of the flux is zero, and the only flux is due to the contribution
# from disp_trans on the diffusive flux.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
[]

[ICs]
  [./pp]
    type = RandomIC
    variable = pp
    max = 2e1
    min = 1e1
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = pp
    gravity = '1 0 0'
    disp_long = 0.1
    disp_trans = 0.1
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    gravity = '1 0 0'
    disp_long = 0.1
    disp_trans = 0.1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1e7
      density0 = 10
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temp]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1e-2 1e-1'
    tortuosity = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
[]

[Preconditioning]
  active = smp
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_4/cyl4_template2.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl4_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/phase_field/test/tests/anisotropic_mobility/diffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  xmax = 15.0
  ymax = 15.0
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = CrossIC
      x1 = 0.0
      x2 = 30.0
      y1 = 0.0
      y2 = 30.0
    [../]
  [../]
[]

[Kernels]
  [./cres]
    type = MatAnisoDiffusion
    diffusivity = D
    variable = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./D]
    type = ConstantAnisotropicMobility
    tensor = '0.1 0 0
              0   1 0
              0   0 0'
    M_name = D
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31      lu      1'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 50
  nl_rel_tol = 1.0e-10

  dt = 10.0
  num_steps = 2
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

test/tests/transfers/multiapp_vector_pp_transfer/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 1
  ymax = 2
[]

[Problem]
  kernel_coverage_check = false
[]

[Variables]
  [./u]
  [../]
[]

[Postprocessors]
  [./receive]
    type = Receiver
  [../]

  [./send]
    type = ScalePostprocessor
    value = receive
    scaling_factor = 2
  [../]
[]

[Executioner]
  type = Transient
  nl_abs_tol = 1e-10
  num_steps = 1
[]

test/tests/tag/scalar_tag_vector.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 1
  ny = 1
  elem_type = QUAD4
[]

[Variables]
  [./n]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
[]

[AuxVariables]
  [./tag_vector_var1]
    family = SCALAR
    order = FIRST
  [../]
  [./tag_vector_var2]
    family = SCALAR
    order = FIRST
  [../]
  [./tag_matrix_var2]
    family = SCALAR
    order = FIRST
  [../]
[]

[ScalarKernels]
  [./dn]
    type = ODETimeDerivative
    variable = n
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]

  [./ode1]
    type = ParsedODEKernel
    function = '-n'
    variable = n
    extra_matrix_tags = 'mat_tag1'
    extra_vector_tags = 'vec_tag1'
  [../]

  [./ode2]
    type = ParsedODEKernel
    function = '-n'
    variable = n
    vector_tags = 'vec_tag2'
    matrix_tags = 'mat_tag2'
  [../]
[]

[AuxScalarKernels]
  [./TagVectorAux]
    type = ScalarTagVectorAux
    variable = tag_vector_var1
    v = n
    vector_tag  = vec_tag1
    execute_on = timestep_end
  [../]

  [./TagVectorAux2]
    type = ScalarTagVectorAux
    variable = tag_vector_var2
    v = n
    vector_tag  = vec_tag2
    execute_on = timestep_end
  [../]

  [./TagMatrixAux2]
    type = ScalarTagMatrixAux
    variable = tag_matrix_var2
    v = n
    matrix_tag  = mat_tag2
    execute_on = timestep_end
  [../]
[]

[Problem]
  type = TagTestProblem
  test_tag_vectors =  'time nontime residual vec_tag1 vec_tag2'
  test_tag_matrices = 'mat_tag1 mat_tag2'

  extra_tag_matrices = 'mat_tag1 mat_tag2'
  extra_tag_vectors  = 'vec_tag1 vec_tag2'
[]

[Executioner]
  type = Transient
  start_time = 0
  num_steps = 10
  dt = 0.001
  dtmin = 0.001 # Don't allow timestep cutting
  solve_type = NEWTON
  nl_max_its = 2
  nl_abs_tol = 1.e-12 # This is an ODE, so nl_abs_tol makes sense.
[]

[Functions]
  [./exact_solution]
    type = ParsedFunction
    value = exp(t)
  [../]
[]

[Postprocessors]
  [./error_n]
    # Post processor that computes the difference between the computed
    # and exact solutions.  For the exact solution used here, the
    # error at the final time should converge at O(dt^p), where p is
    # the order of the method.
    type = ScalarL2Error
    variable = n
    function = exact_solution
    # final is not currently supported for Postprocessor execute_on...
    # execute_on = 'final'
  [../]
[]

[Outputs]
  csv = true
[]

test/tests/functions/piecewise_multilinear/oneDa.i

# PiecewiseMultilinear function tests in 1D
# See [Functions] block for a description of the tests
# All tests yield variable = 1 everywhere, so they are compared using postprocessors

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 2
  nx = 10
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./end1_var]
  [../]

  [./end2_var]
  [../]

  [./end3_var]
  [../]

  [./end4_var]
  [../]

  [./one_pt1_var]
  [../]

  [./one_pt2_var]
  [../]

  [./one_pt3_var]
  [../]

  [./other_axis1_var]
  [../]

  [./other_axis2_var]
  [../]

  [./other_axis3_var]
  [../]
[]

[AuxKernels]
  [./end1_auxK]
    type = FunctionAux
    variable = end1_var
    function = end1_fcn
  [../]

  [./end2_auxK]
    type = FunctionAux
    variable = end2_var
    function = end2_fcn
  [../]

  [./end3_auxK]
    type = FunctionAux
    variable = end3_var
    function = end3_fcn
  [../]

  [./end4_auxK]
    type = FunctionAux
    variable = end4_var
    function = end4_fcn
  [../]

  [./one_pt1_auxK]
    type = FunctionAux
    variable = one_pt1_var
    function = one_pt1_fcn
  [../]

  [./one_pt2_auxK]
    type = FunctionAux
    variable = one_pt2_var
    function = one_pt2_fcn
  [../]

  [./one_pt3_auxK]
    type = FunctionAux
    variable = one_pt3_var
    function = one_pt3_fcn
  [../]

  [./other_axis1_auxK]
    type = FunctionAux
    variable = other_axis1_var
    function = other_axis1_fcn
  [../]

  [./other_axis2_auxK]
    type = FunctionAux
    variable = other_axis2_var
    function = other_axis2_fcn
  [../]

  [./other_axis3_auxK]
    type = FunctionAux
    variable = other_axis3_var
    function = other_axis3_fcn
  [../]
[]


[Functions]
# The result (which is unity) that all the functions should yield
  [./answer_fcn]
    type = ConstantFunction
    value = 1
  [../]

# Function that is 1 for all x>=0, due to data only being defined on x<0
  [./end1_fcn]
    type = PiecewiseMultilinear
    data_file = end1.txt
  [../]

# Function that is 1 for all x>=0, due to data only being defined on x<=0
  [./end2_fcn]
    type = PiecewiseMultilinear
    data_file = end2.txt
  [../]

# Function that is 1 for all x<=2, due to data only being defined on x>2
  [./end3_fcn]
    type = PiecewiseMultilinear
    data_file = end3.txt
  [../]

# Function that is 1 for all x<=2, due to data only being defined on x>=2
  [./end4_fcn]
    type = PiecewiseMultilinear
    data_file = end4.txt
  [../]

# Function that is 1 for all x, due to only one point being defined on X at x=2
  [./one_pt1_fcn]
    type = PiecewiseMultilinear
    data_file = one_pt1.txt
  [../]

# Function that is 1 for all x, due to only one point being defined on X at x=1
  [./one_pt2_fcn]
    type = PiecewiseMultilinear
    data_file = one_pt2.txt
  [../]

# Function that is 1 for all x, due to only one point being defined on X at x=-1
  [./one_pt3_fcn]
    type = PiecewiseMultilinear
    data_file = one_pt3.txt
  [../]

# Function that is 1 for all x, and data is defined on Y axis only
  [./other_axis1_fcn]
    type = PiecewiseMultilinear
    data_file = other_axis1.txt
  [../]

# Function that is 1 for all x, and data is defined on T axis only for t>=1
  [./other_axis2_fcn]
    type = PiecewiseMultilinear
    data_file = other_axis2.txt
  [../]

# Function that is 1 for all x, and data that is unity and defined on T axis for -1<=t<=1
  [./other_axis3_fcn]
    type = PiecewiseMultilinear
    data_file = other_axis3.txt
  [../]
[]

[Postprocessors]
  [./end1_pp]
    type = NodalL2Error
    function = answer_fcn
    variable = end1_var
  [../]
  [./end2_pp]
    type = NodalL2Error
    function = answer_fcn
    variable = end2_var
  [../]
  [./end3_pp]
    type = NodalL2Error
    function = answer_fcn
    variable = end3_var
  [../]
  [./one_pt1_pp]
    type = NodalL2Error
    function = answer_fcn
    variable = one_pt1_var
  [../]
  [./one_pt2_pp]
    type = NodalL2Error
    function = answer_fcn
    variable = one_pt2_var
  [../]
  [./one_pt3_pp]
    type = NodalL2Error
    function = answer_fcn
    variable = one_pt3_var
  [../]
  [./other_axis1_pp]
    type = NodalL2Error
    function = answer_fcn
    variable = other_axis1_var
  [../]
  [./other_axis2_pp]
    type = NodalL2Error
    function = answer_fcn
    variable = other_axis2_var
  [../]
  [./other_axis3_pp]
    type = NodalL2Error
    function = answer_fcn
    variable = other_axis3_var
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = oneDa
  hide = dummy
  exodus = false
  csv = true
[]

test/tests/multiapps/picard/fully_coupled.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/power_law_creep/power_law_creep_smallstrain.i

# 1x1x1 unit cube with uniform pressure on top face for the case of small strain.
#  This test does not have a solid mechanics analog because there is not an equvialent
#  small strain with rotations strain calculator material in solid mechanics

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_yy creep_strain_xx creep_strain_yy creep_strain_zz elastic_strain_yy'
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./u_top_pull]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    factor = -10.0e6
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'bottom top'
    value = 1000.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e11
    poissons_ratio = 0.3
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'power_law_creep'
    tangent_operator = elastic
  [../]
  [./power_law_creep]
    type = PowerLawCreepStressUpdate
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    temperature = temp
  [../]

  [./thermal]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]
  [./density]
    type = Density
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.0
  num_steps = 10
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/volumetric_deform_grad/volumetric_strain_interface.i

#This test has volumetric deformation gradient as identity
#Test the interface
#Results should match with elasticity
[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '0.01*t'
  [../]
[]

[Materials]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./volumetric_strain]
    type = ComputeVolumetricDeformGrad
    pre_deform_grad_name = deformation_gradient
    volumetric_deform_grad_name = volumetric_deformation_gradient
    post_deform_grad_name = elastic_deformation_gradient
    block = 0
  [../]
  [./elastic_stress]
    type = ComputeDeformGradBasedStress
    deform_grad_name = elastic_deformation_gradient
    elasticity_tensor_name = elasticity_tensor
    stress_name = elastic_stress
    jacobian_name = elastic_jacobian
    block = 0
  [../]
  [./corrected_stress]
    type = VolumeDeformGradCorrectedStress
    pre_stress_name = elastic_stress
    deform_grad_name = volumetric_deformation_gradient
    pre_jacobian_name = elastic_jacobian
    stress_name = stress
    jacobian_name = Jacobian_mult
    block = 0
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '2.8e5 1.2e5 1.2e5 2.8e5 1.2e5 2.8e5 0.8e5 0.8e5 0.8e5'
    fill_method = symmetric9
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.02
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 101'
  dtmax = 10.0
  nl_rel_tol = 1e-10
  dtmin = 0.02
  num_steps = 10
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/jacobian/line_sink02.i

# PorousFlowPolyLineSink with 2-phase, 3-components, with enthalpy, internal_energy, and thermal_conductivity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 2
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph0_sp1]
  [../]
  [./massfrac_ph1_sp0]
  [../]
  [./massfrac_ph1_sp1]
  [../]
  [./temp]
  [../]
[]


[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp ppwater ppgas massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
  [./dummy_outflow]
    type = PorousFlowSumQuantity
  [../]
[]

[ICs]
  [./temp]
    type = RandomIC
    variable = temp
    min = 1
    max = 2
  [../]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp1]
    type = RandomIC
    variable = massfrac_ph0_sp1
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp1]
    type = RandomIC
    variable = massfrac_ph1_sp1
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./dummy_temp]
    type = TimeDerivative
    variable = temp
  [../]
  [./dummy_ppwater]
    type = TimeDerivative
    variable = ppwater
  [../]
  [./dummy_ppgas]
    type = TimeDerivative
    variable = ppgas
  [../]
  [./dummy_m00]
    type = TimeDerivative
    variable = massfrac_ph0_sp0
  [../]
  [./dummy_m01]
    type = TimeDerivative
    variable = massfrac_ph0_sp1
  [../]
  [./dummy_m10]
    type = TimeDerivative
    variable = massfrac_ph1_sp0
  [../]
  [./dummy_m11]
    type = TimeDerivative
    variable = massfrac_ph1_sp1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
      cv = 1.1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1.4
      cv = 1.8
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '0.1 0.2 0.3 0.2 0 0.1 0.3 0.1 0.1'
  [../]
[]

[DiracKernels]
  [./dirac0]
    type = PorousFlowPolyLineSink
    fluid_phase = 0
    variable = ppwater
    point_file = one_point.bh
    line_length = 1
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-0.9 1.5'
    fluxes = '-1.1 2.2'
  [../]
  [./dirac1]
    type = PorousFlowPolyLineSink
    fluid_phase = 1
    variable = ppgas
    line_length = 1
    use_relative_permeability = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '1.1 -2.2'
  [../]
  [./dirac2]
    type = PorousFlowPolyLineSink
    fluid_phase = 0
    variable = massfrac_ph0_sp0
    line_length = 1.3
    use_mobility = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '1.1 -0.2'
  [../]
  [./dirac3]
    type = PorousFlowPolyLineSink
    fluid_phase = 0
    variable = massfrac_ph0_sp1
    line_length = 1.3
    use_enthalpy = true
    mass_fraction_component = 0
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '1.1 -0.2'
  [../]
  [./dirac4]
    type = PorousFlowPolyLineSink
    fluid_phase = 1
    variable = massfrac_ph1_sp0
    function_of = temperature
    line_length = 0.9
    mass_fraction_component = 1
    use_internal_energy = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '1.1 -0.2'
  [../]
  [./dirac5]
    type = PorousFlowPolyLineSink
    fluid_phase = 1
    variable = temp
    line_length = 0.9
    mass_fraction_component = 2
    use_internal_energy = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '1.1 -0.2'
  [../]
  [./dirac6]
    type = PorousFlowPolyLineSink
    fluid_phase = 1
    variable = massfrac_ph0_sp0
    use_mobility = true
    function_of = temperature
    mass_fraction_component = 1
    use_relative_permeability = true
    use_internal_energy = true
    point_file = one_point.bh
    SumQuantityUO = dummy_outflow
    p_or_t_vals = '-1.9 1.5'
    fluxes = '0 -0.2'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  file_base = line_sink02
[]

modules/tensor_mechanics/test/tests/2D_different_planes/gps_jacobian_testing_xz.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = square_xz_plane.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_z]
  [../]
  [./scalar_strain_yy]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./generalized_plane_strain]
    block = 1
    strain = SMALL
    scalar_out_of_plane_strain = scalar_strain_yy
    out_of_plane_direction = y
    planar_formulation = GENERALIZED_PLANE_STRAIN
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.0
    youngs_modulus = 1
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-ksp_type -pc_type -snes_type'
  petsc_options_value = 'bcgs bjacobi test'

  end_time = 1.0
[]

modules/combined/examples/xfem/xfem_mechanics_prescribed_growth.i

# This is a demonstration of a simple mechanics simulation using XFEM
# to represent a single crack that is prescribed to propagate along
# a line over time.

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 11
  ny = 11
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  geometric_cut_userobjects = 'line_seg_cut_uo'
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '1.0  0.5  0.1  0.5'
    time_start_cut = 0.0
    time_end_cut = 8.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    planar_formulation = plane_strain
    add_variables = true
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0  50'
    y='0  0.02'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./topx]
    type = DirichletBC
    boundary = top
    variable = disp_x
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_y
    function = pull
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./_elastic_strain]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-9

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 10.0

  max_xfem_update = 5
[]

[Outputs]
  exodus = true
  execute_on = timestep_end
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/solid_mechanics/test/tests/cracking/cracking_plane_stress.i

################################################################################
#
# 1x1x1 cube, single element
# simulate plane stress
# pull in +y direction on right surface to produce shear strain
#
#
#
#          ____________
#         /|          /|
#        / |  5      / |                       -X  Left   1
#       /__________ /  |                       +X  Right  4
#      |   |    3  |   |                       +Y  Top    5
#      | 1 |       | 4 |                       -Y  Bottom 2
#      |   |_6_____|___|           y           +Z  Front  6
#      |  /        |  /            ^           -Z  Back   3
#      | /    2    | /             |
#      |/__________|/              |
#                                  ----> x
#                                 /
#                                /
#                               z
#
#
#
#################################################################################

[Mesh]
  file = cube.e
  displacements = 'disp_x disp_y disp_z'
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

 []

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./crack_xx_flags]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Functions]
  [./displ]
    type = PiecewiseLinear
    x = '0 0.1 0.2 0.3 0.4'
    y = '0 0.0026 0 -0.0026 0'
  [../]
  [./pressure]
    type = PiecewiseLinear
    x = '0 0.1 0.2 0.3 0.4'
    y = '0 0   0    0   0'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]
  [./crack_xx_flags]
    type = MaterialRealVectorValueAux
    property = crack_flags
    variable = crack_xx_flags
    component = 0
    block = 1
  [../]

  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    tensor = stress
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    variable = stress_zz
    tensor = stress
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    variable = stress_xy
    tensor = stress
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    variable = stress_yz
    tensor = stress
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    variable = stress_zx
    tensor = stress
    index = 5
  [../]

  [./strain_xx]
    type = MaterialTensorAux
    variable = strain_xx
    tensor = total_strain
    index = 0
  [../]

  [./strain_yy]
    type = MaterialTensorAux
    variable = strain_yy
    tensor = total_strain
    index = 1
  [../]

  [./strain_zz]
    type = MaterialTensorAux
    variable = strain_zz
    tensor = total_strain
    index = 2
  [../]

  [./strain_xy]
    type = MaterialTensorAux
    variable = strain_xy
    tensor = total_strain
    index = 3
  [../]

  [./strain_yz]
    type = MaterialTensorAux
    variable = strain_yz
    tensor = total_strain
    index = 4
  [../]

  [./strain_zx]
    type = MaterialTensorAux
    variable = strain_zx
    tensor = total_strain
    index = 5
  [../]

[]


[BCs]
  [./pull_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = displ
  [../]
  [./pin_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1  4'
    value = 0.0
  [../]
  [./pin_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = '3'
    value = 0.0
  [../]
  [./front]
    type = Pressure
    variable = disp_z
    component = 2
    boundary = 6
    function = pressure
    factor   = 1.0
  [../]
[]

[Materials]
  [./fred]
    type = Elastic
    block = 1
    youngs_modulus = 200.0e3
    poissons_ratio = 0.3
    cracking_stress = 120
    cracking_release = exponential
    cracking_residual_stress = 0.1
    cracking_beta = 0.1
    compute_method = ShearRetention
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]

[]
[Postprocessors]
  [./elem_stress_xx]
    type = ElementalVariableValue
    variable = stress_xx
    elementid = 0
  [../]
  [./elem_strain_xx]
    type = ElementalVariableValue
    variable = strain_xx
    elementid = 0
  [../]
  [./elem_stress_yy]
    type = ElementalVariableValue
    variable = stress_yy
    elementid = 0
  [../]
  [./elem_strain_yy]
    type = ElementalVariableValue
    variable = strain_yy
    elementid = 0
  [../]
  [./elem_stress_zz]
    type = ElementalVariableValue
    variable = stress_zz
    elementid = 0
  [../]
  [./elem_strain_zz]
    type = ElementalVariableValue
    variable = strain_zz
    elementid = 0
  [../]
  [./elem_stress_xy]
    type = ElementalVariableValue
    variable = stress_xy
    elementid = 0
  [../]
  [./elem_strain_xy]
    type = ElementalVariableValue
    variable = strain_xy
    elementid = 0
  [../]
  [./elem_stress_yz]
    type = ElementalVariableValue
    variable = stress_yz
    elementid = 0
  [../]
  [./elem_strain_yz]
    type = ElementalVariableValue
    variable = strain_yz
    elementid = 0
  [../]
  [./elem_stress_zx]
    type = ElementalVariableValue
    variable = stress_yz
    elementid = 0
  [../]
  [./elem_strain_zx]
    type = ElementalVariableValue
    variable = strain_yz
    elementid = 0
  [../]
  [./elem_crack_flags]
    type = ElementalVariableValue
    variable = crack_xx_flags
    elementid = 0
  [../]
[]
[Executioner]
  type = Transient
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-ksp_gmres_restart -pc_type -sub_pc_type'
  petsc_options_value = '101                asm      lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-5
  start_time = 0.0
  end_time = 0.4
  dt = 0.04
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    output_linear = true
  [../]
 csv = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/pull_push_h.i

# A column of elements has its bottom pulled down, and then pushed up again.
# Hardening of the tensile strength means that the top element also
# experiences plastic deformation
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 2
  xmin = -10
  xmax = 10
  ymin = -10
  ymax = 10
  zmin = -100
  zmax = 0
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./no_x2]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_y1]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./no_y2]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.0
  [../]

  [./topz]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0
  [../]
  [./bottomz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = back
    function = 'if(t>1,-2.0+t,-t)'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
  [./straint_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xx
    index_i = 0
    index_j = 0
  [../]
  [./straint_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xy
    index_i = 0
    index_j = 1
  [../]
  [./straint_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xz
    index_i = 0
    index_j = 2
  [../]
  [./straint_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yy
    index_i = 1
    index_j = 1
  [../]
  [./straint_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yz
    index_i = 1
    index_j = 2
  [../]
  [./straint_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zz
    index_i = 2
    index_j = 2
  [../]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[UserObjects]
  [./coh_irrelevant]
    type = TensorMechanicsHardeningCubic
    value_0 = 2E6
    value_residual = 1E6
    internal_limit = 0.01
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.5
    value_residual = 0.2
    internal_limit = 0.01
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.166666666667
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 0
    value_residual = 1E8
    internal_limit = 0.1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E8
    value_residual = 0.0
    internal_limit = 0.01
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '6.4E9 6.4E9'  # young 16MPa, Poisson 0.25
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh_irrelevant
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 1000
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-5
    perfect_guess = false
    min_step_size = 0.1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_converged_reason -snes_linesearch_monitor'
    petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
    petsc_options_value = ' asm      2              lu            gmres     200'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason'
  line_search = bt
  nl_abs_tol = 1E-2
  nl_rel_tol = 1e-15
  l_tol = 1E-10

  l_max_its = 100
  nl_max_its = 100
  end_time = 3.0
  dt = 0.1
  type = Transient
[]

[Outputs]
  file_base = pull_push_h
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/check_error/bulk_modulus.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = -1e6
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/tensile/planar7.i

# A single unit element is stretched by (0.5, 0.4, 0.3)E-6m
# with Lame lambda = 0.6E6 and Lame mu (shear) = 1E6
# stress_xx = 1.72 Pa
# stress_yy = 1.52 Pa
# stress_zz = 1.32 Pa
# tensile_strength is set to 1.3Pa
#
# The return should be to the edge (the algorithm will first try the tip) with
# plastic_multiplier0 = 0, plastic_multiplier1 = 5E-8, plastic_multiplier2 = 1.5E-7
# internal = 2E-7
# stress_xx = stress_yy = 1.3
# stress_zz = 1.2

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.5E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.4E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.3E-6*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./hard]
    type = TensorMechanicsHardeningConstant
    value = 1.3
  [../]
  [./tens]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = hard
    shift = 1E-6
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.6E6 1E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = tens
    debug_fspb = none
    debug_jac_at_stress = '1 2 3 2 -4 -5 3 -5 10'
    debug_jac_at_pm = '0.1 0.2 0.3'
    debug_jac_at_intnl = 1E-6
    debug_stress_change = 1E-6
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar7
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/outputs/system_info/system_info_mesh.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Adaptivity]
  marker = marker
  max_h_level = 2
  [./Indicators]
    [./indicator]
      type = GradientJumpIndicator
      variable = u
    [../]
  [../]
  [./Markers]
    [./marker]
      type = ErrorFractionMarker
      coarsen = 0.1
      indicator = indicator
      refine = 0.7
    [../]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux_u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  print_mesh_changed_info = true
[]

modules/richards/test/tests/gravity_head_2/gh_lumped_08.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true
# lumped = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 0.5E-3'
  gravity = '-1 0 0'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-3
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-3
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh_lumped_08
  csv = true
[]

modules/combined/test/tests/reference_residual/group_variables.i

[Mesh]
  file = 2squares.e
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  group_variables = 'disp_x disp_y;
                     scalar_strain_zz1 scalar_strain_zz2'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./scalar_strain_zz1]
    order = FIRST
    family = SCALAR
  [../]
  [./scalar_strain_zz2]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./aux_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_scalar_strain_zz1]
    order = FIRST
    family = SCALAR
  [../]
  [./saved_scalar_strain_zz2]
    order = FIRST
    family = SCALAR
  [../]
[]

[Postprocessors]
  [./react_z1]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    block = 1
  [../]
  [./react_z2]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    block = 2
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./GeneralizedPlaneStrain]
      [./gps1]
        use_displaced_mesh = true
        displacements = 'disp_x disp_y'
        scalar_out_of_plane_strain = scalar_strain_zz1
        block = '1'
      [../]
      [./gps2]
        use_displaced_mesh = true
        displacements = 'disp_x disp_y'
        scalar_out_of_plane_strain = scalar_strain_zz2
        block = '2'
      [../]
    [../]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = false
    displacements = 'disp_x disp_y'
    temperature = temp
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
    block = '1 2'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]

  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./aux_strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = aux_strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[AuxScalarKernels]
  [./saved_scalar_strain_zz1_ref_resid]
    type = GeneralizedPlaneStrainReferenceResidual
    variable = saved_scalar_strain_zz1
    generalized_plane_strain = gps1_GeneralizedPlaneStrainUserObject
  [../]
  [./saved_scalar_strain_zz2_ref_resid]
    type = GeneralizedPlaneStrainReferenceResidual
    variable = saved_scalar_strain_zz2
    generalized_plane_strain = gps2_GeneralizedPlaneStrainUserObject
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottom1x]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottom1y]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
  [./bottom2x]
    type = DirichletBC
    boundary = 2
    variable = disp_x
    value = 0.0
  [../]
  [./bottom2y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    block = '1 2'
  [../]
  [./strain1]
    type = ComputePlaneSmallStrain
    displacements = 'disp_x disp_y'
    scalar_out_of_plane_strain = scalar_strain_zz1
    block = 1
    eigenstrain_names = eigenstrain
  [../]
  [./strain2]
    type = ComputePlaneSmallStrain
    displacements = 'disp_x disp_y'
    scalar_out_of_plane_strain = scalar_strain_zz2
    block = 2
    eigenstrain_names = eigenstrain
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    block = '1 2'
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-10

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/automatic_differentiation/admatreaction.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
[]

[Variables]
  [./u]
    [./InitialCondition]
      type = FunctionIC
      function = cos(x*2*pi)
    [../]
  [../]
  [./v]
    [./InitialCondition]
      type = FunctionIC
      function = sin(x*2*pi)
    [../]
  [../]
[]

[Kernels]
  [./dudt]
    type = ADTimeDerivative
    variable = u
  [../]
  [./dvdt]
    type = ADTimeDerivative
    variable = v
  [../]
  [./u]
    type = ADMatReaction
    variable = u
    #v = v
  [../]
  [./v]
    type = ADMatReaction
    variable = v
  [../]
[]

[Materials]
  [./L]
    type = ADTestDerivativeFunction
    function = F3
    f_name = L
    op = 'u v'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 0.1
  num_steps = 5
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/domain_integral_thermal/j_integral_2d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack2d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*x/504)
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  temperature = temp
  incremental = true
  eigenstrain_names = thermal_expansion
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
    eigenstrain_names = thermal_expansion
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 400
    value = 0.0
  [../]

  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = 900
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 0.0
    thermal_expansion_coeff = 1.35e-5
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 40

  nl_rel_step_tol= 1e-10
  nl_rel_tol = 1e-10

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = j_integral_2d_out
  exodus = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

modules/solid_mechanics/test/tests/interaction_integral/interaction_integral_3d.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = crack3d.e
#  partitioner = centroid
#  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

#  [./pin_x]
#    type = DirichletBC
#    variable = disp_x
#    boundary = 200
#    value = 0.0
#  [../]
#
#  [./pin_y]
#    type = DirichletBC
#    variable = disp_y
#    boundary = 200
#    value = 0.0
#  [../]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

 # [./nocrack_y]
 #   type = DirichletBC
 #   variable = disp_y
 #   boundary = 600
 #   value = 0.0
 # [../]

# [./no_x]
#   type = DirichletBC
#   variable = disp_x
#   boundary = 500
#   value = 0.0
# [../]
# [./no_y]
#   type = DirichletBC
#   variable = disp_y
#   boundary = 500
#   value = 0.0
# [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = interaction_integral_3d_out
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform11.i

# Using CappedMohrCoulomb with compressive failure only
# checking for small deformation
# A single element is stretched by -1E-6m in z direction, and by small amounts in x and y directions
# stress_zz = Youngs Modulus*Strain = -2E6*1E-6 = -2 Pa
# compressive_strength is set to 1Pa
# Then the final stress should return to the yeild surface and the minimum principal stress value should be -1pa.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-0.1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-0.2E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-1E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.0
    yield_function_tol = 1.0E-9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform11
  csv = true
[]

modules/porous_flow/test/tests/chemistry/except13.i

# Exception test.
# Incorrect number of eta exponents

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    reactions = '1 1'
    specific_reactive_surface_area = 1.0
    kinetic_rate_constant = 1.0e-8
    activation_energy = 1.5e4
    molar_volume = 1
    eta_exponent = '1 1'
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking_function.i

#
# Simple pull test for cracking. This tests the option to prescribe the
# cracking strength using an AuxVariable. In this case, an elemental
# AuxVariable is used, and a function is used to prescribe its value.
# One of the elements is weaker than the others, so the crack localizes
# in that element.
#
[Mesh]
   file = plate.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./cracking_stress_fn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./crack_flags2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./displ]
    type = PiecewiseLinear
    x = '0 0.1 0.2 0.3 0.4'
    y = '0 0.001 0 -0.001 0'
  [../]
  [./fstress]
    type = ParsedFunction
    value = 'if(x > 0.667, 1.1e6, 1.2e6)'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx strain_xx strain_yy strain_xy strain_yz'
  [../]
[]

[AuxKernels]
  [./cracking_stress_fn]
    type = FunctionAux
    variable = cracking_stress_fn
    function = fstress
    execute_on = initial
  [../]
  [./crack_flags2]
    type = MaterialRealVectorValueAux
    property = crack_flags
    variable = crack_flags2
   component = 2
  [../]
[]

[BCs]
  [./pull]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '3 4'
    function = displ
  [../]

  [./pin_x]
    type = DirichletBC
    variable = disp_x
    boundary =  '1 2'
    value = 0
  [../]
  [./pin_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 4'
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 200.0e7
    poissons_ratio = 0.0
  [../]
  [./elastic_stress]
    type = ComputeSmearedCrackingStress
    cracking_stress = cracking_stress_fn
    softening_models = abrupt_softening
  [../]
  [./abrupt_softening]
    type = AbruptSoftening
    residual_stress = 0.0
  [../]
[]

[Postprocessors]
  [./elem_stress_xx]
    type = ElementalVariableValue
    variable = stress_xx
    elementid = 2
  [../]
  [./elem_strain_xx]
    type = ElementalVariableValue
    variable = strain_xx
    elementid = 2
  [../]
  [./elem_crack_flags_x]
    type = ElementalVariableValue
    variable = crack_flags2
    elementid = 2
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK

  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101               '

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 0.2
  dt = 0.0025
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/combined/test/tests/glued_contact_constraint/glued_contact_constraint.i

[Mesh]
  type = FileMesh
  file = simplest_contact.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    planar_formulation = PLANE_STRAIN
    strain = SMALL
    add_variables = true
  [../]
[]

[AuxKernels]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 2
    paired_boundary = 3
  [../]
[]

[Constraints]
  [./contact_x]
    type = GluedContactConstraint
    variable = disp_x
    master_variable = disp_x
    component = 0
    slave = 2
    master = 3
    penalty = 1e6
    nodal_area = penetration
    boundary = 2
  [../]
  [./contact_y]
    type = GluedContactConstraint
    variable = disp_y
    master_variable = disp_y
    component = 1
    slave = 2
    master = 3
    penalty = 1e6
    nodal_area = penetration
    boundary = 3
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]
  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'
  line_search = none
  nl_abs_tol = 1e-8
  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  file_base = out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cto20.i

# DruckerPragerHyperbolic

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 0.4
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    smoother = 1
    yield_function_tolerance = 1E-11
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6 5 4  5 7 2  4 2 2'
    eigenstrain_name = ini_stress
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-11
    plastic_models = dp
    tangent_operator = nonlinear
    min_stepsize = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_2/plane2_template1.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane2_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

test/tests/outputs/intervals/output_final.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 6
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = Exodus
    interval = 5
    execute_on = 'final timestep_end'
  [../]
[]

modules/combined/test/tests/simple_contact/simple_contact_rspherical_dirac.i

#
# This is similar to the patch test for 1D spherical elements with the
#   addition of a contact interface.
#
# The 1D mesh is pinned at x=0.  The displacement at the outer node is set to
#   -3e-3*X where X is the x-coordinate of that node.  That gives a strain of
#   -3e-3 for the x, y, and z directions.
#
# Young's modulus is 1e6, and Poisson's ratio is 0.25.  This gives:
#
# Stress xx, yy, zz = E/(1+nu)/(1-2nu)*strain*((1-nu) + nu + nu) = -6000
#

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]
  file = simple_contact_rspherical.e
  construct_side_list_from_node_list = true
[]

[GlobalParams]
  displacements = 'disp_x'
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '-3e-3*x'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz'
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '1 4'
    function = ur
  [../]
[]

[Contact]
  [./fred]
    master = 2
    slave = 3
    system = DiracKernel
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2 3'
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2 3'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-11

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/jacobian_1/jn_lumped_16.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true
# with lumped fluid mass

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsLumpedMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn_lumped_16
  exodus = false
[]

test/tests/misc/initial_solution_copy/solutions_equal.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./initial_func]
    type = ParsedFunction
    value = sin(pi*x)*sin(pi*y)
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./source]
    type = BodyForce
    variable = u
    value = 1
  [../]
[]

[BCs]
  active = 'func_bc'
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./func_bc]
    type = FunctionDirichletBC
    variable = u
    boundary = 'bottom right top left'
    function = initial_func
  [../]
[]

[Postprocessors]
  [./test_pp]
    type = TestCopyInitialSolution
    execute_on = timestep_begin
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[ICs]
  [./initial]
    function = initial_func
    variable = u
    type = FunctionIC
  [../]
[]

test/tests/transfers/multiapp_scalar_to_auxscalar_transfer/from_sub/sub_wrong_order.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./b]
    family = SCALAR
    order = FIFTH
  [../]
[]

[ICs]
  [./ic]
    type = ScalarComponentIC
    variable = b
    values = '1.0 2.0 3.0 4.0 5.0'
  [../]
[]

[Kernels]
  [./diffusion]
    type = Diffusion
    variable = u
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient
[]

[Outputs]
  hide = 'u'
  exodus = true
[]

test/tests/time_integrators/convergence/explicit_convergence.i

[Mesh]
  type = GeneratedMesh
  dim  = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx   = 4
  ny   = 4
  elem_type = QUAD9
[]

[Variables]
  active = 'u'

  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
    implicit = false
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
    implicit = false
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  # We are solving only mass matrices in this problem.  The Jacobi
  # preconditioner is a bit faster than ILU or AMG for this.
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'jacobi'

  start_time = 0.0
  end_time = 0.03125
  dt = 0.00390625

  [./TimeIntegrator]
    type = Heun
  [../]

   # For explicit methods, we use the LINEAR solve type.
   solve_type = 'LINEAR'
   l_tol = 1e-13
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_4/ring4_template2_sm.i

[Mesh]
  file = ring4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/navier_stokes/test/tests/ins/jeffery_hamel/wedge_dirichlet.i

# This input file tests whether we can converge to the semi-analytical
# solution for flow in a 2D wedge.
[GlobalParams]
  gravity = '0 0 0'

  # Params used by the WedgeFunction for computing the exact solution.
  # The value of K is only required for comparing the pressure to the
  # exact solution, and is computed by the associated jeffery_hamel.py
  # script.
  alpha_degrees = 15
  Re = 30
  K = -9.78221333616
  f = f_theta
[]

[Mesh]
  [file]
    type = FileMeshGenerator
    # file = wedge_4x6.e
    file = wedge_8x12.e
    # file = wedge_16x24.e
    # file = wedge_32x48.e
    # file = wedge_64x96.e
  []
  [./corner_node]
    # Pin is on the centerline of the channel on the left-hand side of
    # the domain at r=1.  If you change the domain, you will need to
    # update this pin location for the pressure exact solution to
    # work.
    type = ExtraNodesetGenerator
    new_boundary = pinned_node
    coord = '1 0'
    input = file
  [../]
[]


[Variables]
  [./vel_x]
    order = SECOND
    family = LAGRANGE
  [../]
  [./vel_y]
    order = SECOND
    family = LAGRANGE
  [../]
  [./p]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./mass]
    type = INSMass
    variable = p
    u = vel_x
    v = vel_y
    p = p
  [../]
  [./x_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_x
  [../]
  [./x_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_x
    u = vel_x
    v = vel_y
    p = p
    component = 0
  [../]
  [./y_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_y
  [../]
  [./y_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_y
    u = vel_x
    v = vel_y
    p = p
    component = 1
  [../]
[]

[BCs]
  [./vel_x_no_slip]
    type = DirichletBC
    variable = vel_x
    boundary = 'top_wall bottom_wall'
    value = 0.0
  [../]
  [./vel_y_no_slip]
    type = DirichletBC
    variable = vel_y
    boundary = 'top_wall bottom_wall'
    value = 0.0
  [../]
  [./vel_x_inlet]
    type = FunctionDirichletBC
    variable = vel_x
    boundary = 'inlet outlet'
    function = 'vel_x_exact'
  [../]
  [./vel_y_inlet]
    type = FunctionDirichletBC
    variable = vel_y
    boundary = 'inlet outlet'
    function = 'vel_y_exact'
  [../]
  [./pressure_pin]
    type = DirichletBC
    variable = p
    boundary = 'pinned_node'
    value = 0
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 1
    prop_names = 'rho mu'
    prop_values = '1  1'
  [../]
[]

[Preconditioning]
  [./SMP_PJFNK]
    type = SMP
    full = true
    solve_type = NEWTON
  [../]
[]

[Executioner]
  type = Transient
  dt = 1.e-2
  dtmin = 1.e-2
  num_steps = 5
  petsc_options_iname = '-ksp_gmres_restart -pc_type -sub_pc_type -sub_pc_factor_levels'
  petsc_options_value = '300                bjacobi  ilu          4'
  line_search = none
  nl_rel_tol = 1e-13
  nl_abs_tol = 1e-11
  nl_max_its = 10
  l_tol = 1e-6
  l_max_its = 300
[]

[Outputs]
  exodus = true
[]

[Functions]
  [./f_theta]
    # Non-dimensional solution values f(eta), 0 <= eta <= 1 for
    # alpha=15 deg, Re=30.  Note: this introduces an input file
    # ordering dependency: this Function must appear *before* the two
    # functions below which use it since apparently proper dependency
    # resolution is not done in this scenario.
    type = PiecewiseLinear
    data_file = 'f.csv'
    format = 'columns'
  [../]
  [./vel_x_exact]
    type = WedgeFunction
    var_num = 0
    mu = 1
    rho = 1
  [../]
  [./vel_y_exact]
    type = WedgeFunction
    var_num = 1
    mu = 1
    rho = 1
  [../]
  [./p_exact]
    type = WedgeFunction
    var_num = 2
    mu = 1
    rho = 1
  [../]
[]

[Postprocessors]
  [./vel_x_L2_error]
    type = ElementL2Error
    variable = vel_x
    function = vel_x_exact
    execute_on = 'initial timestep_end'
  [../]
  [./vel_y_L2_error]
    type = ElementL2Error
    variable = vel_y
    function = vel_y_exact
    execute_on = 'initial timestep_end'
  [../]
  [./p_L2_error]
    type = ElementL2Error
    variable = p
    function = p_exact
    execute_on = 'initial timestep_end'
  [../]
[]

modules/xfem/test/tests/corner_nodes_cut/corner_node_cut.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.0 0.5 0.5 0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
  [../]
[]

[BCs]
  [./top_x]
    type = DirichletBC
    boundary = 2
    variable = disp_x
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.1
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# max_xfem_update = 1

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/solid_mechanics/test/tests/j_integral/j_integral_3d_as_2d.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with one element
#through the thickness, and calculates the J-Integrals using options
#to treat it as 2d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = crack_3d_as_2d.e
  displacements = 'disp_x disp_y disp_z'
  partitioner = centroid
  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

#  [./pin_x]
#    type = DirichletBC
#    variable = disp_x
#    boundary = 200
#    value = 0.0
#  [../]
#
#  [./pin_y]
#    type = DirichletBC
#    variable = disp_y
#    boundary = 200
#    value = 0.0
#  [../]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

 # [./nocrack_y]
 #   type = DirichletBC
 #   variable = disp_y
 #   boundary = 600
 #   value = 0.0
 # [../]

# [./no_x]
#   type = DirichletBC
#   variable = disp_x
#   boundary = 500
#   value = 0.0
# [../]
# [./no_y]
#   type = DirichletBC
#   variable = disp_y
#   boundary = 500
#   value = 0.0
# [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = j_integral_3d_as_2d_out
  exodus = true
  csv = true
[]

test/tests/auxkernels/nodal_aux_var/nodal_aux_ts_test.i

#
# Testing nodal aux variables that are computed only at the end of the time step
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 3
  ny = 3
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  active = 'aux1 aux2'

  [./aux1]
    order = FIRST
    family = LAGRANGE
  [../]

  [./aux2]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'ie diff force'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  #Coupling of nonlinear to Aux
  [./force]
    type = CoupledForce
    variable = u
    v = aux2
  [../]
[]

[AuxKernels]
  active = 'constant field'

  #Simple Aux Kernel
  [./constant]
    variable = aux1
    type = ConstantAux
    value = 1
  [../]

  #Shows coupling of Aux to nonlinear
  [./field]
    variable = aux2
    type = CoupledAux
    value = 2
    coupled = u
    execute_on = timestep_end
  [../]
[]

[BCs]
  active = 'left right'

  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  start_time = 0
  dt = 0.1
  num_steps = 2


  solve_type = 'PJFNK'
[]

[Outputs]
  file_base = out_ts
  exodus = true
[]

modules/combined/test/tests/eigenstrain/composite.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[AuxVariables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = x
    [../]
  [../]
  [./s11]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./s22]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./ds11]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./ds22]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./s11]
    type = RankTwoAux
    variable = s11
    rank_two_tensor = eigenstrain
    index_i = 0
    index_j = 0
  [../]
  [./s22]
    type = RankTwoAux
    variable = s22
    rank_two_tensor = eigenstrain
    index_i = 1
    index_j = 1
  [../]
  [./ds11]
    type = RankTwoAux
    variable = ds11
    rank_two_tensor = delastic_strain/dc
    index_i = 0
    index_j = 0
  [../]
  [./ds22]
    type = RankTwoAux
    variable = ds22
    rank_two_tensor = delastic_strain/dc
    index_i = 1
    index_j = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1'
    fill_method = symmetric_isotropic
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y'
    eigenstrain_names = 'eigenstrain'
  [../]
  [./eigen1]
    type = GenericConstantRankTwoTensor
    tensor_values = '1 -1 0 0 0 0'
    tensor_name = eigen1
  [../]
  [./eigen2]
    type = GenericConstantRankTwoTensor
    tensor_values = '-1 1 0 0 0 0'
    tensor_name = eigen2
  [../]
  [./weight1]
    type = DerivativeParsedMaterial
    function = 0.02*c^2
    f_name = weight1
    args = c
  [../]
  [./weight2]
    type = DerivativeParsedMaterial
    function = 0.02*(1-c)^2
    f_name = weight2
    args = c
  [../]

  [./eigenstrain]
    type = CompositeEigenstrain
    tensors = 'eigen1  eigen2'
    weights = 'weight1 weight2'
    args = c
    eigenstrain_name = eigenstrain
  [../]
[]

[BCs]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  exodus = true
  execute_on = final
[]

modules/tensor_mechanics/test/tests/2D_geometries/2D-RZ_finiteStrain_resid.i

# This tests the save_in_disp residual aux-variables for
# ComputeAxisymmetricRZFiniteStrain, which is generated through the use of the
# TensorMechanics MasterAction. The GeneratedMesh is 1x1, rotated via axisym to
# create a cylinder of height 1, radius 1.
#
# PostProcessor force_z plots the force on the top surface of the cylinder.
#
# Displacement of 0.1 is applied to top of cylinder while other surfaces are
# constrained. Plotting force_z vs stress_z will show a slope of 3.14159 (pi),
# consistent with formula for normal stress:
#
# Stress = force / area
#
# where area is A = pi * r^2 for a circle.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    save_in = 'force_r force_z'
  [../]
[]

[AuxVariables]
  [./stress_r]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_r]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./force_r]
    order = FIRST
    family = LAGRANGE
  [../]
  [./force_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./stress_r]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_r
    execute_on = timestep_end
  [../]
  [./strain_r]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 0
    variable = strain_r
    execute_on = timestep_end
  [../]
  [./stress_z]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_z
    execute_on = timestep_end
  [../]
  [./strain_z]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
    variable = strain_z
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./_elastic_strain]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[BCs]
  [./no_disp_r_left]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0.0
  [../]
  [./no_disp_r_right]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.0
  [../]
  [./no_disp_z_bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = top
    function = 't'
  [../]
[]

[Debug]
    show_var_residual_norms = true
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '  201               hypre    boomeramg      10'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

  start_time = 0.0
  end_time = 0.1
  dt = 0.01
[]

[Postprocessors]
  [./strainR]
    type = ElementAverageValue
    variable = strain_r
  [../]
  [./stressR]
    type = ElementAverageValue
    variable = stress_r
  [../]
  [./strainZ]
    type = ElementAverageValue
    variable = strain_z
  [../]
  [./stressZ]
    type = ElementAverageValue
    variable = stress_z
  [../]
  [./force_r]
    type = NodalSum
    variable = force_r
    boundary = top
  [../]
  [./force_z]
    type = NodalSum
    variable = force_z
    boundary = top
  [../]
[]

[Outputs]
  exodus = true
  #csv = true
  print_linear_residuals = false
  perf_graph = true
[]

modules/peridynamics/test/tests/jacobian_check/generalized_planestrain_thermomechanics_smallstrain_NOSPD.i


# NOTE: this jacobian test for the coupled thermomechanical model must use displaced mesh, otherwise the difference for the first step is huge

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
  scalar_out_of_plane_strain = scalar_strain_zz
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
  [../]

  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConductionBPD
    variable = temp
  [../]
[]

[Modules/Peridynamics/Mechanics]
  [./Master]
    [./all]
      formulation = NONORDINARY_STATE
      eigenstrain_names = thermal
    [../]
  [../]
  [./GeneralizedPlaneStrain]
    [./all]
      formulation = NONORDINARY_STATE
      eigenstrain_names = thermal
    [../]
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./strain]
    type = ComputePlaneSmallStrainNOSPD
    eigenstrain_names = thermal
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-5
    stress_free_temperature = 0.5
    eigenstrain_name = thermal
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./thermal_mat]
    type = ThermalConstantHorizonMaterialBPD
    thermal_conductivity = 1.0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

modules/tensor_mechanics/test/tests/tensile/planar4.i

# A single unit element is stretched by 1E-6m in z direction.
# with Lame lambda = 0.6E6 and Lame mu (shear) = 1E6
# stress_zz = 2.6 Pa
# stress_xx = 0.6 Pa
# stress_yy = 0.6 Pa
# tensile_strength is set to 0.5Pa
#
# The return should be to a plane (but the algorithm
# will try tip-return first), with
# stress_zz = 0.5
# plastic multiplier = 2.1/2.6 E-6
# stress_xx = 0.6 - (2.1/2.6*0.6) = 0.115
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.0E-6*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./hard]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tens]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = hard
    shift = 1E-6
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.6E6 1E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = tens
    debug_fspb = none
    debug_jac_at_stress = '1 2 3 2 -4 -5 3 -5 10'
    debug_jac_at_pm = '0.1 0.2 0.3'
    debug_jac_at_intnl = 1E-6
    debug_stress_change = 1E-6
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar4
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/adaptive_timestepping/adapt_tstep_function_force_step_sm.i

# This is a test designed to evaluate the cabability of the
# IterationAdaptiveDT TimeStepper to adjust time step size according to
# a function.  For example, if the power input function for a BISON
# simulation rapidly increases or decreases, the IterationAdaptiveDT
# TimeStepper should take time steps small enough to capture the
# oscillation.

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  order = FIRST
  family = LAGRANGE
  block = 1
[]

[Mesh]
  file = 1hex8_10mm_cube.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./Fiss_Function]
    type = PiecewiseLinear
    data_file = blip.csv
    format = columns
  [../]
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

  [./temp]
    initial_condition = 300.0
  [../]
[]


[AuxVariables]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
  [../]
[]


[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]

  [./heat_source]
     type = HeatSource
     variable = temp
     value = 1.0
     function = Fiss_Function
  [../]
[]


[AuxKernels]
  [./vonmises_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
[]

[BCs]
 [./bottom_temp]
   type = DirichletBC
   variable = temp
   boundary = 1
   value = 300
 [../]
 [./top_bottom_disp_x]
   type = DirichletBC
   variable = disp_x
   boundary = '1'
   value = 0
 [../]
 [./top_bottom_disp_y]
   type = DirichletBC
   variable = disp_y
   boundary = '1'
   value = 0
 [../]
 [./top_bottom_disp_z]
   type = DirichletBC
   variable = disp_z
   boundary = '1'
   value = 0
 [../]
[]

[Materials]
 [./thermal]
    type = HeatConductionMaterial
    temp = temp
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./elastic]
    type = Elastic
    youngs_modulus = 300e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion = 5e-6
    formulation = Nonlinear3D
  [../]

  [./density]
    type = Density
    density = 10963.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  verbose = true
  nl_abs_tol = 1e-10
  start_time = 0.0
  num_steps = 50000

  end_time = 5.1e3
  [./TimeStepper]
    type = IterationAdaptiveDT
    timestep_limiting_function = Fiss_Function
    max_function_change = 3e20
    force_step_every_function_point = true
    dt = 1e2
  [../]
[]

[Postprocessors]
  [./Temperature_of_Block]
    type = ElementAverageValue
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./vonMises]
    type = ElementAverageValue
    variable = vonmises_stress
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/richards/test/tests/rogers_stallybrass_clements/rsc02.i

# RSC test with low-res time and spatial resolution
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 200
  ny = 1
  xmin = 0
  xmax = 10 # x is the depth variable, called zeta in RSC
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '3E-2 5E-1 8E-1'
    x = '0 1 5'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater poil'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 10
    bulk_mod = 2E9
  [../]
  [./DensityOil]
    type = RichardsDensityConstBulk
    dens0 = 20
    bulk_mod = 2E9
  [../]
  [./SeffWater]
    type = RichardsSeff2waterRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
  [./SeffOil]
    type = RichardsSeff2gasRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
  [./RelPerm]
    type = RichardsRelPermMonomial
    simm = 0
    n = 1
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E-2
  [../]
[]


[Variables]
  [./pwater]
  [../]
  [./poil]
  [../]
[]

[ICs]
  [./water_init]
    type = ConstantIC
    variable = pwater
    value = 0
  [../]
  [./oil_init]
    type = ConstantIC
    variable = poil
    value = 15
  [../]
[]

[Kernels]
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstoil]
    type = RichardsMassChange
    variable = poil
  [../]
  [./richardsfoil]
    type = RichardsFlux
    variable = poil
  [../]
[]


[AuxVariables]
  [./SWater]
  [../]
  [./SOil]
  [../]
[]


[AuxKernels]
  [./Seff1VGwater_AuxK]
    type = RichardsSeffAux
    variable = SWater
    seff_UO = SeffWater
    pressure_vars = 'pwater poil'
  [../]
  [./Seff1VGoil_AuxK]
    type = RichardsSeffAux
    variable = SOil
    seff_UO = SeffOil
    pressure_vars = 'pwater poil'
  [../]
[]


[BCs]
# we are pumping water into a system that has virtually incompressible fluids, hence the pressures rise enormously.  this adversely affects convergence because of almost-overflows and precision-loss problems.  The fixed things help keep pressures low and so prevent these awful behaviours.   the movement of the saturation front is the same regardless of the fixed things.
  active = 'recharge fixedoil fixedwater'
  [./recharge]
    type = RichardsPiecewiseLinearSink
    variable = pwater
    boundary = 'left'
    pressures = '-1E10 1E10'
    bare_fluxes = '-1 -1'
    use_mobility = false
    use_relperm = false
  [../]
  [./fixedwater]
    type = DirichletBC
    variable = pwater
    boundary = 'right'
    value = 0
  [../]
  [./fixedoil]
    type = DirichletBC
    variable = poil
    boundary = 'right'
    value = 15
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.25
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityOil'
    relperm_UO = 'RelPerm RelPerm'
    SUPG_UO = 'SUPGstandard SUPGstandard'
    sat_UO = 'Saturation Saturation'
    seff_UO = 'SeffWater SeffOil'
    viscosity = '1E-3 2E-3'
    gravity = '0E-0 0 0'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]


[Outputs]
  file_base = rsc02
  interval = 100000
  execute_on = 'initial timestep_end final'
  exodus = true
[]

modules/tensor_mechanics/test/tests/j2_plasticity/small_deform2.i

# UserObject J2 test
# apply uniform stretch in z direction to give
# trial stress_zz = 7, so sqrt(3*J2) = 7
# with zero Poisson's ratio, this should return to
# stress_zz = 3, stress_xx = 2 = stress_yy
# (note that stress_zz - stress_xx = stress_zz - stress_yy = 1, so sqrt(3*j2) = 1,
#  and that the mean stress remains = 7/3)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '3.5E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./j2]
    type = TensorMechanicsPlasticJ2
    yield_strength = str
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = j2
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/phase_field_fracture/crack2d_iso.i

#This input uses PhaseField-Nonconserved Action to add phase field fracture bulk rate kernels
[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 20
    ny = 10
    ymax = 0.5
  []
  [./noncrack]
    type = BoundingBoxNodeSetGenerator
    new_boundary = noncrack
    bottom_left = '0.5 0 0'
    top_right = '1 0 0'
    input = gen
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Modules]
  [./PhaseField]
    [./Nonconserved]
      [./c]
        free_energy = F
        kappa = kappa_op
        mobility = L
      [../]
    [../]
  [../]
  [./TensorMechanics]
    [./Master]
      [./mech]
        add_variables = true
        strain = SMALL
        additional_generate_output = 'stress_yy'
        save_in = 'resid_x resid_y'
      [../]
    [../]
  [../]
[]

[AuxVariables]
  [./resid_x]
  [../]
  [./resid_y]
  [../]
[]

[Kernels]
  [./solid_x]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_x
    component = 0
    c = c
  [../]
  [./solid_y]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_y
    component = 1
    c = c
  [../]
[]

[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 't'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = noncrack
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value = 0
  [../]
[]

[Materials]
  [./pfbulkmat]
    type = GenericConstantMaterial
    prop_names = 'gc_prop l visco'
    prop_values = '1e-3 0.04 1e-4'
  [../]
  [./define_mobility]
    type = ParsedMaterial
    material_property_names = 'gc_prop visco'
    f_name = L
    function = '1.0/(gc_prop * visco)'
  [../]
  [./define_kappa]
    type = ParsedMaterial
    material_property_names = 'gc_prop l'
    f_name = kappa_op
    function = 'gc_prop * l'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
  [../]
  [./damage_stress]
    type = ComputeLinearElasticPFFractureStress
    c = c
    E_name = 'elastic_energy'
    D_name = 'degradation'
    F_name = 'local_fracture_energy'
    decomposition_type = strain_spectral
  [../]
  [./degradation]
    type = DerivativeParsedMaterial
    f_name = degradation
    args = 'c'
    function = '(1.0-c)^2*(1.0 - eta) + eta'
    constant_names       = 'eta'
    constant_expressions = '0.0'
    derivative_order = 2
  [../]
  [./local_fracture_energy]
    type = DerivativeParsedMaterial
    f_name = local_fracture_energy
    args = 'c'
    material_property_names = 'gc_prop l'
    function = 'c^2 * gc_prop / 2 / l'
    derivative_order = 2
  [../]
  [./fracture_driving_energy]
    type = DerivativeSumMaterial
    args = c
    sum_materials = 'elastic_energy local_fracture_energy'
    derivative_order = 2
    f_name = F
  [../]
[]

[Postprocessors]
  [./resid_x]
    type = NodalSum
    variable = resid_x
    boundary = 2
  [../]
  [./resid_y]
    type = NodalSum
    variable = resid_y
    boundary = 2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_rel_tol = 1e-8
  l_max_its = 10
  nl_max_its = 10

  dt = 1e-4
  dtmin = 1e-4
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

test/tests/kernels/transient_vector_diffusion/transient_vector_diffusion.i

[Mesh]
  [./generator]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 10
  [../]
  [./block1]
    type = SubdomainBoundingBoxGenerator
    input = generator
    bottom_left = '0 0 -1'
    top_right = '1 1 1'
    block_id = 1
  [../]
  [./block2]
    type = SubdomainBoundingBoxGenerator
    input = block1
    bottom_left = '0.33 0.33 -1'
    top_right = '0.67 0.67 1'
    block_id = 2
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE_VEC
  [../]
[]

[ICs]
  [./u]
    type = VectorConstantIC
    variable = u
    x_value = 1
    y_value = 2
    z_value = 3
    block = 2
  [../]
[]

[Kernels]
  [./diff]
    type = VectorDiffusion
    variable = u
  [../]
  [./time]
    type = VectorTimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.01
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/gap_heat_transfer_htonly/gap_heat_transfer_htonly_it_plot_test.i

#
# 1-D Gap Heat Transfer Test without mechanics
#
# This test exercises 1-D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of two element blocks containing one element each.  Each
#   element is a unit cube.  They sit next to one another with a unit between them.
#
# The conductivity of both blocks is set very large to achieve a uniform temperature
#  across each block. The temperature of the far left boundary
#  is ramped from 100 to 200 over one time unit, and then held fixed for an additional
#  time unit.  The temperature of the far right boundary is held fixed at 100.
#
# A simple analytical solution is possible for the heat flux between the blocks:
#
#  Flux = (T_left - T_right) * (gapK/gap_width)
#
# The gap conductivity is specified as 1, thus
#
#  gapK(Tavg) = 1.0*Tavg
#
#
# The heat flux across the gap at time = 2 is then:
#
#  Flux(2) = 100 * (1.0/1.0) = 100
#
# For comparison, see results from the flux post processors
#


[Mesh]
  file = gap_heat_transfer_htonly_test.e
[]

[Functions]

  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '100 200 200'
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 100
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]


[BCs]
  [./temp_far_left]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]

  [./temp_far_right]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[Materials]

  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 100000000.0
  [../]

  [./density]
    type = Density
    block = '1 2'
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'




  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'


  line_search = 'none'


  nl_abs_tol = 1e-5
  nl_rel_tol = 1e-12

  l_tol = 1e-10
  l_max_its = 100

  start_time = 0.0
  dt = 1e-1
  end_time = 2.0
[]

[Postprocessors]

  [./temp_left]
    type = SideAverageValue
    boundary = 2
    variable = temp
  [../]

  [./temp_right]
    type = SideAverageValue
    boundary = 3
    variable = temp
  [../]

  [./flux_left]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
  [../]

  [./flux_right]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
  [../]
[]


[Outputs]
  file_base = out_it_plot
  [./exodus]
    type = Exodus
    execute_on = 'initial timestep_end nonlinear'
    nonlinear_residual_dt_divisor = 100
  [../]
[]

modules/phase_field/test/tests/grain_growth/temperature_gradient.i

#
# This test ensures that a flat grain boundary does not move
# under a temperature gradient using the normal grain growth model
#
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 20
  xmax = 1000
  ymax = 500
  elem_type = QUAD
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Functions]
  [./TGradient]
    type = ParsedFunction
    value = '450 + 0.1*x'
  [../]
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalBoundingBoxIC]
      x1 = 0.0
      x2 = 500.0
      y1 = 0.0
      y2 = 500.0
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  [./T]
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
    variable_mobility = true
    args = 'T'
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
  [./Tgrad]
    type = FunctionAux
    variable = T
    function = TGradient
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = T # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 # m^4/(Js) from Schoenfelder 1997
    Q = 0.23 # Migration energy in eV
    GBenergy = 0.708 # GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./gr0_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr0
    execute_on = 'initial TIMESTEP_END'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 10
  dt = 100.0
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/mortar_tm/2d/frictionless_first/small.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'small'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 'plank block'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/solid_mechanics/test/tests/strain_energy_density/incr_model_elas_plas.i

# Single element test to check the strain energy density calculation

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 2
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -100
  [../]
  [./ramp_disp_y]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 6.8e-6 1.36e-5'
  [../]
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./elastic_strain_xx]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./elastic_strain_zz]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./strain_zz]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0.0
  [../]
  [./top_disp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'top'
    function = ramp_disp_y
  [../]
[]

[Materials]
  [./stiffStuff]
    type = SolidModel
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    youngs_modulus = 30e6
    poissons_ratio = 0.3
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
    constitutive_model = isoplas
  [../]
  [./isoplas]
    type = IsotropicPlasticity
    block = 0
    yield_stress = 1e2
    hardening_constant = 0.0
  [../]
[]

[Executioner]
   type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 3e-7
   nl_rel_tol = 1e-12
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 2
   num_steps = 2
[]

[Postprocessors]
  [./epxx]
    type = ElementalVariableValue
    variable = elastic_strain_xx
    elementid = 0
  [../]
  [./epyy]
    type = ElementalVariableValue
    variable = elastic_strain_yy
    elementid = 0
  [../]
  [./epzz]
    type = ElementalVariableValue
    variable = elastic_strain_zz
    elementid = 0
  [../]
  [./eplxx]
    type = ElementalVariableValue
    variable = plastic_strain_xx
    elementid = 0
  [../]
  [./eplyy]
    type = ElementalVariableValue
    variable = plastic_strain_yy
    elementid = 0
  [../]
  [./eplzz]
    type = ElementalVariableValue
    variable = plastic_strain_zz
    elementid = 0
  [../]
  [./etxx]
    type = ElementalVariableValue
    variable = strain_xx
    elementid = 0
  [../]
  [./etyy]
    type = ElementalVariableValue
    variable = strain_yy
    elementid = 0
  [../]
  [./etzz]
    type = ElementalVariableValue
    variable = strain_zz
    elementid = 0
  [../]
  [./sigxx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./sigyy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigzz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./SED]
    type = ElementAverageValue
    variable = SED
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/solid_mechanics/test/tests/thermal_expansion_function/thermal_expansion_function_const_alpha_test.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function has a constant value,
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# The two models produce very similar results.  There are slight
# differences due to the large deformation treatment.

[Mesh]
  file = 'blocks.e'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./mean_alpha]
    type = Elastic
    block = 1
    youngs_modulus = 1e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion_function = cte_func_mean
    stress_free_temperature = 0.0
    thermal_expansion_reference_temperature = 0.5
    thermal_expansion_function_type = mean
  [../]

  [./inst_alpha]
    type = Elastic
    block = 2
    youngs_modulus = 1e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    thermal_expansion_function_type = instantaneous
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (t - tsf) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 1.0
               2 1.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  file_base = const_alpha_out
  exodus = true
  csv = true
[]

modules/porous_flow/test/tests/chemistry/except19.i

# Exception test
# No initial_mineral_concentrations
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./dummy]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 0.5
  [../]
  [./a]
    initial_condition = 0.5
  [../]
  [./ini_mineral_conc]
    initial_condition = 0.2
  [../]
  [./mineral]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./porosity]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./mineral]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = mineral
  [../]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./dummy]
    type = Diffusion
    variable = dummy
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = dummy
    number_fluid_phases = 1
    number_fluid_components = 2
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
    temperature = 1
  [../]
  [./predis_qp]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = a
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = 2
    reactions = 1
    specific_reactive_surface_area = 0.5
    kinetic_rate_constant = 0.6065306597126334
    activation_energy = 3
    molar_volume = 2
    gas_constant = 6
    reference_temperature = 0.5
  [../]
  [./mineral_conc_qp]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_mineral_conc
  [../]
  [./porosity]
    type = PorousFlowPorosity
    chemical = true
    porosity_zero = 0.6
    reference_chemistry = ini_mineral_conc
  [../]
[]


[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1E-10
  dt = 0.1
  end_time = 0.4
[]

[Postprocessors]
  [./porosity]
    type = PointValue
    point = '0 0 0'
    variable = porosity
  [../]
  [./c]
    type = PointValue
    point = '0 0 0'
    variable = mineral
  [../]
[]
[Outputs]
  csv = true
  perf_graph = true
[]

modules/solid_mechanics/test/tests/j_integral/j_integral_2d_points.i

#This tests the J-Integral evaluation capability.
#This is a 2d plane strain model
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
[]

[Mesh]
  file = crack2d.e
  displacements = 'disp_x disp_y'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  crack_front_points = '0 -10 0'
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = j_integral_2d_points_out
  exodus = true
  csv = true
[]

modules/peridynamics/test/tests/heat_conduction/2D_steady_state_BPD.i

# This test solves a 2D steady state heat equation
# The error is found by comparing to the analytical solution

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 10
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./temp]
  [../]
[]

[AuxVariables]
  [./bond_status]
    order = CONSTANT
    family = MONOMIAL
    initial_condition = 1
  [../]
[]

[Functions]
  [./analytical_sol]
    type = ParsedFunction
    value = 'x*x+y*y'
  [../]
[]

[Kernels]
  [./heat_conduction]
    type = HeatConductionBPD
    variable = temp
  [../]
  [./heat_source]
    type = HeatSourceBPD
    variable = temp
    power_density = -4
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = temp
    boundary = 1003
    function = analytical_sol
  [../]
  [./bottom]
    type = FunctionDirichletBC
    variable = temp
    boundary = 1000
    function = analytical_sol
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = temp
    boundary = 1001
    function = analytical_sol
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = temp
    boundary = 1002
    function = analytical_sol
  [../]
[]

[Materials]
  [./thermal_mat]
    type = ThermalConstantHorizonMaterialBPD
    temperature = temp
    thermal_conductivity = 1
  [../]
[]

[Postprocessors]
  [./nodal_error]
    type = NodalL2Error
    function = 'analytical_sol'
    variable = temp
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  file_base = 2D_steady_state_BPD
[]

modules/functional_expansion_tools/examples/2D_volumetric_Cartesian/sub.i

# Basic example coupling a master and sub app in a 2D Cartesian volume.
#
# The master app provides field values to the sub app via Functional Expansions, which then performs
# its calculations. The sub app's solution field values are then transferred back to the master app
# and coupled into the solution of the master app solution.
#
# This example couples Functional Expansions via AuxVariable.
[Mesh]
  type = GeneratedMesh
  dim = 2

  xmin = 0.0
  xmax = 10.0
  nx = 15

  ymin = 1.0
  ymax = 11.0
  ny = 25
[]

# Non-copy transfers only work with AuxVariable, but nothing will be solved without a variable
# defined. The solution is to define an empty variable tha does nothing, but causes MOOSE to solve
# the AuxKernels that we need.
[Variables]
  [./empty]
  [../]
[]

[AuxVariables]
  [./s]
    order = FIRST
    family = LAGRANGE
  [../]
  [./m_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

# We must have a kernel for every variable, hence this null kernel to match the variable 'empty'
[Kernels]
  [./null_kernel]
    type = NullKernel
    variable = empty
  [../]
[]

[AuxKernels]
  [./reconstruct_m_in]
    type = FunctionSeriesToAux
    function = FX_Basis_Value_Sub
    variable = m_in
  [../]
  [./calculate_s] # Something to make 's' change each time, but allow a converging solution
    type = ParsedAux
    variable = s
    args = m_in
    function = '2*exp(-m_in/0.8)'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3   4'
    physical_bounds = '0.0  10.0    1.0 11.0'
    x = Legendre
    y = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Sub
    variable = s
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

modules/xfem/test/tests/solid_mechanics_basic/square_branch_quad_2d.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[UserObjects]
  [./line_seg_cut_uo0]
    type = LineSegmentCutUserObject
    cut_data = '-1.0000e-10   6.6340e-01   6.6340e-01  -1.0000e-10'
    time_start_cut = 0.0
    time_end_cut = 1.0
  [../]
  [./line_seg_cut_uo1]
    type = LineSegmentCutUserObject
    cut_data = '3.3120e-01   3.3200e-01   1.0001e+00   3.3200e-01'
    time_start_cut = 1.0
    time_end_cut = 2.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    planar_formulation = PLANE_STRAIN
    add_variables = true
  [../]
[]

[Functions]
  [./right_disp_x]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
  [./top_disp_y]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionDirichletBC
    boundary = 1
    variable = disp_x
    function = right_disp_x
  [../]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = top_disp_y
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.2
  num_steps = 5000
[]

[Outputs]
  file_base = square_branch_quad_2d_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/examples/flow_through_fractured_media/fine_thick_fracture_transient.i

# Using a single-dimensional mesh
# Transient flow and solute transport along a fracture in a porous matrix
# advective dominated flow in the fracture and diffusion into the porous matrix
#
# Note that fine_thick_fracture_steady.i must be run to initialise the porepressure properly

[Mesh]
  file = 'gold/fine_thick_fracture_steady_out.e'
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pp]
    initial_from_file_var = pp
    initial_from_file_timestep = 1
  [../]
  [./massfrac0]
  [../]
[]

[AuxVariables]
  [./velocity_x]
    family = MONOMIAL
    order = CONSTANT
    block = fracture
  [../]
  [./velocity_y]
    family = MONOMIAL
    order = CONSTANT
    block = fracture
  [../]
[]

[AuxKernels]
  [./velocity_x]
    type = PorousFlowDarcyVelocityComponent
    variable = velocity_x
    component = x
  [../]
  [./velocity_y]
    type = PorousFlowDarcyVelocityComponent
    variable = velocity_y
    component = y
  [../]
[]

[ICs]
  [./massfrac0]
    type = ConstantIC
    variable = massfrac0
    value = 0
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    value = 0
    variable = massfrac0
    boundary = top
  [../]
  [./bottom]
    type = DirichletBC
    value = 1
    variable = massfrac0
    boundary = bottom
  [../]
  [./ptop]
    type = DirichletBC
    variable = pp
    boundary =  top
    value = 1e6
  [../]
  [./pbottom]
    type = DirichletBC
    variable = pp
    boundary = bottom
    value = 1.002e6
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
  [../]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = pp
    disp_trans = 0
    disp_long = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = massfrac0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = massfrac0
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    disp_trans = 0
    disp_long = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = massfrac0
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro_fracture]
    type = PorousFlowPorosityConst
    porosity = 1.0    # this is the true porosity of the fracture
    block = 'fracture'
  [../]
  [./poro_matrix]
    type = PorousFlowPorosityConst
    porosity = 0.1
    block = 'matrix1 matrix2'
  [../]
  [./diff1]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1e-9 1e-9'
    tortuosity = 1.0
    block = 'fracture'
  [../]
  [./diff2]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1e-9 1e-9'
    tortuosity = 0.1
    block = 'matrix1 matrix2'
  [../]
  [./relp]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./permeability1]
    type = PorousFlowPermeabilityConst
    permeability = '3e-8 0 0 0 3e-8 0 0 0 3e-8' # this is the true permeability of the fracture
    block = 'fracture'
  [../]
  [./permeability2]
    type = PorousFlowPermeabilityConst
    permeability = '1e-20 0 0 0 1e-20 0 0 0 1e-20'
    block = 'matrix1 matrix2'
  [../]
[]

[Functions]
  [./dt_controller]
     type = PiecewiseConstant
     x = '0    30   40 100 200 83200'
     y = '0.01 0.1  1  10  100 32'
  [../]
[]

[Preconditioning]
  active = basic
  [./mumps_is_best_for_parallel_jobs]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
  [./basic]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2             '
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 86400
  #dt = 0.01

  [./TimeStepper]
    type = FunctionDT
    function = dt_controller
  [../]

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-9
[]


[VectorPostprocessors]
  [./xmass]
    type = LineValueSampler
    start_point = '0.4 0 0'
    end_point = '0.5 0 0'
    sort_by = x
    num_points = 167
    variable = massfrac0
  [../]
[]

[Outputs]
  perf_graph = true
  console = true
  csv = true
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/LinearStrainHardening/LinearStrainHardeningRestart2.i

#

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = LinearStrainHardening_test.e
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_mag]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t/5.0
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]

  [./plastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]

  [./plastic_strain_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]

  [./plastic_strain_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]

  [./plastic_strain_mag]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = plastic_strain_mag
  [../]

 []


[BCs]

  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

[]


[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'isoplas'
    block = '1'
  [../]
  [./isoplas]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 2.4e2
    hardening_constant = 1206
    relative_tolerance = 1e-25
    absolute_tolerance = 1e-5
  [../]
[]



[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
  start_time = 6e-3
  end_time = 0.0105
#  num_steps = 100
  dt = 1.5e-3
[]

[Outputs]
  exodus = true
  csv = true
[]

[Problem]
  restart_file_base = LinearStrainHardeningRestart1_out_cp/0004
[]

modules/porous_flow/examples/tutorial/06_KT.i

# Darcy flow with a tracer
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
    input = annular
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer_concentration]
  [../]
[]

[ICs]
  [./tracer_concentration]
    type = FunctionIC
    function = '0.5*if(x*x+y*y<1.01,1,0)'
    variable = tracer_concentration
  [../]
[]

[PorousFlowFullySaturated]
  porepressure = porepressure
  coupling_type = Hydro
  gravity = '0 0 0'
  fp = the_simple_fluid
  mass_fraction_vars = tracer_concentration
  stabilization = KT
  flux_limiter_type = superbee
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1E6
    boundary = injection_area
  [../]
  [./constant_outer_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = rmax
  [../]
  [./injected_tracer]
    type = DirichletBC
    variable = tracer_concentration
    value = 0.5
    boundary = injection_area
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      viscosity = 1.0E-3
      density0 = 1000.0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1E-14 0 0   0 1E-14 0   0 0 1E-14'
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityConst
    block = caps
    permeability = '1E-15 0 0   0 1E-15 0   0 0 1E-16'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E5
  nl_rel_tol = 1E-14
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/poro_elasticity/terzaghi_basicthm.i

# Using a BasicTHM action
# Terzaghi's problem of consolodation of a drained medium
# The FullySaturated Kernels are used, with multiply_by_density = false
# so that this becomes a linear problem with constant Biot Modulus
# Also, since the FullySaturated Kernels are used, we have to
# use consistent_with_displaced_mesh = false in the calculation of volumetric strain
#
# A saturated soil sample sits in a bath of water.
# It is constrained on its sides, and bottom.
# Its sides and bottom are also impermeable.
# Initially it is unstressed.
# A normal stress, q, is applied to the soil's top.
# The soil then slowly compresses as water is squeezed
# out from the sample from its top (the top BC for
# the porepressure is porepressure = 0).
#
# See, for example.  Section 2.2 of the online manuscript
# Arnold Verruijt "Theory and Problems of Poroelasticity" Delft University of Technology 2013
# but note that the "sigma" in that paper is the negative
# of the stress in TensorMechanics
#
# Here are the problem's parameters, and their values:
# Soil height.  h = 10
# Soil's Lame lambda.  la = 2
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = 3
# Soil bulk modulus.  K = la + 2*mu/3 = 4
# Soil confined compressibility.  m = 1/(K + 4mu/3) = 0.125
# Soil bulk compliance.  1/K = 0.25
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Soil initial storativity, which is the reciprocal of the initial Biot modulus.  S = phi0/Kf + (alpha - phi0)(1 - alpha)/K = 0.0625
# Consolidation coefficient.  c = k/(S + alpha^2 m) = 13.95348837
# Normal stress on top.  q = 1
# Initial porepressure, resulting from instantaneous application of q, assuming corresponding instantaneous increase of porepressure (Note that this is calculated by MOOSE: we only need it for the analytical solution).  p0 = alpha*m*q/(S + alpha^2 m) = 0.69767442
# Initial vertical displacement (down is positive), resulting from instantaneous application of q (Note this is calculated by MOOSE: we only need it for the analytical solution).  uz0 = q*m*h*S/(S + alpha^2 m)
# Final vertical displacement (down in positive) (Note this is calculated by MOOSE: we only need it for the analytical solution).  uzinf = q*m*h
#
# The solution for porepressure is
# P = 4*p0/\pi \sum_{k=1}^{\infty} \frac{(-1)^{k-1}}{2k-1} \cos ((2k-1)\pi z/(2h)) \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))
# This series converges very slowly for ct/h^2 small, so in that domain
# P = p0 erf( (1-(z/h))/(2 \sqrt(ct/h^2)) )
#
# The degree of consolidation is defined as
# U = (uz - uz0)/(uzinf - uz0)
# where uz0 and uzinf are defined above, and
# uz = the vertical displacement of the top (down is positive)
# U = 1 - (8/\pi^2)\sum_{k=1}^{\infty} \frac{1}{(2k-1)^2} \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = 0
  zmax = 10
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./basefixed]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  [../]
  [./topdrained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = front
  [../]
  [./topload]
    type = NeumannBC
    variable = disp_z
    value = -1
    boundary = front
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.0
      bulk_modulus = 8.0
      viscosity = 0.96
      density0 = 1.0
    [../]
  [../]
[]

[PorousFlowBasicTHM]
  coupling_type = HydroMechanical
  displacements = 'disp_x disp_y disp_z'
  multiply_by_density = false
  porepressure = porepressure
  biot_coefficient = 0.6
  gravity = '0 0 0'
  fp = the_simple_fluid
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '2 3'
    # bulk modulus is lambda + 2*mu/3 = 2 + 2*3/3 = 4
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # only the initial value of this is used
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.6
    fluid_bulk_modulus = 8
    solid_bulk_compliance = 0.25
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p1]
    type = PointValue
    outputs = csv
    point = '0 0 1'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p2]
    type = PointValue
    outputs = csv
    point = '0 0 2'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p3]
    type = PointValue
    outputs = csv
    point = '0 0 3'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p4]
    type = PointValue
    outputs = csv
    point = '0 0 4'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p5]
    type = PointValue
    outputs = csv
    point = '0 0 5'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p6]
    type = PointValue
    outputs = csv
    point = '0 0 6'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p7]
    type = PointValue
    outputs = csv
    point = '0 0 7'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p8]
    type = PointValue
    outputs = csv
    point = '0 0 8'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p9]
    type = PointValue
    outputs = csv
    point = '0 0 9'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p99]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = disp_z
    use_displaced_mesh = false
  [../]
  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.5*t<0.1,0.5*t,0.1)
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.0001
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = terzaghi_basicthm
  [./csv]
    type = CSV
  [../]
[]

test/tests/outputs/oversample/over_sampling_test_gen.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 3
  ny = 3
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = -4+(x*x+y*y)
  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = THIRD
    family = HERMITE
  [../]
[]

[Kernels]
  active = 'ie diff ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.2
  start_time = 0
  num_steps = 5
[]

[Outputs]
  file_base = out_gen
  exodus = true
  [./oversampling]
    file_base = out_gen_oversample
    type = Exodus
    refinements = 3
  [../]
[]

modules/richards/test/tests/gravity_head_1/gh20.i

# investigating validity of immobile saturation
# 5 elements, no SUPG

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 5
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1 10 100 1000 10000'
    x = '0 10 100 1000 10000'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.3
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -1.0
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGnone
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E0
  end_time = 1E5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = gh20
  execute_on = 'timestep_end final'
  interval = 10000
  exodus = true
[]

modules/combined/test/tests/mortar_tm/2drz/frictionless_first/finite_noaction.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_noaction'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]

  [./slave]
    input = block_sidesets
    type = LowerDBlockFromSidesetGenerator
    sidesets = 'block_left'
    new_block_id = '30'
    new_block_name = 'frictionless_slave_subdomain'
  [../]
  [./master]
    input = slave
    type = LowerDBlockFromSidesetGenerator
    sidesets = 'plank_right'
    new_block_id = '20'
    new_block_name = 'frictionless_master_subdomain'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./frictionless_normal_lm]
    order = ${order}
    block = 'frictionless_slave_subdomain'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
  [../]
  [./plank]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
  [../]
[]

[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = block_left
    master = plank_right
    variable = frictionless_normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = min
    use_displaced_mesh = true
  [../]
  [./normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = plank_right
    slave_boundary = block_left
    master_subdomain = frictionless_master_subdomain
    slave_subdomain = frictionless_slave_subdomain
    variable = frictionless_normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  [../]
  [./normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = plank_right
    slave_boundary = block_left
    master_subdomain = frictionless_master_subdomain
    slave_subdomain = frictionless_slave_subdomain
    variable = frictionless_normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/solid_mechanics/test/tests/combined_creep_plasticity/combined_stress_prescribed_sm.i

#
# 1x1x1 unit cube with time-varying pressure on top face
#
# The problem is a one-dimensional creep analysis.  The top face has a
#    pressure load that is a function of time.  The creep strain can be
#    calculated analytically.  There is no practical active linear
#    isotropic plasticity because the yield stress for the plasticity
#    model is set to 1e30 MPa, which will not be reached in this
#    regression test.
#
# The analytic solution to this problem is:
#
#    d ec
#    ---- = a*S^b  with S = c*t^d
#     dt
#
#    d ec = a*c^b*t^(b*d) dt
#
#         a*c^b
#    ec = ----- t^(b*d+1)
#         b*d+1
#
#    where S  = stress
#          ec = creep strain
#          t  = time
#          a  = constant
#          b  = constant
#          c  = constant
#          d  = constant
#
# With a = 3e-24,
#      b = 4,
#      c = 1,
#      d = 1/2, and
#      t = 32400
#   we have
#
#   S = t^(1/2) = 180
#
#   ec = 1e-24*t^3 = 3.4012224e-11
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  displacements = 'disp_x disp_y disp_z'
[]

[GlobalParams]
  volumetric_locking_correction = true
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./pressure]
    type = ParsedFunction
    value = 'sqrt(t)'
  [../]

  [./dts]
    type = PiecewiseLinear
    y = '1e-2 1e-1 1e0 1e1 1e2'
    x = '0    7e-1 7e0 7e1 1e2'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]

  [./creep_strain_yy]
    type = MaterialTensorAux
    variable = creep_strain_yy
    tensor = creep_strain
    index = 1
  [../]
[]


[BCs]
  [./top_pressure]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    function = pressure
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./creep_plas]
    type = PLC_LSH
    block = 0
    youngs_modulus = 2.8e7
    poissons_ratio = 0.3
    coefficient = 3.0e-24
    n_exponent = 4
    m_exponent = 0
    activation_energy = 0
    formulation = Nonlinear3D
    hardening_constant = 1
    yield_stress = 1e30
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = ' lu       superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-7
  l_tol = 1e-8
  start_time = 0.0
  end_time = 32400
  dt = 1e-2
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Postprocessors]
  [./timestep]
    type = TimestepSize
  [../]
[]

[Outputs]
  file_base = combined_stress_prescribed_out
  exodus = true
[]

modules/porous_flow/test/tests/gravity/grav02g.i

# Checking that gravity head is established in the transient situation when 0<=saturation<=1 (note the less-than-or-equal-to).
# 2phase (PS), 2components, Brooks-Corey capillary pressure, constant fluid bulk-moduli for each phase, constant viscosity,
# constant permeability, Brooks-Corey relative permeabilities with residual saturation

[Mesh]
  type = GeneratedMesh
  dim = 2
  ny = 10
  ymax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 -10 0'
[]

[Variables]
  [./ppwater]
    initial_condition = 1.5e6
  [../]
  [./sgas]
    initial_condition = 0.3
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
  [./ppgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./swater]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./relpermwater]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./relpermgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = sgas
  [../]
[]

[AuxKernels]
  [./ppgas]
    type = PorousFlowPropertyAux
    property = pressure
    phase = 1
    variable = ppgas
  [../]
  [./swater]
    type = PorousFlowPropertyAux
    property = saturation
    phase = 0
    variable = swater
  [../]
  [./relpermwater]
    type = MaterialStdVectorAux
    property = PorousFlow_relative_permeability_qp
    index = 0
    variable = relpermwater
  [../]
  [./relpermgas]
    type = PorousFlowPropertyAux
    property = relperm
    phase = 1
    variable = relpermgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureBC
    lambda = 2
    pe = 1e4
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      viscosity = 1e-3
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 10
      viscosity = 1e-5
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-11 0 0 0 1e-11 0  0 0 1e-11'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityBC
    lambda = 2
    phase = 0
    s_res = 0.25
    sum_s_res = 0.35
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityBC
    lambda = 2
    phase = 1
    s_res = 0.1
    sum_s_res = 0.35
    nw_phase = true
  [../]
[]

[Postprocessors]
  [./mass_ph0]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./mass_ph1]
    type = PorousFlowFluidMass
    fluid_component = 1
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_stol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-13 15'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1e5
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 5e3
  [../]
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = grav02g
  exodus = true
  perf_graph = true
  csv = false
[]

modules/combined/test/tests/j2_plasticity_vs_LSH/necking/LSH_necking.i

#

[Mesh]
  file = necking_quad4.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
#    save_in_disp_x = force_x
    save_in_disp_y = force_y
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
#  [./force_x]
#    order = FIRST
#    family = LAGRANGE
#  [../]
  [./force_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xx
    index = 0
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_yy
    index = 1
  [../]
 []

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./y_top]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 't/5'
  [../]
[]

[Materials]
  [./constant]
    type = LinearStrainHardening
    block = 1
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
    yield_stress = 2.4e2
    hardening_constant = 0
    relative_tolerance = 1e-9
    absolute_tolerance = 1e-25
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[Executioner]
  end_time = 0.2
  dt = 0.005
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]
  [./disp_y]
    type = NodalSum
    variable = disp_y
    boundary = top
  [../]
  [./force_y]
    type = NodalSum
    variable = force_y
    boundary = top
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  print_linear_residuals = false
  perf_graph = true
[]

modules/porous_flow/test/tests/numerical_diffusion/framework.i

# Using framework objects: no mass lumping or upwinding
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[Variables]
  [./tracer]
  [../]
[]

[ICs]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass_dot]
    type = TimeDerivative
    variable = tracer
  [../]
  [./flux]
    type = ConservativeAdvection
    velocity = '0.1 0 0'
    variable = tracer
  [../]
[]

[BCs]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_tracer]
    # Ideally, an OutflowBC would be used, but that does not exist in the framework
    # In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = right
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 101
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-1
  nl_abs_tol = 1E-8
  timestep_tolerance = 1E-3
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/combined/test/tests/heat_convection/heat_convection_rz_test.i

# Test cases for convective boundary conditions. TKLarson, 11/01/11, rev. 0.
# Input file for htc_2dtest1

# TKLarson
# 11/01/11
# Revision 0
#
# Goals of this test are:
#  1) show that expected results ensue from application of convective boundary conditions
# Convective boundary condition:
#  q = h*A*(Tw - Tf)
#  where
#    q - heat transfer rate (w)
#    h - heat transfer coefficient (w/m^2-K)
#    A - surface area (m^2)
#    Tw - surface temperature (K)
#    Tf - fluid temperature adjacent to the surface (K)
# The heat transfer coefficient (h) is input as a variable called 'rate'
# Tf is a two valued function specified by 'initial' and 'final' along with a variable
#  called 'duration,' the length of time in seconds that it takes initial to linearly ramp
#  to 'final.'

# The mesh for this test case is based on an ASTM standard for the so-called Brazillian Cylinder test
# (ASTM International, Standard Test Method for Splitting Tensile Strength of Cylindrical Concrete
# Specimens, C 496/C 496M-04, 2004) (because I already had a version of the model).  While the
# Brazillian Cylinder test is for dynamic tensile testing of concrete, the model works for the present
# purposes.  The model is 2-d RZ coordinates.
#
# Brazillian Cylinder sample dimensions:
#       L = 20.3 cm, 0.203 m, (8 in)
#       r = 5.08 cm, 0.0508 m, (2 in)

# Material properties are:
#   density = 2405.28 km/m^3
#   specific heat = 826.4 J/kg-K
#   thermal conductivity 1.937 w/m-K
#  alpha (thermal conductivity/(density*specific heat) is then 9.74e-7 m^2/s
#
# Initial cylinder temperature is room temperature 294.26 K (70 F)
# The initial fluid temperature is room temperature. We will ramp it to 477.6 K (400 F) in 10 minutes.
# We will use a natural convection h (284 w/m^2-K (50 BTU/hr-ft^2-F)) on all faces of the cylinder.
# This is akin to putting the cylinder in an oven (nonconvection type) and turning the oven on.

# What we expect for this problem:
#  1) Use of h = 284 should cause the cylinder to slowly warm up
#  2) The fluid temperature should rise from initial (294 K) to final (477 K) in 600 s.
#  3) 1) and 2) should cause the cylinder to become soaked at 477.6 K after sufficient time(i.e. ~ 1/2 hr).
# This is a simple thermal soak problem.

[Problem]
  coord_type = RZ
[]

[Mesh]    # Mesh Start
# 10cm x 20cm cylinder not so detailed mesh, 2 radial, 6 axial nodes
# Only one block (Block 1), all concrete
# Sideset 1 - top of cylinder, Sideset 2 - length of cylinder, Sideset 3 - bottom of cylinder
  file = heat_convection_rz_mesh.e
[]    # Mesh END

[Variables]  # Variables Start
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 294.26 # Initial cylinder temperature
  [../]

[]    # Variables END


[Kernels]  # Kernels Start
  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]

[]    # Kernels END


[BCs]    # Boundary Conditions Start
# Heat transfer coefficient on outer cylinder radius and ends
  [./convective_clad_surface]    # Convective Start
         type = ConvectiveFluxBC  # Convective flux, e.g. q'' = h*(Tw - Tf)
         boundary = '1 2 3'    # BC applied on top, along length, and bottom
         variable = temp
   rate = 284.      # (w/m^2-K)[50 BTU/hr/-ft^2-F]
          # the above h is a reasonable natural convection value
         initial = 294.26    # initial ambient (lab or oven) temperature (K)
         final = 477.6      # final ambient (lab or oven) temperature (K)
   duration = 600.    # length of time in seconds that it takes the ambient
          #   temperature to ramp from initial to final
  [../]          # Convective End

[]    # BCs END

[Materials]    # Materials Start
  [./thermal]
    type = HeatConductionMaterial
    block = 1
    specific_heat = 826.4
#    thermal_conductivity = 1.937  # this makes alpha 9.74e-7 m^2/s
#    thermal_conductivity = 19.37  # this makes alpha 9.74e-6 m^2/s
          # thermal conductivity arbitrarily increased by a decade to
          #    make the cylinder thermally soak faster (only for the purposes
          #    of this test problem
    thermal_conductivity = 193.7  # this makes alpha 9.74e-5 m^2/s
          # thermal conductivity arbitrarily increased by 2 decade to
          #    make the cylinder thermally soak faster (only for the purposes
          #    of this test problem

  [../]
  [./density]
    type = Density
    block = 1
    density = 2405.28
  [../]

[]      # Materials END

[Executioner]    # Executioner Start
   type = Transient
#   type = Steady

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


   petsc_options = '-snes_ksp_ew '
   petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type'
   petsc_options_value = '70 hypre boomeramg'
   l_max_its = 60
   nl_rel_tol = 1e-8
   nl_abs_tol = 1e-10
   l_tol = 1e-5

   start_time = 0.0
  dt = 60.
  num_steps = 20  # Total run time 1200 s

[]      # Executioner END

[Outputs]    # Output Start
  # Output Start
  file_base = out_rz
  exodus = true
[]      # Output END
#      # Input file END

modules/phase_field/tutorials/spinodal_decomposition/s5_energycurve.i

#
# Example simulation of an iron-chromium alloy at 500 C. Equilibrium
# concentrations are at 23.6 and 82.3 mol% Cr. Kappa value, free energy equation,
# and mobility equation were provided by Lars Hoglund. Solved using the split
# form of the Cahn-Hilliard equation.

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  nx = 25
  ny = 25
  nz = 0
  xmin = 0
  xmax = 25
  ymin = 0
  ymax = 25
  zmin = 0
  zmax = 0
  uniform_refine = 2
[]

[Variables]
  [./c]   # Mole fraction of Cr (unitless)
    order = FIRST
    family = LAGRANGE
    scaling = 1e+04
  [../]
  [./w]   # Chemical potential (eV/mol)
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./f_density]   # Local energy density (eV/mol)
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[ICs]
  [./concentrationIC]   # 46.774 mol% Cr with variations
    type = RandomIC
    min = 0.44774
    max = 0.48774
    seed = 210
    variable = c
  [../]
[]

[BCs]
  [./Periodic]
    [./c_bcs]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Kernels]
  [./w_dot]
    variable = w
    v = c
    type = CoupledTimeDerivative
  [../]
  [./coupled_res]
    variable = w
    type = SplitCHWRes
    mob_name = M
  [../]
  [./coupled_parsed]
    variable = c
    type = SplitCHParsed
    f_name = f_loc
    kappa_name = kappa_c
    w = w
  [../]
[]

[AuxKernels]
  # Calculates the energy density by combining the local and gradient energies
  [./f_density]   # (eV/mol/nm^2)
    type = TotalFreeEnergy
    variable = f_density
    f_name = 'f_loc'
    kappa_names = 'kappa_c'
    interfacial_vars = c
  [../]
[]

[Materials]
  # d is a scaling factor that makes it easier for the solution to converge
  # without changing the results. It is defined in each of the first three
  # materials and must have the same value in each one.
  [./kappa]                  # Gradient energy coefficient (eV nm^2/mol)
    type = GenericFunctionMaterial
    prop_names = 'kappa_c'
    prop_values = '8.125e-16*6.24150934e+18*1e+09^2*1e-27'
                  # kappa_c *eV_J*nm_m^2* d
  [../]
  [./mobility]               # Mobility (nm^2 mol/eV/s)
    # NOTE: This is a fitted equation, so only 'Conv' has units
    type = DerivativeParsedMaterial
    f_name = M
    args = c
    constant_names =       'Acr    Bcr    Ccr    Dcr
                            Ecr    Fcr    Gcr
                            Afe    Bfe    Cfe    Dfe
                            Efe    Ffe    Gfe
                            nm_m   eV_J   d'
    constant_expressions = '-32.770969 -25.8186669 -3.29612744 17.669757
                            37.6197853 20.6941796  10.8095813
                            -31.687117 -26.0291774 0.2286581   24.3633544
                            44.3334237 8.72990497  20.956768
                            1e+09      6.24150934e+18          1e-27'
    function = 'nm_m^2/eV_J/d*((1-c)^2*c*10^
                (Acr*c+Bcr*(1-c)+Ccr*c*log(c)+Dcr*(1-c)*log(1-c)+
                Ecr*c*(1-c)+Fcr*c*(1-c)*(2*c-1)+Gcr*c*(1-c)*(2*c-1)^2)
                +c^2*(1-c)*10^
                (Afe*c+Bfe*(1-c)+Cfe*c*log(c)+Dfe*(1-c)*log(1-c)+
                Efe*c*(1-c)+Ffe*c*(1-c)*(2*c-1)+Gfe*c*(1-c)*(2*c-1)^2))'
    derivative_order = 1
    outputs = exodus
  [../]
  [./local_energy]           # Local free energy function (eV/mol)
    type = DerivativeParsedMaterial
    f_name = f_loc
    args = c
    constant_names = 'A   B   C   D   E   F   G  eV_J  d'
    constant_expressions = '-2.446831e+04 -2.827533e+04 4.167994e+03 7.052907e+03
                            1.208993e+04 2.568625e+03 -2.354293e+03
                            6.24150934e+18 1e-27'
    function = 'eV_J*d*(A*c+B*(1-c)+C*c*log(c)+D*(1-c)*log(1-c)+
                E*c*(1-c)+F*c*(1-c)*(2*c-1)+G*c*(1-c)*(2*c-1)^2)'
    derivative_order = 2
  [../]
  [./precipitate_indicator]  # Returns 1/625 if precipitate
    type = ParsedMaterial
    f_name = prec_indic
    args = c
    function = if(c>0.6,0.0016,0)
  [../]
[]

[Postprocessors]
  [./step_size]             # Size of the time step
    type = TimestepSize
  [../]
  [./iterations]            # Number of iterations needed to converge timestep
    type = NumNonlinearIterations
  [../]
  [./nodes]                 # Number of nodes in mesh
    type = NumNodes
  [../]
  [./evaluations]           # Cumulative residual calculations for simulation
    type = NumResidualEvaluations
  [../]
  [./total_energy]          # Total free energy at each timestep
    type = ElementIntegralVariablePostprocessor
    variable = f_density
    execute_on = 'initial timestep_end'
  [../]
  [./num_features]          # Number of precipitates formed
    type = FeatureFloodCount
    variable = c
    threshold = 0.6
  [../]
  [./precipitate_area]      # Fraction of surface devoted to precipitates
    type = ElementIntegralMaterialProperty
    mat_prop = prec_indic
  [../]
  [./active_time]           # Time computer spent on simulation
    type = PerfGraphData
    section_name = "Root"
    data_type = total
  [../]
[]

[Preconditioning]
  [./coupled]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  l_max_its = 30
  l_tol = 1e-6
  nl_max_its = 50
  nl_abs_tol = 1e-9
  end_time = 604800   # 7 days
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type
                         -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly
                         ilu          1'
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 10
    cutback_factor = 0.8
    growth_factor = 1.5
    optimal_iterations = 7
  [../]
  [./Adaptivity]
    coarsen_fraction = 0.1
    refine_fraction = 0.7
    max_h_level = 2
  [../]
[]

[Outputs]
  exodus = true
  console = true
  csv = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/phase_field/examples/nucleation/cahn_hilliard.i

#
# Test the DiscreteNucleation material in a toy system. The global
# concentration is above the solubility limit, but below the spinodal.
# Without further intervention no nucleation will occur in a phase
# field model. The DiscreteNucleation material will locally modify the
# free energy to coerce nuclei to grow.
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 120
  ny = 120
  xmax = 500
  ymax = 500
  elem_type = QUAD
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./c]
        free_energy = F
        mobility = M
        kappa = kappa_c
        solve_type = REVERSE_SPLIT
      [../]
    [../]
  [../]
[]

[ICs]
  [./c_IC]
    type = RandomIC
    variable = c
    min = 0.2
    max = 0.21
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1 25'
  [../]
  [./chemical_free_energy]
    # simple double well free energy
    type = DerivativeParsedMaterial
    f_name = Fc
    args = 'c'
    constant_names       = 'barr_height  cv_eq'
    constant_expressions = '0.1          0'
    function = 16*barr_height*c^2*(1-c)^2 # +0.01*(c*plog(c,0.005)+(1-c)*plog(1-c,0.005))
    derivative_order = 2
    outputs = exodus
  [../]
  [./probability]
    # This is a made up toy nucleation rate it should be replaced by
    # classical nucleation theory in a real simulation.
    type = ParsedMaterial
    f_name = P
    args = c
    function = c*1e-7
    outputs = exodus
  [../]
  [./nucleation]
    # The nucleation material is configured to insert nuclei into the free energy
    # tht force the concentration to go to 0.95, and holds this enforcement for 500
    # time units.
    type = DiscreteNucleation
    f_name = Fn
    op_names  = c
    op_values = 0.90
    penalty = 5
    penalty_mode = MIN
    map = map
    outputs = exodus
  [../]
  [./free_energy]
    # add the chemical and nucleation free energy contributions together
    type = DerivativeSumMaterial
    derivative_order = 2
    args = c
    sum_materials = 'Fc Fn'
  [../]
[]

[UserObjects]
  [./inserter]
    # The inserter runs at the end of each time step to add nucleation events
    # that happend during the timestep (if it converged) to the list of nuclei
    type = DiscreteNucleationInserter
    hold_time = 100
    probability = P
  [../]
  [./map]
    # The map UO runs at the beginning of a timestep and generates a per-element/qp
    # map of nucleus locations. The map is only regenerated if the mesh changed or
    # the list of nuclei was modified.
    # The map converts the nucleation points into finite area objects with a given radius.
    type = DiscreteNucleationMap
    radius = 10
    periodic = c
    inserter = inserter
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm      lu          '

  nl_max_its = 20
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-10
  start_time = 0.0
  num_steps = 1200

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 10
    growth_factor = 1.5
    cutback_factor = 0.5
    optimal_iterations = 5
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/2d_moving_penetration/pl_test3nns.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_method = nodal_normal_based
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-10
  l_max_its = 10

  start_time = 0.0
  dt = 0.0125
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test3nns_out
  exodus = true
[]

[NodalNormals]
  boundary = 11
  corner_boundary = 20
[]

modules/richards/test/tests/jacobian_1/jn09.i

# unsaturated = false
# gravity = false
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGnone
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn09
  exodus = false
[]

modules/combined/test/tests/solid_mechanics/abaqus_implicit_creep/abaqus_implicit_creep.i

# Creep test using Abaqus CREEP subroutine interface

[Mesh]
  # file = cantilever.e
  type = GeneratedMesh
  dim = 3
  xmin = 0.0
  xmax = 15.0
  ymin = 0.0
  ymax = 1.5
  zmin = 0.0
  zmax = 3.0
  nx = 20
  ny = 2
  nz = 4
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  active = ''
  [./stress_mag]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx]
    family = MONOMIAL
  [../]
  [./stress_yy]
    family = MONOMIAL
  [../]
  [./stress_zz]
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]
  active = ''
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    point1 = '0 0 0'
    point2 = '0 1 0'
  [../]
  [./stress_mag]
    type = MaterialTensorAux
    variable = stress_mag
    index = 1
    tensor = stress
    point1 = '0 0 0'
    point2 = '0 1 0'
    quantity = vonmises
  [../]
  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    index = 0
    tensor = stress
    point1 = '0 0 0'
    point2 = '0 1 0'
    block = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    variable = stress_zz
    index = 2
    tensor = stress
    point1 = '0 0 0'
    point2 = '0 1 0'
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = right
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value = 0.0
  [../]
  [./Pressure]
    [./press]
      disp_z = disp_z
      disp_y = disp_y
      disp_x = disp_x
      factor = -5
      boundary = left
    [../]
  [../]
[]

[Materials]
  [./solid]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    youngs_modulus = 209000
    poissons_ratio = 0.3
  [../]
  [./creep]
    type = AbaqusCreepMaterial
    block = 0
    plugin = ../../plugins/creep_usr_creep
    poissons_ratio = 0.3
    integration_flag = 1
    num_state_vars = 2
    youngs_modulus = 209000
    solve_definition = 5
  [../]
[]

[Executioner]
  # l_max_its = 60
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew '
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type'
  petsc_options_value = '101 hypre boomeramg'
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-7
  l_tol = 1e-5
  start_time = 0.0
  dt = 1
  num_steps = 1
[]

[Outputs]
  file_base = out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/functions/image_function/error/threshold_values.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./tif]
    type = ImageFunction
    file_base = ../stack/test
    file_suffix = png
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    threshold = 30000
    upper_value = 1
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = tif
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[../]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_1/plane1_template1.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane1_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/adaptive_timestepping/adapt_tstep_function_change_restart2.i

# This is a test designed to evaluate the cabability of the
# IterationAdaptiveDT TimeStepper to adjust time step size according to
# a function.  For example, if the power input function for a BISON
# simulation rapidly increases or decreases, the IterationAdaptiveDT
# TimeStepper should take time steps small enough to capture the
# oscillation.

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  order = FIRST
  family = LAGRANGE
  block = 1
[]

[Mesh]
  file = 1hex8_10mm_cube.e
[]

[Functions]
  [./Fiss_Function]
    type = PiecewiseLinear
    x = '0 1e6  2e6  2.001e6 2.002e6'
    y = '0 3e8  3e8  12e8    0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

  [./temp]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    volumetric_locking_correction = true
    incremental = true
    eigenstrain_names = thermal_expansion
    decomposition_method = EigenSolution
    add_variables  = true
    generate_output = 'vonmises_stress'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]

  [./heat_source]
     type = HeatSource
     variable = temp
     value = 1.0
     function = Fiss_Function
  [../]
[]

[BCs]
 [./bottom_temp]
   type = DirichletBC
   variable = temp
   boundary = 1
   value = 300
 [../]
 [./top_bottom_disp_x]
   type = DirichletBC
   variable = disp_x
   boundary = '1'
   value = 0
 [../]
 [./top_bottom_disp_y]
   type = DirichletBC
   variable = disp_y
   boundary = '1'
   value = 0
 [../]
 [./top_bottom_disp_z]
   type = DirichletBC
   variable = disp_z
   boundary = '1'
   value = 0
 [../]
[]

[Materials]
 [./thermal]
    type = HeatConductionMaterial
    temp = temp
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 300e6
    poissons_ratio = .3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 5e-6
    stress_free_temperature = 300.0
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]

  [./density]
    type = Density
    density = 10963.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  verbose = true
  nl_abs_tol = 1e-10
  num_steps = 50000
  end_time = 2.002e6
  [./TimeStepper]
    type = IterationAdaptiveDT
    timestep_limiting_function = Fiss_Function
    max_function_change = 3e7
    dt = 1e6
  [../]
[]

[Postprocessors]
  [./Temperature_of_Block]
    type = ElementAverageValue
    variable = temp
    execute_on = 'timestep_end'
  [../]

  [./vonMises]
    type = ElementAverageValue
    variable = vonmises_stress
    execute_on = 'timestep_end'
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

[Problem]
  restart_file_base = adapt_tstep_function_change_restart1_checkpoint_cp/0065
[]

modules/porous_flow/test/tests/fluidstate/theis_tabulated.i

# Two phase Theis problem: Flow from single source using WaterNCG fluidstate.
# Constant rate injection 2 kg/s
# 1D cylindrical mesh
# Initially, system has only a liquid phase, until enough gas is injected
# to form a gas phase, in which case the system becomes two phase.
# Note: this test is the same as theis.i, but uses the tabulated version of the CO2FluidProperties

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 80
  xmax = 200
  bias_x = 1.05
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = Y
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[AuxVariables]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./y0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1]
    type = PorousFlowPropertyAux
    variable = x1
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./y0]
    type = PorousFlowPropertyAux
    variable = y0
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = timestep_end
  [../]
[]

[Variables]
  [./pgas]
    initial_condition = 20e6
  [../]
  [./zi]
    initial_condition = 0
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pgas
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pgas
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = zi
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = zi
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowWaterNCG
    water_fp = water
    gas_fp = tabulated
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./tabulated]
      type = TabulatedFluidProperties
      fp = co2
      fluid_property_file = fluid_properties.csv
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = zi
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
  [../]
[]

[BCs]
  [./rightwater]
    type = DirichletBC
    boundary = right
    value = 20e6
    variable = pgas
  [../]
[]

[DiracKernels]
  [./source]
    type = PorousFlowSquarePulsePointSource
    point = '0 0 0'
    mass_flux = 2
    variable = zi
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-8       1E-10 20'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 8e2
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 2
    growth_factor = 2
  [../]
[]

[VectorPostprocessors]
  [./line]
    type = LineValueSampler
    sort_by = x
    start_point = '0 0 0'
    end_point = '200 0 0'
    num_points = 1000
    variable = 'pgas zi x1 saturation_gas'
    execute_on = 'timestep_end'
  [../]
[]

[Postprocessors]
  [./pgas]
    type = PointValue
    point =  '1 0 0'
    variable = pgas
  [../]
  [./sgas]
    type = PointValue
    point =  '1 0 0'
    variable = saturation_gas
  [../]
  [./zi]
    type = PointValue
    point = '1 0 0'
    variable = zi
  [../]
  [./massgas]
    type = PorousFlowFluidMass
    fluid_component = 1
  [../]
  [./x1]
    type = PointValue
    point =  '1 0 0'
    variable = x1
  [../]
  [./y0]
    type = PointValue
    point =  '1 0 0'
    variable = y0
  [../]
[]

[Outputs]
  print_linear_residuals = false
  perf_graph = true
  [./csvout]
    type = CSV
    file_base = theis_tabulated_csvout
    execute_on = timestep_end
    execute_vector_postprocessors_on = final
  [../]
[]

modules/richards/test/tests/jacobian_1/jn15.i

# unsaturated = false
# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn15
  exodus = false
[]

modules/combined/test/tests/phase_field_fracture/crack2d_vol_dev.i

#This input uses PhaseField-Nonconserved Action to add phase field fracture bulk rate kernels
[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 20
    ny = 10
    ymax = 0.5
  []
  [./noncrack]
    type = BoundingBoxNodeSetGenerator
    new_boundary = noncrack
    bottom_left = '0.5 0 0'
    top_right = '1 0 0'
    input = gen
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Modules]
  [./PhaseField]
    [./Nonconserved]
      [./c]
        free_energy = F
        kappa = kappa_op
        mobility = L
      [../]
    [../]
  [../]
  [./TensorMechanics]
    [./Master]
      [./mech]
        add_variables = true
        strain = SMALL
        additional_generate_output = 'stress_yy'
        save_in = 'resid_x resid_y'
      [../]
    [../]
  [../]
[]

[AuxVariables]
  [./resid_x]
  [../]
  [./resid_y]
  [../]
[]

[Kernels]
  [./solid_x]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_x
    component = 0
    c = c
  [../]
  [./solid_y]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_y
    component = 1
    c = c
  [../]
[]

[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 't'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = noncrack
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value = 0
  [../]
[]

[Materials]
  [./pfbulkmat]
    type = GenericConstantMaterial
    prop_names = 'gc_prop l visco'
    prop_values = '1e-3 0.04 1e-4'
  [../]
  [./define_mobility]
    type = ParsedMaterial
    material_property_names = 'gc_prop visco'
    f_name = L
    function = '1.0/(gc_prop * visco)'
  [../]
  [./define_kappa]
    type = ParsedMaterial
    material_property_names = 'gc_prop l'
    f_name = kappa_op
    function = 'gc_prop * l'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
  [../]
  [./damage_stress]
    type = ComputeLinearElasticPFFractureStress
    c = c
    E_name = 'elastic_energy'
    D_name = 'degradation'
    F_name = 'local_fracture_energy'
    decomposition_type = strain_vol_dev
  [../]
  [./degradation]
    type = DerivativeParsedMaterial
    f_name = degradation
    args = 'c'
    function = '(1.0-c)^2*(1.0 - eta) + eta'
    constant_names       = 'eta'
    constant_expressions = '0.0'
    derivative_order = 2
  [../]
  [./local_fracture_energy]
    type = DerivativeParsedMaterial
    f_name = local_fracture_energy
    args = 'c'
    material_property_names = 'gc_prop l'
    function = 'c^2 * gc_prop / 2 / l'
    derivative_order = 2
  [../]
  [./fracture_driving_energy]
    type = DerivativeSumMaterial
    args = c
    sum_materials = 'elastic_energy local_fracture_energy'
    derivative_order = 2
    f_name = F
  [../]
[]

[Postprocessors]
  [./resid_x]
    type = NodalSum
    variable = resid_x
    boundary = 2
  [../]
  [./resid_y]
    type = NodalSum
    variable = resid_y
    boundary = 2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_rel_tol = 1e-8
  l_max_its = 10
  nl_max_its = 10

  dt = 1e-4
  dtmin = 1e-4
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/cwpc02.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 2.055555555556E-01
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 10.0
    poisson = 0.25
    layer_thickness = 10.0
    joint_normal_stiffness = 2.5
    joint_shear_stiffness = 2.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1 0.1 0.2  0.1 1 0.3  0 0 2' # not symmetric
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = stress
  [../]
  [./stress]
    type = CappedWeakPlaneCosseratStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0.1
    smoothing_tol = 0.1
    yield_function_tol = 1E-5
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  end_time = 1
  dt = 1
  type = Transient
[]

test/tests/controls/time_periods/nodalkernels/nodal.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./nodal_ode]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[NodalKernels]
  [./td]
    type = TimeDerivativeNodalKernel
    variable = nodal_ode
  [../]
  [./constant_rate]
    type = ConstantRate
    variable = nodal_ode
    rate = 1.0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
[]

[Controls]
  [./time_period]
    type = TimePeriod
    enable_objects = '*::constant_rate'
    start_time = 0.5
    end_time = 1
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_scalar_to_auxscalar_transfer/to_sub/sub_wrong_order.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./b]
    family = SCALAR
    order = SIXTH
  [../]
[]

[Kernels]
  [./diffusion]
    type = Diffusion
    variable = u
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient
[]

[Outputs]
  hide = 'u'
  exodus = true
[]

test/tests/geomsearch/patch_update_strategy/always.i

[Mesh]
  type = FileMesh
  file = long_range.e
  dim = 2
  patch_update_strategy = always
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./u]
    block = right
  [../]
[]

[AuxVariables]
  [./linear_field]
  [../]
  [./receiver]
    # The field to transfer into
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./elemental_reciever]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./linear_in_y]
    # This just gives us something to transfer that varies in y so we can ensure the transfer is working properly...
    type = FunctionAux
    variable = linear_field
    function = y
    execute_on = initial
  [../]
  [./right_to_left]
    type = GapValueAux
    variable = receiver
    paired_variable = linear_field
    paired_boundary = rightleft
    execute_on = timestep_end
    boundary = leftright
  [../]
  [./y_displacement]
    type = FunctionAux
    variable = disp_y
    function = t
    execute_on = 'linear timestep_begin'
    block = left
  [../]
  [./elemental_right_to_left]
    type = GapValueAux
    variable = elemental_reciever
    paired_variable = linear_field
    paired_boundary = rightleft
    boundary = leftright
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = righttop
    value = 1
  [../]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = rightbottom
    value = 0
  [../]
[]

[Problem]
  type = FEProblem
  kernel_coverage_check = false
[]

[Executioner]
  type = Transient
  num_steps = 30
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer/sobol.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = SobolSampler
    num_rows = 3
    distributions = 'uniform_left uniform_right'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
    execute_on = INITIAL
    check_multiapp_execute_on = false
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

modules/tensor_mechanics/test/tests/global_strain/global_strain_shear.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 1
    ny = 1
    nz = 1
  []
  [cnode]
    type = ExtraNodesetGenerator
    coord = '0.0 0.0 0.0'
    new_boundary = 100
    input = generated_mesh
  []
[]

[Variables]
  [./u_x]
  [../]
  [./u_y]
  [../]
  [./u_z]
  [../]
  [./global_strain]
    order = SIXTH
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./s01]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e01]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = GlobalDisplacementAux
    variable = disp_x
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 1
  [../]
  [./disp_y]
    type = GlobalDisplacementAux
    variable = disp_y
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 1
  [../]
  [./disp_z]
    type = GlobalDisplacementAux
    variable = disp_z
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 2
  [../]
  [./s01]
    type = RankTwoAux
    variable = s01
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
  [../]
  [./e01]
    type = RankTwoAux
    variable = e01
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 1
  [../]
[]

[GlobalParams]
  displacements = 'u_x u_y u_z'
  block = 0
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[ScalarKernels]
  [./global_strain]
    type = GlobalStrain
    variable = global_strain
    global_strain_uo = global_strain_uo
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y z'
      variable = ' u_x u_y u_z'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = u_x
    value = 0
  [../]
  [./centerfix_y]
    type = DirichletBC
    boundary = 100
    variable = u_y
    value = 0
  [../]
  [./centerfix_z]
    type = DirichletBC
    boundary = 100
    variable = u_z
    value = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '70e9 0.33'
    fill_method = symmetric_isotropic_E_nu
  [../]
  [./strain]
    type = ComputeSmallStrain
    global_strain = global_strain
  [../]
  [./global_strain]
    type = ComputeGlobalStrain
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[UserObjects]
  [./global_strain_uo]
    type = GlobalStrainUserObject
    applied_stress_tensor = '0 0 0 5e9 5e9 5e9'
    execute_on = 'Initial Linear Nonlinear'
  [../]
[]

[Postprocessors]
  [./l2err_e01]
    type = ElementL2Error
    variable = e01
    function = 0.095 #Shear strain check
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  line_search = basic

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  l_max_its = 30
  nl_max_its = 12

  l_tol = 1.0e-4

  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_4/brick4_mu_0_2_pen_sm.i

[Mesh]
  file = brick4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
  [./tang_force_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_x
  [../]
  [./disp_x64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_x
  [../]
  [./disp_y59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_y
  [../]
  [./disp_y64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  file_base = brick4_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = brick4_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x59 disp_y59 disp_x64 disp_y64 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+6
  [../]
[]

modules/tensor_mechanics/test/tests/finite_strain_jacobian/3d_bar.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    xmin = 0
    xmax = 2
    ymin = 0
    ymax = 2
    zmin = 0
    zmax = 10
    nx = 10
    ny = 2
    nz = 2
    elem_type = HEX8
  []
  [corner]
    type = ExtraNodesetGenerator
    new_boundary = 101
    coord = '0 0 0'
    input = generated_mesh
  []
  [side]
    type = ExtraNodesetGenerator
    new_boundary = 102
    coord = '2 0 0'
    input = corner
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    use_finite_deform_jacobian = true
    volumetric_locking_correction = false
  [../]
[]

[Materials]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric9
    C_ijkl = '1.684e5 0.176e5 0.176e5 1.684e5 0.176e5 1.684e5 0.754e5 0.754e5 0.754e5'
  [../]
[]

[BCs]
 [./fix_corner_x]
   type = DirichletBC
   variable = disp_x
   boundary = 101
   value = 0
 [../]
 [./fix_corner_y]
   type = DirichletBC
   variable = disp_y
   boundary = 101
   value = 0
 [../]
 [./fix_side_y]
   type = DirichletBC
   variable = disp_y
   boundary = 102
   value = 0
 [../]
 [./fix_z]
   type = DirichletBC
   variable = disp_z
   boundary = back
   value = 0
 [../]
 [./move_z]
   type = FunctionDirichletBC
   variable = disp_z
   boundary = front
   function = 't'
 [../]
[]

[Executioner]
  type = Transient

  solve_type = NEWTON
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_max_its = 10

  l_tol  = 1e-4
  l_max_its = 50

  dt = 0.2
  dtmin = 0.2

  num_steps = 2
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/perf_graph/multi_app/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  uniform_refine = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  perf_graph = true
[]

test/tests/time_integrators/actually_explicit_euler_verification/ee-1d-quadratic.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -1
  xmax = 1
  nx = 20
  elem_type = EDGE3
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = x*x-2*t
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*x*x
  [../]
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = '0 1'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  l_tol = 1e-12
  start_time = 0.0
  num_steps = 20
  dt = 0.00005

  [./TimeIntegrator]
    type = ActuallyExplicitEuler
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/xfem/test/tests/solid_mechanics_basic/penny_crack_cfp.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
  xmin = -1.1
  xmax = 1.1
  ymin = -1.1
  ymax = 1.1
  zmin = -1.1
  zmax = 1.1
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[UserObjects]
  [./circle_cut_uo]
    type = CircleCutUserObject
    cut_data = '0  0 0
                0 -0.5 0
                -0.5 0 0'
  [../]
[]

[AuxVariables]
  [./SED]
   order = CONSTANT
    family = MONOMIAL
  [../]
[]

[DomainIntegral]
  integrals = 'Jintegral'
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  crack_direction_method = CurvedCrackFront
  radius_inner = '0.3'
  radius_outer = '0.6'
  poissons_ratio = 0.3
  youngs_modulus = 207000
  block = 0
  crack_front_points_provider = circle_cut_uo
  number_points_from_provider = 10
  convert_J_to_K = true
  closed_loop = true
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
    block = 0
  [../]
[]

[Functions]
  [./top_trac_z]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_z]
    type = FunctionNeumannBC
    boundary = front
    variable = disp_z
    function = top_trac_z
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = back
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = back
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = back
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/solid_mechanics/spherical_shell/sm/1D-SPH_test_sm.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces. Three versions of the test are
# provided, assuming 1D spherical geometry (1D-SPH), 2D axisymmetic geometry
# (2D-RZ), and 3D geometry (3D). The tests demonstrate that all three geometric
# approaches produce the same correct solution.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000, respectively. The resulting compressive tangential
# stress is largest at the inner wall and, from the above equation, has a value
# of -271429.
#
# RESULTS are below. Since stresses are average element values, values for the
# edge element and one-element-in are used to extrapolate the stress to the
# inner surface. The vesrion of the tests that are checked use the coarsest meshes.
#
#  Mesh    Radial elem   S(edge elem)  S(one elem in)  S(extrap to surf)
# 1D-SPH       12          -264842      -254419        -270053
# 2D-RZ        12          -265007      -254668        -270177
#  3D          12 (4x4)    -258922      -251099        -262834
#  3D          12 (6x6)    -262194      -252969        -266807
#
# 1D-SPH       48          -269679      -266390        -271323
# 2D-RZ        48          -269723      -266470        -271350
#  3D          48          -268617      -265717        -270067
#
# 1D-SPH      100          -270580      -268932        -271404
# 2D-RZ       100          -270587      -268946        -271408
#
# The numerical solution converges to the analytical solution as the mesh is
# refined.

[GlobalParams]
  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  volumetric_locking_correction = false
[]

[Mesh]
  file = 1D-SPH_mesh.e
  displacements = 'disp_x'
  construct_side_list_from_node_list = true
[]

[Problem]
  coord_type = RSPHERICAL
[]

[Variables]
  [./disp_x]
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./exterior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = outer
    component = 0
    factor = 200000
  [../]

  [./interior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = inner
    component = 0
    factor = 100000
  [../]
[]

[Materials]
 [./fuel_disp]
    type = Elastic
    block = 1
    disp_r = disp_x
    youngs_modulus = 1e10
    poissons_ratio = .345
    thermal_expansion = 0
  [../]
[]

[Debug]
    show_var_residual_norms = true
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

   start_time = 0.0
   end_time = 1
   num_steps = 1000

  dtmax = 5e6
  dtmin = 1
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    optimal_iterations = 6
    iteration_window = 0
    linear_iteration_ratio = 100
  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

#  [./Quadrature]
#    order = THIRD
#  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  csv = false
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform24.i

# apply repeated stretches in z directions, and smaller stretches along the x and y directions,
# so that sigma_mid = sigma_min (approximately),
# which means that lode angle = -30deg.
# The allows yield surface in meridional plane to be mapped out


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.25E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.25E-6*y*sin(t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 6
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./mc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    smoothing_tol = 5.0
    yield_function_tol = 1.0E-7
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 30
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform24
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_4/brick4_mu_0_2_pen.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick4_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
  [./tang_force_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_x
  [../]
  [./disp_x64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_x
  [../]
  [./disp_y59]
    type = NodalVariableValue
    nodeid = 58
    variable = disp_y
  [../]
  [./disp_y64]
    type = NodalVariableValue
    nodeid = 63
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  file_base = brick4_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = brick4_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x59 disp_y59 disp_x64 disp_y64 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+6
  [../]
[]

modules/solid_mechanics/test/tests/j_integral/j_integral_3d_points.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = crack3d.e
  displacements = 'disp_x disp_y disp_z'
#  partitioner = centroid
#  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  crack_front_points = '0 -10 .5
                        0 -10 0
                        0 -10 -.5'
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

#  [./pin_x]
#    type = DirichletBC
#    variable = disp_x
#    boundary = 200
#    value = 0.0
#  [../]
#
#  [./pin_y]
#    type = DirichletBC
#    variable = disp_y
#    boundary = 200
#    value = 0.0
#  [../]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

 # [./nocrack_y]
 #   type = DirichletBC
 #   variable = disp_y
 #   boundary = 600
 #   value = 0.0
 # [../]

# [./no_x]
#   type = DirichletBC
#   variable = disp_x
#   boundary = 500
#   value = 0.0
# [../]
# [./no_y]
#   type = DirichletBC
#   variable = disp_y
#   boundary = 500
#   value = 0.0
# [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = j_integral_3d_points_out
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/beam/eigenstrain/eigenstrain_from_var.i

# Test for eigenstrain from variables

# A constant axial eigenstrain of 0.01 is applied to a beam of length
# 4 m. The beam is fixed at one end. The eigenstrain causes a change in
# length of 0.04 m irrespective of the material properties of the beam.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./thermal_eig]
  [../]
  [./zero1]
  [../]
  [./zero2]
  [../]
[]

[AuxKernels]
  [./thermal_eig]
    type = ConstantAux
    value = 0.01
    variable = thermal_eig
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.5
    Ay = 0.0
    Az = 0.0
    Iy = 0.01
    Iz = 0.01
    y_orientation = '0.0 1.0 0.0'
    eigenstrain_names = 'thermal'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
  [./thermal]
    type = ComputeEigenstrainBeamFromVariable
    displacement_eigenstrain_variables = 'thermal_eig zero1 zero2'
    eigenstrain_name = thermal
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    hide = 'thermal_eig zero1 zero2'
  [../]
[]

test/tests/transfers/multiapp_nearest_node_transfer/boundary_tosub_master.i

[Mesh]
  file = 2blk.e
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left_1]
    type = DirichletBC
    variable = u
    boundary = '1'
    value = 4
  [../]
  [./left_2]
    type = DirichletBC
    variable = u
    boundary = '2'
    value = 3
  [../]

  [./right_3]
    type = DirichletBC
    variable = u
    boundary = '3'
    value = 2
  [../]
  [./right_4]
    type = DirichletBC
    variable = u
    boundary = '4'
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 -4 0'
    input_files = boundary_tosub_sub.i
  [../]
[]

[Transfers]
  [./to_sub_1]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    source_boundary = 1
    variable = from_master_1
  [../]
  [./to_sub_2]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    source_boundary = 2
    variable = from_master_2
  [../]
  [./to_sub_3]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    source_boundary = 3
    variable = from_master_3
  [../]
  [./to_sub_4]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    source_boundary = 4
    variable = from_master_4
  [../]
[]

modules/porous_flow/test/tests/mass_conservation/mass02.i

# checking that the mass postprocessor correctly calculates the mass
# 1phase, 2component, constant porosity
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 3
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./mass_frac_comp0]
  [../]
[]

[ICs]
  [./pinit]
    type = FunctionIC
    function = x
    variable = pp
  [../]
  [./minit]
    type = FunctionIC
    function = 'x*x'
    variable = mass_frac_comp0
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = mass_frac_comp0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp mass_frac_comp0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'mass_frac_comp0'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Postprocessors]
  [./total_mass_0]
    type = PorousFlowFluidMass
  [../]
  [./total_mass_1]
    type = PorousFlowFluidMass
    fluid_component = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1 1 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mass02
  csv = true
[]

modules/richards/test/tests/mass/m_fu_01.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
  xmin = -1
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.5
    al = 1 # same deal with PETScs constant state
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = x
  [../]
[]

[Postprocessors]
  [./total_mass]
    type = RichardsMass
    variable = pressure
  [../]
[]

[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1 1 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-10
  end_time = 1E-10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = m_fu_01
  csv = true
[]

test/tests/transfers/multiapp_interpolation_transfer/tosub_master.i

###########################################################
# This is a test of the Transfer System. This test
# uses the Multiapp System to solve independent problems
# related geometrically. Solutions are then interpolated
# and transferred to a non-aligned domain.
#
# @Requirement F7.20
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = .21
  xmax = .79
  displacements = 'disp_x disp_y'
  # The MultiAppInterpolationTransfer object only works with ReplicatedMesh
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./disp_x]
    initial_condition = 0.4
  [../]
  [./disp_y]
  [../]
  [./elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./x_func]
    type = ParsedFunction
    value = x
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./x_func_aux]
    type = FunctionAux
    variable = elemental
    function = x_func
    execute_on = initial
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0.2 0 0'
    input_files = tosub_sub.i
  [../]
[]

[Transfers]
  [./tosub]
    type = MultiAppInterpolationTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = from_master
  [../]
  [./elemental_tosub]
    type = MultiAppInterpolationTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = elemental_from_master
  [../]
  [./radial_tosub]
    type = MultiAppInterpolationTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = radial_from_master
    interp_type = radial_basis
  [../]
  [./radial_elemental_tosub]
    type = MultiAppInterpolationTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = radial_elemental_from_master
    interp_type = radial_basis
  [../]
  [./displaced_target_tosub]
    type = MultiAppInterpolationTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = displaced_target_from_master
    displaced_target_mesh = true
  [../]
  [./displaced_source_tosub]
    type = MultiAppInterpolationTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = displaced_source_from_master
    displaced_source_mesh = true
  [../]
  [./elemental_to_sub_elemental]
    type = MultiAppInterpolationTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = elemental
    variable = elemental_from_master_elemental
  [../]
  [./elemental_to_sub_nodal]
    type = MultiAppInterpolationTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = elemental
    variable = nodal_from_master_elemental
  [../]
[]

test/tests/kernels/ad_coupled_value/ad_aux_coupled_time_value.i

###########################################################
# This is a simple test of coupling an aux variable into the
# ADCoupledTimeDerivative kernel.
# The expected solution for the variable v is
# v(x) = 1/2 * (x^2 + x)
###########################################################

[Mesh]
  type = GeneratedMesh
  nx = 5
  ny = 5
  dim = 2
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Functions]
  [./u]
    type = ParsedFunction
    value = 't'
  [../]
[]

[AuxKernels]
  [./u]
    type = FunctionAux
    variable = u
    function = u
  [../]
[]

[Kernels]
  [./time_v]
    type = ADCoupledTimeDerivative
    variable = v
    v = u
  [../]
  [./diff_v]
    type = ADDiffusion
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = v
    boundary = 'left'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = v
    boundary = 'right'
    value = 1
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  []
[]

[Postprocessors]
  [./l2]
    type = ElementL2Error
    variable = v
    function = '1/2 * (x^2 + x)'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'NEWTON'
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/multilevel/dt_from_master_subsub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_copy_transfer/aux_to_aux/sub.i

[Problem]
  type = FEProblem
  solve = false
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[AuxVariables/aux]
  initial_condition = 1980
[]

[Executioner]
  type = Transient
[]

[Outputs]
  execute_on = 'FINAL'
  exodus = true
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_3d_as_2d_topo_q_func.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with one element
#through the thickness, and calculates the J-Integrals using options
#to treat it as 2d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack_3d_as_2d.e
  partitioner = centroid
  centroid_partitioner_direction = z
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  q_function_type = Topology
  ring_first = 1
  ring_last = 3
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1
[]

[Outputs]
  file_base = j_integral_3d_as_2d_topo_q_func_out
  exodus = true
  csv = true
[]

test/tests/restart/kernel_restartable/kernel_restartable.i

###########################################################
# This test exercises the restart system and verifies
# correctness with parallel computation, but distributed
# and with threading.
#
# See kernel_restartable_second.i
#
# @Requirement F1.60
# @Requirement P1.10
# @Requirement P1.20
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = RestartDiffusion
    variable = u
    coef = 1
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 1e-2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  [./restart]
    type = Checkpoint
    num_files = 100
  [../]
[]

modules/porous_flow/test/tests/sinks/s03.i

# apply a sink flux with use_relperm=true and observe the correct behavior
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1.1
  [../]
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = -y
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.3
      density0 = 1.1
      thermal_expansion = 0
      viscosity = 1.1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0.2 0 0 0 0.1 0 0 0 0.1'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[AuxVariables]
  [./flux_out]
  [../]
  [./xval]
  [../]
  [./yval]
  [../]
[]

[ICs]
  [./xval]
    type = FunctionIC
    variable = xval
    function = x
  [../]
  [./yval]
    type = FunctionIC
    variable = yval
    function = y
  [../]
[]

[Functions]
  [./mass00]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)*pow(1+pow(-al*pp,1.0/(1-m)),-m)'
    vars = 'vol por dens0 pp bulk al m'
    vals = '0.25 0.1 1.1 p00 1.3 1.1 0.5'
  [../]
  [./sat00]
    type = ParsedFunction
    value = 'pow(1+pow(-al*pp,1.0/(1-m)),-m)'
    vars = 'pp al m'
    vals = 'p00 1.1 0.5'
  [../]
  [./mass01]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)*pow(1+pow(-al*pp,1.0/(1-m)),-m)'
    vars = 'vol por dens0 pp bulk al m'
    vals = '0.25 0.1 1.1 p01 1.3 1.1 0.5'
  [../]
  [./expected_mass_change00]
    type = ParsedFunction
    value = 'fcn*pow(pow(1+pow(-al*pp,1.0/(1-m)),-m),2)*area*dt'
    vars = 'fcn perm dens0 pp bulk visc area dt   al  m'
    vals = '6   0.2  1.1  p00 1.3  1.1  0.5  1E-3 1.1 0.5'
  [../]
  [./expected_mass_change01]
    type = ParsedFunction
    value = 'fcn*pow(pow(1+pow(-al*pp,1.0/(1-m)),-m),2)*area*dt'
    vars = 'fcn perm dens0 pp bulk visc area dt   al  m'
    vals = '6   0.2  1.1  p01 1.3  1.1  0.5  1E-3 1.1 0.5'
  [../]
  [./mass00_expect]
    type = ParsedFunction
    value = 'mass_prev-mass_change'
    vars = 'mass_prev mass_change'
    vals = 'm00_prev  del_m00'
  [../]
  [./mass01_expect]
    type = ParsedFunction
    value = 'mass_prev-mass_change'
    vars = 'mass_prev mass_change'
    vals = 'm01_prev  del_m01'
  [../]
  [./sat01]
    type = ParsedFunction
    value = 'pow(1+pow(-al*pp,1.0/(1-m)),-m)'
    vars = 'pp al m'
    vals = 'p01 1.1 0.5'
  [../]
  [./expected_mass_change_rate]
    type = ParsedFunction
    value = 'fcn*pow(pow(1+pow(-al*pp,1.0/(1-m)),-m),2)*area'
    vars = 'fcn perm dens0 pp bulk visc area dt   al  m'
    vals = '6   0.2  1.1  p00 1.3  1.1  0.5  1E-3 1.1 0.5'
  [../]
[]

[Postprocessors]
  [./p00]
    type = PointValue
    point = '0 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m00]
    type = FunctionValuePostprocessor
    function = mass00
    execute_on = 'initial timestep_end'
  [../]
  [./m00_prev]
    type = FunctionValuePostprocessor
    function = mass00
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./del_m00]
    type = FunctionValuePostprocessor
    function = expected_mass_change00
    execute_on = 'timestep_end'
    outputs = 'console'
  [../]
  [./m00_expect]
    type = FunctionValuePostprocessor
    function = mass00_expect
    execute_on = 'timestep_end'
  [../]
  [./p10]
    type = PointValue
    point = '1 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./p01]
    type = PointValue
    point = '0 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m01]
    type = FunctionValuePostprocessor
    function = mass01
    execute_on = 'initial timestep_end'
  [../]
  [./m01_prev]
    type = FunctionValuePostprocessor
    function = mass01
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./del_m01]
    type = FunctionValuePostprocessor
    function = expected_mass_change01
    execute_on = 'timestep_end'
    outputs = 'console'
  [../]
  [./m01_expect]
    type = FunctionValuePostprocessor
    function = mass01_expect
    execute_on = 'timestep_end'
  [../]
  [./p11]
    type = PointValue
    point = '1 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./s00]
    type = FunctionValuePostprocessor
    function = sat00
    execute_on = 'initial timestep_end'
  [../]
  [./mass00_rate]
    type = FunctionValuePostprocessor
    function = expected_mass_change_rate
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./flux]
    type = PorousFlowSink
    boundary = 'left'
    variable = pp
    use_mobility = false
    use_relperm = true
    fluid_phase = 0
    flux_function = 6
    save_in = flux_out
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_max_it -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu 10 NONZERO 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-3
  end_time = 0.018
  nl_rel_tol = 1E-12
  nl_abs_tol = 1E-12
[]

[Outputs]
  file_base = s03
  [./console]
    type = Console
    execute_on = 'nonlinear linear'
    interval = 5
  [../]
  [./csv]
    type = CSV
    execute_on = 'timestep_end'
    interval = 2
  [../]
[]

modules/porous_flow/test/tests/heat_advection/heat_advection_1d_KT.i

# 1phase, heat advecting with a moving fluid
# Using the Kuzmin-Turek stabilization scheme
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 50
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./temp]
    initial_condition = 200
  [../]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = '1-x'
  [../]
[]

[BCs]
  [./pp0]
    type = DirichletBC
    variable = pp
    boundary = left
    value = 1
  [../]
  [./pp1]
    type = DirichletBC
    variable = pp
    boundary = right
    value = 0
  [../]
  [./spit_heat]
    type = DirichletBC
    variable = temp
    boundary = left
    value = 300
  [../]
  [./suck_heat]
    type = DirichletBC
    variable = temp
    boundary = right
    value = 200
  [../]
[]

[Kernels]
  [./mass_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./fluid_advection]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = pp
    advective_flux_calculator = fluid_advective_flux
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
  [./heat_advection]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = temp
    advective_flux_calculator = heat_advective_flux
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.6
    alpha = 1.3
  [../]
  [./fluid_advective_flux]
    type = PorousFlowAdvectiveFluxCalculatorSaturated
    flux_limiter_type = superbee
  [../]
  [./heat_advective_flux]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedHeat
    flux_limiter_type = superbee
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 100
      density0 = 1000
      viscosity = 4.4
      thermal_expansion = 0
      cv = 2
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.0
    density = 125
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./PS]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.01
  end_time = 0.6
[]

[VectorPostprocessors]
  [./T]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 51
    sort_by = x
    variable = temp
  [../]
[]

[Outputs]
  file_base = heat_advection_1d_KT
  [./csv]
    type = CSV
    sync_times = '0.1 0.6'
    sync_only = true
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform13.i

# Using CappedMohrCoulomb with compressive failure only
# checking for small deformation
# A single element is compressed by "ep" in the z and x directions
# This causes the return direction to be along the hypersurface sigma_I = sigma_II
# where sigma_I = (E_2222 + E_2200) * ep
# compressive_strength is set to 1Pa, smoothing_tol = 0.1Pa
# The smoothed yield function is
# yf = -sigma_I + ismoother(0) - compressive_strength
#    = -sigma_I + (0.5 * smoothing_tol - smoothing_tol / Pi) - compressive_strength
#    = -sigma_I - 0.98183
#
# With zero Poisson's ratio, the return stress will be
# stress_00 = stress_22 = 0.98183
# with all other stress components being zero

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-0.25E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-0.25E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform13
  csv = true
[]

modules/combined/test/tests/DiffuseCreep/stress_flux_n_gb_relax.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 2
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);0.1+0.1*v'
    [../]
  [../]
  [./mu]
  [../]
  [./jx]
  [../]
  [./jy]
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./gb]
    family = LAGRANGE
    order  = FIRST
  [../]
  [./creep_strain_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./creep_strain_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./creep_strain_xy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./stress_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
[]

[Kernels]
  [./conc]
    type = CHSplitConcentration
    variable = c
    mobility = mobility_prop
    chemical_potential_var = mu
  [../]
  [./chempot]
    type = CHSplitChemicalPotential
    variable = mu
    chemical_potential_prop = mu_prop
    c = c
  [../]
  [./flux_x]
    type = CHSplitFlux
    variable = jx
    component = 0
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./flux_y]
    type = CHSplitFlux
    variable = jy
    component = 1
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
  [../]
[]

[AuxKernels]
  [./gb]
    type = FunctionAux
    variable = gb
    function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);v'
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    variable = creep_strain_xx
    rank_two_tensor = creep_strain
    index_i = 0
    index_j = 0
  [../]
  [./creep_strain_yy]
    type = RankTwoAux
    variable = creep_strain_yy
    rank_two_tensor = creep_strain
    index_i = 1
    index_j = 1
  [../]
  [./creep_strain_xy]
    type = RankTwoAux
    variable = creep_strain_xy
    rank_two_tensor = creep_strain
    index_i = 0
    index_j = 1
  [../]
  [./stress_xx]
    type = RankTwoAux
    variable = stress_xx
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
  [../]
  [./stress_xy]
    type = RankTwoAux
    variable = stress_xy
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
  [../]
[]

[Materials]
  [./chemical_potential]
    type = DerivativeParsedMaterial
    block = 0
    f_name = mu_prop
    args = c
    function = 'c'
    derivative_order = 1
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    function = 'c*(1.0-c)'
    args = c
    f_name = var_dep
    derivative_order = 1
  [../]
  [./mobility]
    type = CompositeMobilityTensor
    block = 0
    M_name = mobility_prop
    tensors = diffusivity
    weights = var_dep
    args = c
  [../]
  [./phase_normal]
    type = PhaseNormalTensor
    phase = gb
    normal_tensor_name = gb_normal
  [../]
  [./aniso_tensor]
    type = GBDependentAnisotropicTensor
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = aniso_tensor
  [../]
  [./diffusivity]
    type = GBDependentDiffusivity
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = diffusivity
  [../]
  [./diffuse_strain_increment]
    type = FluxBasedStrainIncrement
    xflux = jx
    yflux = jy
    gb = gb
    property_name = diffuse
  [../]
  [./gb_relax_prefactor]
    type = DerivativeParsedMaterial
    block = 0
    function = '0.01*(c-0.15)*gb'
    args = 'c gb'
    f_name = gb_relax_prefactor
    derivative_order = 1
  [../]
  [./gb_relax]
    type = GBRelaxationStrainIncrement
    property_name = gb_relax
    prefactor_name = gb_relax_prefactor
    gb_normal_name = gb_normal
  [../]
  [./creep_strain]
    type = SumTensorIncrements
    tensor_name = creep_strain
    coupled_tensor_increment_names = 'diffuse gb_relax'
  [../]
  [./strain]
   type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y'
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
    inelastic_strain_names = creep_strain
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
  [../]
[]

[BCs]
  [./Periodic]
    [./cbc]
      auto_direction = 'x y'
      variable = c
    [../]
  [../]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_rel_tol = 1e-10
  nl_max_its = 5

  l_tol = 1e-4
  l_max_its = 20

  dt = 1
  num_steps = 5
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/functional_expansion_tools/test/tests/standard_use/volume_coupling_custom_norm_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./empty]
  [../]
[]

[AuxVariables]
  [./s]
    order = FIRST
    family = LAGRANGE
  [../]
  [./m_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./null_kernel]
    type = NullKernel
    variable = empty
  [../]
[]

[AuxKernels]
  [./reconstruct_m_in]
    type = FunctionSeriesToAux
    function = FX_Basis_Value_Sub
    variable = m_in
  [../]
  [./calculate_s]
    type = ParsedAux
    variable = s
    args = m_in
    function = '2*exp(-m_in/0.8)'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
    generation_type = 'sqrt_mu'
    expansion_type = 'sqrt_mu'
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Sub
    variable = s
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

modules/phase_field/test/tests/free_energy_material/VanDerWaalsFreeEnergy.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  elem_type = QUAD4
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = x*0.4+0.001
    [../]
  [../]
  [./T]
    [./InitialCondition]
      type = FunctionIC
      function = y*1999+1
    [../]
  [../]
[]

[Materials]
  [./free_energy]
    type =  VanDerWaalsFreeEnergy
    f_name = Fgas
    m = 134 # Xenon
    a = 7.3138
    b = 84.77
    omega = 41
    c = c
    T = T
    outputs = exodus
  [../]
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/heat_convection/heat_convection_3d_tf_test.i

# Test cases for convective boundary conditions.
# Input file for htc_3dtest0

# TKLarson
# 11/02/11
# Revision 0
#
# Goals of this test are:
#  1) show that the 'fluid' temperature for convective boundary condition
#    is behaving as expected/desired
#  2) show that expected results ensue from application of convective boundary conditions
# Convective boundary condition:
#  q = h*A*(Tw - Tf)
#  where
#    q - heat transfer rate (w)
#    h - heat transfer coefficient (w/m^2-K)
#    A - surface area (m^2)
#    Tw - surface temperature (K)
#    Tf - fluid temperature adjacent to the surface (K)
# The heat transfer coefficient (h) is input as a variable called 'rate'
# Tf is a two valued function specified by 'initial' and 'final' along with a variable
#  called 'duration,' the length of time in seconds that it takes initial to linearly ramp
#  to 'final.'

# The mesh for this test case is concocted from an ASTM standard for the so-called Brazillian Cylinder test
# (ASTM International, Standard Test Method for Splitting Tensile Strength of Cylindrical Concrete
# Specimens, C 496/C 496M-04, 2004).  I turned a cylinder model into a rectangular parallelpiped,
# because I already had the cylinder model.
# The model is 3-d xyz coordinates.
#
# Brazillian Parallelpiped sample dimensions:
#       z = 10.3 cm, 0.103 m, (4 in)
#       y = 5.08 cm, 0.0508 m, (2 in)
#       x = 5.08 cm, 0.0508 m, (2 in)

# Material properties are:
#   density = 2405.28 km/m^3
#   specific heat = 826.4 J/kg-K
#   thermal conductivity 1.937 w/m-K
#  alpha (thermal conductivity/(density*specific heat) is then 9.74e-7 m^2/s
#
# Initial parallelpiped temperature is room temperature 294.26 K (70 F)
# The initial fluid temperature is room temperature. We will ramp it to 477.6 K (400 F) in 10 minutes.
# We will use a very large h (1000000) to make the surface temperature mimick the fluid temperature.

# What we expect for this problem:
#  1) Use of h = 1000000 should cause the parallelpiped surface temperature to track the fluid temperature
#  2) The fluid temperature should rise from initial (294.26 K) to final (477.6 K) in 600 s.
#  3) 1) and 2) should prove that the Tf boundary condition is ramping as desired.
# Note, we do the above because there is no way to plot a variable that is not on a mesh node!

[Mesh]    # Mesh Start
# 5cm x 5cm x 10cm parallelpiped not so detailed mesh, 4 elements each end, 8 elements each long face
# Only one block (Block 1), all concrete
# Sideset definitions:
#    1 - xy plane at z=0,
#    2 - xy plane at z=-0.103,
#    3 - xz plane at y=0,
#    4 - yz plane at x=0,
#    5 - xz plane at y=0.0508,
#    6 - yz plane at x=0.0508
  file = heat_convection_3d_mesh.e
#
[]    # Mesh END

[Variables]  # Variables Start
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 294.26 # Initial parallelpiped temperature
  [../]

[]    # Variables END


[Kernels]  # Kernels Start
  [./heat]
#    type = HeatConductionRZ
     type = HeatConduction
     variable = temp
  [../]

  [./heat_ie]
#  type = HeatConductionTimeDerivativeRZ
  type = HeatConductionTimeDerivative
  variable = temp
  [../]

[]    # Kernels END


[BCs]    # Boundary Conditions Start
# Heat transfer coefficient on outer parallelpiped radius and ends
  [./convective_clad_surface]    # Convective Start
#         type = ConvectiveFluxRZ  # Convective flux, e.g. q'' = h*(Tw - Tf)
         type = ConvectiveFluxBC  # Convective flux, e.g. q'' = h*(Tw - Tf)
         boundary = '1 2 3 4 5 6'  # BC applied on top, along length, and bottom
         variable = temp
   rate = 1000000.   # convective heat transfer coefficient (w/m^2-K)[176000 "]
#         #  the above h is ~ infinity for present purposes
         initial = 294.26         # initial ambient (lab or oven) temperature (K)
         final = 477.6            # final ambient (lab or oven) temperature (K)
   duration = 600.   # length of time in seconds that it takes the ambient
         #     temperature to ramp from initial to final
  [../]          # Convective End

[]    # BCs END

[Materials]    # Materials Start
  [./thermal]
    type = HeatConductionMaterial
    block = 1
    specific_heat = 826.4
    thermal_conductivity = 1.937  # this makes alpha 9.74e-7 m^2/s
  [../]
  [./density]
    type = Density
    block = 1
    density = 2405.28
  [../]
[]      # Materials END

[Executioner]    # Executioner Start
   type = Transient
#   type = Steady

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


   petsc_options = '-snes_ksp_ew '
   petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type'
   petsc_options_value = '70 hypre boomeramg'
   l_max_its = 60
   nl_rel_tol = 1e-8
   nl_abs_tol = 1e-10
   l_tol = 1e-5

   start_time = 0.0
  dt = 60.
  num_steps = 20  # Total run time 1200 s

[]      # Executioner END

[Outputs]    # Output Start
  # Output Start
  file_base = out_3d_tf
  exodus = true
[]      # Output END
#      # Input file END

modules/tensor_mechanics/test/tests/plane_stress/weak_plane_stress_elastic_jacobian.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  out_of_plane_strain = strain_zz
[]

[Mesh]
  file = square.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./strain_zz]
  [../]
[]

[Modules/TensorMechanics/Master]
  [plane_stress]
    planar_formulation = WEAK_PLANE_STRESS
    strain = SMALL
  []
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.0
    youngs_modulus = 1
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  petsc_options_iname = '-ksp_type -pc_type -snes_type'
  petsc_options_value = 'bcgs bjacobi test'

  end_time = 1.0
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_timoshenko_small.i

# Test for small strain Timoshenko beam vibration in y direction

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 2e4
# Shear modulus (G) = 1e4
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 1.0
# Iy = 1.0 = Iz
# Length (L)= 4 m
# density (rho) = 1.0

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 8
# Therefore, the beam behaves like a Timoshenko beam.

# The FEM solution for this beam with 100 elements give first natural period of 0.2731s with a time step of 0.005.
# The acceleration, velocity and displacement time histories obtained from MOOSE matches with those obtained from ABAQUS.

# Values from the first few time steps are as follows:
# time    disp_y                vel_y                 accel_y
# 0.0     0.0                   0.0                   0.0
# 0.005   2.5473249455812e-05   0.010189299782325     4.0757199129299
# 0.01    5.3012872677486e-05   0.00082654950634483  -7.8208200233219
# 0.015   5.8611622914354e-05   0.0014129505884026    8.055380456145
# 0.02    6.766113649781e-05    0.0022068548449798   -7.7378187535141
# 0.025   7.8981810558437e-05   0.0023214147792709    7.7836427272305

# Note that the theoretical first frequency of the beam using Euler-Bernoulli theory is:
# f1 = 1/(2 pi) * (3.5156/L^2) * sqrt(EI/rho) = 4.9455

# This implies that the corresponding time period of this beam (under Euler-Bernoulli assumption) is 0.2022s.

# This shows that Euler-Bernoulli beam theory under-predicts the time period of a thick beam. In other words, the Euler-Bernoulli beam theory predicts a more compliant beam than reality for a thick beam.

[Mesh]
  type = GeneratedMesh
  xmin = 0
  xmax = 4.0
  nx = 100
  dim = 1
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./rot_accel_x]
    type = NewmarkAccelAux
    variable = rot_accel_x
    displacement = rot_x
    velocity = rot_vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./rot_vel_x]
    type = NewmarkVelAux
    variable = rot_vel_x
    acceleration = rot_accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./rot_accel_y]
    type = NewmarkAccelAux
    variable = rot_accel_y
    displacement = rot_y
    velocity = rot_vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./rot_vel_y]
    type = NewmarkVelAux
    variable = rot_vel_y
    acceleration = rot_accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./rot_accel_z]
    type = NewmarkAccelAux
    variable = rot_accel_z
    displacement = rot_z
    velocity = rot_vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./rot_vel_z]
    type = NewmarkVelAux
    variable = rot_vel_z
    acceleration = rot_accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.005 0.01 1.0'
    y = '0.0 1.0  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_rel_tol = 1e-11
  nl_abs_tol = 1e-11
  start_time = 0.0
  dt = 0.005
  end_time = 0.5
  timestep_tolerance = 1e-6
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
  [./inertial_force_x]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 1.0
    Iy = 1.0
    Iz = 1.0
    Ay = 0.0
    Az = 0.0
    component = 0
    variable = disp_x
  [../]
  [./inertial_force_y]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 1.0
    Iy = 1.0
    Iz = 1.0
    Ay = 0.0
    Az = 0.0
    component = 1
    variable = disp_y
  [../]
  [./inertial_force_z]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 1.0
    Iy = 1.0
    Iz = 1.0
    Ay = 0.0
    Az = 0.0
    component = 2
    variable = disp_z
  [../]
  [./inertial_force_rot_x]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 1.0
    Iy = 1.0
    Iz = 1.0
    Ay = 0.0
    Az = 0.0
    component = 3
    variable = rot_x
  [../]
  [./inertial_force_rot_y]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 1.0
    Iy = 1.0
    Iz = 1.0
    Ay = 0.0
    Az = 0.0
    component = 4
    variable = rot_y
  [../]
  [./inertial_force_rot_z]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 1.0
    Iy = 1.0
    Iz = 1.0
    Ay = 0.0
    Az = 0.0
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 2e4
    poissons_ratio = 0.0
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 1.0
    Ay = 0.0
    Az = 0.0
    Iy = 1.0
    Iz = 1.0
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1.0'
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform_inclined2.i

# Plastic deformation, tensile failure, with normal=(1,0,0)
# With Lame lambda=0 and Lame mu=1, applying the following
# deformation to the zmax surface of a unit cube:
# disp_x = t
# should yield trial stress:
# stress_xx = 2*t
# Use tensile strength = 1, we should return to stress_xx = 1
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = right
    function = t
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = right
    function = 0
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = right
    function = 0
  [../]
[]

[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 30
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 40
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakInclinedPlaneStressUpdate
    normal_vector = '1 0 0'
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 2
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform_inclined2
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_2/plane2_template2_sm.i

[Mesh]
  file = plane2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 200
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_x = diag_saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/tensor_mechanics/test/tests/initial_stress/except01.i

# Exception test: the incorrect number of initial stress functions are supplied

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -10
  zmax = 0
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1 0 1'
    eigenstrain_name = ini_stress
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]


[Executioner]
  num_steps = 1
  solve_type = NEWTON
  type = Transient
[]

test/tests/nodalkernels/constant_rate/constant_rate.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./nodal_ode]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[NodalKernels]
  [./td]
    type = TimeDerivativeNodalKernel
    variable = nodal_ode
  [../]
  [./constant_rate]
    type = ConstantRate
    variable = nodal_ode
    rate = 1.0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/normalized_penalty/sm/normalized_penalty_kin_Q8_sm.i

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  order = SECOND
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Mesh]
  file = normalized_penalty_Q8.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Functions]
  [./left_x]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 0.02 0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    extra_vector_tags = 'ref'
  [../]
[]

[Contact]
  [./m3_s2]
    master = 3
    slave = 2
    penalty = 1e10
    normalize_penalty = true
    tangential_tolerance = 1e-3
    system = Constraint
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./left_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = left_x
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2 3 4'
    value = 0.0
  [../]

  [./right]
    type = DirichletBC
    variable = disp_x
    boundary = '3 4'
    value = 0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = '1 2 3 4 1000'

    youngs_modulus = 3e8
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-12
  nl_abs_tol = 5e-8

  l_max_its = 100
  nl_max_its = 15
  dt = 0.5
  num_steps = 4
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/examples/tutorial/01.i

# Darcy flow
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
    input = annular
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
  [../]
[]

[PorousFlowBasicTHM]
  porepressure = porepressure
  coupling_type = Hydro
  gravity = '0 0 0'
  fp = the_simple_fluid
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1E6
    boundary = injection_area
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      viscosity = 1.0E-3
      density0 = 1000.0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.8
    solid_bulk_compliance = 2E-7
    fluid_bulk_modulus = 1E7
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1E-14 0 0   0 1E-14 0   0 0 1E-14'
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityConst
    block = caps
    permeability = '1E-15 0 0   0 1E-15 0   0 0 1E-16'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E5
  nl_abs_tol = 1E-13
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/restart_multilevel/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  ymin = 0
  xmax = 1
  ymax = 1
  nx = 10
  ny = 10
[]

[Functions]
  [./v_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./ufn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = v_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
  checkpoint = true
[]

[MultiApps]
  [./sub_app]
    app_type = MooseTestApp
    type = TransientMultiApp
    input_files = 'sub.i'
    execute_on = timestep_end
    positions = '0 -1 0'
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub_app
    source_variable = u
    variable = v
  [../]
[]

modules/tensor_mechanics/test/tests/capped_drucker_prager/small_deform2_native.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1.5E-6*x+2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    mc_interpolation_scheme = native
    internal_constraint_tolerance = 1 # irrelevant here
    yield_function_tolerance = 1      # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = cdp
    perform_finite_strain_rotations = false
  [../]
  [./cdp]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-8
    tip_smoother = 4
    smoothing_tol = 1E-5
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_native
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/outputs/displacement/displacement_transient_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 5
  ny = 5
  elem_type = QUAD4

  displacements = 'u v'
[]

[Functions]
  [./right_u]
    type = ParsedFunction
    value = 0.1*t
  [../]

  [./fn_v]
    type = ParsedFunction
    value = (x+1)*y*0.1*t
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./td_u]
    type = TimeDerivative
    variable = u
  [../]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./td_v]
    type = TimeDerivative
    variable = v
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]
  [./right_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 1
    function = right_u
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '0 2'
    function = fn_v
  [../]
[]

[Executioner]
  type = Transient

  dt = 0.1
  start_time = 0
  num_steps = 10


  solve_type = 'PJFNK'
[]

[Outputs]
  [./out_displaced]
    type = Exodus
    use_displaced = true
  [../]
[]

modules/tensor_mechanics/test/tests/global_strain/global_strain_pressure_3D.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 2
    ny = 2
    nz = 2
    xmin = -0.5
    xmax = 0.5
    ymin = -0.5
    ymax = 0.5
    zmin = -0.5
    zmax = 0.5
  []
  [cnode]
    type = ExtraNodesetGenerator
    coord = '0.0 0.0 0.0'
    new_boundary = 100
    input = generated_mesh
  []
[]

[Variables]
  [./u_x]
  [../]
  [./u_y]
  [../]
  [./u_z]
  [../]
  [./global_strain]
    order = SIXTH
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./s00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./s11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e11]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = GlobalDisplacementAux
    variable = disp_x
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 0
  [../]
  [./disp_y]
    type = GlobalDisplacementAux
    variable = disp_y
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 1
  [../]
  [./disp_z]
    type = GlobalDisplacementAux
    variable = disp_z
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 2
  [../]
  [./s00]
    type = RankTwoAux
    variable = s00
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./s11]
    type = RankTwoAux
    variable = s11
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
  [../]
  [./e00]
    type = RankTwoAux
    variable = e00
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 0
  [../]
  [./e11]
    type = RankTwoAux
    variable = e11
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
  [../]
[]

[GlobalParams]
  displacements = 'u_x u_y u_z'
  block = 0
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[ScalarKernels]
  [./global_strain]
    type = GlobalStrain
    variable = global_strain
    global_strain_uo = global_strain_uo
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x z'
      variable = ' u_x u_y u_z'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = u_x
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    boundary = 100
    variable = u_y
    value = 0
  [../]
  [./centerfix_z]
    type = DirichletBC
    boundary = 100
    variable = u_z
    value = 0
  [../]
  [./Pressure]
    [./top]
      boundary = top
      function = 0.3
    [../]
    [./bottom]
      boundary = bottom
      function = 0.3
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '7 0.33'
    fill_method = symmetric_isotropic_E_nu
  [../]
  [./strain]
    type = ComputeSmallStrain
    global_strain = global_strain
  [../]
  [./global_strain]
    type = ComputeGlobalStrain
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[UserObjects]
  [./global_strain_uo]
    type = GlobalStrainUserObject
    execute_on = 'Initial Linear Nonlinear'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  line_search = basic

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  l_max_its = 30
  nl_max_its = 12

  l_tol = 1.0e-4

  nl_rel_tol = 1.0e-6
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

test/tests/userobjects/toggle_mesh_adaptivity/toggle_mesh_adaptivity_gaussian_ic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./gaussian_ic]
    type = FunctionIC
    variable = u
    function = gaussian_2d
  [../]
[]

[Functions]
  [./gaussian_2d]
    type = ParsedFunction
    value = exp(-((x-x0)*(x-x0)+(y-y0)*(y-y0))/2.0/sigma/sigma)
    vars = 'sigma x0 y0'
    vals = '0.05 0.35 0.25'
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.02
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  initial_steps = 1
  initial_marker = marker
  cycles_per_step = 1
  marker = marker
  max_h_level = 2
  [./Markers]
    [./marker]
      type = CircleMarker
      point = '0.35 0.25 0'
      radius = 0.2
      inside = refine
      outside = coarsen
    [../]
  [../]
[]

[UserObjects]
  [./mesh_adaptivity_off]
    type = ToggleMeshAdaptivity
    mesh_adaptivity = 'off'
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    print_mesh_changed_info = true
  [../]
[]

modules/tensor_mechanics/test/tests/multiple_two_parameter_plasticity/dp_then_wp.i

# Use ComputeMultipleInelasticStress with two inelastic models: CappedDruckerPrager and CappedWeakPlane.
# The relative_tolerance and absolute_tolerance parameters are set very large so that
# only one iteration is performed.  This is the algorithm that FLAC uses to model
# jointed rocks, only Capped-Mohr-Coulomb is used instead of CappedDruckerPrager
#
# initial_stress = diag(1E3, 1E3, 1E3)
# The CappedDruckerPrager has tensile strength 3E2 and large cohesion,
# so the stress initially returns to diag(1E2, 1E2, 1E2)
# The CappedWeakPlane has tensile strength zero and large cohesion,
# so the stress returns to diag(1E2 - v/(1-v)*1E2, 1E2 - v/(1-v)*1E2, 0)
# where v=0.2 is the Poisson's ratio

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    eigenstrain_names = ini_stress
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = 0
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = 0
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = 0
  [../]
[]

[AuxVariables]
  [./yield_fcn_dp]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn_wp]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_dp_auxk]
    type = MaterialStdVectorAux
    index = 1    # this is the tensile yield function - it should be zero
    property = cdp_plastic_yield_function
    variable = yield_fcn_dp
  [../]
  [./yield_fcn_wp_auxk]
    type = MaterialStdVectorAux
    index = 1    # this is the tensile yield function - it should be zero
    property = cwp_plastic_yield_function
    variable = yield_fcn_wp
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f_dp]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn_dp
  [../]
  [./f_wp]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn_wp
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 300
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    internal_constraint_tolerance = 1 # irrelevant here
    yield_function_tolerance = 1      # irrelevant here
  [../]
  [./wp_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
  [./wp_tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./wp_tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./wp_t_strength]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./wp_c_strength]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.2
    youngs_modulus = 1E7
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1E3 0 0  0 1E3 0  0 0 1E3'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    relative_tolerance = 1E4
    absolute_tolerance = 2
    inelastic_models = 'cdp cwp'
    perform_finite_strain_rotations = false
  [../]
  [./cdp]
    type = CappedDruckerPragerStressUpdate
    base_name = cdp
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-5
    tip_smoother = 1E3
    smoothing_tol = 1E3
  [../]
  [./cwp]
    type = CappedWeakPlaneStressUpdate
    base_name = cwp
    cohesion = wp_coh
    tan_friction_angle = wp_tanphi
    tan_dilation_angle = wp_tanpsi
    tensile_strength = wp_t_strength
    compressive_strength = wp_c_strength
    tip_smoother = 1E3
    smoothing_tol = 1E3
    yield_function_tol = 1E-5
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = dp_then_wp
  csv = true
[]

modules/tensor_mechanics/test/tests/torque_reaction/disp_about_axis_errors.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1.
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type =  RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = VonMisesStress
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]

  [./top_x]
    type = DisplacementAboutAxis
    boundary = top
    function = rampConstant
    angle_units = degrees
    axis_origin = '0. 0. 0.'
    axis_direction = '0. 0. 1.'
    component = 0
    variable = disp_x
  [../]

  [./top_y]
    type = DisplacementAboutAxis
    boundary = top
    function = rampConstant
    angle_units = degrees
    axis_origin = '0. 0. 0.'
    variable = disp_y
  [../]

[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]


[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-8

  start_time = 0.0
  dt = 0.1
  dtmin = 0.1 # die instead of cutting the timestep

  end_time = 0.5
[]


[Outputs]
  file_base = disp_about_axis_errors_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_3d_points.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack3d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  crack_front_points = '0 -10 .5
                        0 -10 0
                        0 -10 -.5'
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]


[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = j_integral_3d_points_out
  exodus = true
  csv = true
[]

modules/combined/test/tests/elastic_patch/ad_elastic_patch_rspherical.i

#
# Patch test for 1D spherical elements
#
# The 1D mesh is pinned at x=0.  The displacement at the outer node is set to
#   3e-3*X where X is the x-coordinate of that node.  That gives a strain of
#   3e-3 for the x, y, and z directions.
#
# Young's modulus is 1e6, and Poisson's ratio is 0.25.  This gives:
#
# Stress xx, yy, zz = E/(1+nu)/(1-2nu)*strain*((1-nu) + nu + nu) = 6000
#

[GlobalParams]
  displacements = 'disp_x'
  temperature = temp
[]

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]
  file = elastic_patch_rspherical.e
[]

[Variables]
  [./disp_x]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules/TensorMechanics/Master/All]
  strain = SMALL
  incremental = true
  add_variables = true
  generate_output = 'stress_xx stress_yy stress_zz'
[]

[Kernels]
  [./heat]
    type = TimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '1 2'
    function = '3e-3*x'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]
[]

[Materials]
  [./density]
    type = ADDensity
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

test/tests/materials/stateful_coupling/stateful_aux.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./aux]
    order = FIRST
    family = LAGRANGE
    initial_condition = 2
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]

  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]


[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 'left'
    value = 1
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 2
  [../]
[]

[Materials]
  # This material couples to an aux variable and
  # uses it in stateful property initialization
  [./stateful_mat]
    type = StatefulTest
    coupled = aux
    prop_names = thermal_conductivity
    prop_values = -1 # ignored
    output_properties = thermal_conductivity
    outputs = exodus
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
[]

[Outputs]
  exodus = true
[]

[Debug]
  show_material_props = true
[]

modules/richards/test/tests/theis/th01.i

# fully-saturated
# production
[Mesh]
  type = FileMesh
  file = th01_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '0.5 1 2 10'
    x = '0 1 10 100'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]

  [./total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsPolyLineSink
    pressures = '-1E9 1E9'
    fluxes = '200 200'
    point_file = th01.points
    SumQuantityUO = total_outflow_mass
    variable = pressure
  [../]
[]


[Postprocessors]
  [./flow_report]
    type = RichardsPlotQuantity
    uo = total_outflow_mass
  [../]
  [./p50]
    type = PointValue
    variable = pressure
    point = '50 0 0'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E5
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-6 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 100
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = th01
  csv = true
[]

modules/tensor_mechanics/test/tests/tensile/small_deform6_update_version.i

# checking for small deformation
# A single element is incrementally stretched in the in the z direction
# This causes the return direction to be along the hypersurface sigma_II = sigma_III,
# and the resulting stresses are checked to lie on the expected yield surface

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '4*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = 'y*(t-0.5)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = 'z*(t-0.5)'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0'
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 0.1
  type = Transient
[]


[Outputs]
  file_base = small_deform6_update_version
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/gravity/gravity_rz_quad8.i

# Gravity Test
#
# This test is designed to exercise the gravity body force rz kernel.
#
# The mesh for this problem is a rectangle 10 units by 1 unit.
#
# The boundary conditions for this problem are as follows.  The
#   displacement is zero at the top.  The acceleration of gravity is 20.
#
# The material has a Young's modulus of 1e6 and a density of 2.
#
# The analytic solution for the displacement along the bar is:
#
# u(y) = -b*y^2/(2*E)+b*L*y/E
#
# The displacement at y=L is b*L^2/(2*E) = 2*20*10*10/(2*1e6) = 0.002.
#
# The analytic solution for the stress along the bar assuming linear
#   elasticity is:
#
# S(y) = b*(L-y)
#
# The stress at x=0 is b*L = 2*20*10 = 400.
#
# Note:  The simulation does not measure stress at y=0.  The stress
#   is reported at element centers.  The element closest to y=0 sits
#   at y = 1/4 and has a stress of 390.  This matches the linear
#   stress distribution that is expected.  The same situation applies
#   at y = L where the stress is zero analytically.  The nearest
#   element is at y=9.75 where the stress is 10.
#
[GlobalParams]
  displacements = 'disp_x disp_y'
  order = SECOND
  family = LAGRANGE
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = gravity_rz_quad8_test.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  add_variables = true
  generate_output = 'stress_xx stress_yy stress_xy'
[]

[Kernels]
  [./gravity]
    type = Gravity
    variable = disp_y
    value = 20
  [../]
[]

[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    shear_modulus = 0.5e6
    lambda = 0.0
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./density]
    type = Density
    density = 2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = gravity_rz_quad8_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/frictionless_lm.i

[Mesh]
  patch_size = 80
  [file]
    type = FileMeshGenerator
    file = sliding_elastic_blocks_2d.e
  []
  [slave]
    input = file
    type = LowerDBlockFromSidesetGenerator
    sidesets = '3'
    new_block_id = '30'
  []
  [master]
    input = slave
    type = LowerDBlockFromSidesetGenerator
    sidesets = '2'
    new_block_id = '20'
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    block = '1 2'
  [../]
[]

[Variables]
  [normal_lm]
    block = '30'
  []
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -snes_ksp_ew'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 15
  dt = 0.1
  dtmin = 0.01
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
  timestep_tolerance = 1e-6
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  sync_times = '1 2 3 4 5 6 7 8 9 10 11 12 13 14 15'
  [out]
    type = Exodus
    sync_only = true
  []
  [dof]
    execute_on = 'initial'
    type = DOFMap
  []
  [csv]
    type = CSV
    execute_on = 'nonlinear timestep_end'
  []
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = 3
    master = 2
    variable = normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = min
    use_displaced_mesh = true
  [../]
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '3'
    master_subdomain = '20'
    slave_subdomain = '30'
    variable = normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '3'
    master_subdomain = '20'
    slave_subdomain = '30'
    variable = normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [lin]
    type = NumLinearIterations
  []
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '30'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/tensor_mechanics/test/tests/generalized_plane_strain/out_of_plane_pressure.i

# Tests for application of out-of-plane pressure in generalized plane strain.

[Mesh]
  file = square.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./saved_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./GeneralizedPlaneStrain]
      [./gps]
        use_displaced_mesh = true
        displacements = 'disp_x disp_y'
        scalar_out_of_plane_strain = scalar_strain_zz
        out_of_plane_pressure = traction_function
        factor = 1e5
      [../]
    [../]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = false
    displacements = 'disp_x disp_y'
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]

  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Functions]
  [./traction_function]
    type = PiecewiseLinear
    x = '0  2'
    y = '0  1'
  [../]
[]

[BCs]
  [./leftx]
    type = DirichletBC
    boundary = 4
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./strain]
    type = ComputePlaneSmallStrain
    displacements = 'disp_x disp_y'
    scalar_out_of_plane_strain = scalar_strain_zz
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-11

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform_hard1.i

# apply uniform stretches in x, y and z directions.
# let mc_cohesion = 10, mc_cohesion_residual = 2, mc_cohesion_rate =
# With cohesion = C, friction_angle = 60deg, tip_smoother = 4, the
# algorithm should return to
# sigma_m = (C*Cos(60) - 4)/Sin(60)
# This allows checking of the relationship for C

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 10
    value_residual = 2
    rate = 1E4
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '10 1 2 1 10 3 2 3 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1E-4
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-8
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard1
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/mortar_tm/2drz/frictionless_second/finite_rr.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_rr'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
    extra_vector_tags = 'ref'
  [../]
  [./plank]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
    extra_vector_tags = 'ref'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
  nl_abs_tol = 1e-12
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

test/tests/postprocessors/old_older_values/old_value.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./grow]
    type = TestPostprocessor
    execute_on = 'initial timestep_end'
    test_type = 'grow'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/rk-2/2d-quadratic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 20
  ny = 20
  elem_type = QUAD9
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*((x*x)+(y*y))-(4*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*((x*x)+(y*y))
  [../]
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
    implicit = true
  [../]

  [./diff]
    type = Diffusion
    variable = u
    implicit = false
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
    implicit = false
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  [./TimeIntegrator]
    type = ExplicitMidpoint
  [../]
  solve_type = 'LINEAR'

  start_time = 0.0
  num_steps = 10
  dt = 0.0001
  l_tol = 1e-8
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/generalized_plane_strain/generalized_plane_strain_finite.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  block = 1
[]

[Mesh]
  file = square.e
[]

[Variables]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy strain_zz'
    planar_formulation = GENERALIZED_PLANE_STRAIN
    eigenstrain_names = eigenstrain
    scalar_out_of_plane_strain = scalar_strain_zz
    temperature = temp
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/actions/addmaterials2.i

# Test that the PorousFlowAddMaterialAction correctly handles the case where
# the at_nodes parameter isn't provided. In this case, only a single material
# is given, and the action must correctly identify if materials should be added
# at the nodes, qps, or even both

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pwater]
    initial_condition = 1e6
  [../]
  [./sgas]
    initial_condition = 0.3
  [../]
  [./temperature]
    initial_condition = 50
  [../]
[]

[AuxVariables]
  [./x0]
    initial_condition = 0.1
  [../]
  [./x1]
    initial_condition = 0.5
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pwater
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sgas
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pwater
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = sgas
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temperature
  [../]
  [./heat_advection]
    type = PorousFlowHeatAdvection
    variable = temperature
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pwater sgas temperature'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-5
    pc_max = 1e7
    sat_lr = 0.1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
      cv = 2
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1e9
      viscosity = 1e-4
      density0 = 20
      thermal_expansion = 0
      cv = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = pwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'x0 x1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.11
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
    s_res = 0.01
    sum_s_res = 0.11
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.0
    density = 125
  [../]
  [./unused]
    type = GenericConstantMaterial
    prop_names = unused
    prop_values = 0
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
  nl_abs_tol = 1e-14
[]

modules/functional_expansion_tools/test/tests/standard_use/volume_coupling_custom_norm.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = Diffusion
    variable = m
  [../]
  [./time_diff_m]
    type = TimeDerivative
    variable = m
  [../]
  [./s_in]
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'left right'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
    generation_type = 'sqrt_mu'
    expansion_type = 'sqrt_mu'
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
  file_base = 'volume_coupled_out'
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = volume_coupling_custom_norm_sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

test/tests/time_steppers/timesequence_stepper/timesequence.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax =  1
  ymin = -1
  ymax =  1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  end_time = 4.0
  [./TimeStepper]
    type = TimeSequenceStepper
    time_sequence  = '0   0.85 1.3 2 4'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/small_deform_harden1.i

# apply repeated stretches to observe cohesion hardening
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = x_disp
    boundary = front
    function = '0'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = y_disp
    boundary = front
    function = '0'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = front
    function = '2*t'
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wps_internal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./wps_internal_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = wps_internal
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./int]
    type = PointValue
    point = '0 0 0'
    variable = wps_internal
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1E3
    value_residual = 2E3
    rate = 4E4
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 1.0
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.01745506
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 500
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 0.5E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-3
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1E-6
  dt = 1E-7
  type = Transient
[]


[Outputs]
  file_base = small_deform_harden1
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/truss/truss_plastic.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  elem_type = EDGE
  nx = 1
[]

[GlobalParams]
  displacements = 'disp_x'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
 [./axial_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_over_l]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./area]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./react_x]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./hf]
    type = PiecewiseLinear
    x = '0    0.0001  0.0003  0.0023'
    y = '50e6 52e6    54e6    56e6'
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./load]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = right
    function = 't'
  [../]
[]

[AuxKernels]
  [./axial_stress]
    type = MaterialRealAux
    property = axial_stress
    variable = axial_stress
  [../]
  [./e_over_l]
    type = MaterialRealAux
    property = e_over_l
    variable = e_over_l
  [../]
  [./area]
    type = ConstantAux
    variable = area
    value = 1.0
    execute_on = 'initial timestep_begin'
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = ElementIntegralMaterialProperty
    mat_prop = axial_stress
  [../]
  [./e_xx]
    type = ElementIntegralMaterialProperty
    mat_prop = total_stretch
  [../]
  [./ee_xx]
    type = ElementIntegralMaterialProperty
    mat_prop = elastic_stretch
  [../]
  [./ep_xx]
    type = ElementIntegralMaterialProperty
    mat_prop = plastic_stretch
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
  nl_abs_tol = 1e-11
  l_max_its = 20
  dt = 5e-5
  num_steps = 10
[]

[Kernels]
  [./solid]
    type = StressDivergenceTensorsTruss
    component = 0
    variable = disp_x
    area = area
    save_in = react_x
  [../]
[]

[Materials]
  [./truss]
    type = PlasticTruss
    youngs_modulus = 2.0e11
    yield_stress = 500e5
    outputs = exodus
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/functional_expansion_tools/examples/2D_interface/sub.i

# Basic example coupling a master and sub app at an interface in a 2D model.
# The master app provides a flux term to the sub app via Functional Expansions, which then performs
# its calculations.  The sub app's interface conditions, both value and flux, are transferred back
# to the master app
[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0.4
  xmax = 2.4
  nx = 30
  ymin = 0.0
  ymax = 10.0
  ny = 20
[]

[Variables]
  [./s]
  [../]
[]

[Kernels]
  [./diff_s]
    type = HeatConduction
    variable = s
  [../]
  [./time_diff_s]
    type = HeatConductionTimeDerivative
    variable = s
  [../]
[]

[Materials]
  [./Unobtanium]
    type = GenericConstantMaterial
    prop_names =  'thermal_conductivity specific_heat density'
    prop_values = '1.0                  1.0           1.0' # W/(cm K), J/(g K), g/cm^3
  [../]
[]

[ICs]
  [./start_s]
    type = ConstantIC
    value = 2
    variable = s
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = s
    boundary = bottom
    value = 0.1
  [../]
  [./interface_flux]
    type = FXFluxBC
    boundary = left
    variable = s
    function = FX_Basis_Flux_Sub
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '4'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
  [./FX_Basis_Flux_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '5'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXBoundaryValueUserObject
    function = FX_Basis_Value_Sub
    variable = s
    boundary = left
  [../]
  [./FX_Flux_UserObject_Sub]
    type = FXBoundaryFluxUserObject
    function = FX_Basis_Flux_Sub
    variable = s
    boundary = left
    diffusivity = thermal_conductivity
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1.0
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

modules/xfem/test/tests/moment_fitting/diffusion_moment_fitting_six_points.i

# Test for a diffusion problem which uses six points moment_fitting approach.
# To use six points rule, add Quadrature block with order = FOURTH and type = MONOMIAL.
# See this paper (https://doi.org/10.1007/s00466-018-1544-2) for more details about moment_fitting approach.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 6
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  geometric_cut_userobjects = 'line_seg_cut_uo'
  qrule = moment_fitting
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 3
    function = u_left
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  [./Quadrature]
    order = FOURTH
    type = MONOMIAL
  [../]

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/multiapps/time_offset/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1 # This will be constrained by the master solve

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/except6.i

# Plastic deformation, tensile failure, with normal=(1,0,0)
# With Lame lambda=0 and Lame mu=1, applying the following
# deformation to the zmax surface of a unit cube:
# disp_x = t
# should yield trial stress:
# stress_xx = 2*t
# Use tensile strength = 1, we should return to stress_xx = 1
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = right
    function = t
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = right
    function = 0
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = right
    function = 0
  [../]
[]

[AuxVariables]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
  [./straint_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xx
    index_i = 0
    index_j = 0
  [../]
  [./straint_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xy
    index_i = 0
    index_j = 1
  [../]
  [./straint_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xz
    index_i = 0
    index_j = 2
  [../]
  [./straint_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yy
    index_i = 1
    index_j = 1
  [../]
  [./straint_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yz
    index_i = 1
    index_j = 2
  [../]
  [./straint_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zz
    index_i = 2
    index_j = 2
  [../]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = straint_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = straint_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = straint_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = straint_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = straint_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = straint_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 30
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 40
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakInclinedPlaneStressUpdate
    normal_vector = '0 0 0'
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 2
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = except6
  csv = true
[]

test/tests/functions/solution_function/solution_function_scale_transl.i

# checking scale and translation, with ordering scale first, then translation second
[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = -1
  xmax = 1
  nx = 3
  ymin = -1
  ymax = 1
  ny = 3
  zmin = -1
  zmax = 1
  nz = 3
[]

[UserObjects]
  [./solution_uo]
    type = SolutionUserObject
    mesh = cube_with_u_equals_x.e
    timestep = 1
    system_variables = u
    scale = '0.5 1 1'
    translation = '2 0 0'
    transformation_order = 'scale translation'
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = solution_fcn
  [../]
[]

[Functions]
  [./solution_fcn]
    type = SolutionFunction
    from_variable = u
    solution = solution_uo
  [../]
[]

[Kernels]
  [./diff]
    type = TimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 1
  end_time = 1
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = solution_function_scale_transl
  exodus = true
[]

modules/functional_expansion_tools/test/tests/errors/multiapp_missing_local_object.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = Diffusion
    variable = m
  [../]
  [./time_diff_m]
    type = TimeDerivative
    variable = m
  [../]
  [./s_in]
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'left right'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = multiapp_sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

modules/combined/test/tests/fieldsplit_contact/2blocks3d.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = 2blocks3d.e
  patch_size = 5
[]

[Problem]
  error_on_jacobian_nonzero_reallocation = true
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
  [../]
[]

[AuxVariables]
  [./penetration]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./horizontal_movement]
    type = ParsedFunction
    value = t/10.0
  [../]
[]

[AuxKernels]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 2
    paired_boundary = 3
    order = FIRST
  [../]
[]

[BCs]
  [./push_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = horizontal_movement
  [../]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 4'
    value = 0.0
  [../]
  [./fix_z]
    type = DirichletBC
    variable = disp_z
    boundary = '1 4'
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor_left]
    type = ComputeIsotropicElasticityTensor
    block = 1
    youngs_modulus = 1.0e6
    poissons_ratio = 0.3
  [../]
  [./stress_left]
    type = ComputeFiniteStrainElasticStress
    block = 1
  [../]

  [./elasticity_tensor_right]
    type = ComputeIsotropicElasticityTensor
    block = 2
    youngs_modulus = 1.0e6
    poissons_ratio = 0.3
  [../]
  [./stress_right]
    type = ComputeFiniteStrainElasticStress
    block = 2
  [../]
[]

[Contact]
  [./leftright]
    slave = 2
    master = 3
    model = frictionless
    penalty = 1e+6
    normalize_penalty = true
    formulation = kinematic
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

[Preconditioning]
  [./FSP]
    type = FSP
    # It is the starting point of splitting
    topsplit = 'contact_interior' # 'contact_interior' should match the following block name
    [./contact_interior]
      splitting          = 'contact interior'
      splitting_type     = multiplicative
    [../]
    [./interior]
      type = ContactSplit
      vars = 'disp_x disp_y disp_z'
      uncontact_master   = '3'
      uncontact_slave    = '2'
      uncontact_displaced = '1'
      blocks              = '1 2'
      include_all_contact_nodes = 1
      petsc_options_iname = '-ksp_type -ksp_max_it -ksp_rtol -ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter -pc_hypre_strong_threshold'
      petsc_options_value = ' preonly 10 1e-4 201                hypre    boomeramg      1                            0.25'
    [../]
    [./contact]
      type = ContactSplit
      vars = 'disp_x disp_y disp_z'
      contact_master   = '3'
      contact_slave    = '2'
      contact_displaced = '1'
      include_all_contact_nodes = 1
      petsc_options_iname = '-ksp_type -ksp_max_it -pc_type -pc_asm_overlap -sub_pc_type   -pc_factor_levels'
      petsc_options_value = '  preonly 10 asm  1 lu 0'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  dt = 0.1
  dtmin = 0.1
  end_time = 0.1

  l_tol = 1e-4
  l_max_its = 100

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  nl_max_its = 100
[]

[Outputs]
  file_base = 2blocks3d_out
  [./exodus]
    type = Exodus
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

test/tests/transfers/multiapp_postprocessor_to_scalar/master2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_sub_app]
    order = THIRD
    family = SCALAR
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.01
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
  [./point_value_0]
    type = ScalarVariable
    variable = from_sub_app
    component = 0
  [../]
  [./point_value_1]
    type = ScalarVariable
    variable = from_sub_app
    component = 1
  [../]
  [./point_value_2]
    type = ScalarVariable
    variable = from_sub_app
    component = 2
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
  hide = from_sub_app
[]

[MultiApps]
  [./pp_sub]
    app_type = MooseTestApp
    positions = '0.5 0.5 0
                 0.7 0.7 0
                 0.8 0.8 0'
    execute_on = timestep_end
    type = TransientMultiApp
    input_files = sub2.i
  [../]
[]

[Transfers]
  [./pp_transfer]
    type = MultiAppPostprocessorToAuxScalarTransfer
    direction = from_multiapp
    multi_app = pp_sub
    from_postprocessor = point_value
    to_aux_scalar = from_sub_app
  [../]
[]

modules/tensor_mechanics/test/tests/domain_integral_thermal/j_integral_2d_inst_ctefunc.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack2d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*x/504)
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '-10 -10
                10  10'
    scale_factor = 1e-6
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  temperature = temp
  incremental = true
  eigenstrain_names = thermal_expansion
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
    eigenstrain_names = thermal_expansion
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 400
    value = 0.0
  [../]

  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = 900
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeInstantaneousThermalExpansionFunctionEigenstrain
    block = 1
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 40

  nl_rel_step_tol= 1e-10
  nl_rel_tol = 1e-10

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  csv = true
  execute_on = 'timestep_end'
[]

[Preconditioning]
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

modules/xfem/test/tests/second_order_elements/diffusion_2d_quad9_test.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD9
[]

[XFEM]
  cut_data = '0.35 1.0 0.35 0.4 0 0'
  qrule = volfrac
  output_cut_plane = true
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 3
    function = u_left
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/phase_field/test/tests/conserved_noise/integral.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 10.0
  ymin = 0.0
  ymax = 10.0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.9
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Preconditioning]
  active = 'SMP'
  [./SMP]
   type = SMP
   off_diag_row = 'w c'
   off_diag_column = 'c w'
  [../]
[]

[Kernels]
  [./cres]
    type = SplitCHMath
    variable = c
    kappa_name = kappa_c
    w = w
  [../]

  [./wres]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]

  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]

  [./conserved_langevin]
    type = ConservedLangevinNoise
    amplitude = 0.5
    variable = w
    noise = uniform_noise
  []
[]

[BCs]
  [./Periodic]
    [./all]
      variable = 'c w'
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 2.0'
  [../]
[]

[UserObjects]
  [./uniform_noise]
    type = ConservedUniformNoise
  [../]
[]

[Postprocessors]
  [./total_c]
    type = ElementIntegralVariablePostprocessor
    execute_on = 'initial timestep_end'
    variable = c
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  l_max_its = 30
  l_tol = 1.0e-3

  nl_max_its = 30
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  dt = 10.0
  num_steps = 10
[]

[Outputs]
  file_base = integral
  csv = true
  console = true
[]

modules/tensor_mechanics/test/tests/tensile/small_deform3_update_version.i

# Using TensileStressUpdate
# checking for small deformation
# A single element is stretched by "ep" in the z and x directions
# This causes the return direction to be along the hypersurface sigma_I = sigma_II
# where sigma_I = (E_2222 + E_2200) * ep
# tensile_strength is set to 1Pa, smoothing_tol = 0.1Pa
# The smoothed yield function is
# yf = sigma_I + ismoother(0) - tensile_strength
#    = sigma_I + (0.5 * smoothing_tol - smoothing_tol / Pi) - tensile_strength
#    = sigma_I - 0.98183
#
# With zero Poisson's ratio, the return stress will be
# stress_00 = stress_22 = 0.98183
# with all other stress components being zero

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.25E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.25E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3_update_version
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/phase_field/test/tests/rigidbodymotion/grain_maskedforce.i

# test file for showing pinning of grains
[GlobalParams]
  var_name_base = eta
  op_num = 2
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 15
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SpecifiedSmoothCircleIC
      invalue = 1.0
      outvalue = 0.1
      int_width = 4.0
      x_positions = '20.0 30.0 '
      z_positions = '0.0 0.0 '
      y_positions = '0.0 25.0 '
      radii = '10.0 10.0'
      3D_spheres = false
      variable = c
      block = 0
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    type = MultiGrainRigidBodyMotion
    c = c
    variable = w
    v = 'eta0 eta1'
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '5.0  2.0      0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    block = 0
    f_name = F
    args = c
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
    derivative_order = 2
  [../]
[]

[AuxVariables]
  [./eta0]
  [../]
  [./eta1]
  [../]
  [./bnds]
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    var_name_base = eta
    op_num = 2
    v = 'eta0 eta1'
    block = 0
  [../]
[]

[ICs]
  [./ic_eta0]
    int_width = 4.0
    x1 = 20.0
    y1 = 0.0
    radius = 10.0
    outvalue = 0.0
    variable = eta0
    invalue = 1.0
    type = SmoothCircleIC
  [../]
  [./IC_eta1]
    int_width = 4.0
    x1 = 30.0
    y1 = 25.0
    radius = 10.0
    outvalue = 0.0
    variable = eta1
    invalue = 1.0
    type = SmoothCircleIC
  [../]
[]

[VectorPostprocessors]
  [./forces_cosnt]
    type = GrainForcesPostprocessor
    grain_force = grain_force_const
  [../]
  [./forces_total]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force_const]
    type = ConstantGrainForceAndTorque
    execute_on = 'linear nonlinear'
    force =  '5.0 10.0 0.0 1.0 0.0 0.0'
    torque = '0.0 0.0 50.0 0.0 0.0 5.0'
  [../]
  [./grain_force]
    type = MaskedGrainForceAndTorque
    grain_force = grain_force_const
    pinned_grains = 0
    execute_on = 'linear nonlinear'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  l_max_its = 20
  nl_max_its = 20
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 1
  dt = 1.0
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_1/brick1_template2.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick1_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_x
  [../]
  [./disp_x13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_y
  [../]
  [./disp_y13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_x8 disp_x13 disp_x16 disp_y5 disp_y8 disp_y13 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 5e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/tensor_mechanics/test/tests/beam/static/euler_finite_rot_y_action.i

# Large strain/large rotation cantilever beam tese

# A 300 N point load is applied at the end of a 4 m long cantilever beam.
# Young's modulus (E) = 1e4
# Shear modulus (G) = 1e8
# shear coefficient (k) = 1.0
# Area (A) = 1.0
# Iy = Iz = 0.16

# The non-dimensionless parameter alpha = kAGL^2/EI = 1e6
# Since the value of alpha is quite high, the beam behaves like
# a thin beam where shear effects are not significant.

# Beam deflection:
# small strain+rot = 3.998 m (exact 4.0)
# large strain + small rotation = -0.05 m in x and 3.74 m in y
# large rotations + small strain = -0.92 m in x and 2.38 m in y
# large rotations + large strain = -0.954 m in x and 2.37 m in y (exact -1.0 m in x and 2.4 m in y)

# References:
# K. E. Bisshopp and D.C. Drucker, Quaterly of Applied Mathematics, Vol 3, No. 3, 1945.

[Mesh]
  type = FileMesh
  file = beam_finite_rot_test_2.e
  displacements = 'disp_x disp_y disp_z'
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = 1
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = 1
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = 1
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = 2
    function = force
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 2.0  8.0'
    y = '0.0 300.0 300.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = 'none'
  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre     boomeramg     4'
  nl_max_its = 50
  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-7
  l_max_its = 50
  dt = 0.05
  end_time = 2.1
[]

[Modules/TensorMechanics/LineElementMaster]
  [./all]
  add_variables = true
  displacements = 'disp_x disp_y disp_z'
  rotations = 'rot_x rot_y rot_z'
  strain_type = FINITE
  rotation_type = FINITE

  # Geometry parameters
  area = 1.0
  Iy = 0.16
  Iz = 0.16
  y_orientation = '0.0 1.0 0.0'
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1e4
    poissons_ratio = -0.99995
    shear_coefficient = 1.0
    block = 1
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 1
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./rot_z]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = rot_z
  [../]
[]

[Outputs]
  file_base = 'euler_finite_rot_y_out'
  exodus = true
  perf_graph = true
[]

modules/porous_flow/test/tests/flux_limited_TVD_advection/fltvd_2D_blocks.i

# Using Flux-Limited TVD Advection ala Kuzmin and Turek
# 2D version with blocks
# Top block: tracer is defined here, with velocity = (0.1, 0, 0)
# Central block: tracer is not defined here
# Bottom block: tracer is defined here, with velocity = (-0.1, 0, 0)

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    xmin = 0
    xmax = 1
    ny = 5
    ymin = 0
    ymax = 1
  []
  [./top]
    input = gen
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0 0.6 0'
    top_right = '1 1 0'
    block_id = 1
  [../]
  [./center]
    input = bottom
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0 0.4 0'
    top_right = '1 0.6 0'
    block_id = 2
  [../]
  [./bottom]
    input = top
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0 0 0'
    top_right = '1 0.6 0'
    block_id = 3
  [../]
  [./split_bdys]
    type = BreakBoundaryOnSubdomainGenerator
    input = center
    boundaries = 'left right'
  [../]
[]

[GlobalParams]
  block = '1 2 3'
[]

[Variables]
  [./tracer]
    block = '1 3'
  [../]
  [./dummy]
  [../]
[]

[ICs]
  [./tracer_top]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1 | x>0.3, 0, 1)'
    block = '1'
  [../]
  [./tracer_bot]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.7 | x > 0.9, 0, 1)'
    block = '3'
  [../]
[]

[Kernels]
  [./mass_dot]
    type = MassLumpedTimeDerivative
    variable = tracer
    block = '1 3'
  [../]
  [./flux_top]
    type = FluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = fluo_top
    block = '1'
  [../]
  [./flux_bot]
    type = FluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = fluo_bot
    block = '3'
  [../]
  [.dummy]
    type = TimeDerivative
    variable = dummy
  [../]
[]

[UserObjects]
  [./fluo_top]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = superbee
    u = tracer
    velocity = '0.1 0 0'
    block = '1'
  [../]
  [./fluo_bot]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = superbee
    u = tracer
    velocity = '-0.1 0 0'
    block = '3'
  [../]
[]

[BCs]
  [./no_tracer_on_left_top]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = 'left_to_1'
  [../]
  [./remove_tracer_top]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = 'right_to_1'
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
  [./no_tracer_on_left_bot]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = 'left_to_3'
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
  [./remove_tracer_bot]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = 'right_to_3'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer_bot]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 11
    sort_by = x
    variable = tracer
  [../]
  [./tracer_top]
    type = LineValueSampler
    start_point = '0 1 0'
    end_point = '1 1 0'
    num_points = 11
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  timestep_tolerance = 1E-3
[]

[Outputs]
  print_linear_residuals = false
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/postprocessors/mms_polynomial/mms_polynomial_test.i

#MMS.i
#This is for u = a*x^3*y*t+b*y^2*z+e*x*y*z^4
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 1
  elem_type = HEX8
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables] #We added nodal AuxVariables
  active = 'nodal_aux'

  [./nodal_aux]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]

  active = 'diff implicit conv forcing reaction'

  [./diff]
    type = PolyDiffusion
    variable = u
  [../]

  [./implicit] #We got from MOOSE kernels
    type = TimeDerivative
    variable = u
  [../]

  [./conv] #We created our own convection kernel
    type = PolyConvection
    variable = u
    x = -1
    y = 2
    z = -3
  [../]

  [./forcing] #We created our own forcing kernel
    type = PolyForcing
    variable = u
  [../]

  [./reaction] #We got from MOOSE kernels
    type = PolyReaction
    variable = u
  [../]
[]
[AuxKernels] #We created our own AuxKernel
  active = 'ConstantAux'

  [./ConstantAux]
    type = PolyConstantAux
    variable = nodal_aux
  [../]
[]

[BCs]
  active = 'all_u'

  [./all_u]
    type = PolyCoupledDirichletBC
    variable = u
    boundary = '0 1 2 3 4 5'
  [../]
[]

[Executioner]
  type = Transient
  dt = .1
  num_steps = 20

  solve_type = 'PJFNK'
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/errors/sub_missing_control.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/sliding_block/sliding/dirac/frictional_04_penalty.i

#  This is a benchmark test that checks Dirac based frictional
#  contact using the penalty method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  A friction coefficient of 0.4 is used.  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./stiffStuff]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]  # Materials

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 200
  nl_max_its = 1000
  dt = 0.05
  end_time = 10
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    friction_coefficient = 0.4
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/porous_flow/test/tests/sinks/s01.i

# apply a sink flux and observe the correct behavior
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = y+1
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.3
      density0 = 1.1
      thermal_expansion = 0
      viscosity = 1.1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-5 0 0 0 1E-5 0 0 0 1E-5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[AuxVariables]
  [./flux_out]
  [../]
  [./xval]
  [../]
  [./yval]
  [../]
[]

[ICs]
  [./xval]
    type = FunctionIC
    variable = xval
    function = x
  [../]
  [./yval]
    type = FunctionIC
    variable = yval
    function = y
  [../]
[]

[Functions]
  [./mass00]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)'
    vars = 'vol por dens0 pp bulk'
    vals = '0.25 0.1 1.1 p00 1.3'
  [../]
  [./mass01]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)'
    vars = 'vol por dens0 pp bulk'
    vals = '0.25 0.1 1.1 p01 1.3'
  [../]
  [./expected_mass_change00]
    type = ParsedFunction
    value = 'fcn*perm*dens0*exp(pp/bulk)/visc*area*dt'
    vars = 'fcn perm dens0 pp bulk visc area dt'
    vals = '6   1    1      0  1.3  1  0.5  1E-3'
  [../]
[]

[Postprocessors]
  [./p00]
    type = PointValue
    point = '0 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m00]
    type = FunctionValuePostprocessor
    function = mass00
    execute_on = 'initial timestep_end'
  [../]
  [./del_m00]
    type = FunctionValuePostprocessor
    function = expected_mass_change00
    execute_on = 'timestep_end'
  [../]
  [./p10]
    type = PointValue
    point = '1 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./p01]
    type = PointValue
    point = '0 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m01]
    type = FunctionValuePostprocessor
    function = mass01
    execute_on = 'initial timestep_end'
  [../]
  [./p11]
    type = PointValue
    point = '1 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./flux]
    type = PorousFlowSink
    boundary = 'left'
    variable = pp
    use_mobility = false
    use_relperm = true
    fluid_phase = 0
    flux_function = 6
    save_in = flux_out
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_max_it -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu 10000 NONZERO 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-3
  end_time = 1E-2
  nl_rel_tol = 1E-12
  nl_abs_tol = 1E-12
[]

[Outputs]
  file_base = s01
  [./console]
    type = Console
    execute_on = 'nonlinear linear'
  [../]
  [./csv]
    type = CSV
    execute_on = 'initial timestep_end'
  [../]
[]

test/tests/bcs/periodic/periodic_bc_displaced_problem.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  nz = 0
  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  use_displaced_mesh = false
  displacements = 'disp_x disp_y'
[]


[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]

  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]

[]

[BCs]
  [./Periodic]
    [./x]
      variable = u
      primary = 3
      secondary = 1
      translation = '40 0 0'
    [../]

    [./y]
      variable = u
      primary = 0
      secondary = 2
      translation = '0 40 0'
    [../]
  [../]

  [./disp_0]
    type = DirichletBC
    variable = disp_x
    boundary = '0'
    value = 0.01
  [../]

  [./disp_1]
    type = DirichletBC
    variable = disp_y
    boundary = '0'
    value = 0.01
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 20
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_displaced_problem
  exodus = true
[]

modules/tensor_mechanics/test/tests/multiple_two_parameter_plasticity/cycled_dp_then_wp.i

# Use ComputeMultipleInelasticStress with two inelastic models: CappedDruckerPrager and CappedWeakPlane.
# The relative_tolerance and absolute_tolerance parameters are set very large so that
# only one iteration is performed.  This is the algorithm that FLAC uses to model
# jointed rocks, only Capped-Mohr-Coulomb is used instead of CappedDruckerPrager
#
# In this test "cycle_models=true" so that in the first timestep only
# CappedDruckerPrager is used, while in the second timestep only
# CappedWeakPlane is used.
#
# initial_stress = diag(1E3, 1E3, 1E3)
# The CappedDruckerPrager has tensile strength 3E2 and large cohesion,
# so the stress initially returns to diag(1E2, 1E2, 1E2)
# The CappedWeakPlane has tensile strength zero and large cohesion,
# so the stress returns to diag(1E2 - v/(1-v)*1E2, 1E2 - v/(1-v)*1E2, 0)
# where v=0.2 is the Poisson's ratio

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    eigenstrain_names = ini_stress
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = 0
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = 0
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = 0
  [../]
[]

[AuxVariables]
  [./yield_fcn_dp]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn_wp]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tensile_cdp]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tensile_cwp]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_dp_auxk]
    type = MaterialStdVectorAux
    index = 1    # this is the tensile yield function - it should be zero
    property = cdp_plastic_yield_function
    variable = yield_fcn_dp
  [../]
  [./yield_fcn_wp_auxk]
    type = MaterialStdVectorAux
    index = 1    # this is the tensile yield function - it should be zero
    property = cwp_plastic_yield_function
    variable = yield_fcn_wp
  [../]
  [./tensile_cdp]
    type = MaterialStdVectorAux
    index = 1
    property = cdp_plastic_internal_parameter
    variable = tensile_cdp
  [../]
  [./tensile_cwp]
    type = MaterialStdVectorAux
    index = 1
    property = cwp_plastic_internal_parameter
    variable = tensile_cwp
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./i_cdp]
    type = PointValue
    point = '0 0 0'
    variable = tensile_cdp
  [../]
  [./i_cwp]
    type = PointValue
    point = '0 0 0'
    variable = tensile_cwp
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 300
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    internal_constraint_tolerance = 1 # irrelevant here
    yield_function_tolerance = 1      # irrelevant here
  [../]
  [./wp_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
  [./wp_tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./wp_tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./wp_t_strength]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./wp_c_strength]
    type = TensorMechanicsHardeningConstant
    value = 1E4
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.2
    youngs_modulus = 1.0
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1E3 0 0  0 1E3 0  0 0 1E3'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    relative_tolerance = 1E4
    absolute_tolerance = 2
    inelastic_models = 'cdp cwp'
    perform_finite_strain_rotations = false
    cycle_models = true
  [../]
  [./cdp]
    type = CappedDruckerPragerStressUpdate
    base_name = cdp
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-5
    tip_smoother = 1E3
    smoothing_tol = 1E3
  [../]
  [./cwp]
    type = CappedWeakPlaneStressUpdate
    base_name = cwp
    cohesion = wp_coh
    tan_friction_angle = wp_tanphi
    tan_dilation_angle = wp_tanpsi
    tensile_strength = wp_t_strength
    compressive_strength = wp_c_strength
    tip_smoother = 1E3
    smoothing_tol = 1E3
    yield_function_tol = 1E-5
  [../]
[]


[Executioner]
  end_time = 2
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = cycled_dp_then_wp
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update1_cosserat.i

# Cosserat version of Capped Mohr Columb (using StressUpdate)
# Tensile failure only, starting from a symmetric stress state
# and returning to the plane

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 3E3
    poisson = 0.2
    layer_thickness = 1.0
    joint_normal_stiffness = 1.0E3
    joint_shear_stiffness = 2.0E3
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 0 0  0 0 0  0 0 -2'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombCosseratStressUpdate
    host_youngs_modulus = 3E3
    host_poissons_ratio = 0.2
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/transfers/multiapp_userobject_transfer/tosub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 8
  xmax = 0.1
  ymax = 0.5
[]

[Variables]
  [./u]
    initial_condition = 1
  [../]
[]

[AuxVariables]
  [./multi_layered_average]
  [../]
  [./element_multi_layered_average]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./axial_force]
    type = ParsedFunction
    value = 1000*y
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = axial_force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.001

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Problem]
  coord_type = rz
  type = FEProblem
[]

modules/xfem/test/tests/second_order_elements/diffusion_3d_hex27.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 4
  nz = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.2
  elem_type = HEX27
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./square_planar_cut_uo]
    type = RectangleCutUserObject
    cut_data = '  0.35 1.01 -0.001
                  0.35 0.49 -0.001
                  0.35 0.49  0.201
                  0.35 1.01  0.201'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = FunctionDirichletBC
    variable = u
    boundary = left
    function = u_left
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/multiapps/picard_failure/picard_sub_no_fail.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Postprocessors]
  [./elem_average_value]
    type = ElementAverageValue
    variable = v
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/2d_moving_penetration/pl_test1q.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test1q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1.e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test1q_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_rayleigh_hht.i

# Test for damped small strain euler beam vibration in y direction

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 1e4
# Shear modulus (G) = 4e7
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 0.01
# Iy = 1e-4 = Iz
# Length (L)= 4 m
# density (rho) = 1.0
# mass proportional rayleigh damping(eta) = 0.1
# stiffness proportional rayleigh damping(eta) = 0.1
# HHT time integration parameter (alpha) = -0.3
# Corresponding Newmark beta time integration parameters beta = 0.4225 and gamma = 0.8

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 6.4e6
# Therefore, the behaves like a Euler-Bernoulli beam.

# The displacement time history from this analysis matches with that obtained from Abaqus.

# Values from the first few time steps are as follows:
# time  disp_y                vel_y                accel_y
# 0.0   0.0                   0.0                  0.0
# 0.2   0.019898364318588     0.18838688112273     1.1774180070171
# 0.4   0.045577003505278     0.087329917525455   -0.92596052423724
# 0.6   0.063767907208218     0.084330765885995    0.21274543331268
# 0.8   0.073602908614573     0.020029576220975   -0.45506879373455
# 1.0   0.06841704414745     -0.071840076837194   -0.46041813317992

[Mesh]
  type = GeneratedMesh
  nx = 10
  dim = 1
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.4225
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.4225
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.4225
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./rot_accel_x]
    type = NewmarkAccelAux
    variable = rot_accel_x
    displacement = rot_x
    velocity = rot_vel_x
    beta = 0.4225
    execute_on = timestep_end
  [../]
  [./rot_vel_x]
    type = NewmarkVelAux
    variable = rot_vel_x
    acceleration = rot_accel_x
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./rot_accel_y]
    type = NewmarkAccelAux
    variable = rot_accel_y
    displacement = rot_y
    velocity = rot_vel_y
    beta = 0.4225
    execute_on = timestep_end
  [../]
  [./rot_vel_y]
    type = NewmarkVelAux
    variable = rot_vel_y
    acceleration = rot_accel_y
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./rot_accel_z]
    type = NewmarkAccelAux
    variable = rot_accel_z
    displacement = rot_z
    velocity = rot_vel_z
    beta = 0.4225
    execute_on = timestep_end
  [../]
  [./rot_vel_z]
    type = NewmarkVelAux
    variable = rot_vel_z
    acceleration = rot_accel_z
    gamma = 0.8
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.2 0.4 10.0'
    y = '0.0 0.01  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  l_tol = 1e-11
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10
  start_time = 0.0
  dt = 0.2
  end_time = 5.0
  timestep_tolerance = 1e-6
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
    zeta = 0.1
    alpha = -0.3
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
    zeta = 0.1
    alpha = -0.3
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
    zeta = 0.1
    alpha = -0.3
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
    zeta = 0.1
    alpha = -0.3
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
    zeta = 0.1
    alpha = -0.3
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
    zeta = 0.1
    alpha = -0.3
  [../]
  [./inertial_force_x]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.4225
    gamma = 0.8
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 0
    variable = disp_x
    alpha = -0.3
  [../]
  [./inertial_force_y]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.4225
    gamma = 0.8
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 1
    variable = disp_y
    alpha = -0.3
  [../]
  [./inertial_force_z]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.4225
    gamma = 0.8
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 2
    variable = disp_z
    alpha = -0.3
  [../]
  [./inertial_force_rot_x]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.4225
    gamma = 0.8
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 3
    variable = rot_x
    alpha = -0.3
  [../]
  [./inertial_force_rot_y]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.4225
    gamma = 0.8
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 4
    variable = rot_y
    alpha = -0.3
  [../]
  [./inertial_force_rot_z]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.4225
    gamma = 0.8
    eta = 0.1
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 5
    variable = rot_z
    alpha = -0.3
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e4
    poissons_ratio = -0.999875
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.01
    Ay = 0.0
    Az = 0.0
    Iy = 1.0e-4
    Iz = 1.0e-4
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1.0'
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/beam.i

# A beam with its ends fully clamped
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 10
  nz = 10
  xmin = -10
  xmax = 10
  ymin = -10
  ymax = 10
  zmin = -50
  zmax = 0
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
  [./gravity_y]
    type = Gravity
    use_displaced_mesh = false
    variable = disp_y
    value = -10
  [../]
[]

[BCs]
  [./zmax_xfixed]
    type = DirichletBC
    variable = disp_x
    boundary = front
    value = 0
  [../]
  [./zmax_yfixed]
    type = DirichletBC
    variable = disp_y
    boundary = front
    value = 0
  [../]
  [./zmax_zfixed]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0
  [../]

  [./zmin_xfixed]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0
  [../]
  [./zmin_yfixed]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0
  [../]
  [./zmin_zfixed]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
  [./straint_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xx
    index_i = 0
    index_j = 0
  [../]
  [./straint_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xy
    index_i = 0
    index_j = 1
  [../]
  [./straint_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xz
    index_i = 0
    index_j = 2
  [../]
  [./straint_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yy
    index_i = 1
    index_j = 1
  [../]
  [./straint_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yz
    index_i = 1
    index_j = 2
  [../]
  [./straint_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zz
    index_i = 2
    index_j = 2
  [../]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[UserObjects]
  [./coh_irrelevant]
    type = TensorMechanicsHardeningCubic
    value_0 = 2E6
    value_residual = 2E6
    internal_limit = 0.01
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.5
    value_residual = 0.5
    internal_limit = 0.01
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.166666666667
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 0
    value_residual = 0
    internal_limit = 0.1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E80
    value_residual = 0.0
    internal_limit = 0.01
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '6.4E9 6.4E9'  # young 16MPa, Poisson 0.25
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh_irrelevant
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 1000
    tip_smoother = 1E5
    smoothing_tol = 1E5
    yield_function_tol = 1E-5
    perfect_guess = true
    min_step_size = 0.1
  [../]
  [./density]
    type = GenericFunctionMaterial
    block = 0
    prop_names = density
    prop_values = 1E3*t
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_converged_reason -snes_linesearch_monitor'
    petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
    petsc_options_value = ' asm      2              lu            gmres     200'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason'
  line_search = bt
  nl_abs_tol = 1E-2
  nl_rel_tol = 1e-15
  l_tol = 1E-10

  l_max_its = 100
  nl_max_its = 100
  end_time = 10
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = beam
  exodus = true
  csv = true
[]

modules/richards/test/tests/sinks/s01.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.5
    al = 1 # same deal with PETScs constant state
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 2
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((mi-lfout-rfout-mf)/2/(mi+mf))
    vars = 'mi mf lfout rfout'
    vals = 'mass_init mass_fin left_flux_out right_flux_out'
  [../]
[]

[Postprocessors]
  [./mass_init]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]
  [./mass_fin]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]
  [./left_flux_out]
    type = RichardsPiecewiseLinearSinkFlux
    boundary = left
    variable = pressure
    pressures = '0 1'
    bare_fluxes = '1 2'
    use_mobility = false
    use_relperm = false
  [../]
  [./right_flux_out]
    type = RichardsPiecewiseLinearSinkFlux
    boundary = right
    variable = pressure
    pressures = '0 1'
    bare_fluxes = '1 2'
    use_mobility = false
    use_relperm = false
  [../]
  [./p0]
    type = PointValue
    point = '0 0 0'
    variable = pressure
  [../]
  [./mass_bal]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = left
    pressures = '0 1'
    bare_fluxes = '1 2'
    variable = pressure
    use_mobility = false
    use_relperm = false
  [../]
  [./right_flux]
    type = RichardsPiecewiseLinearSink
    boundary = right
    pressures = '0 1'
    bare_fluxes = '1 2'
    variable = pressure
    use_mobility = false
    use_relperm = false
  [../]
[]

[Kernels]
  active = 'richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
[]

[AuxVariables]
  [./one]
    initial_condition = 1
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  dt = 2E-3
  end_time = 0.2
  nl_rel_tol = 1E-12
  nl_abs_tol = 1E-12
[]

[Outputs]
  file_base = s01
  csv = true
  execute_on = timestep_end
[]

test/tests/outputs/checkpoint/checkpoint_interval.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 11
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  [out]
    type = Checkpoint
    interval = 3
    num_files = 2
  []
[]

modules/combined/test/tests/gravity/gravity_hex20_sm.i

# Gravity Test
#
# This test is designed to exercise the gravity body force kernel.
#
# The mesh for this problem is a rectangular bar 10 units by 1 unit
#   by 1 unit.
#
# The boundary conditions for this problem are as follows.  The
#   displacement is zero on each of side that faces a negative
#   coordinate direction.  The acceleration of gravity is 20.
#
# The material has a Young's modulus of 1e6 and a density of 2.
#
# The analytic solution for the displacement along the bar is:
#
# u(x) = -b*x^2/(2*E)+b*L*x/E
#
# The displacement at x=L is b*L^2/(2*E) = 2*20*10*10/(2*1e6) = 0.002.
#
# The analytic solution for the stress along the bar assuming linear
#   elasticity is:
#
# S(x) = b*(L-x)
#
# The stress at x=0 is b*L = 2*20*10 = 400.
#
# Note:  The simulation does not measure stress at x=0.  The stress
#   is reported at element centers.  The element closest to x=0 sits
#   at x = 1/4 and has a stress of 390.  This matches the linear
#   stress distribution that is expected.  The same situation applies
#   at x = L where the stress is zero analytically.  The nearest
#   element is at x=9.75 where the stress is 10.
#

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = false
[]

[Mesh]
  file = gravity_hex20_test.e
[]

[Variables]
  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]
  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]
  [./disp_z]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Kernels]
  [./gravity]
    type = Gravity
    variable = disp_x
    value = 20
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 5
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    bulk_modulus = 0.333333333333333e6
  [../]

  [./density]
    type = Density
    block = 1
    density = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = gravity_hex20_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/misc/check_error/wrong_displacement_order.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  # Mesh uses second-order elements
  elem_type = QUAD8
  displacements = 'disp_x disp_y'
  block_name = pore
  block_id = 0
[]

[Variables]
  [./temperature]
    order = SECOND
    [./InitialCondition]
      type = ConstantIC
      value = 0.0
    [../]
  [../]
[]

# We are *not* allowed to use FIRST-order displacement vars!
[AuxVariables]
  [./disp_x]
  [../]

  [./disp_y]
    [./InitialCondition]
      type = FunctionIC
      function = displ
    [../]
  [../]
[]

[Functions]
  [./displ]
    type = ParsedFunction
    value = -1/2*x*(y-0.5)
  [../]
[]

[Kernels]
  [./diffusion]
    type = Diffusion
    variable = temperature
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = temperature
    boundary = left
    value = 1
    use_displaced_mesh = true
  [../]
  [./right]
    type = DirichletBC
    variable = temperature
    boundary = right
    value = 0
    use_displaced_mesh = true
  [../]
[]

[Preconditioning]
  [./SMP_PJFNK]
    type = SMP
    full = true
    solve_type = PJFNK
  [../]
[]

[Executioner]
  type = Transient
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = none
  nl_rel_tol = 1e-6
  nl_max_its = 10
  l_tol = 1e-8
  l_max_its = 50
  num_steps = 2 # 200
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  nl_abs_step_tol = 1e-10
  [./TimeStepper]
    type = ConstantDT
    dt = 0.001
  [../]
  dtmin = .001
[]

[Outputs]
  exodus = true
[]

modules/level_set/test/tests/functions/olsson_vortex/olsson_vortex.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./vel_y]
  [../]
[]

[AuxKernels]
  [./vel_x_aux]
    type = FunctionAux
    variable = vel_x
    function = vel_x_func
    execute_on = 'initial timestep_end'
  [../]
  [./vel_y_aux]
    type = FunctionAux
    variable = vel_y
    function = vel_y_func
    execute_on = 'initial timestep_end'
  [../]
[]

[Functions]
  [./vel_x_func]
    type = LevelSetOlssonVortex
    component = x
  [../]
  [./vel_y_func]
    type = LevelSetOlssonVortex
    component = y
  [../]
[]

[Problem]
  solve = false
[]

[Executioner]
  type = Transient
  dt = 0.1
  end_time = 2
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_postprocessor_to_scalar/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_master_app]
    order = FIRST
    family = SCALAR
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.01
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Postprocessors]
  [./from_master]
    type = ScalarVariable
    variable = from_master_app
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  num_steps = 1
  dt = 1
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
  hide = from_master_app
[]

modules/phase_field/test/tests/SoretDiffusion/split.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmax = 1000
  nx = 50
[]

[GlobalParams]
  polynomial_order = 8
[]

[Variables]
  [./c]
  [../]
  [./w]
    scaling = 1.0e3
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 175.0
    y1 = 0.0
    radius = 100
    invalue = 1.0
    outvalue = 0.01
    int_width = 100.0
    variable = c
  [../]
[]

[AuxVariables]
  [./T]
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    kappa_name = kappa
    w = w
    f_name = F
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./w_res_soret]
    type = SoretDiffusion
    variable = w
    c = c
    T = T
    diff_name = D
    Q_name = Qstar
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[AuxKernels]
  [./Temp]
    type = FunctionAux
    variable = T
    function = 1000.0+0.025*x
  [../]
[]

[Materials]
  [./Copper]
    type = PFParamsPolyFreeEnergy
    c = c
    T = T # K
    int_width = 80.0
    length_scale = 1.0e-9
    time_scale = 1.0e-6
    D0 = 3.1e-5 # m^2/s, from Brown1980
    Em = 0.71 # in eV, from Balluffi1978 Table 2
    Ef = 1.28 # in eV, from Balluffi1978 Table 2
    surface_energy = 0.708 # Total guess
  [../]
  [./free_energy]
    type = PolynomialFreeEnergy
    c = c
    outputs = exodus
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'
  # petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  # petsc_options_value = 'asm         31   preonly   lu      1'

  l_max_its = 10
  l_tol = 1.0e-4
  nl_max_its = 25
  nl_rel_tol = 1.0e-9

  start_time = 0.0
  num_steps = 20
  dt = 3
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/nodal_area/nodal_area_Hex20_3_sm.i

[Mesh]
  file = nodal_area_Hex20.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'displ_x displ_y displ_z'
  volumetric_locking_correction = false
[]

[Functions]
  [./disp]
    type = PiecewiseLinear
    x = '0     1'
    y = '0  20e-6'
  [../]
[]

[Variables]
  [./displ_x]
  [../]
  [./displ_y]
  [../]
  [./displ_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./react_x]
  [../]
  [./react_y]
  [../]
  [./react_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = displ_x
    disp_y = displ_y
    disp_z = displ_z
    save_in_disp_x = react_x
    save_in_disp_y = react_y
    save_in_disp_z = react_z
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
[]

[BCs]
  [./move_right]
    type = FunctionDirichletBC
    boundary = '1'
    variable = displ_x
    function = disp
  [../]

  [./fixed_x]
    type = DirichletBC
    boundary = '3 4'
    variable = displ_x
    value = 0
  [../]

  [./fixed_y]
    type = DirichletBC
    boundary = 10
    variable = displ_y
    value = 0
  [../]

  [./fixed_z]
    type = DirichletBC
    boundary = 11
    variable = displ_z
    value = 0
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    formulation = penalty
    penalty = 1e9
    tangential_tolerance = 1e-5
    system = Constraint
  [../]
[]

[Materials]
  [./dummy]
    type = Elastic
    block = '1 2'

    disp_x = displ_x
    disp_y = displ_y
    disp_z = displ_z

    youngs_modulus = 1e6
    poissons_ratio = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'
  nl_rel_tol = 1e-7
  l_tol = 1e-4
  l_max_its = 40
  nl_max_its = 10

  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./react_x]
    type = NodalSum
    variable = react_x
    boundary = 1
  [../]
  [./total_area]
    type = NodalSum
    variable = nodal_area_dummy_name
    boundary = 2
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto05.i

# checking jacobian for 3-plane linear plasticity using SimpleTester.
#
# This is like the test multi/three_surface04.i
# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# trial stress_yy = 0.8 and stress_zz = 1.5
#
# Then SimpleTester0 and SimpleTester2 should activate and the algorithm will return to
# the corner stress_yy=0.5, stress_zz=1
# internal0 should be 0.2E-6, and internal2 should be 0.3E-6


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 0.8 0  0 0 1.5'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    tangent_operator = linear
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/multi/paper1.i

# This runs the models mentioned in the first example of the Multi-Surface paper
#
# Plasticity models:
# SimpleTester with a = 1 and b = 0 and strength = 1E9  (only does elasticity)
# SimpleTester with a = 1 and b = 0 and strength = 0
# SimpleTester with a = 1 and b = 0 and strength = 1E-3
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./linesearch]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ld]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./constr_added]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./linesearch]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = linesearch
  [../]
  [./ld]
    type = MaterialRealAux
    property = plastic_linear_dependence_encountered
    variable = ld
  [../]
  [./constr_added]
    type = MaterialRealAux
    property = plastic_constraints_added
    variable = constr_added
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./max_iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./av_linesearch]
    type = ElementAverageValue
    variable = linesearch
    outputs = console
  [../]
  [./av_ld]
    type = ElementAverageValue
    variable = ld
    outputs = console
  [../]
  [./av_constr_added]
    type = ElementAverageValue
    variable = constr_added
    outputs = console
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = console
  [../]
[]


[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1E9
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 0
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1E-3
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
[]

[Materials]
  active = 'elasticity_tensor strain single'
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./elastic_model]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-7
    plastic_models = 'simple0'
  [../]
  [./single]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-7
    plastic_models = 'simple1'
  [../]
  [./double]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-7
    plastic_models = 'simple1 simple2'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = paper1
  exodus = false
  csv = true
[]

modules/richards/test/tests/buckley_leverett/bl20.i

# two-phase version
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 30
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '0.1 0.5 0.5 1 2  4'
    x = '0   0.1 1   5 40 42'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E6
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
  [./bounds_dummy]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
  [./richardsppenalty]
    type = RichardsPPenalty
    variable = pgas
    a = 1E-18
    lower_var = pwater
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[Bounds]
  [./pwater_bounds]
    type = BoundsAux
    variable = bounds_dummy
    bounded_variable = pwater
    upper = 1E7
    lower = -310000
  [../]
[]


[ICs]
  [./water_ic]
    type = FunctionIC
    variable = pwater
    function = initial_water
  [../]
  [./gas_ic]
    type = FunctionIC
    variable = pgas
    function = initial_gas
  [../]
[]

[BCs]
  [./left_w]
    type = DirichletBC
    variable = pwater
    boundary = left
    value = 1E6
  [../]
  [./left_g]
    type = DirichletBC
    variable = pgas
    boundary = left
    value = 1E6
  [../]
  [./right_w]
    type = DirichletBC
    variable = pwater
    boundary = right
    value = -300000
  [../]
  [./right_g]
    type = DirichletBC
    variable = pgas
    boundary = right
    value = 0
  [../]
[]


[Functions]
  [./initial_water]
    type = ParsedFunction
    value = 1000000*(1-min(x/5,1))-300000*(max(x-5,0)/max(abs(x-5),1E-10))
  [../]
  [./initial_gas]
    type = ParsedFunction
    value = max(1000000*(1-x/5),0)+1000
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 1E-6'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'standard'

  [./bounded]
  # must use --use-petsc-dm command line argument
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type -ksp_rtol -ksp_atol'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 50 vinewtonssls 1E-20 1E-20'
  [../]

  [./standard]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
    petsc_options_value = 'gmres asm lu NONZERO 1E-10 1E-10 20 1E-20 1E-20'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 50

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = bl20
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
  hide = pgas
[]

modules/xfem/test/tests/single_var_constraint_3d/stationary_jump_3d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.25
  elem_type = HEX8
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./square_planar_cut_uo]
    type = RectangleCutUserObject
    cut_data = ' 0.5 -0.001 -0.001
                 0.5  1.001 -0.001
                 0.5  1.001  1.001
                 0.5 -0.001  1.001'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0.5
    jump_flux = 0
    geometric_cut_userobject = 'square_planar_cut_uo'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/adaptivity/initial_marker/initial_marker.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 1

  solve_type = 'PJFNK'

[]

[Adaptivity]
  steps = 1
  marker = box
  max_h_level = 2
  initial_steps = 4
  initial_marker = initial_box
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = dont_mark
      type = BoxMarker
    [../]
    [./initial_box]
      type = BoxMarker
      bottom_left = '0.8 0.1 0'
      top_right = '0.9 0.2 0'
      inside = refine
      outside = dont_mark
    [../]
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/porous_flow/test/tests/mass_conservation/mass09.i

# Checking that the mass postprocessor throws the correct error when more than a single
# phase index is given when using the saturation_threshold parameter

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./sat]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]

[ICs]
  [./pinit]
    type = ConstantIC
    value = 1
    variable = pp
  [../]
  [./satinit]
    type = FunctionIC
    function = 1-x
    variable = sat
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sat
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp sat'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = pp
    phase1_saturation = sat
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Postprocessors]
  [./comp1_total_mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    saturation_threshold = 0.5
    phase = '0 1'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

modules/phase_field/test/tests/conserved_noise/normal_masked.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 10.0
  ymin = 0.0
  ymax = 10.0
  elem_type = QUAD4
[]

[Functions]
  [./mask_func]
    type = ParsedFunction
    value = 'r:=sqrt((x-5)^2+(y-5)^2); if (r<3, 1.0, 0.0)'
  [../]
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = c
  [../]

  [./conserved_langevin]
    type = ConservedLangevinNoise
    amplitude = 0.5
    variable = c
    noise = normal_masked_noise
  []
[]

[BCs]
  [./Periodic]
    [./all]
      variable = c
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./mask_material]
    type = GenericFunctionMaterial
    prop_names  = 'mask_prop'
    prop_values = 'mask_func'
  [../]
[]

[UserObjects]
  [./normal_masked_noise]
    type = ConservedMaskedNormalNoise
    mask = mask_prop
  [../]
[]

[Postprocessors]
  [./total_c]
    type = ElementIntegralVariablePostprocessor
    variable = c
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  l_max_its = 30
  l_tol = 1.0e-3

  nl_max_its = 30
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  dt = 10.0
  num_steps = 4
[]

[Outputs]
  file_base = normal_masked
  [./csv]
    type = CSV
  [../]
[]

modules/tensor_mechanics/test/tests/capped_drucker_prager/small_deform2_inner_tip.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1.5E-6*x+2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    mc_interpolation_scheme = inner_tip
    internal_constraint_tolerance = 1 # irrelevant here
    yield_function_tolerance = 1      # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = cdp
    perform_finite_strain_rotations = false
  [../]
  [./cdp]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-8
    tip_smoother = 4
    smoothing_tol = 1E-5
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_inner_tip
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/ics/function_scalar_ic/function_scalar_ic.i

[Mesh]
  # a dummy mesh
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 1
  ny = 1
  elem_type = QUAD4
[]

[Variables]
  [./n]
    family = SCALAR
    order = FIRST
  [../]
[]

[Functions]
  [./f]
    type = ParsedFunction
    value = cos(t)
  [../]
[]

[ICs]
  [./f]
    type = FunctionScalarIC
    variable = n
    function = f
  [../]
[]

[ScalarKernels]
  [./dn]
    type = ODETimeDerivative
    variable = n
  [../]
  [./ode1]
    type = ParsedODEKernel
    function = '-n'
    variable = n
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 1
  dt = 0.01
  scheme = bdf2
  solve_type = 'PJFNK'
  timestep_tolerance = 1e-12
[]

[Outputs]
  csv = true
[]

modules/richards/test/tests/pressure_pulse/pp_fu_02.i

# investigating pressure pulse in 1D with 1 phase
# transient

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E3
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = 2E6
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[Outputs]
  file_base = pp_fu_02
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

modules/combined/test/tests/eigenstrain/variable_cahnhilliard.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 16
  ny = 16
  xmin = 0
  xmax = 50
  ymin = 0
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0
      y1 = 0
      radius = 25.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 50.0
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
  [../]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[AuxVariables]
  [./sigma11_aux]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sigma22_aux]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]
[AuxKernels]
  [./matl_sigma11]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = sigma11_aux
  [../]
  [./matl_sigma22]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = sigma22_aux
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1 5'
    block = 0
  [../]
  [./chemical_free_energy]
    type = DerivativeParsedMaterial
    block = 0
    f_name = Fc
    args = 'c'
    constant_names       = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
    enable_jit = true
    derivative_order = 2
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '7 7'
    fill_method = symmetric_isotropic
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    function = 0.1*c
    args = c
    f_name = var_dep
    enable_jit = true
    derivative_order = 2
  [../]
  [./eigenstrain]
    type = ComputeVariableEigenstrain
    block = 0
    eigen_base = '1 1 1 0 0 0'
    prefactor = var_dep
    args = 'c'
    eigenstrain_name = eigenstrain
  [../]
  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y'
    eigenstrain_names = eigenstrain
  [../]
  [./elastic_free_energy]
    type = ElasticEnergyMaterial
    f_name = Fe
    block = 0
    args = 'c'
    derivative_order = 2
  [../]
  [./free_energy]
    type = DerivativeSumMaterial
    block = 0
    f_name = F
    sum_materials = 'Fc Fe'
    args = 'c'
    derivative_order = 2
  [../]
[]

[BCs]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'top'
    value = -5
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type  -sub_pc_type '
  petsc_options_value = 'asm       lu'

  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10
  start_time = 0.0
  num_steps = 2
  dt = 1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/1D_spherical/finiteStrain_1DSphere_hollow.i

# This simulation models the mechanics solution for a hollow sphere under
# pressure, applied on the outer surfaces, using 1D spherical symmetry
# assumpitions.  The inner radius of the sphere, r = 4mm, is pinned to prevent
# rigid body movement of the sphere.
#
# From Bower (Applied Mechanics of Solids, 2008, available online at
# solidmechanics.org/text/Chapter4_1/Chapter4_1.htm), and applying the outer
# pressure and pinned displacement boundary conditions set in this simulation,
# the radial displacement is given by:
#
# u(r) = \frac{P(1 + v)(1 - 2v)b^3}{E(b^3(1 + v) + 2a^3(1-2v))} * (\frac{a^3}{r^2} - r)
#
# where P is the applied pressure, b is the outer radius, a is the inner radius,
# v is Poisson's ration, E is Young's Modulus, and r is the radial position.
#
# The radial stress is given by:
#
# S(r) = \frac{Pb^3}{b^3(1 + v) + 2a^3(1 - 2v)} * (\frac{2a^3}{r^3}(2v - 1) - (1 + v))
#
# The test assumes an inner radius of 4mm, and outer radius of 9 mm,
# zero displacement at r = 4mm, and an applied outer pressure of 2MPa.
# The radial stress is largest in the inner most element and, at an assumed
# mid element coordinate of 4.5mm, is equal to -2.545MPa.
[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 4
  xmax = 9
  nx = 5
[]

[GlobalParams]
  displacements = 'disp_r'
[]

[Problem]
  coord_type = RSPHERICAL
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
  [../]
[]

[AuxVariables]
  [./stress_rr]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./stress_rr]
    type = ElementAverageValue
    variable = stress_rr
  [../]
[]

[AuxKernels]
  [./stress_rr]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_rr
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./innerDisp]
    type = DirichletBC
    boundary = left
    variable = disp_r
    value = 0.0
  [../]
  [./outerPressure]
    type = Pressure
    boundary = right
    variable = disp_r
    component = 0
    factor = 2
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.345
    youngs_modulus = 1e4
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none


# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-8

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 0.25
  dtmin = 0.0001
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/except3.i

# checking for exception error messages on the edge smoothing
# here edge_smoother=5deg, which means the friction_angle must be <= 35.747
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 36
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 1
    mc_edge_smoother = 5
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = except3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/sliding_block/sliding/constraint/sm/frictional_02_aug_sm.i

#  This is a benchmark test that checks constraint based frictional
#  contact using the augmented lagrangian method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  A friction coefficient of 0.2 is used.  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./contact_traction]
  [../]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 200
  dt = 0.1
  end_time = 15
  num_steps = 200
  l_tol = 1e-6
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 100
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    friction_coefficient = 0.2
    formulation = augmented_lagrange
    system = constraint
    normalize_penalty = true
    al_penetration_tolerance = 1e-6
    al_incremental_slip_tolerance = 1.0e-2
    al_frictional_force_tolerance =  1e-3
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

test/tests/outputs/perf_graph/multi_app/sub_full.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  perf_graph = true
[]

modules/richards/test/tests/user_objects/uo1.i

# Relative-permeability User objects give the correct value
# (note that here p is x, where x runs between 0.01 and 0.99
# and that seff is p in the aux vars)
#
# If you want to add another test for another UserObject
# then add the UserObject, add a Function defining the expected result,
# add an AuxVariable and AuxKernel that will record the UserObjects value
# and finally add a NodalL2Error that compares this with the Function.

[UserObjects]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermPower5]
    type = RichardsRelPermPower
    simm = 0.0
    n = 5
  [../]
  [./RelPermVG]
    type = RichardsRelPermVG
    simm = 0.0
    m = 0.8
  [../]
  [./RelPermVG1]
    type = RichardsRelPermVG1
    simm = 0.0
    m = 0.8
    scut = 1E-6 # then we get a cubic
  [../]
  [./RelPermBW]
    type = RichardsRelPermBW
    Sn = 0.05
    Ss = 0.95
    Kn = 0.0
    Ks = 1.0
    C = 1.5
  [../]
  [./RelPermMonomial]
    type = RichardsRelPermMonomial
    simm = 0.0
    n = 3
  [../]
  [./RelPermPowerGas]
    type = RichardsRelPermPowerGas
    simm = 0.0
    n = 5
  [../]
  [./Q2PRelPermPowerGas]
    type = Q2PRelPermPowerGas
    simm = 0.0
    n = 5
  [../]
  [./RelPermMonomial_zero]
    type = RichardsRelPermMonomial
    simm = 0.1
    n = 0
    zero_to_the_zero = 0
  [../]

  # following are unimportant in this test
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E6
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-6
  [../]
  [./RelPermPower_unimportant]
    type = RichardsRelPermPower
    simm = 0.10101
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.054321
    sum_s_res = 0.054321
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E5
  [../]
[]

[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = x
  [../]

  [./answer_RelPermPower]
    type = ParsedFunction
    value = ((n+1)*(x^n))-(n*(x^(n+1)))
    vars = 'n'
    vals = '2'
  [../]
  [./answer_dRelPermPower]
    type = GradParsedFunction
    direction = '1E-4 0 0'
    value = ((n+1)*(x^n))-(n*(x^(n+1)))
    vars = 'n'
    vals = '2'
  [../]
  [./answer_d2RelPermPower]
    type = Grad2ParsedFunction
    direction = '1E-3 0 0'
    value = ((n+1)*(x^n))-(n*(x^(n+1)))
    vars = 'n'
    vals = '2'
  [../]

  [./answer_RelPermPower5]
    type = ParsedFunction
    value = ((n+1)*(x^n))-(n*(x^(n+1)))
    vars = 'n'
    vals = '5'
  [../]
  [./answer_dRelPermPower5]
    type = GradParsedFunction
    direction = '1E-4 0 0'
    value = ((n+1)*(x^n))-(n*(x^(n+1)))
    vars = 'n'
    vals = '5'
  [../]
  [./answer_d2RelPermPower5]
    type = Grad2ParsedFunction
    direction = '1E-5 0 0'
    value = ((n+1)*(x^n))-(n*(x^(n+1)))
    vars = 'n'
    vals = '5'
  [../]

  [./answer_RelPermVG]
    type = ParsedFunction
    value = (x^(0.5))*(1-(1-(x^(1.0/m)))^m)^2
    vars = 'm'
    vals = '0.8'
  [../]
  [./answer_dRelPermVG]
    type = GradParsedFunction
    direction = '1E-4 0 0'
    value = (x^(0.5))*(1-(1-(x^(1.0/m)))^m)^2
    vars = 'm'
    vals = '0.8'
  [../]
  [./answer_d2RelPermVG]
    type = Grad2ParsedFunction
    direction = '1E-5 0 0'
    value = (x^(0.5))*(1-(1-(x^(1.0/m)))^m)^2
    vars = 'm'
    vals = '0.8'
  [../]

  [./answer_RelPermVG1]
    type = ParsedFunction
    value = x^3
  [../]
  [./answer_dRelPermVG1]
    type = GradParsedFunction
    direction = '1E-4 0 0'
    value = x^3
  [../]
  [./answer_d2RelPermVG1]
    type = Grad2ParsedFunction
    direction = '1E-5 0 0'
    value = x^3
  [../]

  [./answer_RelPermBW]
    type = ParsedFunction
    value = if(x>ss,1,if(x<sn,0,kn+(((x-sn)/(ss-sn))^2)*(c-1)*(ks-kn)/(c-((x-sn)/(ss-sn)))))
    vars = 'kn ks c sn ss'
    vals = '0 1 1.5 0.05 0.95'
  [../]
  [./answer_dRelPermBW]
    type = GradParsedFunction
    direction = '1E-4 0 0'
    value = if(x>ss,1,if(x<sn,0,kn+(((x-sn)/(ss-sn))^2)*(c-1)*(ks-kn)/(c-((x-sn)/(ss-sn)))))
    vars = 'kn ks c sn ss'
    vals = '0 1 1.5 0.05 0.95'
  [../]
  [./answer_d2RelPermBW]
    type = Grad2ParsedFunction
    direction = '1E-5 0 0'
    value = if(x>ss,1,if(x<sn,0,kn+(((x-sn)/(ss-sn))^2)*(c-1)*(ks-kn)/(c-((x-sn)/(ss-sn)))))
    vars = 'kn ks c sn ss'
    vals = '0 1 1.5 0.05 0.95'
  [../]

  [./answer_RelPermMonomial]
    type = ParsedFunction
    value = x^n
    vars = 'n'
    vals = '3'
  [../]
  [./answer_dRelPermMonomial]
    type = GradParsedFunction
    direction = '1E-4 0 0'
    value = x^n
    vars = 'n'
    vals = '3'
  [../]
  [./answer_d2RelPermMonomial]
    type = Grad2ParsedFunction
    direction = '1E-3 0 0'
    value = x^n
    vars = 'n'
    vals = '3'
  [../]

  [./answer_RelPermMonomial_zero]
    type = ParsedFunction
    value = if(x>simm,1,0)
    vars = 'simm'
    vals = '0.1'
  [../]
  [./answer_dRelPermMonomial_zero]
    type = GradParsedFunction
    direction = '1E-4 0 0'
    value = if(x>simm,1,0)
    vars = 'simm'
    vals = '0.1'
  [../]
  [./answer_d2RelPermMonomial_zero]
    type = Grad2ParsedFunction
    direction = '1E-3 0 0'
    value = if(x>simm,1,0)
    vars = 'simm'
    vals = '0.1'
  [../]

  [./answer_RelPermPowerGas]
    type = ParsedFunction
    value = 1-((n+1)*((1-x)^n))+(n*((1-x)^(n+1)))
    vars = 'n'
    vals = '5'
  [../]
  [./answer_dRelPermPowerGas]
    type = GradParsedFunction
    direction = '1E-4 0 0'
    value = 1-((n+1)*((1-x)^n))+(n*((1-x)^(n+1)))
    vars = 'n'
    vals = '5'
  [../]
  [./answer_d2RelPermPowerGas]
    type = Grad2ParsedFunction
    direction = '1E-5 0 0'
    value = 1-((n+1)*((1-x)^n))+(n*((1-x)^(n+1)))
    vars = 'n'
    vals = '5'
  [../]

  [./answer_Q2PRelPermPowerGas]
    type = ParsedFunction
    value = 1-((n+1)*(x^n))+(n*(x^(n+1)))
    vars = 'n'
    vals = '5'
  [../]
  [./answer_dQ2PRelPermPowerGas]
    type = GradParsedFunction
    direction = '1E-4 0 0'
    value = 1-((n+1)*(x^n))+(n*(x^(n+1)))
    vars = 'n'
    vals = '5'
  [../]
  [./answer_d2Q2PRelPermPowerGas]
    type = Grad2ParsedFunction
    direction = '1E-5 0 0'
    value = 1-((n+1)*(x^n))+(n*(x^(n+1)))
    vars = 'n'
    vals = '5'
  [../]
[]

[AuxVariables]
  [./RelPermPower_Aux]
  [../]
  [./dRelPermPower_Aux]
  [../]
  [./d2RelPermPower_Aux]
  [../]

  [./RelPermPower5_Aux]
  [../]
  [./dRelPermPower5_Aux]
  [../]
  [./d2RelPermPower5_Aux]
  [../]

  [./RelPermVG_Aux]
  [../]
  [./dRelPermVG_Aux]
  [../]
  [./d2RelPermVG_Aux]
  [../]

  [./RelPermVG1_Aux]
  [../]
  [./dRelPermVG1_Aux]
  [../]
  [./d2RelPermVG1_Aux]
  [../]

  [./RelPermBW_Aux]
  [../]
  [./dRelPermBW_Aux]
  [../]
  [./d2RelPermBW_Aux]
  [../]

  [./RelPermMonomial_Aux]
  [../]
  [./dRelPermMonomial_Aux]
  [../]
  [./d2RelPermMonomial_Aux]
  [../]

  [./RelPermPowerGas_Aux]
  [../]
  [./dRelPermPowerGas_Aux]
  [../]
  [./d2RelPermPowerGas_Aux]
  [../]

  [./Q2PRelPermPowerGas_Aux]
  [../]
  [./dQ2PRelPermPowerGas_Aux]
  [../]
  [./d2Q2PRelPermPowerGas_Aux]
  [../]

  [./RelPermMonomial_zero_Aux]
  [../]
  [./dRelPermMonomial_zero_Aux]
  [../]
  [./d2RelPermMonomial_zero_Aux]
  [../]

  [./check_Aux]
  [../]
[]

[AuxKernels]
  [./RelPermPower_AuxK]
    type = RichardsRelPermAux
    variable = RelPermPower_Aux
    relperm_UO = RelPermPower
    seff_var = pressure
  [../]
  [./dRelPermPower_AuxK]
    type = RichardsRelPermPrimeAux
    variable = dRelPermPower_Aux
    relperm_UO = RelPermPower
    seff_var = pressure
  [../]
  [./d2RelPermPower_AuxK]
    type = RichardsRelPermPrimePrimeAux
    variable = d2RelPermPower_Aux
    relperm_UO = RelPermPower
    seff_var = pressure
  [../]

  [./RelPermPower5_AuxK]
    type = RichardsRelPermAux
    variable = RelPermPower5_Aux
    relperm_UO = RelPermPower5
    seff_var = pressure
  [../]
  [./dRelPermPower5_AuxK]
    type = RichardsRelPermPrimeAux
    variable = dRelPermPower5_Aux
    relperm_UO = RelPermPower5
    seff_var = pressure
  [../]
  [./d2RelPermPower5_AuxK]
    type = RichardsRelPermPrimePrimeAux
    variable = d2RelPermPower5_Aux
    relperm_UO = RelPermPower5
    seff_var = pressure
  [../]

  [./RelPermVG_AuxK]
    type = RichardsRelPermAux
    variable = RelPermVG_Aux
    relperm_UO = RelPermVG
    seff_var = pressure
  [../]
  [./dRelPermVG_AuxK]
    type = RichardsRelPermPrimeAux
    variable = dRelPermVG_Aux
    relperm_UO = RelPermVG
    seff_var = pressure
  [../]
  [./d2RelPermVG_AuxK]
    type = RichardsRelPermPrimePrimeAux
    variable = d2RelPermVG_Aux
    relperm_UO = RelPermVG
    seff_var = pressure
  [../]

  [./RelPermVG1_AuxK]
    type = RichardsRelPermAux
    variable = RelPermVG1_Aux
    relperm_UO = RelPermVG1
    seff_var = pressure
  [../]
  [./dRelPermVG1_AuxK]
    type = RichardsRelPermPrimeAux
    variable = dRelPermVG1_Aux
    relperm_UO = RelPermVG1
    seff_var = pressure
  [../]
  [./d2RelPermVG1_AuxK]
    type = RichardsRelPermPrimePrimeAux
    variable = d2RelPermVG1_Aux
    relperm_UO = RelPermVG1
    seff_var = pressure
  [../]

  [./RelPermBW_AuxK]
    type = RichardsRelPermAux
    variable = RelPermBW_Aux
    relperm_UO = RelPermBW
    seff_var = pressure
  [../]
  [./dRelPermBW_AuxK]
    type = RichardsRelPermPrimeAux
    variable = dRelPermBW_Aux
    relperm_UO = RelPermBW
    seff_var = pressure
  [../]
  [./d2RelPermBW_AuxK]
    type = RichardsRelPermPrimePrimeAux
    variable = d2RelPermBW_Aux
    relperm_UO = RelPermBW
    seff_var = pressure
  [../]

  [./RelPermMonomial_AuxK]
    type = RichardsRelPermAux
    variable = RelPermMonomial_Aux
    relperm_UO = RelPermMonomial
    seff_var = pressure
  [../]
  [./dRelPermMonomial_AuxK]
    type = RichardsRelPermPrimeAux
    variable = dRelPermMonomial_Aux
    relperm_UO = RelPermMonomial
    seff_var = pressure
  [../]
  [./d2RelPermMonomial_AuxK]
    type = RichardsRelPermPrimePrimeAux
    variable = d2RelPermMonomial_Aux
    relperm_UO = RelPermMonomial
    seff_var = pressure
  [../]

  [./RelPermPowerGas_AuxK]
    type = RichardsRelPermAux
    variable = RelPermPowerGas_Aux
    relperm_UO = RelPermPowerGas
    seff_var = pressure
  [../]
  [./dRelPermPowerGas_AuxK]
    type = RichardsRelPermPrimeAux
    variable = dRelPermPowerGas_Aux
    relperm_UO = RelPermPowerGas
    seff_var = pressure
  [../]
  [./d2RelPermPowerGas_AuxK]
    type = RichardsRelPermPrimePrimeAux
    variable = d2RelPermPowerGas_Aux
    relperm_UO = RelPermPowerGas
    seff_var = pressure
  [../]

  [./Q2PRelPermPowerGas_AuxK]
    type = RichardsRelPermAux
    variable = Q2PRelPermPowerGas_Aux
    relperm_UO = Q2PRelPermPowerGas
    seff_var = pressure
  [../]
  [./dQ2PRelPermPowerGas_AuxK]
    type = RichardsRelPermPrimeAux
    variable = dQ2PRelPermPowerGas_Aux
    relperm_UO = Q2PRelPermPowerGas
    seff_var = pressure
  [../]
  [./d2Q2PRelPermPowerGas_AuxK]
    type = RichardsRelPermPrimePrimeAux
    variable = d2Q2PRelPermPowerGas_Aux
    relperm_UO = Q2PRelPermPowerGas
    seff_var = pressure
  [../]

  [./RelPermMonomial_zero_AuxK]
    type = RichardsRelPermAux
    variable = RelPermMonomial_zero_Aux
    relperm_UO = RelPermMonomial_zero
    seff_var = pressure
  [../]
  [./dRelPermMonomial_zero_AuxK]
    type = RichardsRelPermPrimeAux
    variable = dRelPermMonomial_zero_Aux
    relperm_UO = RelPermMonomial_zero
    seff_var = pressure
  [../]
  [./d2RelPermMonomial_zero_AuxK]
    type = RichardsRelPermPrimePrimeAux
    variable = d2RelPermMonomial_zero_Aux
    relperm_UO = RelPermMonomial_zero
    seff_var = pressure
  [../]

  [./check_AuxK]
    type = FunctionAux
    variable = check_Aux
    function = answer_RelPermBW
  [../]
[]

[Postprocessors]
  [./cf_RelPermPower]
    type = NodalL2Error
    function = answer_RelPermPower
    variable = RelPermPower_Aux
  [../]
  [./cf_dRelPermPower]
    type = NodalL2Error
    function = answer_dRelPermPower
    variable = dRelPermPower_Aux
  [../]
  [./cf_d2RelPermPower]
    type = NodalL2Error
    function = answer_d2RelPermPower
    variable = d2RelPermPower_Aux
  [../]

  [./cf_RelPermPower5]
    type = NodalL2Error
    function = answer_RelPermPower5
    variable = RelPermPower5_Aux
  [../]
  [./cf_dRelPermPower5]
    type = NodalL2Error
    function = answer_dRelPermPower5
    variable = dRelPermPower5_Aux
  [../]
  [./cf_d2RelPermPower5]
    type = NodalL2Error
    function = answer_d2RelPermPower5
    variable = d2RelPermPower5_Aux
  [../]

  [./cf_RelPermVG]
    type = NodalL2Error
    function = answer_RelPermVG
    variable = RelPermVG_Aux
  [../]
  [./cf_dRelPermVG]
    type = NodalL2Error
    function = answer_dRelPermVG
    variable = dRelPermVG_Aux
  [../]
  [./cf_d2RelPermVG]
    type = NodalL2Error
    function = answer_d2RelPermVG
    variable = d2RelPermVG_Aux
  [../]

  [./cf_RelPermVG1]
    type = NodalL2Error
    function = answer_RelPermVG1
    variable = RelPermVG1_Aux
  [../]
  [./cf_dRelPermVG1]
    type = NodalL2Error
    function = answer_dRelPermVG1
    variable = dRelPermVG1_Aux
  [../]
  [./cf_d2RelPermVG1]
    type = NodalL2Error
    function = answer_d2RelPermVG1
    variable = d2RelPermVG1_Aux
  [../]

  [./cf_RelPermBW]
    type = NodalL2Error
    function = answer_RelPermBW
    variable = RelPermBW_Aux
  [../]
  [./cf_dRelPermBW]
    type = NodalL2Error
    function = answer_dRelPermBW
    variable = dRelPermBW_Aux
  [../]
  [./cf_d2RelPermBW]
    type = NodalL2Error
    function = answer_d2RelPermBW
    variable = d2RelPermBW_Aux
  [../]

  [./cf_RelPermMonomial]
    type = NodalL2Error
    function = answer_RelPermMonomial
    variable = RelPermMonomial_Aux
  [../]
  [./cf_dRelPermMonomial]
    type = NodalL2Error
    function = answer_dRelPermMonomial
    variable = dRelPermMonomial_Aux
  [../]
  [./cf_d2RelPermMonomial]
    type = NodalL2Error
    function = answer_d2RelPermMonomial
    variable = d2RelPermMonomial_Aux
  [../]

  [./cf_RelPermPowerGas]
    type = NodalL2Error
    function = answer_RelPermPowerGas
    variable = RelPermPowerGas_Aux
  [../]
  [./cf_dRelPermPowerGas]
    type = NodalL2Error
    function = answer_dRelPermPowerGas
    variable = dRelPermPowerGas_Aux
  [../]
  [./cf_d2RelPermPowerGas]
    type = NodalL2Error
    function = answer_d2RelPermPowerGas
    variable = d2RelPermPowerGas_Aux
  [../]

  [./cf_Q2PRelPermPowerGas]
    type = NodalL2Error
    function = answer_Q2PRelPermPowerGas
    variable = Q2PRelPermPowerGas_Aux
  [../]
  [./cf_dQ2PRelPermPowerGas]
    type = NodalL2Error
    function = answer_dQ2PRelPermPowerGas
    variable = dQ2PRelPermPowerGas_Aux
  [../]
  [./cf_d2Q2PRelPermPowerGas]
    type = NodalL2Error
    function = answer_d2Q2PRelPermPowerGas
    variable = d2Q2PRelPermPowerGas_Aux
  [../]

  [./cf_RelPermMonomial_zero]
    type = NodalL2Error
    function = answer_RelPermMonomial_zero
    variable = RelPermMonomial_zero_Aux
  [../]
  [./cf_dRelPermMonomial_zero]
    type = NodalL2Error
    function = answer_dRelPermMonomial_zero
    variable = dRelPermMonomial_zero_Aux
  [../]
  [./cf_d2RelPermMonomial_zero]
    type = NodalL2Error
    function = answer_d2RelPermMonomial_zero
    variable = d2RelPermMonomial_zero_Aux
  [../]

[]



#############################################################################
#
# Following is largely unimportant as we are not running an actual similation
#
#############################################################################
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0.01
  xmax = 0.99
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    richardsVarNames_UO = PPNames
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    richardsVarNames_UO = PPNames
    variable = pressure
  [../]
[]

[Materials]
  [./unimportant_material]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-20 0 0  0 1E-20 0  0 0 1E-20'
    richardsVarNames_UO = PPNames
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower_unimportant
    sat_UO = Saturation
    seff_UO = SeffVG
    SUPG_UO = SUPGstandard
    viscosity = 1E-3
    gravity = '0 0 -10'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  [./does_nothing]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E50 1E50 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
  dt = 1E-100
[]

[Outputs]
  execute_on = 'timestep_end'
  active = 'csv'
  file_base = uo1
  [./csv]
    type = CSV
    [../]
  [./exodus]
    type = Exodus
    hide = pressure
  [../]
[]

test/tests/transfers/multiapp_userobject_transfer/tosub_displaced_master.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 20
  ny = 20
  nz = 20
  # The MultiAppUserObjectTransfer object only works with ReplicatedMesh
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./layered_average_value]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./layered_aux]
    type = SpatialUserObjectAux
    variable = layered_average_value
    execute_on = timestep_end
    user_object = layered_average
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 0
  [../]
  [./top]
    type = DirichletBC
    variable = u
    boundary = top
    value = 1
  [../]
[]

[UserObjects]
  [./layered_average]
    type = LayeredAverage
    variable = u
    direction = y
    num_layers = 4
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    execute_on = timestep_end
    positions = '0 0 0'
    type = TransientMultiApp
    input_files = tosub_displaced_sub.i
    app_type = MooseTestApp
  [../]
[]

[Transfers]
  [./layered_transfer]
    direction = to_multiapp
    user_object = layered_average
    variable = multi_layered_average
    type = MultiAppUserObjectTransfer
    multi_app = sub_app
    displaced_target_mesh = true
  [../]
  [./element_layered_transfer]
    direction = to_multiapp
    user_object = layered_average
    variable = element_multi_layered_average
    type = MultiAppUserObjectTransfer
    multi_app = sub_app
    displaced_target_mesh = true
  [../]
[]

modules/porous_flow/test/tests/heat_advection/heat_advection_1d_fully_saturated_action.i

# 1phase, heat advecting with a moving fluid
# Using the PorousFlowFullySaturated Action with KT stabilization
# This should produce an identical result to heat_advection_1D_KT
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 50
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./temp]
    initial_condition = 200
  [../]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = '1-x'
  [../]
[]

[BCs]
  [./pp0]
    type = DirichletBC
    variable = pp
    boundary = left
    value = 1
  [../]
  [./pp1]
    type = DirichletBC
    variable = pp
    boundary = right
    value = 0
  [../]
  [./spit_heat]
    type = DirichletBC
    variable = temp
    boundary = left
    value = 300
  [../]
  [./suck_heat]
    type = DirichletBC
    variable = temp
    boundary = right
    value = 200
  [../]
[]

[PorousFlowFullySaturated]
  porepressure = pp
  temperature = temp
  coupling_type = ThermoHydro
  fp = simple_fluid
  add_darcy_aux = false
  stabilization = KT
  flux_limiter_type = superbee
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 100
      density0 = 1000
      viscosity = 4.4
      thermal_expansion = 0
      cv = 2
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./zero_thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '0 0 0  0 0 0  0 0 0'
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.0
    density = 125
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.1 0 0 0 2 0 0 0 3'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.01
  end_time = 0.6
[]

[VectorPostprocessors]
  [./T]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 51
    sort_by = x
    variable = temp
  [../]
[]

[Outputs]
  file_base = heat_advection_1d_fully_saturation_action
  [./csv]
    type = CSV
    sync_times = '0.1 0.6'
    sync_only = true
  [../]
[]

test/tests/multiapps/restart_subapp_ic/sub2.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 10
[]

[Functions]
  [./u_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[Variables]
  [./u]
    initial_condition = 4.2
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./fn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = u_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

modules/peridynamics/test/tests/jacobian_check/3D_mechanics_smallstrain_NOSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 2

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 3
    ny = 3
    nz = 3
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeSmallStrainNOSPD
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

modules/tensor_mechanics/test/tests/drucker_prager/small_deform2_inner_edge.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1.5E-6*x+2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./mc]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    smoother = 4
    mc_interpolation_scheme = inner_edge
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_inner_edge
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update8_cosserat.i

# Cosserat version of Capped Mohr Columb (using StressUpdate)
# Tensile failure only, starting from a non-symmetric stress state, and
# using softening

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0
    internal_limit = 2E-3
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 3E3
    poisson = 0.2
    layer_thickness = 1.0
    joint_normal_stiffness = 1.0E3
    joint_shear_stiffness = 2.0E3
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 -1 0.5  1 1.9 0  0.5 0 3'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombCosseratStressUpdate
    host_youngs_modulus = 3E3
    host_poissons_ratio = 0.2
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/misc/ad_robustness/ad_two_nl_var_transient_diffusion_jac.i

penalty=1

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
[]

[Variables]
  [./u]
    family = MONOMIAL
    order = FIRST
  [../]
  [v]
    family = MONOMIAL
    order = FIRST
  []
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = ADTimeDerivative
    variable = u
  [../]
  [coupled]
    type = ADCoupledValueTest
    variable = u
    v = v
  []
  [v_diff]
    type = Diffusion
    variable = v
  []
[]

[DGKernels]
  [dummy]
    type = ADDGCoupledTest
    variable = u
    v = v
  []
[]

[BCs]
  [./left]
    type = PenaltyDirichletBC
    variable = u
    boundary = left
    value = 0
    penalty = ${penalty}
  [../]
  [./right]
    type = PenaltyDirichletBC
    variable = u
    boundary = right
    value = 1
    penalty = ${penalty}
  [../]
  [./left_v]
    type = PenaltyDirichletBC
    variable = v
    boundary = left
    value = 0
    penalty = ${penalty}
  [../]
  [./right_v]
    type = PenaltyDirichletBC
    variable = v
    boundary = right
    value = 1
    penalty = ${penalty}
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  dtmin = 0.1
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  [dof_map]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

modules/chemical_reactions/test/tests/exceptions/missing_gamma.i

# Missing activity coefficient in AqueousEquilibriumRxnAux AuxKernel

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[AuxVariables]
  [./c]
  [../]
  [./gamma_a]
  [../]
[]

[AuxKernels]
  [./c]
    type = AqueousEquilibriumRxnAux
    variable = c
    v = 'a b'
    gamma_v = gamma_a
    sto_v = '1 1'
    log_k = 1
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = porosity
    prop_values = 0.2
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
[]

modules/combined/test/tests/frictional_contact/single_point_2d/sm/single_point_2d_predictor_sm.i

[Mesh]
  file = single_point_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./horizontal_movement]
    type = ParsedFunction
    value = t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
  [../]
[]

[AuxKernels]
  [./incslip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./incslip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./botx2]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./boty2]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = -0.005
  [../]
[]

[Materials]
  [./bottom]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e9
  [../]
  [./top]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu    superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 200
  dt = 0.001
  end_time = 0.01
  num_steps = 1000
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  dtmin = 0.001
  l_tol = 1e-3

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = coulomb
    system = constraint
    friction_coefficient = '0.25'
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    master = '2'
    slave = '3'
  [../]
[]

modules/tensor_mechanics/test/tests/beam/static/euler_small_strain_y.i

# Test for small strain Euler beam bending in y direction

# A unit load is applied at the end of a cantilever beam of length 4m.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 2.60072400269
# Shear modulus (G) = 1.0e4
# Poisson's ratio (nu) = -0.9998699638
# Shear coefficient (k) = 0.85
# Cross-section area (A) = 0.554256
# Iy = 0.0141889 = Iz
# Length = 4 m

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 2.04e6

# The small deformation analytical deflection of the beam is given by
# delta = PL^3/3EI * (1 + 3.0 / alpha) = PL^3/3EI = 5.78e-2 m

# Using 10 elements to discretize the beam element, the FEM solution is 5.766e-2 m.
# The ratio beam FEM solution and analytical solution is 0.998.

# References:
# Prathap and Bhashyam (1982), International journal for numerical methods in engineering, vol. 18, 195-210.
# Note that the force is scaled by 1e-4 compared to the reference problem.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = ConstantRate
    variable = disp_y
    boundary = right
    rate = 1.0e-4
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 2.60072400269
    poissons_ratio = -0.9998699638
    shear_coefficient = 0.85
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.554256
    Ay = 0.0
    Az = 0.0
    Iy = 0.0141889
    Iz = 0.0141889
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/poroperm/poro_thm.i

# Test that porosity is correctly calculated.
# Porosity = biot + (phi0 - biot) * exp(-vol_strain + (biot - 1) / solid_bulk * (porepressure - ref_pressure) + thermal_exp_coeff * (temperature - ref_temperature))
# The parameters used are:
# biot = 0.7
# phi0 = 0.5
# vol_strain = 0.5
# solid_bulk = 0.3
# porepressure = 2
# ref_pressure = 3
# thermal_exp_coeff = 0.5
# temperature = 4
# ref_temperature = 3.5
# which yield porosity = 0.276599996677
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
  biot_coefficient = 0.7
[]

[Variables]
  [./porepressure]
    initial_condition = 2
  [../]
  [./temperature]
    initial_condition = 4
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[ICs]
  [./disp_x]
    type = FunctionIC
    function = '0.5 * x'
    variable = disp_x
  [../]
[]

[Kernels]
  [./dummy_p]
    type = TimeDerivative
    variable = porepressure
  [../]
  [./dummy_t]
    type = TimeDerivative
    variable = temperature
  [../]
  [./dummy_x]
    type = TimeDerivative
    variable = disp_x
  [../]
  [./dummy_y]
    type = TimeDerivative
    variable = disp_y
  [../]
  [./dummy_z]
    type = TimeDerivative
    variable = disp_z
  [../]
[]

[AuxVariables]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[Postprocessors]
  [./porosity]
    type = PointValue
    variable = porosity
    point = '0 0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure temperature'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./porosity]
    type = PorousFlowPorosity
    mechanical = true
    fluid = true
    thermal = true
    ensure_positive = false
    porosity_zero = 0.5
    solid_bulk = 0.3
    thermal_expansion_coeff = 0.5
    reference_porepressure = 3
    reference_temperature = 3.5
  [../]
[]

[Executioner]
  solve_type = Newton
  type = Transient
  num_steps = 1
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_3/plane3_mu_0_2_pen.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane3_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = plane3_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = plane3_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/porous_flow/test/tests/heat_advection/heat_advection_1d_fully_saturated.i

# 1phase, heat advecting with a moving fluid
# Using the FullySaturated Kernel
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 50
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./temp]
    initial_condition = 200
  [../]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = '1-x'
  [../]
[]

[BCs]
  [./pp0]
    type = DirichletBC
    variable = pp
    boundary = left
    value = 1
  [../]
  [./pp1]
    type = DirichletBC
    variable = pp
    boundary = right
    value = 0
  [../]
  [./spit_heat]
    type = DirichletBC
    variable = temp
    boundary = left
    value = 300
  [../]
  [./suck_heat]
    type = DirichletBC
    variable = temp
    boundary = right
    value = 200
  [../]
[]

[Kernels]
  [./mass_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./advection]
    type = PorousFlowFullySaturatedDarcyBase
    variable = pp
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
  [./convection]
    type = PorousFlowFullySaturatedHeatAdvection
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 100
      density0 = 1000
      viscosity = 4.4
      thermal_expansion = 0
      cv = 2
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.0
    density = 125
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.1 0 0 0 2 0 0 0 3'
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./PS]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.01
  end_time = 0.6
[]

[VectorPostprocessors]
  [./T]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 51
    sort_by = x
    variable = temp
  [../]
[]

[Outputs]
  file_base = heat_advection_1d_fully_saturated
  [./csv]
    type = CSV
    sync_times = '0.1 0.6'
    sync_only = true
  [../]
[]

modules/tensor_mechanics/test/tests/ad_elastic/rz_incremental_small_elastic-noad.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
  [./disp_z]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = StressDivergenceRZTensors
    component = 0
    variable = disp_r
  [../]
  [./stress_z]
    type = StressDivergenceRZTensors
    component = 1
    variable = disp_z
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0
  [../]
  [./axial]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
  [./strain]
    type = ComputeAxisymmetricRZIncrementalStrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
  file_base = rz_incremental_small_elastic_out
[]

modules/porous_flow/test/tests/chemistry/dissolution.i

# The dissolution reaction
#
# a <==> mineral
#
# produces "mineral".  Using mineral_density = fluid_density, theta = 1 = eta, the DE is
#
# a' = -(mineral / porosity)' = rate * surf_area * molar_vol (1 - (1 / eqm_const) * (act_coeff * a)^stoi)
#
# The following parameters are used
#
# T_ref = 0.5 K
# T = 1 K
# activation_energy = 3 J/mol
# gas_constant = 6 J/(mol K)
# kinetic_rate_at_ref_T = 0.60653 mol/(m^2 s)
# These give rate = 0.60653 * exp(1/2) = 1 mol/(m^2 s)
#
# surf_area = 0.5 m^2/L
# molar_volume = 2 L/mol
# These give rate * surf_area * molar_vol = 1 s^-1
#
# equilibrium_constant = 0.5 (dimensionless)
# primary_activity_coefficient = 2 (dimensionless)
# stoichiometry = 1 (dimensionless)
# This means that 1 - (1 / eqm_const) * (act_coeff * a)^stoi = 1 - 4 a, which is positive for a < 0.25, ie dissolution for a(t=0) < 0.25
#
# The solution of the DE is
# a = eqm_const / act_coeff + (a(t=0) - eqm_const / act_coeff) exp(-rate * surf_area * molar_vol * act_coeff * t / eqm_const)
#   = 0.25 + (a(t=0) - 0.25) exp(-4 * t)
# c = c(t=0) - (a - a(t=0)) * porosity
#
# This test checks that (a + c / porosity) is time-independent, and that a follows the above solution
#
# Aside:
#    The exponential curve is not followed exactly because moose actually solves
#    (a - a_old)/dt = rate * surf_area * molar_vol (1 - (1 / eqm_const) * (act_coeff * a)^stoi)
#    which does not give an exponential exactly, except in the limit dt->0
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.05
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 0.5
  [../]
  [./pressure]
  [../]
  [./ini_mineral_conc]
    initial_condition = 0.3
  [../]
  [./mineral]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./should_be_static]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./mineral]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = mineral
  [../]
  [./should_be_static]
    type = ParsedAux
    args = 'mineral a'
    function = 'a + mineral / 0.1'
    variable = should_be_static
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./mass_a]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = a
  [../]
  [./pre_dis]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1000
    stoichiometry = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = a
    number_fluid_phases = 1
    number_fluid_components = 2
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9 # huge, so mimic chemical_reactions
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 1
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./mass_frac]
    type = PorousFlowMassFraction
    mass_fraction_vars = a
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = a
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = 2
    reactions = 1
    specific_reactive_surface_area = 0.5
    kinetic_rate_constant = 0.6065306597126334
    activation_energy = 3
    molar_volume = 2
    gas_constant = 6
    reference_temperature = 0.5
  [../]
  [./mineral_conc]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_mineral_conc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]


[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1E-10
  dt = 0.01
  end_time = 1
[]

[Postprocessors]
  [./a]
    type = PointValue
    point = '0 0 0'
    variable = a
  [../]
  [./should_be_static]
    type = PointValue
    point = '0 0 0'
    variable = should_be_static
  [../]
[]
[Outputs]
  interval = 10
  csv = true
  perf_graph = true
[]

test/tests/nodalkernels/scaling/scaling.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 40
[]

[Variables]
  [u][]
[]

[NodalKernels]
  [time]
    type = CoefTimeDerivativeNodalKernel
    variable = u
    coeff = 2
  []
  [reaction]
    type = ReactionNodalKernel
    variable = u
    coeff = 2
  []
  [ffn]
    type = UserForcingFunctionNodalKernel
    variable = u
    function = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  automatic_scaling = true
  verbose = true
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/tutorials/basics/part_2.3.i

#Tensor Mechanics tutorial: the basics
#Step 2, part 3
#2D axisymmetric RZ simulation of uniaxial tension with J2 plasticity with no
#hardening

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = necking_quad4.e
  uniform_refine = 0
  second_order = true
[]

[Modules/TensorMechanics/Master]
  [./block1]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_yy strain_yy' #use the yy option to get the zz component in axisymmetric coords
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1e-9
    plastic_models = J2
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 2.4e2
  [../]
  [./J2]
    type = TensorMechanicsPlasticJ2
    yield_strength = str
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = top
    function = '0.0007*t'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.25
  end_time = 20

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm lu 1 101'
[]

[Postprocessors]
  [./ave_stress_bottom]
    type = SideAverageValue
    variable = stress_yy
    boundary = bottom
  [../]
  [./ave_strain_bottom]
    type = SideAverageValue
    variable = strain_yy
    boundary = bottom
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
  csv = true
  print_linear_residuals = false
[]

modules/porous_flow/test/tests/dirackernels/bh_except01.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 1
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/combined/test/tests/nodal_area/nodal_area_Hex20_3.i

[Mesh]
  file = nodal_area_Hex20.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'displ_x displ_y displ_z'
[]

[Functions]
  [./disp]
    type = PiecewiseLinear
    x = '0     1'
    y = '0  20e-6'
  [../]
[]

[Variables]
  [./displ_x]
  [../]
  [./displ_y]
  [../]
  [./displ_z]
  [../]
[]

[AuxVariables]
  [./react_x]
  [../]
  [./react_y]
  [../]
  [./react_z]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    incremental = true
    save_in = 'react_x react_y react_z'
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx'
  [../]
[]

[BCs]
  [./move_right]
    type = FunctionDirichletBC
    boundary = '1'
    variable = displ_x
    function = disp
  [../]

  [./fixed_x]
    type = DirichletBC
    boundary = '3 4'
    variable = displ_x
    value = 0
  [../]

  [./fixed_y]
    type = DirichletBC
    boundary = 10
    variable = displ_y
    value = 0
  [../]

  [./fixed_z]
    type = DirichletBC
    boundary = 11
    variable = displ_z
    value = 0
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    formulation = penalty
    penalty = 1e9
    tangential_tolerance = 1e-5
    system = Constraint
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'
  nl_rel_tol = 1e-7
  l_tol = 1e-4
  l_max_its = 40
  nl_max_its = 10

  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./react_x]
    type = NodalSum
    variable = react_x
    boundary = 1
  [../]
  [./total_area]
    type = NodalSum
    variable = nodal_area_dummy_name
    boundary = 2
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/hyperelastic_viscoplastic/one_elem_base.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
    base_name = test
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./peeq]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = test_stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = test_fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./peeq]
    type = MaterialRealAux
    variable = peeq
    property = ep_eqv
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = '0.01*t'
  [../]
[]

[UserObjects]
  [./flowstress]
    type = HEVPRambergOsgoodHardening
    yield_stress = 100
    hardening_exponent = 0.1
    reference_plastic_strain = 0.002
    intvar_prop_name = ep_eqv
  [../]
  [./flowrate]
    type = HEVPFlowRatePowerLawJ2
    reference_flow_rate = 0.0001
    flow_rate_exponent = 50.0
    flow_rate_tol = 1
    strength_prop_name = flowstress
    base_name = test
  [../]
  [./ep_eqv]
     type = HEVPEqvPlasticStrain
     intvar_rate_prop_name = ep_eqv_rate
  [../]
  [./ep_eqv_rate]
     type = HEVPEqvPlasticStrainRate
     flow_rate_prop_name = flowrate
  [../]
[]

[Materials]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'ux uy uz'
    base_name = test
  [../]
  [./viscop]
    type = FiniteStrainHyperElasticViscoPlastic
    block = 0
    resid_abs_tol = 1e-18
    resid_rel_tol = 1e-8
    maxiters = 50
    max_substep_iteration = 5
    flow_rate_user_objects = 'flowrate'
    strength_user_objects = 'flowstress'
    internal_var_user_objects = 'ep_eqv'
    internal_var_rate_user_objects = 'ep_eqv_rate'
    base_name = test
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '2.8e5 1.2e5 1.2e5 2.8e5 1.2e5 2.8e5 0.8e5 0.8e5 0.8e5'
    fill_method = symmetric9
    base_name = test
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./peeq]
    type = ElementAverageValue
    variable = peeq
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.02
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  dtmax = 10.0
  nl_rel_tol = 1e-10
  dtmin = 0.02
  num_steps = 10
[]

[Outputs]
  file_base = one_elem_base
  exodus = true
  csv = false
[]

modules/phase_field/test/tests/mobility_derivative/mobility_derivative_direct_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 12
  ny = 12
  xmax = 30
  ymax = 30
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 15
    y1 = 15
    radius = 10
    variable = c
    int_width = 3
    invalue = 1
    outvalue = -1
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./kappa]
    type = GenericConstantMaterial
    prop_names = 'kappa_c'
    prop_values = '2.0'
  [../]
  [./mob]
    type = DerivativeParsedMaterial
    f_name = M
    args = c
    function = 'if(c<-1,0.1,if(c>1,0.1,1-.9*c^2))'
    outputs = exodus
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 15
  l_tol = 1.0e-4
  nl_max_its = 10
  nl_rel_tol = 1.0e-8

  start_time = 0.0
  num_steps = 2
  dt = 0.9
[]

[Outputs]
  exodus = true
[]

test/tests/bcs/periodic/wedge_sys.i

[Mesh]
  file = wedge.e
[]

[Functions]
  active = 'tr_x tr_y'

  [./tr_x]
    type = ParsedFunction
    value = -x
  [../]

  [./tr_y]
    type = ParsedFunction
    value = y
  [../]
[]

[Variables]
  active = 'u temp'
#  active = 'temp'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff forcing dot dot_T diff_T'
#  active = 'dot_T diff_T'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
    x_center = -0.5
    y_center = 3.0
    x_spread = 0.2
    y_spread = 0.2
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]

  [./dot_T]
    type = TimeDerivative
    variable = temp
  [../]

  [./diff_T]
    type = Diffusion
    variable = temp
  [../]
[]

[BCs]
  #active = ' '

  [./Periodic]
    [./x]
      primary = 1
      secondary = 2
      transform_func = 'tr_x tr_y'
      inv_transform_func = 'tr_x tr_y'
      variable = u
    [../]
  [../]

  [./left_temp]
    type = DirichletBC
    value = 0
    boundary = 1
    variable = temp
  [../]

  [./right_temp]
    type = DirichletBC
    value = 1
    boundary = 2
    variable = temp
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  num_steps = 6
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_wedge_sys
  exodus = true
[]

test/tests/functions/piecewise_multilinear/except5.i

# PiecewiseMultilinear function exception test
# No valid AXIS lines in the data_file

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 2
  nx = 1
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./f]
  [../]
[]

[AuxKernels]
  [./f_auxK]
    type = FunctionAux
    variable = f
    function = except5_fcn
  [../]
[]


[Functions]
  [./except5_fcn]
    type = PiecewiseMultilinear
    data_file = except5.txt
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  hide = dummy
[]

modules/porous_flow/test/tests/poro_elasticity/mandel_fully_saturated.i

# Mandel's problem of consolodation of a drained medium
# Using the FullySaturatedDarcyBase and FullySaturatedMassTimeDerivative kernels
# Note the use of consistent_with_displaced_mesh = false in the calculation of volumetric strain
#
# A sample is in plane strain.
# -a <= x <= a
# -b <= y <= b
# It is squashed with constant force by impermeable, frictionless plattens on its top and bottom surfaces (at y=+/-b)
# Fluid is allowed to leak out from its sides (at x=+/-a)
# The porepressure within the sample is monitored.
#
# As is common in the literature, this is simulated by
# considering the quarter-sample, 0<=x<=a and 0<=y<=b, with
# impermeable, roller BCs at x=0 and y=0 and y=b.
# Porepressure is fixed at zero on x=a.
# Porepressure and displacement are initialised to zero.
# Then the top (y=b) is moved downwards with prescribed velocity,
# so that the total force that is inducing this downwards velocity
# is fixed.  The velocity is worked out by solving Mandel's problem
# analytically, and the total force is monitored in the simulation
# to check that it indeed remains constant.
#
# Here are the problem's parameters, and their values:
# Soil width.  a = 1
# Soil height.  b = 0.1
# Soil's Lame lambda.  la = 0.5
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = G = 0.75
# Soil bulk modulus.  K = la + 2*mu/3 = 1
# Drained Poisson ratio.  nu = (3K - 2G)/(6K + 2G) = 0.2
# Soil bulk compliance.  1/K = 1
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Biot modulus.  M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 4.705882
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.694118
# Undrained Poisson ratio.  nuu = (3Ku - 2G)/(6Ku + 2G) = 0.372627
# Skempton coefficient.  B = alpha*M/Ku = 1.048035
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Consolidation coefficient.  c = 2*k*B^2*G*(1-nu)*(1+nuu)^2/9/(1-nuu)/(nuu-nu) = 3.821656
# Normal stress on top.  F = 1
#
# The solution for porepressure and displacements is given in
# AHD Cheng and E Detournay "A direct boundary element method for plane strain poroelasticity" International Journal of Numerical and Analytical Methods in Geomechanics 12 (1988) 551-572.
# The solution involves complicated infinite series, so I shall not write it here

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 0.1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./roller_xmin]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left'
  [../]
  [./roller_ymin]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom'
  [../]
  [./plane_strain]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
  [./xmax_drained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = right
  [../]
  [./top_velocity]
    type = FunctionDirichletBC
    variable = disp_y
    function = top_velocity
    boundary = top
  [../]
[]

[Functions]
  [./top_velocity]
    type = PiecewiseLinear
    x = '0 0.002 0.006   0.014   0.03    0.046   0.062   0.078   0.094   0.11    0.126   0.142   0.158   0.174   0.19 0.206 0.222 0.238 0.254 0.27 0.286 0.302 0.318 0.334 0.35 0.366 0.382 0.398 0.414 0.43 0.446 0.462 0.478 0.494 0.51 0.526 0.542 0.558 0.574 0.59 0.606 0.622 0.638 0.654 0.67 0.686 0.702'
    y = '-0.041824842    -0.042730269    -0.043412712    -0.04428867     -0.045509181    -0.04645965     -0.047268246 -0.047974749      -0.048597109     -0.0491467  -0.049632388     -0.050061697      -0.050441198     -0.050776675     -0.051073238      -0.0513354 -0.051567152      -0.051772022     -0.051953128 -0.052113227 -0.052254754 -0.052379865 -0.052490464 -0.052588233 -0.052674662 -0.052751065 -0.052818606 -0.052878312 -0.052931093 -0.052977751 -0.053018997 -0.053055459 -0.053087691 -0.053116185 -0.053141373 -0.05316364 -0.053183324 -0.053200724 -0.053216106 -0.053229704 -0.053241725 -0.053252351 -0.053261745 -0.053270049 -0.053277389 -0.053283879 -0.053289615'
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_force]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./tot_force]
    type = ParsedAux
    args = 'stress_yy porepressure'
    execute_on = timestep_end
    variable = tot_force
    function = '-stress_yy+0.6*porepressure'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    component = 2
    variable = disp_z
  [../]
  [./mass0]
    type = PorousFlowFullySaturatedMassTimeDerivative
    biot_coefficient = 0.6
    coupling_type = HydroMechanical
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowFullySaturatedDarcyBase
    variable = porepressure
    gravity = '0 0 0'
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 8
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure_qp]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
    consistent_with_displaced_mesh = false
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # only the initial value of this is ever used
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.6
    solid_bulk_compliance = 1
    fluid_bulk_modulus = 8
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0.0 0 0'
    variable = porepressure
  [../]
  [./p1]
    type = PointValue
    outputs = csv
    point = '0.1 0 0'
    variable = porepressure
  [../]
  [./p2]
    type = PointValue
    outputs = csv
    point = '0.2 0 0'
    variable = porepressure
  [../]
  [./p3]
    type = PointValue
    outputs = csv
    point = '0.3 0 0'
    variable = porepressure
  [../]
  [./p4]
    type = PointValue
    outputs = csv
    point = '0.4 0 0'
    variable = porepressure
  [../]
  [./p5]
    type = PointValue
    outputs = csv
    point = '0.5 0 0'
    variable = porepressure
  [../]
  [./p6]
    type = PointValue
    outputs = csv
    point = '0.6 0 0'
    variable = porepressure
  [../]
  [./p7]
    type = PointValue
    outputs = csv
    point = '0.7 0 0'
    variable = porepressure
  [../]
  [./p8]
    type = PointValue
    outputs = csv
    point = '0.8 0 0'
    variable = porepressure
  [../]
  [./p9]
    type = PointValue
    outputs = csv
    point = '0.9 0 0'
    variable = porepressure
  [../]
  [./p99]
    type = PointValue
    outputs = csv
    point = '1 0 0'
    variable = porepressure
  [../]
  [./xdisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_x
  [../]
  [./ydisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_y
  [../]
  [./total_downwards_force]
     type = ElementAverageValue
     outputs = csv
     variable = tot_force
  [../]
  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.15*t<0.01,0.15*t,0.01)
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres asm lu 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 0.7
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.001
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mandel_fully_saturated
  [./csv]
    interval = 3
    type = CSV
  [../]
[]

modules/combined/test/tests/solid_mechanics/LinearStrainHardening/sm/LinearStrainHardening_test_sm.i

#
[GlobalParams]
  volumetric_locking_correction = false
[]

[Mesh]
  file = LinearStrainHardening_test.e

  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_mag]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t/5.0
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]

  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]

  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]

  [./plastic_strain_mag]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = plastic_strain_mag
  [../]

 []


[BCs]

  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

[]

[Materials]
  [./constant]
    type = LinearStrainHardening
    block = 1
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
    yield_stress = 2.4e2
    hardening_constant = 1206
    relative_tolerance = 1e-25
    absolute_tolerance = 1e-5
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
  start_time = 0.0
  end_time = 0.0105
#  num_steps = 100
  dt = 1.5e-3
[]



[Outputs]
  exodus = true
  file_base = LinearStrainHardeningRestart2_sm_out
[]

modules/richards/test/tests/gravity_head_1/gh11.i

# unsaturated = false
# gravity = true
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGnone
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh11
  exodus = true
[]

modules/tensor_mechanics/test/tests/thermal_expansion_function/small_linear.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function is a linear function
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# This version of the test uses small deformation theory.  The results
# from the two models are identical.

[Mesh]
  file = 'blocks.e'
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeLinearElasticStress
  [../]
  [./thermal_expansion_strain1]
    type = ComputeMeanThermalExpansionFunctionEigenstrain
    block = 1
    thermal_expansion_function = cte_func_mean
    thermal_expansion_function_reference_temperature = 0.5
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
  [./thermal_expansion_strain2]
    type = ComputeInstantaneousThermalExpansionFunctionEigenstrain
    block = 2
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (0.5 * t^2 - 0.5 * tsf^2) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 0.0
               2 2.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

test/tests/functions/image_function/error/check_error.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./tif]
    type = ImageFunction
    file_base = stack/test
    file_suffix = png
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = tif
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[../]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

test/tests/predictors/simple/predictor_reference_residual_test.i

# The purpose of this test is to ensure the SimplePredictor resets the std::precision

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
    extra_vector_tags = 'ref'
  [../]
[]

[BCs]
  [./bot]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 0.0
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = u
    boundary = top
    function = 't'
  [../]
[]

[Executioner]
  type = Transient

  start_time = 0.0
  dt = 0.5
  end_time = 1.0

  [./Predictor]
    type = SimplePredictor
    scale = 1.0e-10
  [../]
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest10.i

# 2D, removal of a block containing a sideset inside it
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0
  xmax = 5
  ymin = 0
  ymax = 5
[]

[MeshModifiers]
  [./left]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '2 2 0'
    top_right = '3 3 1'
  [../]
  [./right]
    type = SubdomainBoundingBox
    block_id = 2
    bottom_left = '3 2 0'
    top_right = '4 3 1'
  [../]
  [./interior_sideset]
    type = SideSetsBetweenSubdomains
    master_block = 1
    paired_block = 2
    depends_on = 'left right'
    new_boundary = interior_ss
  [../]
  [./new_block_number]
    type = SubdomainBoundingBox
    block_id = 3
    bottom_left = '0 0 0'
    top_right = '4 4 1'
    depends_on = 'interior_sideset'
  [../]
  [./ed0]
    type = BlockDeleter
    block_id = 3
    depends_on = 'new_block_number'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/bcs/periodic/auto_periodic_bc_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  nz = 0
  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./periodic_dist]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff forcing dot'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./periodic_dist]
    type = PeriodicDistanceAux
    variable = periodic_dist
    point = '4 6 0'
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 20
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_auto
  exodus = true
[]

test/tests/meshgenerators/mesh_side_set_generator/mesh_side_set_generator.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 4
    ny = 4
    nz = 4
    elem_type = TET4
  []

  [./left_block]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    block_name = left_block
    bottom_left = '0 0 0'
    top_right = '0.5 1 1'
  []

  [./right_block]
    type = SubdomainBoundingBoxGenerator
    input = left_block
    block_id = 2
    block_name = right_block
    bottom_left = '0.5 0 0'
    top_right = '1 1 1'
  []

  [./center_side_set]
    type = SideSetsBetweenSubdomainsGenerator
    input = right_block
    master_block = left_block
    paired_block = right_block
    new_boundary = center_side_set
  []

  [./center_mesh]
    type = MeshSideSetGenerator
    input = center_side_set
    boundaries = center_side_set
    block_id = 10
    block_name = center_mesh
  []
[]

[Variables]
  [./c_volume]
    [./InitialCondition]
      type = FunctionIC
      function = '1-(x-0.5)^2+(y-0.5)^2+(z-0.5)^2'
    [../]
  [../]
  [./c_plane]
    block = 'center_mesh'
  [../]
[]

[Kernels]
  [./volume_diff]
    type = Diffusion
    variable = c_volume
    block = 'left_block right_block'
  [../]
  [./volume_dt]
    type = TimeDerivative
    variable = c_volume
    block = 'left_block right_block'
  [../]

  # couple the lower dimensional variable to the volume variable
  [./plane_reaction]
    type = Reaction
    variable = c_plane
    block = 'center_mesh'
  [../]
  [./plane_coupled]
    type = CoupledForce
    variable = c_plane
    v = c_volume
    block = 'center_mesh'
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.01
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/poroperm/poro_tm.i

# Test that porosity is correctly calculated.
# Porosity = 1 + (phi0 - 1) * exp(-vol_strain + thermal_exp_coeff * (temperature - ref_temperature))
# The parameters used are:
# phi0 = 0.5
# vol_strain = 0.5
# thermal_exp_coeff = 0.5
# temperature = 4
# ref_temperature = 3.5
# which yield porosity = 0.610599608464
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./porepressure]
    initial_condition = 2
  [../]
  [./temperature]
    initial_condition = 4
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[ICs]
  [./disp_x]
    type = FunctionIC
    function = '0.5 * x'
    variable = disp_x
  [../]
[]

[Kernels]
  [./dummy_p]
    type = TimeDerivative
    variable = porepressure
  [../]
  [./dummy_t]
    type = TimeDerivative
    variable = temperature
  [../]
  [./dummy_x]
    type = TimeDerivative
    variable = disp_x
  [../]
  [./dummy_y]
    type = TimeDerivative
    variable = disp_y
  [../]
  [./dummy_z]
    type = TimeDerivative
    variable = disp_z
  [../]
[]

[AuxVariables]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[Postprocessors]
  [./porosity]
    type = PointValue
    variable = porosity
    point = '0 0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure temperature'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./porosity]
    type = PorousFlowPorosity
    mechanical = true
    thermal = true
    ensure_positive = false
    porosity_zero = 0.5
    thermal_expansion_coeff = 0.5
    reference_temperature = 3.5
  [../]
[]

[Executioner]
  solve_type = Newton
  type = Transient
  num_steps = 1
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian_damper/cube_load.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  displacements = 'disp_x disp_y disp_z'
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./total_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1     2'
    y = '0 0.025 0.05'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]

  [./total_strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_yy
    index_i = 1
    index_j = 1
  [../]
[]


[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 3
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 0
    value = 0.0
  [../]
[]

[Postprocessors]
  [./stress_yy_el]
    type = ElementalVariableValue
    variable = stress_yy
    elementid = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 2e5
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Dampers]
  [./disp_x_damp]
    type = ElementJacobianDamper
    max_increment = 0.002
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 2
  dt = 1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/torque_reaction/disp_about_axis_axial_motion.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[GlobalParams]
  volumetric_locking_correction=true
[]

[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1.
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type =  RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = VonMisesStress
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]

  [./top_x]
    type = DisplacementAboutAxis
    boundary = top
    function = rampConstant
    angle_units = degrees
    axis_origin = '0. 0. 0.'
    axis_direction = '0. 0. 1.'
    component = 0
    variable = disp_x
  [../]

  [./top_y]
    type = DisplacementAboutAxis
    boundary = top
    function = rampConstant
    angle_units = degrees
    axis_origin = '0. 0. 0.'
    axis_direction = '0. 0. 1.'
    component = 1
    variable = disp_y
  [../]

# Because want to keep the rotation fixed about the z axis,
# do not apply a DisplacementAboutAxis BC on the disp_z
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]


[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-8

  start_time = 0.0
  dt = 0.1
  dtmin = 0.1 # die instead of cutting the timestep

  end_time = 0.5
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
[]


[Outputs]
  file_base = disp_about_axis_axial_motion_out
  exodus = true
[]

test/tests/controls/time_periods/error/control.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Dampers]
  [./const_damp]
    type = ConstantDamper
    damping = 0.9
  [../]
[]

[Outputs]
[]

[Controls]
  [./damping_control]
    type = TimePeriod
    disable_objects = 'const_damp'

    # Note: These numbers are quoted to get around an issue when
    # overriding numeric types with vectors of numeric types
    # on the CLI. They are still interpreted as numbers.
    start_time = '0.25'
    end_time = '0.55'
    execute_on = 'initial timestep_begin'
  [../]
[]

modules/solid_mechanics/test/tests/volumetric_eigenstrain/volumetric_eigenstrain.i

# This tests the ability of the SolidMechanics system to exactly recover
# a specified volumetric expansion.
# This model applies volumetric strain that ramps from 0 to 2 to a unit cube
# and computes the final volume, which should be exactly 3.  Note that the default
# Taylor expansion option for increment_calculation gives a small (~4%) error
# with this very large incremental strain, but increment_calculation = Eigen
# gives the exact solution.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./volumetric_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    initial_condition = 0
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]
  [./volumetric_strain]
    type = MaterialTensorAux
    tensor = total_strain
    variable = volumetric_strain
    quantity = VolumetricStrain
  [../]
  [./temp]
    type = FunctionAux
    variable = temp
    function = pres_temp
  [../]
[]

[Functions]
  [pres_temp]
    type = PiecewiseLinear
    # Because SolidMechanics does not offer a way to directly prescribe the
    # volumetric eigenstrain, we do this by prescribing a thermal strain.  The
    # CTE of the material is set to 1, so the numbers here are the linear strains
    # that are applied. The engineering linear strains that give a volumetric
    # strain equal to 1 at time 1 and 2 at time 2 are commented out below. These
    # are converted to log strains as log(1+linear_strain):
    xy_data = '0 0
               1 0.23104906018664598
               2 0.3662040962227044'

    # Linear strains that these are computed from:
    # xy_data = '0 0
    #            1 0.25992104989487
    #            2 0.44224957030741'
  []
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    increment_calculation = Eigen
    block = 0
    thermal_expansion = 1.0
    stress_free_temperature = 0.0
    temp = temp
  [../]
[]

[Postprocessors]
  [./vol]
    type = VolumePostprocessor
    use_displaced_mesh = true
    execute_on = 'initial timestep_end'
  [../]
  [./volumetric_strain]
    type = ElementalVariableValue
    variable = volumetric_strain
    elementid = 0
  [../]
  [./disp_right]
    type = NodalMaxValue
    variable = disp_x
    boundary = right
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 2.0
  dt = 1.0
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/porous_flow/examples/flow_through_fractured_media/fine_transient.i

# Using a mixed-dimensional mesh
# Transient flow and solute transport along a fracture in a porous matrix
# advective dominated flow in the fracture and diffusion into the porous matrix
#
# Note that fine_steady.i must be run to initialise the porepressure properly

[Mesh]
  file = 'gold/fine_steady_out.e'
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pp]
    initial_from_file_var = pp
    initial_from_file_timestep = 1
  [../]
  [./massfrac0]
  [../]
[]

[AuxVariables]
  [./velocity_x]
    family = MONOMIAL
    order = CONSTANT
    block = fracture
  [../]
  [./velocity_y]
    family = MONOMIAL
    order = CONSTANT
    block = fracture
  [../]
[]

[AuxKernels]
  [./velocity_x]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = velocity_x
    component = x
    aperture = 6E-4
  [../]
  [./velocity_y]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = velocity_y
    component = y
    aperture = 6E-4
  [../]
[]

[ICs]
  [./massfrac0]
    type = ConstantIC
    variable = massfrac0
    value = 0
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    value = 0
    variable = massfrac0
    boundary = top
  [../]
  [./bottom]
    type = DirichletBC
    value = 1
    variable = massfrac0
    boundary = bottom
  [../]
  [./ptop]
    type = DirichletBC
    variable = pp
    boundary =  top
    value = 1e6
  [../]
  [./pbottom]
    type = DirichletBC
    variable = pp
    boundary = bottom
    value = 1.002e6
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
  [../]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = pp
    disp_trans = 0
    disp_long = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = massfrac0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = massfrac0
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    disp_trans = 0
    disp_long = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = massfrac0
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro_fracture]
    type = PorousFlowPorosityConst
    porosity = 6e-4   # = a * phif
    block = 'fracture'
  [../]
  [./poro_matrix]
    type = PorousFlowPorosityConst
    porosity = 0.1
    block = 'matrix1 matrix2'
  [../]
  [./diff1]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1e-9 1e-9'
    tortuosity = 1.0
    block = 'fracture'
  [../]
  [./diff2]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1e-9 1e-9'
    tortuosity = 0.1
    block = 'matrix1 matrix2'
  [../]
  [./relp]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./permeability_fracture]
    type = PorousFlowPermeabilityConst
    permeability = '1.8e-11 0 0 0 1.8e-11 0 0 0 1.8e-11' # kf=3e-8, a=6e-4m.  1.8e-11 = kf * a
    block = 'fracture'
  [../]
  [./permeability_matrix]
    type = PorousFlowPermeabilityConst
    permeability = '1e-20 0 0 0 1e-20 0 0 0 1e-20'
    block = 'matrix1 matrix2'
  [../]
[]

[Functions]
  [./dt_controller]
     type = PiecewiseConstant
     x = '0    30   40 100 200 83200'
     y = '0.01 0.1  1  10  100 32'
  [../]
[]

[Preconditioning]
  active = basic
  [./mumps_is_best_for_parallel_jobs]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
  [./basic]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2             '
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 86400

  [./TimeStepper]
    type = FunctionDT
    function = dt_controller
  [../]

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-9
[]


[VectorPostprocessors]
  [./xmass]
    type = LineValueSampler
    start_point = '0.4 0 0'
    end_point = '0.5 0 0'
    sort_by = x
    num_points = 167
    variable = massfrac0
  [../]
[]

[Outputs]
  perf_graph = true
  console = true
  csv = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/cp_user_object/user_object.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
  nx = 2
  ny = 2
[]

[GlobalParams]
  volumetric_locking_correction = true
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
    use_displaced_mesh = true
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./rotout]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./gss]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[UserObjects]
  [./prop_read]
    type = ElementPropertyReadFile
    prop_file_name = 'euler_ang_file.txt'
    # Enter file data as prop#1, prop#2, .., prop#nprop
    nprop = 3
    read_type = element
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./e_yy]
    type = RankTwoAux
    variable = e_yy
    rank_two_tensor = lage
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./fp_yy]
    type = RankTwoAux
    variable = fp_yy
    rank_two_tensor = fp
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./gss]
    type = MaterialStdVectorAux
    variable = gss
    property = state_var_gss
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = tdisp
  [../]
[]

[UserObjects]
  [./slip_rate_gss]
    type = CrystalPlasticitySlipRateGSS
    variable_size = 12
    slip_sys_file_name = input_slip_sys.txt
    num_slip_sys_flowrate_props = 2
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    uo_state_var_name = state_var_gss
  [../]
  [./slip_resistance_gss]
    type = CrystalPlasticitySlipResistanceGSS
    variable_size = 12
    uo_state_var_name = state_var_gss
  [../]
  [./state_var_gss]
    type = CrystalPlasticityStateVariable
    variable_size = 12
    groups = '0 4 8 12'
    group_values = '60.8 60.8 60.8'
    uo_state_var_evol_rate_comp_name = state_var_evol_rate_comp_gss
    scale_factor = 1.0
  [../]
  [./state_var_evol_rate_comp_gss]
    type = CrystalPlasticityStateVarRateComponentGSS
    variable_size = 12
    hprops = '1.0 541.5 109.8 2.5'
    uo_slip_rate_name = slip_rate_gss
    uo_state_var_name = state_var_gss
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainUObasedCP
    stol = 1e-2
    tan_mod_type = exact
    uo_slip_rates = 'slip_rate_gss'
    uo_slip_resistances = 'slip_resistance_gss'
    uo_state_vars = 'state_var_gss'
    uo_state_var_evol_rate_comps = 'state_var_evol_rate_comp_gss'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'disp_x disp_y'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
    read_prop_user_object = prop_read
  [../]
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./e_yy]
    type = ElementAverageValue
    variable = e_yy
  [../]
  [./fp_yy]
    type = ElementAverageValue
    variable = fp_yy
  [../]
  [./gss]
    type = ElementAverageValue
    variable = gss
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.01
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.01
  num_steps = 10
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mean_cap/small_deform1.i

# apply uniform stretch in x, y and z directions.
# With a = 1 and strength = 2, the algorithm should return to sigma_m = 2

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
[]

[UserObjects]
  [./strength]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCap
    a = 1
    strength = strength
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mean_cap]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = cap
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform1
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/materials/stateful_coupling/stateful_coupling.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]

  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 'left'
    value = 1
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 2
  [../]
[]

[Materials]
  # This material couples in a stateful property from StatefulTest
  [./coupled_mat]
    type = CoupledMaterial
    mat_prop = 'some_prop'
    coupled_mat_prop = 'thermal_conductivity'
    use_old_prop = true
  [../]

  [./stateful_mat]
    type = StatefulTest
    prop_names = thermal_conductivity
    prop_values = 1.0
    output_properties = thermal_conductivity
    outputs = exodus
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  num_steps = 4
[]

[Outputs]
  exodus = true
[]

[Debug]
  show_material_props = true
[]

test/tests/nodalkernels/constraint_enforcement/upper-bound.i

l=10
nx=100
num_steps=10

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmax = ${l}
  nx = ${nx}
[]

[Variables]
  [u]
  []
  [lm]
  []
[]

[ICs]
  [u]
    type = FunctionIC
    variable = u
    function = '${l} - x'
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = Diffusion
    variable = u
  []
  [ffn]
    type = BodyForce
    variable = u
    function = '1'
  []
[]

[NodalKernels]
  [positive_constraint]
    type = UpperBoundNodalKernel
    variable = lm
    v = u
    exclude_boundaries = 'left right'
    upper_bound = 10
  []
  [forces]
    type = CoupledForceNodalKernel
    variable = u
    v = lm
    coef = -1
  []
[]


[BCs]
  [left]
    type = DirichletBC
    boundary = left
    value = ${l}
    variable = u
  []
  [right]
    type = DirichletBC
    boundary = right
    value = 0
    variable = u
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  num_steps = ${num_steps}
  solve_type = NEWTON
  dtmin = 1
  petsc_options_iname = '-snes_max_linear_solve_fail -ksp_max_it -pc_type -sub_pc_factor_levels -snes_linesearch_type'
  petsc_options_value = '0                           30          asm      16                    basic'
[]

[Outputs]
  exodus = true
  [csv]
    type = CSV
    execute_on = 'nonlinear timestep_end'
  []
  [dof]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Debug]
  show_var_residual_norms = true
[]

[Postprocessors]
  [active_lm]
    type = GreaterThanLessThanPostprocessor
    variable = lm
    execute_on = 'nonlinear timestep_end'
    value = 1e-8
  []
  [violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = ${fparse 10+1e-8}
    comparator = 'greater'
  []
[]

modules/porous_flow/test/tests/poro_elasticity/pp_generation_unconfined_basicthm.i

# Identical to pp_generation_unconfined_fullysat_volume.i but using an Action
#
# A sample is constrained on all sides, except its top
# and its boundaries are
# also impermeable.  Fluid is pumped into the sample via a
# volumetric source (ie m^3/second per cubic meter), and the
# rise in the top surface, porepressure, and stress are observed.
#
# In the standard poromechanics scenario, the Biot Modulus is held
# fixed and the source has units 1/s.  Then the expected result
# is
# strain_zz = disp_z = BiotCoefficient*BiotModulus*s*t/((bulk + 4*shear/3) + BiotCoefficient^2*BiotModulus)
# porepressure = BiotModulus*(s*t - BiotCoefficient*strain_zz)
# stress_xx = (bulk - 2*shear/3)*strain_zz   (remember this is effective stress)
# stress_zz = (bulk + 4*shear/3)*strain_zz   (remember this is effective stress)
#
# In standard porous_flow, everything is based on mass, eg the source has
# units kg/s/m^3.  This is discussed in the other pp_generation_unconfined
# models.  In this test, we use the FullySaturated Kernel and set
# multiply_by_density = false
# meaning the fluid Kernel has units of volume, and the source, s, has units 1/time
#
# The ratios are:
# stress_xx/strain_zz = (bulk - 2*shear/3) = 1 (for the parameters used here)
# stress_zz/strain_zz = (bulk + 4*shear/3) = 4 (for the parameters used here)
# porepressure/strain_zz = 13.3333333 (for the parameters used here)
#
# Expect
# disp_z = 0.3*10*s*t/((2 + 4*1.5/3) + 0.3^2*10) = 0.612245*s*t
# porepressure = 10*(s*t - 0.3*0.612245*s*t) = 8.163265*s*t
# stress_xx = (2 - 2*1.5/3)*0.612245*s*t = 0.612245*s*t
# stress_zz = (2 + 4*shear/3)*0.612245*s*t = 2.44898*s*t
#
# Finally, note that the volumetric strain has
# consistent_with_displaced_mesh = false
# which is needed when using the FullySaturated version of the Kernels
# in order to generate the above results

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back'
  [../]
[]


[Kernels]
  [./source]
    type = BodyForce
    function = 0.1
    variable = porepressure
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.0
      bulk_modulus = 3.3333333333
      viscosity = 1.0
      density0 = 1.0
    [../]
  [../]
[]

[PorousFlowBasicTHM]
  coupling_type = HydroMechanical
  displacements = 'disp_x disp_y disp_z'
  multiply_by_density = false
  porepressure = porepressure
  biot_coefficient = 0.3
  gravity = '0 0 0'
  fp = the_simple_fluid
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # the "const" is irrelevant here: all that uses Porosity is the BiotModulus, which just uses the initial value of porosity
    porosity = 0.1
    PorousFlowDictator = dictator
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    PorousFlowDictator = dictator
    biot_coefficient = 0.3
    fluid_bulk_modulus = 3.3333333333
    solid_bulk_compliance = 0.5
  [../]
  [./permeability_irrelevant]
    type = PorousFlowPermeabilityConst
    PorousFlowDictator = dictator
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./stress_xx_over_strain]
    type = FunctionValuePostprocessor
    function = stress_xx_over_strain_fcn
    outputs = csv
  [../]
  [./stress_zz_over_strain]
    type = FunctionValuePostprocessor
    function = stress_zz_over_strain_fcn
    outputs = csv
  [../]
  [./p_over_strain]
    type = FunctionValuePostprocessor
    function = p_over_strain_fcn
    outputs = csv
  [../]
[]

[Functions]
  [./stress_xx_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'stress_xx zdisp'
  [../]
  [./stress_zz_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'stress_zz zdisp'
  [../]
  [./p_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'p0 zdisp'
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = pp_generation_unconfined_basicthm
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/cavity_pressure/initial_temperature.i

#
# Cavity Pressure Test
#
# This test is designed to compute an internal pressure based on
#   p = n * R * T / V
# where
#   p is the pressure
#   n is the amount of material in the volume (moles)
#   R is the universal gas constant
#   T is the temperature
#   V is the volume
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total
#   initial volume is 7.
# The test adjusts n, T, and V in the following way:
#   n => n0 + alpha * t
#   T => T0 + beta * t
#   V => V0 + gamma * t
# with
#   alpha = n0
#   beta = T0 / 2
#   gamma = -(0.003322259...) * V0
#   T0 = 240.54443866068704
#   V0 = 7
#   n0 = f(p0)
#   p0 = 100
#   R = 8.314472 J * K^(-1) * mol^(-1)
#
# So, n0 = p0 * V0 / R / T0 = 100 * 7 / 8.314472 / 240.544439
#        = 0.35
#
# The parameters combined at t = 1 gives p = 301.
#
# This test sets the initial temperature to 500, but the CavityPressure
#   is told that that initial temperature is T0.  Thus, the final solution
#   is unchanged.

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = 3d.e
[]

[GlobalParams]
  volumetric_locking_correction = true
[]

[Functions]
  [./displ_positive]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.0029069767441859684'
  [../]
  [./displ_negative]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 -0.0029069767441859684'
  [../]
  [./temp1]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1.5'
    scale_factor = 240.54443866068704
  [../]
  [./material_input_function]
    type = PiecewiseLinear
    x = '0    1'
    y = '0 0.35'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 500
  [../]
  [./material_input]
  [../]
[]

[AuxVariables]
  [./pressure_residual_x]
  [../]
  [./pressure_residual_y]
  [../]
  [./pressure_residual_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
  [./heat]
    type = Diffusion
    variable = temp
    use_displaced_mesh = true
  [../]
  [./material_input_dummy]
    type = Diffusion
    variable = material_input
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_xx
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_yy
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_zz
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
    variable = stress_xy
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 2
    variable = stress_yz
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 0
    variable = stress_zx
  [../]
[]

[BCs]
  [./no_x_exterior]
    type = DirichletBC
    variable = disp_x
    boundary = '7 8'
    value = 0.0
  [../]
  [./no_y_exterior]
    type = DirichletBC
    variable = disp_y
    boundary = '9 10'
    value = 0.0
  [../]
  [./no_z_exterior]
    type = DirichletBC
    variable = disp_z
    boundary = '11 12'
    value = 0.0
  [../]
  [./prescribed_left]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 13
    function = displ_positive
  [../]
  [./prescribed_right]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 14
    function = displ_negative
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '15 16'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '17 18'
    value = 0.0
  [../]
  [./no_x_interior]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]
  [./no_y_interior]
    type = DirichletBC
    variable = disp_y
    boundary = '3 4'
    value = 0.0
  [../]
  [./no_z_interior]
    type = DirichletBC
    variable = disp_z
    boundary = '5 6'
    value = 0.0
  [../]
  [./temperatureInterior]
    type = FunctionDirichletBC
    boundary = 100
    function = temp1
    variable = temp
  [../]
  [./MaterialInput]
    type = FunctionDirichletBC
    boundary = '100 13 14 15 16'
    function = material_input_function
    variable = material_input
  [../]
  [./CavityPressure]
    [./1]
      boundary = 100
      initial_pressure = 100
      material_input = materialInput
      R = 8.314472
      temperature = aveTempInterior
      initial_temperature = 240.54443866068704
      volume = internalVolume
      startup_time = 0.5
      output = ppress
      save_in = 'pressure_residual_x pressure_residual_y pressure_residual_z'
    [../]
  [../]
[]

[Materials]
  [./elast_tensor1]
    type = ComputeElasticityTensor
    C_ijkl = '0 5'
    fill_method = symmetric_isotropic
    block = 1
  [../]
  [./strain1]
    type = ComputeFiniteStrain
    block = 1
  [../]
  [./stress1]
    type = ComputeFiniteStrainElasticStress
    block = 1
  [../]
  [./elast_tensor2]
    type = ComputeElasticityTensor
    C_ijkl = '0 5'
    fill_method = symmetric_isotropic
    block = 2
  [../]
  [./strain2]
    type = ComputeFiniteStrain
    block = 2
  [../]
  [./stress2]
    type = ComputeFiniteStrainElasticStress
    block = 2
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  nl_rel_tol = 1e-12
  l_tol = 1e-12

  l_max_its = 20

  dt = 0.5
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 100
    execute_on = 'initial linear'
  [../]
  [./aveTempInterior]
    type = SideAverageValue
    boundary = 100
    variable = temp
    execute_on = 'initial linear'
  [../]
  [./materialInput]
    type = SideAverageValue
    boundary = '7 8 9 10 11 12'
    variable = material_input
    execute_on = linear
  [../]
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/cracking/cracking.i

#
# Simple pull test for cracking.
# The stress increases for two steps and then drops to zero.
#
[Mesh]
  file = cracking_test.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

 []

[AuxVariables]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Functions]
  [./displ]
    type = PiecewiseLinear
    x = '0 1 2 3  4'
    y = '0 1 0 -1 0'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]
  [./strain_xx]
    type = MaterialTensorAux
    variable = strain_xx
    tensor = total_strain
    index = 0
  [../]

  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    tensor = stress
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    variable = stress_zz
    tensor = stress
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    variable = stress_xy
    tensor = stress
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    variable = stress_yz
    tensor = stress
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    variable = stress_zx
    tensor = stress
    index = 5
  [../]

[]


[BCs]
  [./pull]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = displ
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]
[]

[Materials]
  [./fred]
    type = Elastic
    block = 1
    youngs_modulus = 2.8e7
    poissons_ratio = 0 #.3
    cracking_stress = 1.68e6

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]

[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



  petsc_options_iname = '-ksp_gmres_restart -pc_type -sub_pc_type'
  petsc_options_value = '101                asm      lu'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-5
  start_time = 0.0
  end_time = 0.1
  dt = 0.025
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/beam/static/timoshenko_small_strain_z.i

# Test for small strain timoshenko beam bending in z direction

# A unit load is applied at the end of a cantilever beam of length 4m.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 2.60072400269
# Shear modulus (G) = 1.00027846257
# Poisson's ratio (nu) = 0.3
# Shear coefficient (k) = 0.85
# Cross-section area (A) = 0.554256
# Iy = 0.0141889 = Iz
# Length = 4 m

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 204.3734

# The small deformation analytical deflection of the beam is given by
# delta = PL^3/3EI * (1 + 3.0 / alpha) = 5.868e-2m

# Using 10 elements to discretize the beam element, the FEM solution is 5.852e-2 m.
# This deflection matches the FEM solution given in Prathap and Bhashyam (1982).

# References:
# Prathap and Bhashyam (1982), International journal for numerical methods in engineering, vol. 18, 195-210.
# Note that the force is scaled by 1e-4 compared to the reference problem.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_z2]
    type = ConstantRate
    variable = disp_z
    boundary = right
    rate = 1.0e-4
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 2.60072400269
    poissons_ratio = 0.3
    shear_coefficient = 0.85
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.554256
    Ay = 0.0
    Az = 0.0
    Iy = 0.0141889
    Iz = 0.0141889
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_z
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/3d_moving_penetration/pl_test2qtt.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test2qtt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.06
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test2qtt_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update21.i

# MC update version, with only MohrCoulomb, cohesion=10, friction angle = 60, psi = 5, smoothing_tol = 1
# Lame lambda = 0.5.  Lame mu = 1

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 0.5
    shear_modulus = 1.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '3 0 0  0 3 0  0 0 1.5'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/solid_mechanics/test/tests/volumetric_eigenstrain/volumetric_mechanical.i

# This test ensures that the reported volumetric strain for a cube with
# mechanically imposed displacements (through Dirichlet BCs) exactly
# matches that from a version of this test that experiences the same
# defomation, but due to imposed eigenstrains.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./volumetric_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]
  [./volumetric_strain]
    type = MaterialTensorAux
    tensor = total_strain
    variable = volumetric_strain
    quantity = VolumetricStrain
  [../]
[]

[Functions]
  [pres_disp]
    type = PiecewiseLinear
    # These values are taken from the displacements in the eigenstrain
    # version of this test. The volume of the cube (which starts out as
    # a 1x1x1 cube) is (1 + disp)^3. At time 2, this is
    # (1.44224957030741)^3, which is 3.0.
    xy_data = '0 0
               1 0.25992104989487
               2 0.44224957030741'
  []
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = right
    function = pres_disp
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pres_disp
  [../]
  [./front]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = pres_disp
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    increment_calculation = Eigen
    block = 0
  [../]
[]

[Postprocessors]
  [./vol]
    type = VolumePostprocessor
    use_displaced_mesh = true
    execute_on = 'initial timestep_end'
  [../]
  [./volumetric_strain]
    type = ElementalVariableValue
    variable = volumetric_strain
    elementid = 0
  [../]
  [./disp_right]
    type = NodalMaxValue
    variable = disp_x
    boundary = right
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 2.0
  dt = 1.0
[]

[Outputs]
  exodus = true
  csv = true
[]

test/tests/functions/solution_function/solution_function_rot1.i

# checking rotation of points by 45 deg about z axis in a SolutionUserObject
[Mesh]
  # this is chosen so when i rotate through 45deg i get a length of "1" along the x or y or z direction
  type = GeneratedMesh
  dim = 3
  xmin = -0.70710678
  xmax = 0.70710678
  nx = 3
  ymin = -0.70710678
  ymax = 0.70710678
  ny = 3
  zmin = -0.70710678
  zmax = 0.70710678
  nz = 3
[]

[UserObjects]
  [./solution_uo]
    type = SolutionUserObject
    mesh = cube_with_u_equals_x.e
    timestep = LATEST
    system_variables = u
    rotation0_vector = '0 0 1'
    rotation0_angle = 45
    transformation_order = rotation0
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = solution_fcn
  [../]
[]

[Functions]
  [./solution_fcn]
    type = SolutionFunction
    from_variable = u
    solution = solution_uo
  [../]
[]

[Kernels]
  [./diff]
    type = TimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 1
  end_time = 1
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = solution_function_rot1
  exodus = true
[]

modules/combined/test/tests/sliding_block/sliding/constraint/frictional_02_penalty.i

#  This is a benchmark test that checks constraint based frictional
#  contact using the penalty method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  A friction coefficient of 0.2 is used.  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    friction_coefficient = 0.2
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/porous_flow/test/tests/chemistry/2species_equilibrium_2phase.i

# Using a two-phase system (see 2species_equilibrium for the single-phase)
# The saturations, porosity, mass fractions, tortuosity and diffusion coefficients are chosen so that the results are identical to 2species_equilibrium
#
# PorousFlow analogy of chemical_reactions/test/tests/aqueous_equilibrium/2species.i
#
# Simple equilibrium reaction example to illustrate the use of PorousFlowMassFractionAqueousEquilibriumChemistry
#
# In this example, two primary species a and b are transported by diffusion and convection
# from the left of the porous medium, reacting to form two equilibrium species pa2 and pab
# according to the equilibrium reaction:
#
#      reactions = '2a = pa2     rate = 10^2
#                   a + b = pab  rate = 10^-2'
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1E2
  [../]
  [./eqm_k1]
    initial_condition = 1E-2
  [../]
  [./pressure0]
  [../]
  [./saturation1]
    initial_condition = 0.25
  [../]
  [./a_in_phase0]
    initial_condition = 0.0
  [../]
  [./b_in_phase0]
    initial_condition = 0.0
  [../]
  [./pa2]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./pab]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./pa2]
    type = PorousFlowPropertyAux
    property = secondary_concentration
    secondary_species = 0
    variable = pa2
  [../]
  [./pab]
    type = PorousFlowPropertyAux
    property = secondary_concentration
    secondary_species = 1
    variable = pab
  [../]
[]

[ICs]
  [./pressure0]
    type = FunctionIC
    variable = pressure0
    function = 2-x
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Kernels]
  [./mass_a]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = a
  [../]
  [./flux_a]
    type = PorousFlowAdvectiveFlux
    variable = a
    fluid_component = 0
  [../]
  [./diff_a]
    type = PorousFlowDispersiveFlux
    variable = a
    fluid_component = 0
    disp_trans = '0 0'
    disp_long = '0 0'
  [../]
  [./mass_b]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = b
  [../]
  [./flux_b]
    type = PorousFlowAdvectiveFlux
    variable = b
    fluid_component = 1
  [../]
  [./diff_b]
    type = PorousFlowDispersiveFlux
    variable = b
    fluid_component = 1
    disp_trans = '0 0'
    disp_long = '0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 2
    number_fluid_components = 3
    number_aqueous_equilibrium = 2
    aqueous_phase_number = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9 # huge, so mimic chemical_reactions
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    capillary_pressure = pc
    phase0_porepressure = pressure0
    phase1_saturation = saturation1
  [../]
  [./massfrac]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'a_in_phase0 b_in_phase0 a b'
    num_reactions = 2
    equilibrium_constants = 'eqm_k0 eqm_k1'
    primary_activity_coefficients = '1 1'
    secondary_activity_coefficients = '1 1'
    reactions = '2 0
                 1 1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.8
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    # porous_flow permeability / porous_flow viscosity = chemical_reactions conductivity = 1E-4
    permeability = '1E-7 0 0 0 1E-7 0 0 0 1E-7'
  [../]
  [./relp0]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./relp1]
    type = PorousFlowRelativePermeabilityConst
    phase = 1
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    # porous_flow diffusion_coeff * tortuousity * porosity = chemical_reactions diffusivity = 1E-4
    diffusion_coeff = '5E-4 5E-4 5E-4
                       5E-4 5E-4 5E-4'
    tortuosity = '0.25 0.25'
  [../]
[]

[BCs]
  [./a_left]
    type = DirichletBC
    variable = a
    boundary = left
    value = 1.0e-2
  [../]
  [./b_left]
    type = DirichletBC
    variable = b
    boundary = left
    value = 1.0e-2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 10
  end_time = 100
[]

[Outputs]
  print_linear_residuals = true
  exodus = true
  perf_graph = true
[]

modules/combined/test/tests/gravity/gravity_rz_sm.i

# This test uses small strain formulation, and the use_displaced_mesh
# is set to false for the kernels
#
# Gravity Test
#
# This test is designed to exercise the gravity body force rz kernel.
#
# The mesh for this problem is a rectangle 10 units by 1 unit.
#
# The boundary conditions for this problem are as follows.  The
#   displacement is zero at the top.  The acceleration of gravity is 20.
#
# The material has a Young's modulus of 1e6 and a density of 2.
#
# The analytic solution for the displacement along the bar is:
#
# u(y) = -b*y^2/(2*E)+b*L*y/E
#
# The displacement at y=L is b*L^2/(2*E) = 2*20*10*10/(2*1e6) = 0.002.
#
# The analytic solution for the stress along the bar assuming linear
#   elasticity is:
#
# S(y) = b*(L-y)
#
# The stress at x=0 is b*L = 2*20*10 = 400.
#
# Note:  The simulation does not measure stress at y=0.  The stress
#   is reported at element centers.  The element closest to y=0 sits
#   at y = 1/4 and has a stress of 390.  This matches the linear
#   stress distribution that is expected.  The same situation applies
#   at y = L where the stress is zero analytically.  The nearest
#   element is at y=9.75 where the stress is 10.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = gravity_rz_test.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Kernels]
  [./gravity]
    type = Gravity
    variable = disp_y
    value = 20
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
[]

[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    shear_modulus = 0.5e6
    lambda = 0.0

    formulation = NonlinearRZ
  [../]

  [./density]
    type = Density
    block = 1
    density = 2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  file_base = gravity_rz_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/transfers/multiapp_projection_transfer/fromsub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  ymin = 0
  xmax = 3
  ymax = 3
  nx = 3
  ny = 3
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./x]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./x_func]
    type = ParsedFunction
    value = x
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = v
  [../]
[]

[AuxKernels]
  [./x_func_aux]
    type = FunctionAux
    variable = x
    function = x_func
    execute_on = initial
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = v
    boundary = left
    value = 2
  [../]
  [./right]
    type = DirichletBC
    variable = v
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  solve_type = 'NEWTON'
[]

[Outputs]
  exodus = true
[]

modules/contact/test/tests/bouncing-block-contact/frictional-mortar-fb-lm-mortar-disp.i

starting_point = 2e-1

# We offset slightly so we avoid the case where the bottom of the slave block and the top of the
# master block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
  scaling = 1e0
[]

[Mesh]
  file = long-bottom-block-1elem-blocks.e
[]

[Variables]
  [./disp_x]
    block = '1 2'
    # order = SECOND
  [../]
  [./disp_y]
    block = '1 2'
    # order = SECOND
  [../]
  [./normal_lm]
    block = 3
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./tangential_lm]
    block = 3
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [normal_lm]
    type = NormalMortarLMMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    slave_disp_y = disp_y
    use_displaced_mesh = true
    compute_primal_residuals = false
    ncp_function_type = fb
  []
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [tangential_lm]
    type = TangentialMortarLMMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = tangential_lm
    slave_variable = disp_x
    slave_disp_y = disp_y
    use_displaced_mesh = true
    compute_primal_residuals = false
    contact_pressure = normal_lm
    friction_coefficient = .1
    ncp_function_type = fb
  []
  [tangential_x]
    type = TangentialMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = tangential_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [tangential_y]
    type = TangentialMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = tangential_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'

  # [./Predictor]
  #   type = SimplePredictor
  #   scale = 1.0
  # [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
  # checkpoint = true
  # [./dofmap]
  #   type = DOFMap
  #   execute_on = 'initial'
  # [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '3'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/porous_flow/test/tests/jacobian/chem06.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Dissolution with no temperature dependence, with one primary variable = 0 and stoichiometry = 1
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.2
  [../]
  [./b]
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1.234
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
  [./ini_sec_conc]
    initial_condition = 0.222
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1E5
    stoichiometry = 2
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 2.2E5
    stoichiometry = 3
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '0.5 0.8'
    reactions = '3 1'
    specific_reactive_surface_area = -44.4E-2
    kinetic_rate_constant = 0.678
    activation_energy = 4.4
    molar_volume = 3.3
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = 1
    eta_exponent = 1.2
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_sec_conc
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

modules/combined/test/tests/ad_power_law_creep/power_law_creep_restart1.i

# 1x1x1 unit cube with uniform pressure on top face

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy creep_strain_xx creep_strain_yy creep_strain_zz elastic_strain_yy'
    use_automatic_differentiation = true
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1'
  [../]
[]

[Kernels]
  [./heat]
    type = ADHeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = ADHeatConductionTimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./u_top_pull]
    type = ADPressure
    variable = disp_y
    component = 1
    boundary = top
    constant = -10.0e6
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = ADDirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'bottom top'
    value = 1000.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e11
    poissons_ratio = 0.3
  [../]
  [./radial_return_stress]
    type = ADComputeMultipleInelasticStress
    inelastic_models = 'power_law_creep'
  [../]
  [./power_law_creep]
    type = ADPowerLawCreepStressUpdate
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    temperature = temp
  [../]

  [./thermal]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]
  [./density]
    type = ADDensity
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.0
  num_steps = 6
  dt = 0.1
[]

[Outputs]
  exodus = true
  csv = true
  [./out]
    type = Checkpoint
    num_files = 1
  [../]
[]

modules/phase_field/test/tests/new_initial_conditions/prepare_mesh.i

#
# Prepare and relax interfaces of a polycrystalline sample for the
# PolycrystalVariables_initial_from_file test
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  xmax = 400
  ymax = 400
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 4
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 102
    grain_num = 4
    coloring_algorithm = bt
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Moly_GB]
    type = GBEvolution
    time_scale = 1.0
    GBmob0 = 3.986e-6
    T = 500 # K
    wGB = 60 # nm
    Q = 1.0307
    GBenergy = 2.4
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  end_time = 3.0
  dt = 1.5
[]

[Outputs]
  exodus = true
[]

test/tests/controls/time_periods/bcs/bcs_enable_disable.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./right2]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = (y*(t-1))+1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Controls]
  [./period0]
    type = TimePeriod
    enable_objects = 'BCs::right'
    disable_objects = 'BCs::right2'
    start_time = '0'
    end_time = '0.5'
    execute_on = 'initial timestep_begin'
  [../]
[]

modules/porous_flow/test/tests/dirackernels/bh_except09.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
    compute_enthalpy = false
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = bh02.bh
    use_mobility = true
    use_enthalpy = true
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/phase_field/test/tests/initial_conditions/RndSmoothCircleIC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c]
    variable = c
    type = RndSmoothCircleIC
    x1 = 25.0
    y1 = 25.0
    radius = 6.0
    invalue = 1.0
    variation_invalue = 0.0
    outvalue = -0.8
    variation_outvalue = 0.2
    int_width = 5
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 10
  l_tol = 1.0e-4
  nl_max_its = 10

  start_time = 0.0
  num_steps = 1
  dt = 20.0
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/console/multiapp/picard_master_both.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v_begin]
  [../]
  [./v_end]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u_begin]
    type = CoupledForce
    variable = u
    v = v_begin
  [../]
  [./force_u_end]
    type = CoupledForce
    variable = u
    v = v_end
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_abs_tol = 1e-14
[]

[MultiApps]
  [./sub_begin]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = picard_sub.i
  [../]
  [./sub_end]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '1 1 1'
    input_files = picard_sub.i
    execute_on = 'timestep_end'
  [../]
[]

[Transfers]
  [./v_from_sub_begin]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub_begin
    source_variable = v
    variable = v_begin
  [../]
  [./u_to_sub_begin]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub_begin
    source_variable = u
    variable = u
  [../]
  [./v_from_sub_end]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub_end
    source_variable = v
    variable = v_end
  [../]
  [./u_to_sub_end]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub_end
    source_variable = u
    variable = u
  [../]
[]

modules/tensor_mechanics/test/tests/multi/special_rock1.i

# Plasticity models:
# Mohr-Coulomb with cohesion = 40MPa, friction angle = 35deg, dilation angle = 5deg
# Tensile with strength = 1MPa
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked
#
# NOTE: The yield function tolerances here are set at 100-times what i would usually use
# This is because otherwise the test fails on the 'pearcey' architecture.
# This is because identical stress tensors yield slightly different eigenvalues
# (and hence return-map residuals) on 'pearcey' than elsewhere, which results in
# a different number of NR iterations are needed to return to the yield surface.
# This is presumably because of compiler internals, or the BLAS routines being
# optimised differently or something similar.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[GlobalParams]
  volumetric_locking_correction=true
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./linesearch]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ld]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./constr_added]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./linesearch]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = linesearch
  [../]
  [./ld]
    type = MaterialRealAux
    property = plastic_linear_dependence_encountered
    variable = ld
  [../]
  [./constr_added]
    type = MaterialRealAux
    property = plastic_constraints_added
    variable = constr_added
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./max_iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./av_linesearch]
    type = ElementAverageValue
    variable = linesearch
    outputs = 'console csv'
  [../]
  [./av_ld]
    type = ElementAverageValue
    variable = ld
    outputs = 'console csv'
  [../]
  [./av_constr_added]
    type = ElementAverageValue
    variable = constr_added
    outputs = 'console csv'
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console csv'
  [../]
[]


[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 4E7
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    use_custom_returnMap = false
    yield_function_tolerance = 1.0E+2  # Note larger value
    shift = 1.0E+2                     # Note larger value
    internal_constraint_tolerance = 1.0E-7
  [../]
  [./mc_smooth]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4E6
    yield_function_tolerance = 1.0
    internal_constraint_tolerance = 1.0E-7
  [../]

  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./tensile]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = ts
    yield_function_tolerance = 1.0E+2  # Note larger value
    shift = 1.0E+2                     # Note larger value
    internal_constraint_tolerance = 1.0E-7
    use_custom_returnMap = false
    use_custom_cto = false
  [../]
  [./tensile_smooth]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    tensile_tip_smoother = 1E5
    yield_function_tolerance = 1.0
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1.0E9 1.3E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5  # Note larger value, to match the larger yield_function_tolerances

    plastic_models = 'tensile mc'
    max_NR_iterations = 5
    specialIC = 'rock'
    deactivation_scheme = 'safe'
    min_stepsize = 1
    max_stepsize_for_dumb = 1

    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1 1'
    debug_jac_at_intnl = '1 1 1 1'
    debug_stress_change = 1E1
    debug_pm_change = '1E-6 1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = special_rock1
  exodus = false
  csv = true
[]

modules/combined/test/tests/thermo_mech/thermo_mech_smp.i

[GlobalParams]
  temperature = temp
  volumetric_locking_correction = true
[]

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]

  [./temp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./bottom_temp]
    type = DirichletBC
    variable = temp
    boundary = 1
    value = 10.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1.0
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = eigenstrain
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 0.0
    thermal_expansion_coeff = 1e-5
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./heat]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-14
  l_tol = 1e-3

  l_max_its = 100

  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = thermo_mech_smp_out
  [./exodus]
    type = Exodus
    execute_on = 'initial timestep_end nonlinear'
    nonlinear_residual_dt_divisor = 100
  [../]
[]

modules/navier_stokes/test/tests/ins/stagnation/stagnation.i

[GlobalParams]
  gravity = '0 0 0'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 2.0
  ymin = 0
  ymax = 2.0
  nx = 20
  ny = 20
  elem_type = QUAD9
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    solve_type = Newton
  [../]
[]

[Executioner]
  type = Transient
  dt = 1.0
  dtmin = 1.e-6
  num_steps = 5
  l_max_its = 100
  nl_max_its = 10
  nl_rel_tol = 1.e-9

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -sub_pc_factor_levels'
  petsc_options_value = 'asm      2               ilu          4'
[]

[Variables]
  [./vel_x]
    family = LAGRANGE
    order = SECOND
  [../]
  [./vel_y]
    family = LAGRANGE
    order = SECOND
  [../]
  [./p]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[BCs]
  [./u_in]
    type = FunctionDirichletBC
    boundary = 'top'
    variable = vel_x
    function = vel_x_inlet
  [../]
  [./v_in]
    type = FunctionDirichletBC
    boundary = 'top'
    variable = vel_y
    function = vel_y_inlet
  [../]
  [./vel_x_no_slip]
    type = DirichletBC
    boundary = 'left bottom'
    variable = vel_x
    value = 0
  [../]
  [./vel_y_no_slip]
    type = DirichletBC
    boundary = 'bottom'
    variable = vel_y
    value = 0
  [../]
  # Note: setting INSMomentumNoBCBC on the outlet boundary causes the
  # matrix to be singular.  The natural BC, on the other hand, is
  # sufficient to specify the value of the pressure without requiring
  # a pressure pin.
[]

[Functions]
  [./vel_x_inlet]
    type = ParsedFunction
    value = 'k*x'
    vars = 'k'
    vals = '1'
  [../]
  [./vel_y_inlet]
    type = ParsedFunction
    value = '-k*y'
    vars = 'k'
    vals = '1'
  [../]
[]


[Kernels]
  [./x_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_x
  [../]
  [./y_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_y
  [../]
  [./mass]
    type = INSMass
    variable = p
    u = vel_x
    v = vel_y
    p = p
  [../]
  [./x_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_x
    u = vel_x
    v = vel_y
    p = p
    component = 0
  [../]
  [./y_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_y
    u = vel_x
    v = vel_y
    p = p
    component = 1
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'rho mu'
    prop_values = '1 .01389' # 2/144
  [../]
[]

[Outputs]
  exodus = true
  [./out]
    type = CSV
    execute_on = 'final'
  [../]
[]

[VectorPostprocessors]
  [./nodal_sample]
    # Pick off the wall pressure values.
    type = NodalValueSampler
    variable = p
    boundary = 'bottom'
    sort_by = x
  [../]
[]

modules/phase_field/test/tests/phase_field_kernels/CoupledCoefAllenCahn.i

#
# Test the CoefReaction kernel (which adds -L*v to the residual) for the case
# where v is a coupled variable
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  nz = 0
  xmin = 0
  xmax = 50
  ymin = 0
  ymax = 50
  zmin = 0
  zmax = 50
  elem_type = QUAD4
[]

[Variables]
  [./w]
  [../]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 25.0
      y1 = 25.0
      radius = 6.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 3.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
  [./ACBulk]
    type = CoupledAllenCahn
    variable = w
    v = eta
    f_name = F
    mob_name = 1
  [../]
  [./W]
    type = MatReaction
    variable = w
    mob_name = -1
  [../]
  [./CoupledBulk]
    type = MatReaction
    variable = eta
    v = w
    mob_name = L
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = 1
    mob_name = L
    args = w
  [../]
[]

[Materials]
  [./mobility]
    type = DerivativeParsedMaterial
    f_name  = L
    args = 'eta w'
    function = '(1.5-eta)^2+(1.5-w)^2'
    derivative_order = 2
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta'
    function = 'eta^2 * (1-eta)^2'
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'PJFNK'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 2
  dt = 0.5
[]

[Outputs]
  hide = w
  exodus = true
[]

modules/tensor_mechanics/test/tests/weak_plane_tensile/small_deform1N.i

# checking for small deformation
# A single element is stretched by 1E-6m in x,y and z directions.
# stress_zz = Youngs Modulus*Strain = 2E6*1E-6 = 2 Pa
# wpt_tensile_strength is set to 1Pa
# Then the final stress should return to the yeild surface and its value should be 1pa.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = disp_x
    boundary = front
    value = 0E-6
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = front
    value = 0E-6
  [../]
  [./topz]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 1E-6
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensileN
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
    normal_vector = '0 0 1'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wpt
    ep_plastic_tolerance = 1E-5
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform1N
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/creep_tangent_operator/creep.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  second_order = true
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0 10'
    y = '0 1e-3'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    use_displaced_mesh = true
    use_finite_deform_jacobian = true
    generate_output = 'hydrostatic_stress'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.3
  [../]

  [./elastic_strain]
    type = ComputeMultipleInelasticStress
    # inelastic_models = ''
    tangent_operator = nonlinear
  [../]

  [./creep_ten]
    type = PowerLawCreepStressUpdate
    coefficient = 10e-24
    n_exponent = 4
    activation_energy = 0
    base_name = creep_ten
  [../]
  [./creep_ten2]
    type = PowerLawCreepStressUpdate
    coefficient = 10e-24
    n_exponent = 4
    activation_energy = 0
    base_name = creep_ten2
  [../]
  [./creep_one]
    type = PowerLawCreepStressUpdate
    coefficient = 1e-24
    n_exponent = 4
    activation_energy = 0
    base_name = creep_one
  [../]
  [./creep_nine]
    type = PowerLawCreepStressUpdate
    coefficient = 9e-24
    n_exponent = 4
    activation_energy = 0
    base_name = creep_nine
  [../]
  [./creep_zero]
    type = PowerLawCreepStressUpdate
    coefficient = 0e-24
    n_exponent = 4
    activation_energy = 0
    base_name = creep_zero
  [../]
[]

[BCs]
  [./no_disp_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]

  [./no_disp_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./pull_disp_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pull
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
  line_search = 'none'
  nl_rel_tol = 1e-5

  num_steps = 5
  dt = 1e-1
[]

[Postprocessors]
  [./max_disp_x]
    type = ElementExtremeValue
    variable = disp_x
  [../]
  [./max_disp_y]
    type = ElementExtremeValue
    variable = disp_y
  [../]
  [./max_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
  [../]
  [./dt]
    type = TimestepSize
  [../]
  [./num_lin]
    type = NumLinearIterations
    outputs = console
  [../]
  [./num_nonlin]
    type = NumNonlinearIterations
    outputs = console
  [../]
[]

[Outputs]
  csv = true
  perf_graph = true
[]

[Debug]
  show_var_residual_norms = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/planar1.i

# apply uniform stretch in x, y and z directions.
# With cohesion = 10, friction_angle = 60deg, the
# algorithm should return to
# sigma_m = 10*Cos(60)/Sin(60) = 5.773503
# using planar surfaces (not smoothed)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1.1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.2E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 1.04719756
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 0.1
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    yield_function_tolerance = 1E-3
    shift = 1E-12
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-10
    deactivation_scheme = safe
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar1
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test3qns.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3q.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.025
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test3qns_out
  exodus = true
[]

modules/phase_field/test/tests/flood_counter_periodic_test/nodal_flood_periodic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  nz = 0

  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff forcing_1 forcing_2 forcing_3 forcing_4 dot'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing_1]
    type = GaussContForcing
    variable = u
    x_center = 1.0
    y_center = 1.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_2]
    type = GaussContForcing
    variable = u
    x_center = 20.0
    y_center = 39.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_3]
    type = GaussContForcing
    variable = u
    x_center = 39.0
    y_center = 20.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_4]
    type = GaussContForcing
    variable = u
    x_center = 15.0
    y_center = 15.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./x]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[Postprocessors]
  active = 'bubbles'

  [./bubbles]
    type = FeatureFloodCount
    variable = u
    threshold = 0.3
    execute_on = timestep_end
    flood_entity_type = NODAL
  [../]
[]

[Executioner]
  type = Transient
  dt = 4.0
  num_steps = 5

  [./Adaptivity]
    refine_fraction = .40
    coarsen_fraction = .02
    max_h_level = 3
    error_estimator = KellyErrorEstimator
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out
  exodus = true
[]

test/tests/outputs/iterative/iterative_start_time.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = Exodus
    nonlinear_residual_dt_divisor = 100
    linear_residual_dt_divisor = 100
    nonlinear_residual_start_time = 1.8
    linear_residual_start_time = 1.8
  [../]
[]

test/tests/multiapps/catch_up/failing_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Problem]
  type = FailingProblem
  fail_step = 2
[../]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1 # This will be constrained by the master solve

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/misc/exception/parallel_exception_residual_transient.i

[Mesh]
  file = 2squares.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./exception]
    type = ExceptionKernel
    variable = u
    when = residual
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./time_deriv]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
  [./right2]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  dtmin = 0.005
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/dispersion/diff01.i

# Test diffusive part of PorousFlowDispersiveFlux kernel by setting dispersion
# coefficients to zero. Pressure is held constant over the mesh, and gravity is
# set to zero so that no advective transport of mass takes place.
# Mass fraction is set to 1 on the left hand side and 0 on the right hand side.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmax = 10
  bias_x = 1.1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
[]

[AuxVariables]
  [./velocity]
    family = MONOMIAL
    order = FIRST
  [../]
[]

[AuxKernels]
  [./velocity]
    type = PorousFlowDarcyVelocityComponent
    variable = velocity
    component = x
  [../]
[]

[ICs]
  [./pp]
    type = ConstantIC
    variable = pp
    value = 1e5
  [../]
  [./massfrac0]
    type = ConstantIC
    variable = massfrac0
    value = 0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    value = 1
    variable = massfrac0
    boundary = left
  [../]
  [./right]
    type = DirichletBC
    value = 0
    variable = massfrac0
    boundary = right
  [../]
  [./pright]
    type = DirichletBC
    variable = pp
    boundary = right
    value = 1e5
  [../]
  [./pleft]
    type = DirichletBC
    variable = pp
    boundary = left
    value = 1e5
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
  [../]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = pp
    disp_trans = 0
    disp_long = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = massfrac0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = massfrac0
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    disp_trans = 0
    disp_long = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1e7
      density0 = 1000
      viscosity = 0.001
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = massfrac0
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro]
    type = PorousFlowPorosityConst
    porosity = 0.3
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1 1'
    tortuosity = 0.1
  [../]
  [./relp]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-9 0 0 0 1e-9 0 0 0 1e-9'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2             '
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 20
[]

[VectorPostprocessors]
  [./xmass]
    type = NodalValueSampler
    sort_by = id
    variable = massfrac0
  [../]
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/stochastic_tools/test/tests/vectorpostprocessors/stochastic_results_complete_history/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Postprocessors]
  [avg]
    type = AverageNodalVariableValue
    variable = u
  []
[]

[Outputs]
[]

test/tests/parser/cli_multiapp_single/dt_from_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

[MultiApps]
  [./sub_app]
    positions = '0 0 0  0.5 0.5 0  0.6 0.6 0  0.7 0.7 0'
    type = TransientMultiApp
    input_files = 'dt_from_master_sub.i'
    app_type = MooseTestApp
  [../]
[]

test/tests/geomsearch/2d_moving_penetration/pl_test3qnns.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_method = nodal_normal_based
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-10
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test3qnns_out
  exodus = true
[]

[NodalNormals]
  boundary = 11
  corner_boundary = 20
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform4.i

# apply repeated stretches in z direction, and smaller stretches in the x and y directions
# so that sigma_II = sigma_III,
# which means that lode angle = -30deg.
# The allows yield surface in meridional plane to be mapped out

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.25E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.25E-6*y*sin(t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 50
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0
    value_residual = 0.8726646 # 50deg
    rate = 3000.0
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4
    mc_edge_smoother = 20
    yield_function_tolerance = 1E-8
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 30
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform4
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/jacobian/tensile_update2.i

# Tensile, update version, with strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Return to the stress_I = stress_II ~1 edge

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 0 0  0 0 0  0 0 2.01'
    eigenstrain_name = ini_stress
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/functions/piecewise_multilinear/twoDa.i

# PiecewiseMultilinear function tests in 2D
# See [Functions] block for a description of the tests
# The functions are compared with ParsedFunctions using postprocessors

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  nx = 6
  ymin = 0
  ymax = 1
  ny = 6
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./bilinear1_var]
  [../]
[]

[AuxKernels]
  [./bilinear1_AuxK]
    type = FunctionAux
    variable = bilinear1_var
    function = bilinear1_fcn
  [../]
[]


[Functions]
# This is just f = 1 + 2x + 3y
  [./bilinear1_fcn]
    type = PiecewiseMultilinear
    data_file = twoD1.txt
  [../]
  [./bilinear1_answer]
    type = ParsedFunction
    value = 1+2*x+3*y
  [../]
[]

[Postprocessors]
  [./bilinear1_pp]
    type = NodalL2Error
    function = bilinear1_answer
    variable = bilinear1_var
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = twoDa
  hide = dummy
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_1/ring1_template1.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring1_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/phase_field/examples/multiphase/GrandPotential3Phase.i

# This is an example of implementation of the multi-phase, multi-order parameter
# grand potential based phase-field model described in Phys. Rev. E, 98, 023309
# (2019). It includes 3 phases with 1 grain of each phase. This example was used
# to generate the results shown in Fig. 3 of the paper.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 60
  xmin = -15
  xmax = 15
[]

[Variables]
  [./w]
  [../]
  [./etaa0]
  [../]
  [./etab0]
  [../]
  [./etad0]
  [../]
[]

[ICs]
  [./IC_etaa0]
    type = FunctionIC
    variable = etaa0
    function = ic_func_etaa0
  [../]
  [./IC_etab0]
    type = FunctionIC
    variable = etab0
    function = ic_func_etab0
  [../]
  [./IC_etad0]
    type = ConstantIC
    variable = etad0
    value = 0.1
  [../]
  [./IC_w]
    type = FunctionIC
    variable = w
    function = ic_func_w
  [../]
[]

[Functions]
  [./ic_func_etaa0]
    type = ParsedFunction
    value = '0.9*0.5*(1.0-tanh((x)/sqrt(2.0)))'
  [../]
  [./ic_func_etab0]
    type = ParsedFunction
    value = '0.9*0.5*(1.0+tanh((x)/sqrt(2.0)))'
  [../]
  [./ic_func_w]
    type = ParsedFunction
    value = 0
  [../]
[]

[Kernels]
# Order parameter eta_alpha0
  [./ACa0_bulk]
    type = ACGrGrMulti
    variable = etaa0
    v =           'etab0 etad0'
    gamma_names = 'gab   gad'
  [../]
  [./ACa0_sw]
    type = ACSwitching
    variable = etaa0
    Fj_names  = 'omegaa omegab omegad'
    hj_names  = 'ha     hb     hd'
    args = 'etab0 etad0 w'
  [../]
  [./ACa0_int]
    type = ACInterface
    variable = etaa0
    kappa_name = kappa
  [../]
  [./ea0_dot]
    type = TimeDerivative
    variable = etaa0
  [../]
# Order parameter eta_beta0
  [./ACb0_bulk]
    type = ACGrGrMulti
    variable = etab0
    v =           'etaa0 etad0'
    gamma_names = 'gab   gbd'
  [../]
  [./ACb0_sw]
    type = ACSwitching
    variable = etab0
    Fj_names  = 'omegaa omegab omegad'
    hj_names  = 'ha     hb     hd'
    args = 'etaa0 etad0 w'
  [../]
  [./ACb0_int]
    type = ACInterface
    variable = etab0
    kappa_name = kappa
  [../]
  [./eb0_dot]
    type = TimeDerivative
    variable = etab0
  [../]
# Order parameter eta_delta0
  [./ACd0_bulk]
    type = ACGrGrMulti
    variable = etad0
    v =           'etaa0 etab0'
    gamma_names = 'gad   gbd'
  [../]
  [./ACd0_sw]
    type = ACSwitching
    variable = etad0
    Fj_names  = 'omegaa omegab omegad'
    hj_names  = 'ha     hb     hd'
    args = 'etaa0 etab0 w'
  [../]
  [./ACd0_int]
    type = ACInterface
    variable = etad0
    kappa_name = kappa
  [../]
  [./ed0_dot]
    type = TimeDerivative
    variable = etad0
  [../]
#Chemical potential
  [./w_dot]
    type = SusceptibilityTimeDerivative
    variable = w
    f_name = chi
    args = 'etaa0 etab0 etad0'
  [../]
  [./Diffusion]
    type = MatDiffusion
    variable = w
    diffusivity = Dchi
    args = ''
  [../]
  [./coupled_etaa0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etaa0
    Fj_names = 'rhoa rhob rhod'
    hj_names = 'ha   hb   hd'
    args = 'etaa0 etab0 etad0'
  [../]
  [./coupled_etab0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etab0
    Fj_names = 'rhoa rhob rhod'
    hj_names = 'ha   hb   hd'
    args = 'etaa0 etab0 etad0'
  [../]
  [./coupled_etad0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etad0
    Fj_names = 'rhoa rhob rhod'
    hj_names = 'ha   hb   hd'
    args = 'etaa0 etab0 etad0'
  [../]
[]

[Materials]
  [./ha_test]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = ha
    all_etas = 'etaa0 etab0 etad0'
    phase_etas = 'etaa0'
  [../]
  [./hb_test]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = hb
    all_etas = 'etaa0 etab0 etad0'
    phase_etas = 'etab0'
  [../]
  [./hd_test]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = hd
    all_etas = 'etaa0 etab0 etad0'
    phase_etas = 'etad0'
  [../]
  [./omegaa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegaa
    material_property_names = 'Vm ka caeq'
    function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
    derivative_order = 2
  [../]
  [./omegab]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegab
    material_property_names = 'Vm kb cbeq'
    function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq'
    derivative_order = 2
  [../]
  [./omegad]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegad
    material_property_names = 'Vm kd cdeq'
    function = '-0.5*w^2/Vm^2/kd-w/Vm*cdeq'
    derivative_order = 2
  [../]
  [./rhoa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhoa
    material_property_names = 'Vm ka caeq'
    function = 'w/Vm^2/ka + caeq/Vm'
    derivative_order = 2
  [../]
  [./rhob]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhob
    material_property_names = 'Vm kb cbeq'
    function = 'w/Vm^2/kb + cbeq/Vm'
    derivative_order = 2
  [../]
  [./rhod]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhod
    material_property_names = 'Vm kd cdeq'
    function = 'w/Vm^2/kd + cdeq/Vm'
    derivative_order = 2
  [../]
  [./c]
    type = ParsedMaterial
    material_property_names = 'Vm rhoa rhob rhod ha hb hd'
    function = 'Vm * (ha * rhoa + hb * rhob + hd * rhod)'
    f_name = c
  [../]
  [./const]
    type = GenericConstantMaterial
    prop_names =  'kappa_c  kappa   L   D    Vm   ka    caeq kb    cbeq  kd    cdeq  gab gad gbd  mu  tgrad_corr_mult'
    prop_values = '0        1       1.0 1.0  1.0  10.0  0.1  10.0  0.9   10.0  0.5   1.5 1.5 1.5  1.0 0.0'
  [../]
  [./Mobility]
    type = DerivativeParsedMaterial
    f_name = Dchi
    material_property_names = 'D chi'
    function = 'D*chi'
    derivative_order = 2
  [../]
  [./chi]
    type = DerivativeParsedMaterial
    f_name = chi
    material_property_names = 'Vm ha(etaa0,etab0,etad0) ka hb(etaa0,etab0,etad0) kb hd(etaa0,etab0,etad0) kd'
    function = '(ha/ka + hb/kb + hd/kd) / Vm^2'
    args = 'etaa0 etab0 etad0'
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[VectorPostprocessors]
  [./etaa0]
    type = LineValueSampler
    variable = etaa0
    start_point = '-15 0 0'
    end_point = '15 0 0'
    num_points = 61
    sort_by = x
    execute_on = 'initial timestep_end final'
  [../]
  [./etab0]
    type = LineValueSampler
    variable = etab0
    start_point = '-15 0 0'
    end_point = '15 0 0'
    num_points = 61
    sort_by = x
    execute_on = 'initial timestep_end final'
  [../]
  [./etad0]
    type = LineValueSampler
    variable = etad0
    start_point = '-15 0 0'
    end_point = '15 0 0'
    num_points = 61
    sort_by = x
    execute_on = 'initial timestep_end final'
  [../]
[]

[Executioner]
  type = Transient
  nl_max_its = 15
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = -pc_type
  petsc_options_value = asm
  l_max_its = 15
  l_tol = 1.0e-3
  nl_rel_tol = 1.0e-8
  start_time = 0.0
  num_steps = 20
  nl_abs_tol = 1e-10
  dt = 1.0
[]

[Outputs]
  [./exodus]
    type = Exodus
    execute_on = 'initial timestep_end final'
    interval = 1
  [../]
  [./csv]
    type = CSV
    execute_on = 'initial timestep_end final'
    interval = 1
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_1/plane1_template1_sm.i

[Mesh]
  file = plane1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_x = diag_saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking_multiple_softening.i

# Test of cracking with direction-specific release models in 3
# directions. Block is first pulled in one direction, and then
# held while it is sequentially pulled in the other two
# directions. Poisson's ratio is zero so that the cracking in one
# direction doesn't affect the others.

# Softening in the three directions should follow the laws for the
# prescribed models in the three directions, which are power law (x),
# exponential (y), and abrupt (z).

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./displx]
    type = PiecewiseLinear
    x = '0 1 2 3'
    y = '0 1 1 1'
  [../]
  [./disply]
    type = PiecewiseLinear
    x = '0 1 2 3'
    y = '0 0 1 1'
  [../]
  [./displz]
    type = PiecewiseLinear
    x = '0 1 2 3'
    y = '0 0 0 1'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[BCs]
  [./pullx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = right
    function = displx
  [../]
  [./pully]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = disply
  [../]
  [./pullz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = displz
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.8e7
    poissons_ratio = 0
  [../]
  [./elastic_stress]
    type = ComputeSmearedCrackingStress
    cracking_stress = 1.68e6
    softening_models = 'power_law_softening exponential_softening abrupt_softening'
    prescribed_crack_directions = 'x y z'
  [../]
  [./power_law_softening]
    type = PowerLawSoftening
    stiffness_reduction = 0.3333
  [../]
  [./exponential_softening]
    type = ExponentialSoftening
  [../]
  [./abrupt_softening]
    type = AbruptSoftening
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -sub_pc_type'
  petsc_options_value = '101                asm      lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-5
  start_time = 0.0
  end_time = 3.0
  dt = 0.01
[]

[Outputs]
  exodus = true
[]

test/tests/predictors/simple/predictor_test.i

# The purpose of this test is to test the simple predictor.  This is a very
# small, monotonically loaded block of material.  If things are working right,
# the predictor should come very close to exactly nailing the solution on steps
# after the first step.

# The main thing to check here is that when the predictor is applied in the
# second step, the initial residual is almost zero.

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 3
  ny = 3
[]

[Functions]
  [./ramp1]
    type = ParsedFunction
    value = 't'
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./bot]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 0.0
  [../]
  [./ss2_x]
    type = FunctionDirichletBC
    variable = u
    boundary = top
    function = ramp1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-14

  start_time = 0.0
  dt = 0.5
  end_time = 1.0

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Postprocessors]
  [./final_residual]
    type = Residual
    residual_type = final
  [../]
  [./initial_residual_before]
    type = Residual
    residual_type = initial_before_preset
  [../]
  [./initial_residual_after]
    type = Residual
    residual_type = initial_after_preset
  [../]
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/actions/basicthm_th.i

# PorousFlowBasicTHM action with coupling_type = ThermoHydroGenerator
# (no mechanical effects)

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 3
    xmax = 10
    ymax = 3
  []
  [./aquifer]
    input = gen
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 1 0'
    top_right = '10 2 0'
  [../]
  [./injection_area]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = 'injection_area'
    normal = '-1 0 0'
    input = 'aquifer'
  [../]
  [./outflow_area]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = 'outflow_area'
    normal = '1 0 0'
    input = 'injection_area'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caprock aquifer'
    input = 'outflow_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
    initial_condition = 1e6
  [../]
  [./temperature]
    initial_condition = 293
    scaling = 1e-6
  [../]
[]

[PorousFlowBasicTHM]
  porepressure = porepressure
  temperature = temperature
  coupling_type = ThermoHydro
  gravity = '0 0 0'
  fp = simple_fluid
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1.5e6
    boundary = injection_area
  [../]
  [./constant_injection_temperature]
    type = DirichletBC
    variable = temperature
    value = 313
    boundary = injection_area
  [../]
  [./constant_outflow_porepressure]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = outflow_area
    pt_vals = '0 1e9'
    multipliers = '0 1e9'
    flux_function = 1e-6
    PT_shift = 1e6
  [../]
  [./constant_outflow_temperature]
    type = DirichletBC
    variable = temperature
    value = 293
    boundary = outflow_area
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.8
    solid_bulk_compliance = 2e-7
    fluid_bulk_modulus = 1e7
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1e-13 0 0   0 1e-13 0   0 0 1e-13'
  [../]
  [./permeability_caprock]
    type = PorousFlowPermeabilityConst
    block = caprock
    permeability = '1e-15 0 0   0 1e-15 0   0 0 1e-15'
  [../]
  [./thermal_expansion]
    type = PorousFlowConstantThermalExpansionCoefficient
    biot_coefficient = 0.8
    drained_coefficient = 0.003
    fluid_coefficient = 0.0002
  [../]
  [./rock_internal_energy]
    type = PorousFlowMatrixInternalEnergy
    density = 2500.0
    specific_heat_capacity = 1200.0
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '10 0 0  0 10 0  0 0 10'
    block = 'caprock aquifer'
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1e4
  dt = 1e3
  nl_abs_tol = 1e-15
  nl_rel_tol = 1e-14
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/relaxation/sub_relaxed_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
  [./time_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 2
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

modules/heat_conduction/test/tests/convective_flux_function/convective_flux_function.i

# This is a test of the ConvectiveFluxFunction BC.
# There is a single 1x1 element with a prescribed temperature
# on the left side and a convective flux BC on the right side.
# The temperature on the left is 100, and the far-field temp is 200.
# The conductance of the body (conductivity * length) is 10
#
# If the conductance in the BC is also 10, the temperature on the
# right side of the solid element should be 150 because half of the
# temperature drop should occur over the body and half in the BC.
#
# The integrated flux is deltaT * conductance, or -50 * 10 = -500.
# The negative sign indicates that heat is going into the body.
#
# The conductance is defined multiple ways using this input, and
# as long as it evaluates to 10, the result described above will
# be obtained.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[Problem]
  extra_tag_vectors = 'bcs'
[]

[Variables]
  [temp]
    initial_condition = 100.0
  []
[]

[AuxVariables]
  [flux]
  []
[]

[AuxKernels]
  [flux]
    type = TagVectorAux
    variable = flux
    v = temp
    vector_tag = 'bcs'
    execute_on = timestep_end
  []
[]

[Kernels]
  [heat_conduction]
    type = HeatConduction
    variable = temp
  []
[]

[Materials]
  [thermal]
    type = HeatConductionMaterial
    thermal_conductivity = 10.0
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = temp
    boundary = left
    value = 100.0
  []
  [right]
    type = ConvectiveFluxFunction
    variable = temp
    boundary = right
    T_infinity = 200.0
    coefficient = 10.0 #This will behave as described in the header of this file if this evaluates to 10
    extra_vector_tags = 'bcs'
  []
[]

[Postprocessors]
  [integrated_flux]
    type = NodalSum
    variable = flux
    boundary = right
  []
[]

[Executioner]
  type = Transient
  start_time = 0.0
  end_time = 1.0
  dt = 1.0
  nl_rel_tol=1e-12
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/ad_elastic/rz_small_elastic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
  [./disp_z]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = ADStressDivergenceRZTensors
    component = 0
    variable = disp_r
  [../]
  [./stress_z]
    type = ADStressDivergenceRZTensors
    component = 1
    variable = disp_z
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0
  [../]
  [./axial]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeAxisymmetricRZSmallStrain
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/anisotropic_patch/anisotropic_patch_test.i

# Patch Test

# This test is designed to compute constant xx, yy, zz, xy, yz, and zx
#  stress on a set of irregular hexes.  The mesh is composed of one
#  block with seven elements.  The elements form a unit cube with one
#  internal element.  There is a nodeset for each exterior node.

# The cube is displaced by 1e-6 units in x, 2e-6 in y, and 3e-6 in z.
#  The faces are sheared as well (1e-6, 2e-6, and 3e-6 for xy, yz, and
#  zx).  This gives a uniform strain/stress state for all six unique
#  tensor components.

# With Young's modulus at 1e6 and Poisson's ratio at 0, the shear
#  modulus is 5e5 (G=E/2/(1+nu)).  Therefore,
#
#  stress xx = 1e6 * 1e-6 = 1
#  stress yy = 1e6 * 2e-6 = 2
#  stress zz = 1e6 * 3e-6 = 3
#  stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 5e5 * 2e-6 / 2 = 1
#  stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = '1 2 3 4 5 6 7'
[]

[Mesh]#Comment
  file = anisotropic_patch_test.e
[] # Mesh

[Functions]
  [./rampConstant1]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1e-6
  [../]
  [./rampConstant2]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 2e-6
  [../]
  [./rampConstant3]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 3e-6
  [../]
  [./rampConstant4]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 4e-6
  [../]
  [./rampConstant6]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 6e-6
  [../]
[] # Functions

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[] # Variables

[AuxVariables]
  [./elastic_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[] # AuxVariables

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx vonmises_stress hydrostatic_stress firstinv_stress secondinv_stress thirdinv_stress'
  [../]
[]

[AuxKernels]
  [./elastic_energy]
    type = ElasticEnergyAux
    variable = elastic_energy
  [../]
[] # AuxKernels

[BCs]
  [./node1_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./node1_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = rampConstant2
  [../]
  [./node1_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 1
    function = rampConstant3
  [../]

  [./node2_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = rampConstant1
  [../]
  [./node2_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = rampConstant2
  [../]
  [./node2_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 2
    function = rampConstant6
  [../]

  [./node3_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 3
    function = rampConstant1
  [../]
  [./node3_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./node3_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 3
    function = rampConstant3
  [../]

  [./node4_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./node4_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
  [./node4_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]

  [./node5_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 5
    function = rampConstant1
  [../]
  [./node5_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = rampConstant4
  [../]
  [./node5_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 5
    function = rampConstant3
  [../]

  [./node6_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 6
    function = rampConstant2
  [../]
  [./node6_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 6
    function = rampConstant4
  [../]
  [./node6_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 6
    function = rampConstant6
  [../]

  [./node7_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 7
    function = rampConstant2
  [../]
  [./node7_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 7
    function = rampConstant2
  [../]
  [./node7_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 7
    function = rampConstant3
  [../]

  [./node8_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 8
    function = rampConstant1
  [../]
  [./node8_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 8
    function = rampConstant2
  [../]
  [./node8_z]
    type = DirichletBC
    variable = disp_z
    boundary = 8
    value = 0.0
  [../]
[] # BCs

[Materials]
  [./elastic_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1e6 0.0 0.0 1e6 0.0 1e6 0.5e6 0.5e6 0.5e6'
    fill_method = symmetric9
    euler_angle_1 = 18.0
    euler_angle_2 = 43.0
    euler_angle_3 = 177.0
#    Isotropic material constants
#    The three euler angles do not matter
#    youngs_modulus = 1e6
#    poissons_ratio = 0.0
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[] # Materials

[Executioner]
  type = Transient

  nl_abs_tol = 1e-10
  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[] # Executioner

[Outputs]
  file_base = anisotropic_patch_test_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

modules/tensor_mechanics/test/tests/hyperelastic_viscoplastic/one_elem_multi.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./peeq_soft]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./peeq_hard]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./peeq_soft]
    type = MaterialRealAux
    variable = peeq_soft
    property = ep_eqv1
    execute_on = timestep_end
    block = 0
  [../]
  [./peeq_hard]
    type = MaterialRealAux
    variable = peeq_hard
    property = ep_eqv2
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = '0.01*t'
  [../]
[]

[UserObjects]
  [./flowstress1]
    type = HEVPRambergOsgoodHardening
    yield_stress = 100
    hardening_exponent = 0.1
    reference_plastic_strain = 0.002
    intvar_prop_name = ep_eqv1
  [../]
  [./flowstress2]
    type = HEVPRambergOsgoodHardening
    yield_stress = 100
    hardening_exponent = 0.3
    reference_plastic_strain = 0.002
    intvar_prop_name = ep_eqv2
  [../]
  [./flowrate1]
    type = HEVPFlowRatePowerLawJ2
    reference_flow_rate = 0.0001
    flow_rate_exponent = 50.0
    flow_rate_tol = 1
    strength_prop_name = flowstress1
  [../]
  [./flowrate2]
    type = HEVPFlowRatePowerLawJ2
    reference_flow_rate = 0.0001
    flow_rate_exponent = 50.0
    flow_rate_tol = 1
    strength_prop_name = flowstress2
  [../]
  [./ep_eqv1]
     type = HEVPEqvPlasticStrain
     intvar_rate_prop_name = ep_eqv_rate1
  [../]
  [./ep_eqv_rate1]
     type = HEVPEqvPlasticStrainRate
     flow_rate_prop_name = flowrate1
  [../]
  [./ep_eqv2]
     type = HEVPEqvPlasticStrain
     intvar_rate_prop_name = ep_eqv_rate2
  [../]
  [./ep_eqv_rate2]
     type = HEVPEqvPlasticStrainRate
     flow_rate_prop_name = flowrate2
  [../]
[]

[Materials]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'ux uy uz'
  [../]
  [./viscop]
    type = FiniteStrainHyperElasticViscoPlastic
    block = 0
    resid_abs_tol = 1e-18
    resid_rel_tol = 1e-8
    maxiters = 50
    max_substep_iteration = 5
    flow_rate_user_objects = 'flowrate1 flowrate2'
    strength_user_objects = 'flowstress1 flowstress2'
    internal_var_user_objects = 'ep_eqv1 ep_eqv2'
    internal_var_rate_user_objects = 'ep_eqv_rate1 ep_eqv_rate2'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '2.8e5 1.2e5 1.2e5 2.8e5 1.2e5 2.8e5 0.8e5 0.8e5 0.8e5'
    fill_method = symmetric9
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./peeq_soft]
    type = ElementAverageValue
    variable = peeq_soft
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./peeq_hard]
    type = ElementAverageValue
    variable = peeq_hard
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.02

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  dtmax = 10.0
  nl_rel_tol = 1e-10
  dtmin = 0.02
  num_steps = 10
[]

[Outputs]
  file_base = one_elem_multi
  exodus = true
  csv = false
[]

test/tests/userobjects/shape_element_user_object/shape_element_user_object.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = (x-0.5)^2
    [../]
  [../]
  [./v]
    order = THIRD
    family = HERMITE
    [./InitialCondition]
      type = FunctionIC
      function = (y-0.5)^2
    [../]
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./time_u]
    type = TimeDerivative
    variable = u
  [../]
  [./time_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[UserObjects]
  [./test]
    type = TestShapeElementUserObject
    u = u
    # first order lagrange variables have 4 DOFs per element
    u_dofs = 4
    v = v
    # third order hermite variables have 16 DOFs per element
    v_dofs = 16
    # as this userobject computes quantities for both the residual AND the jacobian
    # it needs to have these execute_on flags set.
    execute_on = 'linear nonlinear'
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  num_steps = 2
[]

test/tests/postprocessors/relative_solution_difference_norm/test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  elem_type = QUAD4
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./ffn]
    type = ParsedFunction
    value = '2 - t'
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./ffn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 0
  [../]
[]

[Postprocessors]
  [./rsn]
    type = RelativeSolutionDifferenceNorm
    execute_on = TIMESTEP_END
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/fflux03.i

# 2phase (PP), 2components (that exist in both phases), constant viscosity, constant insitu permeability
# density with constant bulk, Corey relative perm, nonzero gravity, unsaturated with vanGenuchten
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]


[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
    gravity = '-1 -0.1 0'
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = ppgas
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/porous_flow/test/tests/jacobian/brineco2_liquid_2.i

# Tests correct calculation of properties derivatives in PorousFlowFluidState
# for conditions that give a single liquid phase, including salt as a nonlinear variable

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pgas]
  [../]
  [./zi]
  [../]
  [./xnacl]
  [../]
[]

[ICs]
  [./pgas]
    type = RandomIC
    min = 5e6
    max = 8e6
    variable = pgas
  [../]
  [./z]
    type = RandomIC
    min = 0.01
    max = 0.03
    variable = zi
  [../]
  [./xnacl]
    type = RandomIC
    min = 0.01
    max = 0.15
    variable = xnacl
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = zi
    fluid_component = 1
  [../]
  [./mass2]
    type = PorousFlowMassTimeDerivative
    variable = xnacl
    fluid_component = 2
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    variable = pgas
    fluid_component = 0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    variable = zi
    fluid_component = 1
  [../]
  [./adv2]
    type = PorousFlowAdvectiveFlux
    variable = xnacl
    fluid_component = 2
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi xnacl'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
    pc_max = 1e3
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = zi
    temperature_unit = Celsius
    xnacl = xnacl
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

test/tests/functions/image_function/component.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file_base = stack/test
    file_suffix = png
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    component = 0
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[../]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest11.i

# tet elements
[Mesh]
  type = FileMesh
  file = pyramid.e
[]

[MeshModifiers]
  [./sbb2]
    type = SubdomainBoundingBox
    block_id = 2
    bottom_left = '-0.5 -0.5 -0.5'
    top_right = '0.5 0.5 0.5'
  [../]
  [./swiss_cheese2]
    type = BlockDeleter
    block_id = 2
    depends_on = 'sbb2'
  [../]
  [./sbb3]
    type = SubdomainBoundingBox
    block_id = 3
    bottom_left = '-5 -5 -3'
    top_right = '-2 -2 -1'
  [../]
  [./swiss_cheese3]
    type = BlockDeleter
    block_id = 3
    depends_on = 'sbb3'
  [../]
  [./sbb4]
    type = SubdomainBoundingBox
    block_id = 4
    bottom_left = '-1 2 -2'
    top_right = '1 5 0'
  [../]
  [./swiss_cheese4]
    type = BlockDeleter
    block_id = 4
    depends_on = 'sbb4'
  [../]
  [./sbb5]
    type = OrientedSubdomainBoundingBox
    block_id = 5
    center = '2.4 -1.4 0.4'
    height = 3
    length = 8
    length_direction = '-2 1 -1'
    width = 3
    width_direction = '1 2 0'
  [../]
  [./swiss_cheese5]
    type = BlockDeleter
    block_id = 5
    depends_on = 'sbb5'
  [../]
  [./sbb6]
    type = OrientedSubdomainBoundingBox
    block_id = 6
    center = '-1 0.4 2.2'
    height = 1
    length = 8
    length_direction = '2 -1 -1'
    width = 1
    width_direction = '1 2 0'
  [../]
  [./swiss_cheese6]
    type = BlockDeleter
    block_id = 6
    depends_on = 'sbb6'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = top
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 100
  dt = 100

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/combined_plasticity_temperature/plasticity_temperature_dep_yield.i

#
# This is a test of the piece-wise linear strain hardening model using the
# small strain formulation.  This test exercises the temperature-dependent
# yield stress.
#
# Test procedure:
# 1. The element is pulled to and then beyond the yield stress for a given
# temperature.
# 2. The displacement is then constant while the temperature increases and
# the yield stress decreases.  This results in a lower stress with more
# plastic strain.
# 3. The temperature decreases beyond its original value giving a higher
# yield stress.  The displacement increases, causing increases stress to
# the new yield stress.
# 4. The temperature and yield stress are constant with increasing
# displacement giving a constant stress and more plastic strain.
#
# Plotting total_strain_yy on the x axis and stress_yy on the y axis shows
# the stress history in a clear way.
#
#  s |
#  t |            *****
#  r |           *
#  e |   *****  *
#  s |  *    * *
#  s | *     *
#    |*
#    +------------------
#           total strain
#

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy plastic_strain_xx plastic_strain_yy plastic_strain_zz'
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1     2    4    5    6'
    y = '0 0.025 0.05 0.05 0.06 0.085'
  [../]
  [./yield]
    type = PiecewiseLinear
    x = '400 500 600'
    y = '6e3 5e3 4e3'
  [../]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2   3   4'
    y = '500 500 500 600 400'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = top_pull
  [../]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp]
    type = FunctionDirichletBC
    variable = temp
    function = temp
    boundary = left
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    youngs_modulus = 2.0e5
    poissons_ratio = 0.3
  [../]
  [./creep_plas]
    type = ComputeMultipleInelasticStress
    tangent_operator = elastic
    block = 0
    inelastic_models = 'plasticity'
    max_iterations = 50
    absolute_tolerance = 1e-05
  [../]
  [./plasticity]
    type = IsotropicPlasticityStressUpdate
    block = 0
    hardening_constant = 0
    yield_stress_function = yield
    temperature = temp
  [../]
  [./heat_conduction]
    type = HeatConductionMaterial
    block = 0
    specific_heat = 1
    thermal_conductivity = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 6
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

test/tests/bcs/sin_bc/sin_dirichlet_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Functions]
  [./initial_value]
    type = ParsedFunction
    value = 'x'
  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = initial_value
    [../]
  [../]
[]

[Kernels]
  active = 'diff ie'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  active = 'left right'

  [./left]
    type = SinDirichletBC
    variable = u
    boundary = 3
    initial = 0.0
    final = 1.0
    duration = 10.0
  [../]

  [./right]
    type = SinDirichletBC
    variable = u
    boundary = 1
    initial = 1.0
    final = 0.0
    duration = 10.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  num_steps = 10
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/check_error/poissons_ratio_sm.i

[Mesh]
  file = cube.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./goo]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/phase_field/test/tests/MultiPhase/penalty.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 14
  ny = 10
  nz = 0
  xmin = 10
  xmax = 40
  ymin = 15
  ymax = 35
  elem_type = QUAD4
[]

[GlobalParams]
  penalty = 5
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 25.0
      y1 = 25.0
      radius = 6.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 3.0
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]

  [./eta1]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 30.0
      y1 = 25.0
      radius = 4.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 2.0
    [../]
  [../]
  [./eta2]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.5
  [../]
[]

[Kernels]
  [./deta1dt]
    type = TimeDerivative
    variable = eta1
  [../]
  [./ACBulk1]
    type = AllenCahn
    variable = eta1
    args = 'c eta2'
    f_name = F
  [../]
  [./ACInterface1]
    type = ACInterface
    variable = eta1
    kappa_name = kappa_eta
  [../]
  [./penalty1]
    type = SwitchingFunctionPenalty
    variable = eta1
    etas    = 'eta1 eta2'
    h_names = 'h1   h2'
  [../]

  [./deta2dt]
    type = TimeDerivative
    variable = eta2
  [../]
  [./ACBulk2]
    type = AllenCahn
    variable = eta2
    args = 'c eta1'
    f_name = F
  [../]
  [./ACInterface2]
    type = ACInterface
    variable = eta2
    kappa_name = kappa_eta
  [../]
  [./penalty2]
    type = SwitchingFunctionPenalty
    variable = eta2
    etas    = 'eta1 eta2'
    h_names = 'h1   h2'
  [../]

  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    args = 'eta1 eta2'
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time1]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'L kappa_eta'
    prop_values = '1 1        '
  [../]
  [./consts2]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1 1'
  [../]

  [./hsum]
    type = ParsedMaterial
    function = h1+h2
    f_name = hsum
    material_property_names = 'h1 h2'
    args = 'c'
    outputs = exodus
  [../]

  [./switching1]
    type = SwitchingFunctionMaterial
    function_name = h1
    eta = eta1
    h_order = SIMPLE
  [../]
  [./switching2]
    type = SwitchingFunctionMaterial
    function_name = h2
    eta = eta2
    h_order = SIMPLE
  [../]

  [./barrier]
    type = MultiBarrierFunctionMaterial
    etas = 'eta1 eta2'
  [../]

  [./free_energy_A]
    type = DerivativeParsedMaterial
    f_name = Fa
    args = 'c'
    function = '(c-0.1)^2'
    derivative_order = 2
  [../]
  [./free_energy_B]
    type = DerivativeParsedMaterial
    f_name = Fb
    args = 'c'
    function = '(c-0.9)^2'
    derivative_order = 2
  [../]

  [./free_energy]
    type = DerivativeMultiPhaseMaterial
    f_name = F
    fi_names = 'Fa   Fb'
    hi_names = 'h1   h2'
    etas     = 'eta1 eta2'
    args = 'c'
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  l_max_its = 15
  l_tol = 1.0e-6

  nl_max_its = 50
  nl_rel_tol = 1.0e-7
  nl_abs_tol = 1.0e-9

  start_time = 0.0
  num_steps = 2
  dt = 0.05
  dtmin = 0.01
[]

[Debug]
  # show_var_residual_norms = true
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/errors/master_missing_control.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_left uniform_right'
    execute_on = 'initial timestep_end'
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub_missing_control.i
    sampler = sample
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform9_cosserat.i

# Using Cosserat with large layer thickness, so this should reduce to standard
# Using CappedMohrCoulombCosserat with tensile failure only
# A single unit element is stretched in a complicated way that
# the trial stress is
#        1.51515             0.8        0.666667
#            0.8        -3.74545    -1.85037e-17
#            0.7    -1.66533e-17        -1.27273
# with symmetric part
#        1.51515             0.8        0.6833
#            0.8        -3.74545    -1.85037e-17
#            0.6833  -1.66533e-17      -1.27273
#
# This has eigenvalues
# la = {-3.86844, 1.78368, -1.41827}
# and eigenvectors
#
# {0.15183, -0.987598, -0.03997},
# {-0.966321, -0.139815, -0.216044},
# {-0.207777, -0.0714259, 0.975565}}
#
# The tensile strength is 0.5 and Young=1 and Poisson=0.25,
# with E_0000/E_0011 = nu / (1 - nu) = 0.333333
# Using smoothing_tol=0.01, the return-map algorithm should
# return to stress_I = 0.5, which is a reduction of 1.28368, so
# stress_II = -1.41827 - 1.28368 * 0.33333 = -1.846
# stress_III = -3.86844 - 1.28368 * 0.33333 = -4.296
#
# The final stress symmetric stress is
#
# {0.29, 0.69, 0.51},
# {0.69, -4.19, -0.03},
# {0.51, -0.03, -1.74}
#
# and a final unsymmetric stress of
#
# {0.29, 0.69, 0.49},
# {0.69, -4.19, -0.03},
# {0.52, -0.03, -1.74}

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '3*x-y+z'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '3*x-4*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = 'x-2*z'
  [../]
  [./wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = 'front back'
    value = 0.0
  [../]
  [./wc_y]
    type = DirichletBC
    variable = wc_y
    boundary = 'front back'
    value = 0.0
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
  [./stress_I]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_II]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_III]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_I]
    type = RankTwoScalarAux
    scalar_type = MaxPrincipal
    rank_two_tensor = stress
    variable = stress_I
    selected_qp = 0
  [../]
  [./stress_II]
    type = RankTwoScalarAux
    scalar_type = MidPrincipal
    rank_two_tensor = stress
    variable = stress_II
    selected_qp = 0
  [../]
  [./stress_III]
    type = RankTwoScalarAux
    scalar_type = MinPrincipal
    rank_two_tensor = stress
    variable = stress_III
    selected_qp = 0
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = stress_I
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = stress_II
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = stress_III
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yx]
    type = PointValue
    point = '0 0 0'
    variable = stress_yx
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zx]
    type = PointValue
    point = '0 0 0'
    variable = stress_zx
  [../]
  [./s_zy]
    type = PointValue
    point = '0 0 0'
    variable = stress_zy
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1.0
    joint_shear_stiffness = 2.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
  [../]
  [./tensile]
    type = CappedMohrCoulombCosseratStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.001
    yield_function_tol = 1.0E-12
    host_youngs_modulus = 1.0
    host_poissons_ratio = 0.25
  [../]
  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  nl_abs_tol = 1E-10
  type = Transient
[]


[Outputs]
  file_base = small_deform9_cosserat
  csv = true
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest6.i

# 3D, non-concave
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 2
  xmin = 0
  xmax = 4
  ymin = 0
  ymax = 4
  zmin = 0
  zmax = 2
[]

[MeshModifiers]
  [./SubdomainBoundingBox1]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '1 2 1'
  [../]
  [./SubdomainBoundingBox2]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '1 1 0'
    top_right = '3 3 1'
  [../]
  [./SubdomainBoundingBox3]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '2 2 1'
    top_right = '3 3 2'
  [../]
  [./ed0]
    type = BlockDeleter
    block_id = 1
    depends_on = 'SubdomainBoundingBox1 SubdomainBoundingBox2 SubdomainBoundingBox3'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform1_uo.i

# apply uniform stretch in x, y and z directions.
# With cohesion = 10, friction_angle = 60deg, tip_smoother = 4, the
# algorithm should return to
# sigma_m = (10*Cos(60) - 4)/Sin(60) = 1.1547

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform1_uo
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/phase_field/test/tests/anisotropic_mobility/nonsplit.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  xmax = 15.0
  ymax = 15.0
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
    [./InitialCondition]
      type = CrossIC
      x1 = 0.0
      x2 = 30.0
      y1 = 0.0
      y2 = 30.0
    [../]
  [../]
[]

[Kernels]
  [./cres]
    type = CahnHilliardAniso
    variable = c
    mob_name = M
    f_name = F
  [../]
  [./int]
    type = CHInterfaceAniso
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./kappa]
    type = GenericConstantMaterial
    prop_names = 'kappa_c'
    prop_values = '2.0'
  [../]
  [./mob]
    type = ConstantAnisotropicMobility
    tensor = '0.1 0 0
              0   1 0
              0   0 0'
    M_name = M
  [../]
  [./free_energy]
    type = MathEBFreeEnergy
    f_name = F
    c = c
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31      lu      1'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 50
  nl_rel_tol = 1.0e-10

  dt = 10.0
  num_steps = 2
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

modules/combined/test/tests/hertz_contact/hertz_contact.i

# Hertz Contact: Sphere on sphere

# Spheres have the same radius, Young's modulus, and Poisson's ratio.

# Define E:
# 1/E = (1-nu1^2)/E1 + (1-nu2^2)/E2
#
# Effective radius R:
# 1/R = 1/R1 + 1/R2
#
# F is the applied compressive load.
#
# Area of contact a::
# a^3 = 3FR/4E
#
# Depth of indentation d:
# d = a^2/R
#
#
# Let R1 = R2 = 2.  Then R = 1.
#
# Let nu1 = nu2 = 0.25, E1 = E2 = 1.40625e7.  Then E = 7.5e6.
#
# Let F = 10000.  Then a = 0.1, d = 0.01.
#

[Mesh]#Comment
  file = hertz_contact.e
  displacements = 'disp_x disp_y disp_z'
[] # Mesh

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 795.77471545947674 # 10000/pi/2^2
  [../]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.  1.    2.'
    y = '0. -0.01 -0.01'
  [../]
[] # Functions

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

[] # Variables

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydrostatic]
    order = CONSTANT
    family = MONOMIAL
  [../]

[] # AuxVariables

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]

  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
  [../]
  [./hydrostatic]
    type = MaterialTensorAux
    tensor = stress
    variable = hydrostatic
    quantity = hydrostatic
  [../]

[] # AuxKernels

[BCs]

  [./base_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1000
    value = 0.0
  [../]
  [./base_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1000
    value = 0.0
  [../]
  [./base_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1000
    value = 0.0
  [../]

  [./symm_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./symm_z]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]
  [./disp_y]
    type = FunctionDirichletBC
    variable = disp_y
    component = 1
    boundary = 2
    function = disp_y
  [../]

[] # BCs

[Contact]
  [./dummy_name]
    master = 1000
    slave = 100
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    penalty = 1e7
  [../]
[]

[Materials]

  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1.40625e7
    poissons_ratio = 0.25
  [../]
  [./stiffStuff2] # Rigid block
    type = Elastic
    block = 1000

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

[] # Materials

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'


  line_search = 'none'


  nl_abs_tol = 1e-7

  l_max_its = 200

  start_time = 0.0
  dt = 0.5
  end_time = 2.0
[] # Executioner

[Postprocessors]
  [./maxdisp]
    type = NodalVariableValue
    nodeid = 122 # 123-1 where 123 is the exodus node number of the top-center node
    variable = disp_y
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

modules/combined/test/tests/solid_mechanics/LinearStrainHardening/LinearStrainHardeningRestart1.i

#

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = LinearStrainHardening_test.e
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_mag]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t/5.0
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]

  [./plastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]

  [./plastic_strain_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]

  [./plastic_strain_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]

  [./plastic_strain_mag]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = plastic_strain_mag
  [../]

 []


[BCs]

  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

[]


[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'isoplas'
    block = '1'
  [../]
  [./isoplas]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 2.4e2
    hardening_constant = 1206
    relative_tolerance = 1e-25
    absolute_tolerance = 1e-5
  [../]
[]



[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
  start_time = 0.0
  end_time = 0.0105
  num_steps = 4
  dt = 1.5e-3
[]



[Outputs]
  exodus = true
  csv = true
  [./out]
    type = Checkpoint
    num_files = 1
  [../]
[]

modules/xfem/test/tests/crack_tip_enrichment/penny_crack_3d.i

[XFEM]
  qrule = volfrac
  output_cut_plane = true
  use_crack_tip_enrichment = true
  crack_front_definition = crack_front
  enrichment_displacements = 'enrich1_x enrich2_x enrich3_x enrich4_x enrich1_y enrich2_y enrich3_y enrich4_y enrich1_z enrich2_z enrich3_z enrich4_z'
  displacements = 'disp_x disp_y disp_z'
  cut_off_boundary = all
  cut_off_radius = 0.3
[]

[UserObjects]
  [./circle_cut_uo]
    type = CircleCutUserObject
    cut_data = '0 0 0
                0.5 0 0
                0 0.5 0'
  [../]
  [./crack_front]
    type = CrackFrontDefinition
    crack_direction_method = CurvedCrackFront
    crack_front_points = '0.500000000000000                   0                   0
                          0.000000000000000   0.500000000000000                   0
                         -0.500000000000000   0.000000000000000                   0
                         -0.000000000000000  -0.500000000000000                   0'
  [../]
[]

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 9
    ny = 9
    nz = 3
    xmin = -1.0
    xmax = 1.0
    ymin = -1.0
    ymax = 1.0
    zmin = -0.75
    zmax = 0.75
    elem_type = HEX8
  []
  [./all_node]
    type = BoundingBoxNodeSetGenerator
    input = gen
    new_boundary = 'all'
    top_right = '1 1 1'
    bottom_left = '-1 -1 -1'
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
  type = RankTwoAux
  rank_two_tensor = stress
  variable = stress_xx
  index_i = 0
  index_j = 0
  execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = false
    volumetric_locking_correction = false
  [../]
[]

[BCs]
  [./top_z]
    type = Pressure
    variable = disp_z
    boundary = front
    component = 2
    factor = -1
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = back
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = back
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = back
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeCrackTipEnrichmentSmallStrain
    displacements = 'disp_x disp_y disp_z'
    crack_front_definition = crack_front
    enrichment_displacements = 'enrich1_x enrich2_x enrich3_x enrich4_x enrich1_y enrich2_y enrich3_y enrich4_y enrich1_z enrich2_z enrich3_z enrich4_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  [./Quadrature]
    type = GAUSS
    order = SECOND
  [../]

  # controls for linear iterations
  l_max_its = 10
  l_tol = 1e-2

  # controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-12

  # time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/examples/reservoir_model/regular_grid.i

# SPE 10 comparative problem - model 1
# Data and description from https://www.spe.org/web/csp/datasets/set01.htm
# Simple input file that just establishes gravity equilibrium in the model
#
# Heterogeneous permeability is included by reading data from an external file
# using the PiecewiseMultilinear function, and saving that data to an elemental
# AuxVariable that is then used in PorousFlowPermeabilityConstFromVar

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 20
  xmax = 762
  ymax = 15.24
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 -9.81 0'
  temperature_unit = Celsius
[]

[Variables]
  [porepressure]
    initial_condition = 20e6
  []
[]

[Functions]
  [perm_md_fcn]
    type = PiecewiseMultilinear
    data_file = spe10_case1.data
  []
[]

[BCs]
  [top]
    type = DirichletBC
    variable = porepressure
    value = 20e6
    boundary = top
  []
[]

[AuxVariables]
  [temperature]
    initial_condition = 50
  []
  [xnacl]
    initial_condition = 0.1
  []
  [porosity]
    family = MONOMIAL
    order = CONSTANT
    initial_condition = 0.2
  []
  [perm_md]
    family = MONOMIAL
    order = CONSTANT
  []
  [perm]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[Kernels]
  [mass0]
    type = PorousFlowMassTimeDerivative
    variable = porepressure
  []
  [flux0]
    type = PorousFlowFullySaturatedDarcyFlow
    variable = porepressure
  []
[]

[AuxKernels]
  [perm_md]
    type = FunctionAux
    function = perm_md_fcn
    variable = perm_md
    execute_on = initial
  []
  [perm]
    type = ParsedAux
    variable = perm
    args = perm_md
    function = '9.869233e-16*perm_md'
    execute_on = initial
  []
[]

[UserObjects]
  [dictator]
    type = PorousFlowDictator
    porous_flow_vars = porepressure
    number_fluid_phases = 1
    number_fluid_components = 1
  []
[]

[Modules]
  [FluidProperties]
    [water]
      type = Water97FluidProperties
    []
    [watertab]
      type = TabulatedFluidProperties
      fp = water
      save_file = false
    []
  []
[]

[Materials]
  [temperature]
    type = PorousFlowTemperature
    temperature = temperature
  []
  [ps]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  []
  [massfrac]
    type = PorousFlowMassFraction
  []
  [brine]
    type = PorousFlowBrine
    compute_enthalpy = false
    compute_internal_energy = false
    xnacl = xnacl
    phase = 0
    water_fp = watertab
  []
  [porosity]
    type = PorousFlowPorosityConst
    porosity = porosity
  []
  [permeability]
    type = PorousFlowPermeabilityConstFromVar
    perm_xx = perm
    perm_yy = perm
    perm_zz = perm
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1e5
  nl_abs_tol = 1e-12
  nl_rel_tol = 1e-06
  steady_state_detection = true
  steady_state_tolerance = 1e-12
  [TimeStepper]
    type = IterationAdaptiveDT
    dt = 1e2
  []
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  perf_graph = true
[]

modules/combined/examples/phase_field-mechanics/grain_texture.i

# This simulation predicts GB migration of 8 grains and outputs grain texture information
# Mesh adaptivity is not used so that the VectorPostprocessor's output will be uniform
# Time step adaptivity is used
# An AuxVariable is used to calculate the grain boundary locations
# Postprocessors are used to record time step

[Mesh]
  # Mesh block.  Meshes can be read in or automatically generated
  type = GeneratedMesh
  dim = 2 # Problem dimension
  nx = 100 # Number of elements in the x-direction
  ny = 100 # Number of elements in the y-direction
  xmin = 0 # minimum x-coordinate of the mesh
  xmax = 1000 # maximum x-coordinate of the mesh
  ymin = 0 # minimum y-coordinate of the mesh
  ymax = 1000 # maximum y-coordinate of the mesh
  elem_type = QUAD4 # Type of elements used in the mesh
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = 8 # Number of order parameters used
  var_name_base = gr # Base name of grains
  grain_num = 8 #Number of grains
[]

[Variables]
  # Variable block, where all variables in the simulation are declared
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    coloring_algorithm = bt
  [../]
  [./grain_tracker]
    type = GrainTracker
    threshold = 0.2
    connecting_threshold = 0.08
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  # Dependent variables
  [./bnds]
    # Variable used to visualize the grain boundaries in the simulation
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  # Kernel block, where the kernels defining the residual equations are set up.
  [./PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  [../]
[]

[AuxKernels]
  # AuxKernel block, defining the equations used to calculate the auxvars
  [./bnds_aux]
    # AuxKernel that calculates the GB term
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    execute_on = timestep_end
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    execute_on = timestep_end
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
  [../]
[]

[BCs]
  # Boundary Condition block
  [./Periodic]
    [./top_bottom]
      auto_direction = 'x y' # Makes problem periodic in the x and y directions
    [../]
  [../]
[]

[Materials]
  [./CuGrGr]
    # Material properties
    type = GBEvolution # Quantitative material properties for copper grain growth.  Dimensions are nm and ns
    block = 0 # Block ID (only one block in this problem)
    GBmob0 = 2.5e-6 #Mobility prefactor for Cu from Schonfelder1997
    GBenergy = 0.708 # GB energy in J/m^2
    Q = 0.23 #Activation energy for grain growth from Schonfelder 1997
    T = 450 # K   #Constant temperature of the simulation (for mobility calculation)
    wGB = 14 # nm    #Width of the diffuse GB
    outputs = exodus
  [../]
[]

[UserObjects]
  [./euler_angle_file]
    type = EulerAngleFileReader
    file_name = grn_8_rand_2D.tex
  [../]
[]

[VectorPostprocessors]
  [./gbInfo]
    type = GrainTextureVectorPostprocessor
    unique_grains = unique_grains
    euler_angle_provider = euler_angle_file
    sort_by = id # sort output by elem id
  [../]
[]

[Executioner]
  type = Transient # Type of executioner, here it is transient with an adaptive time step
  scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 101 ds'
  l_max_its = 30 # Max number of linear iterations
  l_tol = 1e-4 # Relative tolerance for linear solves
  nl_max_its = 40 # Max number of nonlinear iterations
  nl_abs_tol = 1e-11 # Relative tolerance for nonlinear solves
  nl_rel_tol = 1e-10 # Absolute tolerance for nonlinear solves
  start_time = 0.0
  num_steps = 50
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 25 # Initial time step.  In this simulation it changes.
    optimal_iterations = 6 # Time step will adapt to maintain this number of nonlinear iterations
  [../]
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
  exodus = true
  csv = true
  perf_graph = true
  [./console]
    type = Console
    max_rows = 20
  [../]
[]

modules/tensor_mechanics/test/tests/shell/static/beam_bending_moment_AD.i

# Test that models bending of a cantilever beam using shell elements

# A cantilever beam of length 10 m (in Y direction) and cross-section
# 1 m x 0.1 m is modeled using 4 shell elements placed along the length
# (Figure 6a from Dvorkin and Bathe, 1984). All displacements and
# X rotations are fixed on the bottom boundary. E = 2100000 and v = 0.0.
# A load of 0.5 N (in the Z direction) is applied at each node on the top
# boundary resulting in a total load of 1 N.

# The analytical solution for displacement at tip using small strain/rotations # is PL^3/3EI + PL/AG = 1.90485714 m
# The FEM solution using 4 shell elements is 1.875095 m with a relative error
# of 1.5%.

# Similarly, the analytical solution for slope at tip is PL^2/2EI = 0.285714286
# The FEM solution is 0.2857143 and the relative error is 5e-6%.

# The stress_yy for the four elements at z = -0.57735 * (t/2) (first qp below mid-surface of shell) are:
# 3031.089 Pa, 2165.064 Pa, 1299.038 Pa and 433.0127 Pa.
# Note the above values are the average stresses in each element.

# Analytically, stress_yy decreases linearly from y = 0 to y = 10 m.
# The maximum value of stress_yy at y = 0 is Mz/I = PL * 0.57735*(t/2)/I = 3464.1 Pa
# Therefore, the analytical value of stress at z = -0.57735 * (t/2) at the mid-point
# of the four elements are:
# 3031.0875 Pa, 2165.0625 Pa, 1299.0375 Pa ,433.0125 Pa

# The relative error in stress_yy is in the order of 5e-5%.

# The stress_yz at z = -0.57735 * (t/2) at all four elements from the simulation is 10 Pa.
# The analytical solution for the shear stress is: V/2/I *((t^2)/4 - z^2), where the shear force (V)
# is 1 N at any y along the length of the beam. Therefore, the analytical shear stress at
# z = -0.57735 * (t/2) is 10 Pa at any location along the length of the beam.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 4
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 10.0
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = global_stress_t_points_0
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    variable = stress_yz
    rank_two_tensor = global_stress_t_points_0
    index_i = 1
    index_j = 2
  [../]
[]

[BCs]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = 'bottom'
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = 'bottom'
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = 'bottom'
    value = 0.0
  [../]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 'bottom'
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = ConstantRate
    variable = disp_z
    boundary = 'top'
    rate = 0.5
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  nl_max_its = 2
  nl_rel_tol = 1e-10
  nl_abs_tol = 5e-4

  dt = 1
  dtmin = 1
  end_time = 1
[]

[Kernels]
  [./solid_disp_x]
    type = ADStressDivergenceShell
    block = '0'
    component = 0
    variable = disp_x
    through_thickness_order = SECOND
  [../]
  [./solid_disp_y]
    type = ADStressDivergenceShell
    block = '0'
    component = 1
    variable = disp_y
    through_thickness_order = SECOND
  [../]
  [./solid_disp_z]
    type = ADStressDivergenceShell
    block = '0'
    component = 2
    variable = disp_z
    through_thickness_order = SECOND
  [../]
  [./solid_rot_x]
    type = ADStressDivergenceShell
    block = '0'
    component = 3
    variable = rot_x
    through_thickness_order = SECOND
  [../]
  [./solid_rot_y]
    type = ADStressDivergenceShell
    block = '0'
    component = 4
    variable = rot_y
    through_thickness_order = SECOND
  [../]
[]

[Materials]
  [./elasticity]
    type = ADComputeIsotropicElasticityTensorShell
    youngs_modulus = 2100000
    poissons_ratio = 0.0
    block = 0
    through_thickness_order = SECOND
  [../]
  [./strain]
    type = ADComputeIncrementalShellStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y'
    thickness = 0.1
    through_thickness_order = SECOND
  [../]
  [./stress]
    type = ADComputeShellStress
    block = 0
    through_thickness_order = SECOND
  [../]
[]

[Postprocessors]
  [./disp_z_tip]
    type = PointValue
    point = '1.0 10.0 0.0'
    variable = disp_z
  [../]
  [./rot_x_tip]
    type = PointValue
    point = '0.0 10.0 0.0'
    variable = rot_x
  [../]
  [./stress_yy_el_0]
    type = ElementalVariableValue
    elementid = 0
    variable = stress_yy
  [../]
  [./stress_yy_el_1]
    type = ElementalVariableValue
    elementid = 1
    variable = stress_yy
  [../]
  [./stress_yy_el_2]
    type = ElementalVariableValue
    elementid = 2
    variable = stress_yy
  [../]
  [./stress_yy_el_3]
    type = ElementalVariableValue
    elementid = 3
    variable = stress_yy
  [../]
  [./stress_yz_el_0]
    type = ElementalVariableValue
    elementid = 0
    variable = stress_yz
  [../]
  [./stress_yz_el_1]
    type = ElementalVariableValue
    elementid = 1
    variable = stress_yz
  [../]
  [./stress_yz_el_2]
    type = ElementalVariableValue
    elementid = 2
    variable = stress_yz
  [../]
  [./stress_yz_el_3]
    type = ElementalVariableValue
    elementid = 3
    variable = stress_yz
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/multi/three_surface15.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 3.0E-6m in y direction and 3E-6 in z direction.
# trial stress_yy = 3.0 and stress_zz = 3
#
# A complicated return will follow, with various contraints being
# deactivated, kuhn-tucker failing, line-searching, etc, but
# the result should be
# stress_yy=1=stress_zz, and internal0=2 internal1=2

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '3.0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '3.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 4
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1'
    debug_jac_at_intnl = '1 1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface15
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/internal_volume/rz_displaced_sm.i

#
# Volume Test
#
# This test is designed to compute the volume of a space when displacements
#   are imposed.
#
# The mesh is composed of one block (1) with two elements.  The mesh is
#   such that the initial volume is 1.  One element face is displaced to
#   produce a final volume of 2.
#
#     r1
#   +----+   -
#   |    |   |
#   +----+   h    V1 = pi * h * r1^2
#   |    |   |
#   +----+   -
#
#   becomes
#
#   +----+
#   |     \
#   +------+      v2 = pi * h/2 * ( r2^2 + 1/3 * ( r2^2 + r2*r1 + r1^2 ) )
#   |      |
#   +------+
#      r2
#
#   r1 = 1
#   r2 = 1.5380168369562588
#   h  = 1/pi
#
#  Note:  Because the InternalVolume PP computes cavity volumes as positive,
#         the volumes reported are negative.
#
[GlobalParams]
  volumetric_locking_correction = false
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = meshes/rz_displaced.e
  displacements = 'disp_x disp_y'
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Functions]
  [./disp_x]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.5380168369562588'
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./volumetric_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[AuxKernels]
  [./fred]
    type = MaterialTensorAux
    quantity = VolUMetricsTRAiN
    variable = volumetric_strain
    tensor = total_strain
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./x]
    type = FunctionDirichletBC
    boundary = 3
    variable = disp_x
    function = disp_x
  [../]
[]

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
    formulation = NonlinearRZ
    increment_calculation = Eigen
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 2
    execute_on = 'initial timestep_end'
  [../]
  [./volStrain0]
    type = ElementalVariableValue
    elementid = 0
    variable = volumetric_strain
  [../]
  [./volStrain1]
    type = ElementalVariableValue
    elementid = 1
    variable = volumetric_strain
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

test/tests/multiapps/grid-sequencing/vi-fine.i

l=10
nx=80
num_steps=2

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmax = ${l}
  nx = ${nx}
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [bounds][]
[]

[Bounds]
  [bounds]
    type = BoundsAux
    variable = bounds
    bounded_variable = u
    upper = ${l}
    lower = 0
  []
[]

[ICs]
  [u]
    type = FunctionIC
    variable = u
    function = 'x'
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = Diffusion
    variable = u
  []
  [ffn]
    type = BodyForce
    variable = u
    function = 'if(x<5,-1,1)'
  []
[]

[BCs]
  [left]
    type = DirichletBC
    boundary = left
    value = 0
    variable = u
  []
  [right]
    type = DirichletBC
    boundary = right
    value = ${l}
    variable = u
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  num_steps = ${num_steps}
  solve_type = NEWTON
  dtmin = 1
  petsc_options = '-snes_vi_monitor'
  petsc_options_iname = '-snes_max_linear_solve_fail -ksp_max_it -pc_type -sub_pc_factor_levels -snes_linesearch_type -snes_type'
  petsc_options_value = '0                           30          asm      16                    basic                 vinewtonrsls'
[]

[Outputs]
  exodus = true
  [csv]
    type = CSV
    execute_on = 'nonlinear timestep_end'
  []
  [dof]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Debug]
  show_var_residual_norms = true
[]

[Postprocessors]
  active = 'upper_violations lower_violations'
  [upper_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = ${fparse 10+1e-8}
    comparator = 'greater'
  []
  [lower_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = -1e-8
    comparator = 'less'
  []
  [nls]
    type = NumNonlinearIterations
  []
  [cum_nls]
    type = CumulativeValuePostprocessor
    postprocessor = nls
  []
[]

[MultiApps]
  [./coarse]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_begin
    positions = '0 0 0'
    input_files = vi-coarse.i
  [../]
[]

[Transfers]
  [./mesh_function_begin]
    type = MultiAppMeshFunctionTransfer
    direction = from_multiapp
    multi_app = coarse
    source_variable = u
    variable = u
    execute_on = timestep_begin
  [../]
[]

modules/richards/test/tests/buckley_leverett/bl22_lumped_fu.i

# two-phase version
# super-sharp front version
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 150
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-4 1E-3 1E-2 2E-2 5E-2 6E-2 0.1 0.2'
    x = '0    1E-2 1E-1 1    5    20   40  41'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E6
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-4
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-4
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
  [./bounds_dummy]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
  [./richardsppenalty]
    type = RichardsPPenalty
    variable = pgas
    a = 1E-18
    lower_var = pwater
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[Bounds]
  [./pwater_bounds]
    type = BoundsAux
    variable = bounds_dummy
    bounded_variable = pwater
    upper = 1E7
    lower = -110000
  [../]
[]


[ICs]
  [./water_ic]
    type = FunctionIC
    variable = pwater
    function = initial_water
  [../]
  [./gas_ic]
    type = FunctionIC
    variable = pgas
    function = initial_gas
  [../]
[]

[BCs]
  [./left_w]
    type = DirichletBC
    variable = pwater
    boundary = left
    value = 1E6
  [../]
  [./left_g]
    type = DirichletBC
    variable = pgas
    boundary = left
    value = 1000
  [../]
  [./right_w]
    type = DirichletBC
    variable = pwater
    boundary = right
    value = -100000
  [../]
  [./right_g]
    type = DirichletBC
    variable = pgas
    boundary = right
    value = 0
  [../]
[]


[Functions]
  [./initial_water]
    type = ParsedFunction
    value = 1000000*(1-min(x/5,1))-if(x<5,0,100000)
  [../]
  [./initial_gas]
    type = ParsedFunction
    value = 1000
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    viscosity = '1E-3 1E-6'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'standard'

  [./bounded]
  # must use --use-petsc-dm command line argument
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type -ksp_rtol -ksp_atol'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 50 vinewtonssls 1E-20 1E-20'
  [../]

  [./standard]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10 1E-10 20 1E-10 1E-100'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 50

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = bl22_lumped_fu
  [./exodus]
    type = Exodus
    interval = 100000
    hide = 'pgas bounds_dummy'
    execute_on = 'initial final timestep_end'
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/thermal_coupling_rz.i

# Thermal eigenstrain coupling
[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Variables]
  [./disp_r]
  [../]
  [./disp_z]
  [../]
  [./temperature]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = StressDivergenceRZTensors
    variable = disp_r
    temperature = temperature
    thermal_eigenstrain_name = thermal_contribution
    use_displaced_mesh = false
    component = 0
  [../]
  [./cz_elastic]
    type = StressDivergenceRZTensors
    variable = disp_z
    temperature = temperature
    thermal_eigenstrain_name = thermal_contribution
    use_displaced_mesh = false
    component = 1
  [../]
  [./temperature]
    type = Diffusion
    variable = temperature
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 10.0
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeAxisymmetricRZSmallStrain
    eigenstrain_names = thermal_contribution
  [../]
  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    temperature = temperature
    thermal_expansion_coeff = 1.0E2
    eigenstrain_name = thermal_contribution
    stress_free_temperature = 0.0
  [../]
  [./admissible]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  solve_type = NEWTON
  end_time = 1
  dt = 1
  type = Transient
[]

modules/tensor_mechanics/test/tests/j_integral_vtest/j_int_surfbreak_ellip_crack_sym_mm_cm.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = ellip_crack_4sym_norad_mm.e
  partitioner = centroid
  centroid_partitioner_direction = z
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./resid_z]
  [../]
[]

[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.1'
    scale_factor = -689.5 #MPa
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 1001
  crack_direction_method = CrackMouth
  crack_mouth_boundary = 11
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0.0 1.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  radius_inner = '12.5 25.0 37.5'
  radius_outer = '25.0 37.5 50.0'
  intersecting_boundary = '1 2'
  symmetry_plane = 2
  position_type = angle
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 12
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 5
      function = rampConstantUp
    [../]
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 206800
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
#  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   nl_rel_tol = 1e-11
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./lin_its]
    type = NumLinearIterations
  [../]
  [./react_z]
    type = NodalSum
    variable = resid_z
    boundary = 5
  [../]
[]


[Outputs]
  execute_on = 'timestep_end'
  file_base = j_int_surfbreak_ellip_crack_sym_mm_cm_out
  exodus = true
  csv = true
[]

modules/navier_stokes/test/tests/ins/lid_driven/lid_driven.i

[GlobalParams]
  gravity = '0 0 0'
[]

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 1.0
    ymin = 0
    ymax = 1.0
    nx = 16
    ny = 16
    elem_type = QUAD9
  []
  [./corner_node]
    type = ExtraNodesetGenerator
    new_boundary = 'pinned_node'
    nodes = '0'
    input = gen
  [../]
[]

[Variables]
  [./vel_x]
    order = SECOND
    family = LAGRANGE
  [../]

  [./vel_y]
    order = SECOND
    family = LAGRANGE
  [../]

  [./T]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 1.0
    [../]
  [../]

  [./p]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  # mass
  [./mass]
    type = INSMass
    variable = p
    u = vel_x
    v = vel_y
    p = p
  [../]

  # x-momentum, time
  [./x_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_x
  [../]

  # x-momentum, space
  [./x_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_x
    u = vel_x
    v = vel_y
    p = p
    component = 0
  [../]

  # y-momentum, time
  [./y_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_y
  [../]

  # y-momentum, space
  [./y_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_y
    u = vel_x
    v = vel_y
    p = p
    component = 1
  [../]

 # temperature
 [./temperature_time]
   type = INSTemperatureTimeDerivative
   variable = T
 [../]

 [./temperature_space]
   type = INSTemperature
   variable = T
   u = vel_x
   v = vel_y
 [../]
[]

[BCs]
  [./x_no_slip]
    type = DirichletBC
    variable = vel_x
    boundary = 'bottom right left'
    value = 0.0
  [../]

  [./lid]
    type = FunctionDirichletBC
    variable = vel_x
    boundary = 'top'
    function = 'lid_function'
  [../]

  [./y_no_slip]
    type = DirichletBC
    variable = vel_y
    boundary = 'bottom right top left'
    value = 0.0
  [../]

  [./T_hot]
    type = DirichletBC
    variable = T
    boundary = 'bottom'
    value = 1
  [../]

  [./T_cold]
    type = DirichletBC
    variable = T
    boundary = 'top'
    value = 0
  [../]

  [./pressure_pin]
    type = DirichletBC
    variable = p
    boundary = 'pinned_node'
    value = 0
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'rho mu cp k'
    prop_values = '1  1  1  .01'
  [../]
[]

[Functions]
  [./lid_function]
    # We pick a function that is exactly represented in the velocity
    # space so that the Dirichlet conditions are the same regardless
    # of the mesh spacing.
    type = ParsedFunction
    value = '4*x*(1-x)'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    solve_type = 'NEWTON'
  [../]
[]

[Executioner]
  type = Transient
  # Run for 100+ timesteps to reach steady state.
  num_steps = 5
  dt = .5
  dtmin = .5
  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -sub_pc_factor_levels'
  petsc_options_value = 'asm      2               ilu          4'
  line_search = 'none'
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-13
  nl_max_its = 6
  l_tol = 1e-6
  l_max_its = 500
[]

[Outputs]
  file_base = lid_driven_out
  exodus = true
  perf_graph = true
[]

modules/porous_flow/test/tests/dirackernels/bh04.i

# fully-saturated
# production
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1 1E1 1E2 1E3'
    x = '0 1E-1 1 1E1 1E2 1E3'
  [../]
[]

[Variables]
  [./pp]
    initial_condition = 0
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1e-5
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityFLAC
    m = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    variable = pp
    SumQuantityUO = borehole_total_outflow_mass
    point_file = bh02.bh
    fluid_phase = 0
    bottom_p_or_t = -1E6
    unit_weight = '0 0 0'
    use_mobility = true
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1E3
  solve_type = NEWTON
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = bh04
  exodus = false
  csv = true
  execute_on = timestep_end
[]

test/tests/transfers/multiapp_copy_transfer/second_lagrange_to_sub/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  elem_type = QUAD9
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = sub.i
    execute_on = timestep_end
  [../]
[]

[Transfers]
  [./to_sub]
    type = MultiAppCopyTransfer
    direction = to_multiapp
    source_variable = u
    variable = u
    multi_app = sub
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/cosserat02.i

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  active = 'cx_elastic cy_elastic cz_elastic x_couple y_couple z_couple x_moment y_moment z_moment'
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    displacements = 'disp_x disp_y disp_z'
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    component = 1
    displacements = 'wc_x wc_y wc_z'
    base_name = couple
  [../]
  [./z_couple]
    type = StressDivergenceTensors
    variable = wc_z
    component = 2
    displacements = 'wc_x wc_y wc_z'
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
  [./z_moment]
    type = MomentBalancing
    variable = wc_z
    component = 2
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeCosseratElasticityTensor
    B_ijkl = '1.3 0.98 1.4'
    fill_method_bending = 'general_isotropic'
    E_ijkl = '1 2 1.333'
    fill_method = 'general_isotropic'
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/auxkernels/solution_aux/solution_aux_exodus.i

[Mesh]
  file = cubesource.e
  # The SolutionUserObject uses the copy_nodal_solution() capability
  # of the Exodus reader, and therefore won't work if the initial mesh
  # has been renumbered (it will be reunumbered if you are running with
  # DistributedMesh in parallel).  Hence, we restrict this test to run with
  # ReplicatedMesh only.
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
  [./en]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./nn]
    type = SolutionAux
    solution = soln
    variable = nn
    scale_factor = 2.0
  [../]
  [./en]
    type = SolutionAux
    solution = soln
    variable = en
    scale_factor = 2.0
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = cubesource.e
    system_variables = source_nodal
    timestep = 2
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]

[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 50
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_elastic/incremental_small_elastic.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_x]
    scaling = 1e-10
  [../]
  [./disp_y]
    scaling = 1e-10
  [../]
  [./disp_z]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_x]
    type = ADStressDivergenceTensors
    component = 0
    variable = disp_x
  [../]
  [./stress_y]
    type = ADStressDivergenceTensors
    component = 1
    variable = disp_y
  [../]
  [./stress_z]
    type = ADStressDivergenceTensors
    component = 2
    variable = disp_z
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeIncrementalSmallStrain
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/SoretDiffusion/direct.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmax = 1000
  nx = 25
[]

[GlobalParams]
  polynomial_order = 8
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 175.0
    y1 = 0.0
    radius = 100
    invalue = 1.0
    outvalue = 0.01
    int_width = 100.0
    variable = c
  [../]
[]

[AuxVariables]
  [./T]
  [../]
[]

[Kernels]
  [./c_int]
    type = CHInterface
    variable = c
    kappa_name = kappa
    mob_name = M
  [../]
  [./c_bulk]
    type = CahnHilliard
    variable = c
    mob_name = M
    f_name = F
  [../]
  [./c_soret]
    type = SoretDiffusion
    variable = c
    T = T
    diff_name = D
    Q_name = Qstar
  [../]
  [./c_dot]
    type = TimeDerivative
    variable = c
  [../]
[]

[AuxKernels]
  [./Temp]
    type = FunctionAux
    variable = T
    function = 1000.0+0.025*x
  [../]
[]

[Materials]
  [./Copper]
    type = PFParamsPolyFreeEnergy
    block = 0
    c = c
    T = T # K
    int_width = 80.0
    length_scale = 1.0e-9
    time_scale = 1.0e-6
    D0 = 3.1e-5 # m^2/s, from Brown1980
    Em = 0.71 # in eV, from Balluffi1978 Table 2
    Ef = 1.28 # in eV, from Balluffi1978 Table 2
    surface_energy = 0.708 # Total guess
  [../]
  [./free_energy]
    type = PolynomialFreeEnergy
    block = 0
    c = c
    outputs = exodus
    derivative_order = 3
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'

  l_max_its = 10
  l_tol = 1.0e-4
  nl_max_its = 25
  nl_rel_tol = 1.0e-9

  start_time = 0.0
  num_steps = 60
  dt = 1
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/phase_field_crystal/PFCTrad/PFCTrad_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  xmax = 8
  ymax = 8
[]

[Variables]
  [./n]
    [./InitialCondition]
      type = RandomIC
      min = -1
      max = 4
    [../]
  [../]
  [./u]
    scaling = 1e2
  [../]
  [./v]
    scaling = 1e1
  [../]
[]

[Kernels]
  [./ndot]
    type = TimeDerivative
    variable = n
  [../]
  [./n_bulk]
    type = CHBulkPFCTrad
    variable = n
  [../]
  [./u_term]
    type = MatDiffusion
    variable = n
    v = u
    diffusivity = C2
  [../]
  [./v_term]
    type = MatDiffusion
    variable = n
    v = v
    diffusivity = C4
  [../]
  [./u_rctn]
    type = Reaction
    variable = u
  [../]
  [./u_gradn]
    type = LaplacianSplit
    variable = u
    c = n
  [../]
  [./v_rctn]
    type = Reaction
    variable = v
  [../]
  [./v_gradu]
    type = LaplacianSplit
    variable = v
    c = u
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./PFCTrad]
    type = PFCTradMaterial
    order = FOURTH
  [../]
[]

[Preconditioning]
  active = 'SMP'
  [./SMP]
    type = SMP
    full = true
    off_diag_row    = 'u n n v'
    off_diag_column = 'n u v u'
  [../]
  [./FDP]
    type = FDP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  # petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  # petsc_options_value = 'hypre boomeramg 101'
  # petsc_options_iname = -pc_type
  # petsc_options_value = lu
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         101   preonly   lu      5'

  l_max_its = 100
  l_tol = 1e-04
  nl_rel_tol = 1e-09
  nl_abs_tol = 1e-11

  num_steps = 2
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform_cosserat1.i

# Plastic deformation.  Layered Cosserat with parameters:
# Young = 1.0
# Poisson = 0.2
# layer_thickness = 0.1
# joint_normal_stiffness = 0.25
# joint_shear_stiffness = 0.2
# These give the following nonzero components of the elasticity tensor:
# E_0000 = E_1111 = 1.043195
# E_0011 = E_1100 = 0.260799
# E_2222 = 0.02445
# E_0022 = E_1122 = E_2200 = E_2211 = 0.006112
# G = E_0101 = E_0110 = E_1001 = E_1010 = 0.416667
# Gt = E_0202 = E_0220 = E_2002 = E_1212 = E_1221 = E_2112 = 0.019084
# E_2020 = E_2121 = 0.217875
# They give the following nonzero components of the bending rigidity tensor:
# D = 8.68056E-5
# B_0101 = B_1010 = 7.92021E-4
# B_0110 = B_1001 = -1.584E-4
#
# Applying the following deformation to the zmax surface of a unit cube:
# disp_x = 8*t
# disp_y = 6*t
# disp_z = t
# omega_x = omega_y = omega_z = 0
# yields the following strains:
# strain_xz = 8*t
# strain_yz = 6*t
# strain_zz = t
# and all other components, and the curvature, are zero.
# The nonzero components of stress are therefore:
# stress_xx = stress_yy = 0.006112*t
# stress_xz = stress_zx = 0.152671*t
# stress_yz = stress_zy = 0.114504*t
# stress_zz = 0.0244499*t
# The moment stress is zero.
# So q = 0.19084*t and p = 0.0244*t.
#
# With large cohesion, but tensile strength = 0.0244499, the
# system is elastic up to t=1.  After that time
# stress_zz = 0.0244499 (for t>=1)
# and
# stress_xx = stress_yy = 0.006112 (for t>=1), since the
# elastic trial increment is exactly canelled by the Poisson's
# contribution from the return to the yield surface.
# The plastic strains are zero for t<=1, but for larger times:
# plastic_strain_zz = (t - 1)  (for t>=1)
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 8*t
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 6*t
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = t
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yx
    index_i = 1
    index_j = 0
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zx
    index_i = 2
    index_j = 0
  [../]
  [./strainp_zy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zy
    index_i = 2
    index_j = 1
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
  [./straint_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xx
    index_i = 0
    index_j = 0
  [../]
  [./straint_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xy
    index_i = 0
    index_j = 1
  [../]
  [./straint_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xz
    index_i = 0
    index_j = 2
  [../]
  [./straint_yx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yx
    index_i = 1
    index_j = 0
  [../]
  [./straint_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yy
    index_i = 1
    index_j = 1
  [../]
  [./straint_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yz
    index_i = 1
    index_j = 2
  [../]
  [./straint_zx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zx
    index_i = 2
    index_j = 0
  [../]
  [./straint_zy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zy
    index_i = 2
    index_j = 1
  [../]
  [./straint_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zz
    index_i = 2
    index_j = 2
  [../]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yx]
    type = PointValue
    point = '0 0 0'
    variable = stress_yx
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zx]
    type = PointValue
    point = '0 0 0'
    variable = stress_zx
  [../]
  [./s_zy]
    type = PointValue
    point = '0 0 0'
    variable = stress_zy
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./c_s_xx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xx
  [../]
  [./c_s_xy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xy
  [../]
  [./c_s_xz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xz
  [../]
  [./c_s_yx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yx
  [../]
  [./c_s_yy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yy
  [../]
  [./c_s_yz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yz
  [../]
  [./c_s_zx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zx
  [../]
  [./c_s_zy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zy
  [../]
  [./c_s_zz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xz
  [../]
  [./strainp_yx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yx
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yz
  [../]
  [./strainp_zx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zx
  [../]
  [./strainp_zy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zy
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = straint_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = straint_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = straint_xz
  [../]
  [./straint_yx]
    type = PointValue
    point = '0 0 0'
    variable = straint_yx
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = straint_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = straint_yz
  [../]
  [./straint_zx]
    type = PointValue
    point = '0 0 0'
    variable = straint_zx
  [../]
  [./straint_zy]
    type = PointValue
    point = '0 0 0'
    variable = straint_zy
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = straint_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 30
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 0.024449878
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 40
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1.0
    poisson = 0.2
    layer_thickness = 0.1
    joint_normal_stiffness = 0.25
    joint_shear_stiffness = 0.2
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
  [../]
  [./admissible]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneCosseratStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  nl_abs_tol = 1E-14
  end_time = 3
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform_cosserat1
  csv = true
[]

modules/porous_flow/test/tests/poro_elasticity/terzaghi_fully_saturated_volume.i

# Terzaghi's problem of consolodation of a drained medium
# The FullySaturated Kernels are used, with multiply_by_density = false
# so that this becomes a linear problem with constant Biot Modulus
# Also, since the FullySaturated Kernels are used, we have to
# use consistent_with_displaced_mesh = false in the calculation of volumetric strain
#
# A saturated soil sample sits in a bath of water.
# It is constrained on its sides, and bottom.
# Its sides and bottom are also impermeable.
# Initially it is unstressed.
# A normal stress, q, is applied to the soil's top.
# The soil then slowly compresses as water is squeezed
# out from the sample from its top (the top BC for
# the porepressure is porepressure = 0).
#
# See, for example.  Section 2.2 of the online manuscript
# Arnold Verruijt "Theory and Problems of Poroelasticity" Delft University of Technology 2013
# but note that the "sigma" in that paper is the negative
# of the stress in TensorMechanics
#
# Here are the problem's parameters, and their values:
# Soil height.  h = 10
# Soil's Lame lambda.  la = 2
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = 3
# Soil bulk modulus.  K = la + 2*mu/3 = 4
# Soil confined compressibility.  m = 1/(K + 4mu/3) = 0.125
# Soil bulk compliance.  1/K = 0.25
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Soil initial storativity, which is the reciprocal of the initial Biot modulus.  S = phi0/Kf + (alpha - phi0)(1 - alpha)/K = 0.0625
# Consolidation coefficient.  c = k/(S + alpha^2 m) = 13.95348837
# Normal stress on top.  q = 1
# Initial porepressure, resulting from instantaneous application of q, assuming corresponding instantaneous increase of porepressure (Note that this is calculated by MOOSE: we only need it for the analytical solution).  p0 = alpha*m*q/(S + alpha^2 m) = 0.69767442
# Initial vertical displacement (down is positive), resulting from instantaneous application of q (Note this is calculated by MOOSE: we only need it for the analytical solution).  uz0 = q*m*h*S/(S + alpha^2 m)
# Final vertical displacement (down in positive) (Note this is calculated by MOOSE: we only need it for the analytical solution).  uzinf = q*m*h
#
# The solution for porepressure is
# P = 4*p0/\pi \sum_{k=1}^{\infty} \frac{(-1)^{k-1}}{2k-1} \cos ((2k-1)\pi z/(2h)) \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))
# This series converges very slowly for ct/h^2 small, so in that domain
# P = p0 erf( (1-(z/h))/(2 \sqrt(ct/h^2)) )
#
# The degree of consolidation is defined as
# U = (uz - uz0)/(uzinf - uz0)
# where uz0 and uzinf are defined above, and
# uz = the vertical displacement of the top (down is positive)
# U = 1 - (8/\pi^2)\sum_{k=1}^{\infty} \frac{1}{(2k-1)^2} \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = 0
  zmax = 10
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./basefixed]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  [../]
  [./topdrained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = front
  [../]
  [./topload]
    type = NeumannBC
    variable = disp_z
    value = -1
    boundary = front
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    component = 2
    variable = disp_z
  [../]
  [./mass0]
    type = PorousFlowFullySaturatedMassTimeDerivative
    coupling_type = HydroMechanical
    biot_coefficient = 0.6
    multiply_by_density = false
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowFullySaturatedDarcyBase
    multiply_by_density = false
    variable = porepressure
    gravity = '0 0 0'
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 8
      density0 = 1
      thermal_expansion = 0
      viscosity = 0.96
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '2 3'
    # bulk modulus is lambda + 2*mu/3 = 2 + 2*3/3 = 4
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure_qp]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
    consistent_with_displaced_mesh = false
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # only the initial value of this is used
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.6
    fluid_bulk_modulus = 8
    solid_bulk_compliance = 0.25
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p1]
    type = PointValue
    outputs = csv
    point = '0 0 1'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p2]
    type = PointValue
    outputs = csv
    point = '0 0 2'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p3]
    type = PointValue
    outputs = csv
    point = '0 0 3'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p4]
    type = PointValue
    outputs = csv
    point = '0 0 4'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p5]
    type = PointValue
    outputs = csv
    point = '0 0 5'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p6]
    type = PointValue
    outputs = csv
    point = '0 0 6'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p7]
    type = PointValue
    outputs = csv
    point = '0 0 7'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p8]
    type = PointValue
    outputs = csv
    point = '0 0 8'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p9]
    type = PointValue
    outputs = csv
    point = '0 0 9'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p99]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = disp_z
    use_displaced_mesh = false
  [../]
  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.5*t<0.1,0.5*t,0.1)
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.0001
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = terzaghi_fully_saturated_volume
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/contact_adaptivity/sm/contact_initial_adaptivity_sm.i

# This is a test of the usage of initial adaptivity with contact.
# It ensures that contact is enforced on the new nodes that are
# created due to refinement on the slave side of the interface.
[GlobalParams]
  volumetric_locking_correction = false
[]

[Mesh]
  file = 2blocks.e
  displacements = 'disp_x disp_y'
  patch_size = 80
  parallel_type = replicated
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./negramp]
    type = ParsedFunction
    value = -t/10
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = negramp
  [../]
  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = '1 2'
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    displacements = 'disp_x disp_y'
    master = 2
    model = frictionless
    penalty = 1e+6
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

[Adaptivity]
  steps = 0
  marker = box
  max_h_level = 2
  initial_steps = 2
  [./Markers]
    [./box]
      type = BoxMarker
      bottom_left = '0.5 -2.0 0.0'
      top_right = '0.75 2.0 0.0'
      inside = refine
      outside = do_nothing
    [../]
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.2
  end_time = 1.0
  l_tol = 1e-6
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
  console = true
[]

modules/richards/test/tests/gravity_head_1/gh09.i

# unsaturated = false
# gravity = false
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGnone
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh09
  exodus = true
[]

modules/combined/test/tests/thermo_mech/thermo_mech.i

#Run with 4 procs
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  temperature = temp
  volumetric_locking_correction = true
[]

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]

  [./temp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]

  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./bottom_temp]
    type = DirichletBC
    variable = temp
    boundary = 1
    value = 10.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1.0
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeSmallStrain
    eigenstrain_names = eigenstrain
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 0.0
    thermal_expansion_coeff = 1e-5
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./heat]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-14
  l_tol = 1e-3

  l_max_its = 100

  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto11.i

# checking jacobian for 3-plane linear plasticity using SimpleTester.
#
# This is like the test multi/eight_surface14.i
# Plasticity models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
# SimpleTester3 with a = 0 and b = 1 and strength = 1.1
# SimpleTester4 with a = 1 and b = 0 and strength = 1.1
# SimpleTester5 with a = 1 and b = 1 and strength = 3.1
# SimpleTester6 with a = 1 and b = 2 and strength = 3.1
# SimpleTester7 with a = 2 and b = 1 and strength = 3.1
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 2.1E-6m in y direction and 3E-6 in z direction.
# trial stress_yy = 2.1 and stress_zz = 3.0
#
# This is similar to three_surface14.i, and a description is found there.
# The result should be stress_zz=1=stress_yy, with internal0=2
# and internal1=1.1




[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple3]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple4]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple5]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple6]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 2
    strength = 3.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple7]
    type = TensorMechanicsPlasticSimpleTester
    a = 2
    b = 1
    strength = 3.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 2.1 0  0 0 3.0'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2 simple3 simple4 simple5 simple6 simple7'
    deactivation_scheme = optimized_to_safe
    max_NR_iterations = 4
    tangent_operator = linear
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/phase_field/test/tests/grain_tracker_test/distributed_poly_ic.i

[Mesh]
  # Mesh block.  Meshes can be read in or automatically generated
  type = GeneratedMesh
  uniform_refine = 1 # Initial uniform refinement of the mesh
  dim = 2 # Problem dimension
  nx = 12 # Number of elements in the x-direction
  ny = 12 # Number of elements in the y-direction
  xmax = 1000 # maximum x-coordinate of the mesh
  ymax = 1000 # maximum y-coordinate of the mesh
  elem_type = QUAD4 # Type of elements used in the mesh
  parallel_type = distributed
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = '8' # Number of order parameters used
  var_name_base = 'gr' # Base name of grains
  order = 'CONSTANT'
  family = 'MONOMIAL'
[]

[Variables]
  # Variable block, where all variables in the simulation are declared
  [PolycrystalVariables]
    order = FIRST
    family = LAGRANGE
  []
[]

[UserObjects]
  [voronoi]
    type = PolycrystalVoronoi
    grain_num = 12 # Number of grains
    coloring_algorithm = jp
    rand_seed = 10
  []
  [grain_tracker]
    type = GrainTracker
    threshold = 0.2
    verbosity_level = 1
    connecting_threshold = 0.08
    flood_entity_type = ELEMENTAL
    compute_halo_maps = true # For displaying HALO fields
    execute_on = 'initial timestep_end'
    polycrystal_ic_uo = voronoi
  []
[]

[ICs]
  [PolycrystalICs]
    [PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    []
  []
[]

[AuxVariables]
  # Dependent variables
  [bnds]
    # Variable used to visualize the grain boundaries in the simulation
    order = FIRST
    family = LAGRANGE
  []
  [unique_grains]
  []
  [var_indices]
  []
  [ghost_regions]
  []
  [halos]
  []
  [halo0]
  []
  [halo1]
  []
  [halo2]
  []
  [halo3]
  []
  [halo4]
  []
  [halo5]
  []
  [halo6]
  []
  [halo7]
  []
  [centroids]
    order = CONSTANT
    family = MONOMIAL
  []
  [proc_id]
  []
  [voronoi_id]
  []
  [evaluable_elems]
  []
[]

[Kernels]
  # Kernel block, where the kernels defining the residual equations are set up.
  [PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  []
[]

[AuxKernels]
  # AuxKernel block, defining the equations used to calculate the auxvars
  [bnds_aux]
    # AuxKernel that calculates the GB term
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  []
  [unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
    execute_on = 'initial timestep_end'
  []
  [var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
    execute_on = 'initial timestep_end'
  []
  [ghosted_entities]
    type = FeatureFloodCountAux
    variable = ghost_regions
    flood_counter = grain_tracker
    field_display = GHOSTED_ENTITIES
    execute_on = 'initial timestep_end'
  []
  [halos]
    type = FeatureFloodCountAux
    variable = halos
    flood_counter = grain_tracker
    field_display = HALOS
    execute_on = 'initial timestep_end'
  []
  [halo0]
    type = FeatureFloodCountAux
    variable = halo0
    map_index = 0
    field_display = HALOS
    flood_counter = grain_tracker
  []
  [halo1]
    type = FeatureFloodCountAux
    variable = halo1
    map_index = 1
    field_display = HALOS
    flood_counter = grain_tracker
  []
  [halo2]
    type = FeatureFloodCountAux
    variable = halo2
    map_index = 2
    field_display = HALOS
    flood_counter = grain_tracker
  []
  [halo3]
    type = FeatureFloodCountAux
    variable = halo3
    map_index = 3
    field_display = HALOS
    flood_counter = grain_tracker
  []
  [halo4]
    type = FeatureFloodCountAux
    variable = halo4
    map_index = 4
    field_display = HALOS
    flood_counter = grain_tracker
  []
  [halo5]
    type = FeatureFloodCountAux
    variable = halo5
    map_index = 5
    field_display = HALOS
    flood_counter = grain_tracker
  []
  [halo6]
    type = FeatureFloodCountAux
    variable = halo6
    map_index = 6
    field_display = HALOS
    flood_counter = grain_tracker
  []
  [halo7]
    type = FeatureFloodCountAux
    variable = halo7
    map_index = 7
    field_display = HALOS
    flood_counter = grain_tracker
  []
  [centroids]
    type = FeatureFloodCountAux
    variable = centroids
    execute_on = 'timestep_end'
    field_display = CENTROID
    flood_counter = grain_tracker
  []
  [proc_id]
    type = ProcessorIDAux
    variable = proc_id
    execute_on = 'initial'
  []
  [voronoi_id]
    type = VoronoiICAux
    variable = voronoi_id
    execute_on = 'initial'
    polycrystal_ic_uo = voronoi
  []
[]

[Materials]
  [CuGrGr]
    # Material properties
    type = GBEvolution
    T = '450' # Constant temperature of the simulation (for mobility calculation)
    wGB = 125 # Width of the diffuse GB
    GBmob0 = 2.5e-6 # m^4(Js) for copper from Schoenfelder1997
    Q = 0.23 # eV for copper from Schoenfelder1997
    GBenergy = 0.708 # J/m^2 from Schoenfelder1997
  []
[]

[Postprocessors]
  # Scalar postprocessors
  [dt]
    # Outputs the current time step
    type = TimestepSize
  []
[]

[Executioner]
  # Uses newton iteration to solve the problem.
  type = Transient # Type of executioner, here it is transient with an adaptive time step
  scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 101 ds'
  l_max_its = 30 # Max number of linear iterations
  l_tol = 1e-4 # Relative tolerance for linear solves
  nl_max_its = 40 # Max number of nonlinear iterations
  nl_rel_tol = 1e-10 # Absolute tolerance for nonlienar solves
  start_time = 0.0
  num_steps = 2
  dt = 300
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/chemistry/precipitation.i

# The precipitation reaction
#
# a <==> mineral
#
# produces "mineral".  Using mineral_density = fluid_density, theta = 1 = eta, the DE is
#
# a' = -(mineral / porosity)' = rate * surf_area * molar_vol (1 - (1 / eqm_const) * (act_coeff * a)^stoi)
#
# The following parameters are used
#
# T_ref = 0.5 K
# T = 1 K
# activation_energy = 3 J/mol
# gas_constant = 6 J/(mol K)
# kinetic_rate_at_ref_T = 0.60653 mol/(m^2 s)
# These give rate = 0.60653 * exp(1/2) = 1 mol/(m^2 s)
#
# surf_area = 0.5 m^2/L
# molar_volume = 2 L/mol
# These give rate * surf_area * molar_vol = 1 s^-1
#
# equilibrium_constant = 0.5 (dimensionless)
# primary_activity_coefficient = 2 (dimensionless)
# stoichiometry = 1 (dimensionless)
# This means that 1 - (1 / eqm_const) * (act_coeff * a)^stoi = 1 - 4 a, which is negative for a > 0.25, ie precipitation for a(t=0) > 0.25
#
# The solution of the DE is
# a = eqm_const / act_coeff + (a(t=0) - eqm_const / act_coeff) exp(-rate * surf_area * molar_vol * act_coeff * t / eqm_const)
#   = 0.25 + (a(t=0) - 0.25) exp(-4 * t)
# c = c(t=0) - (a - a(t=0)) * porosity
#
# This test checks that (a + c / porosity) is time-independent, and that a follows the above solution
#
# Aside:
#    The exponential curve is not followed exactly because moose actually solves
#    (a - a_old)/dt = rate * surf_area * molar_vol (1 - (1 / eqm_const) * (act_coeff * a)^stoi)
#    which does not give an exponential exactly, except in the limit dt->0
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.9
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
  [./ini_mineral_conc]
    initial_condition = 0.2
  [../]
  [./k]
    initial_condition = 0.5
  [../]
  [./mineral]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./should_be_static]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./mineral]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = mineral
  [../]
  [./should_be_static]
    type = ParsedAux
    args = 'mineral a'
    function = 'a + mineral / 0.1'
    variable = should_be_static
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./mass_a]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = a
  [../]
  [./pre_dis]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1000
    stoichiometry = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = a
    number_fluid_phases = 1
    number_fluid_components = 2
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9 # huge, so mimic chemical_reactions
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 1
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./mass_frac]
    type = PorousFlowMassFraction
    mass_fraction_vars = a
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = a
    num_reactions = 1
    equilibrium_constants = k
    primary_activity_coefficients = 2
    reactions = 1
    specific_reactive_surface_area = 0.5
    kinetic_rate_constant = 0.6065306597126334
    activation_energy = 3
    molar_volume = 2
    gas_constant = 6
    reference_temperature = 0.5
  [../]
  [./mineral_conc]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_mineral_conc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1E-10
  dt = 0.01
  end_time = 1
[]

[Postprocessors]
  [./a]
    type = PointValue
    point = '0 0 0'
    variable = a
  [../]
  [./should_be_static]
    type = PointValue
    point = '0 0 0'
    variable = should_be_static
  [../]
[]
[Outputs]
  interval = 10
  csv = true
  perf_graph = true
[]

modules/stochastic_tools/test/tests/transfers/errors/master_multiapp_type_error.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform'
    execute_on = 'initial timestep_end'
  []
[]

[MultiApps]
  [sub]
    type = TransientMultiApp
    input_files = sub.i
    positions = '0 0 0'
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochasticsub'
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

modules/solid_mechanics/test/tests/combined_creep_plasticity/plasticity_only_combined_class_sm2.i

#
# Test considers only linear strain hardening by setting the power-law
#   creep coefficient to zero.
#
# The mesh is a 1x1x1 cube pulled in the y direction.  Young's
#    modulus is 2.4e5, and the yield stress is 2.4e2.  This gives
#    a strain at yield of 0.001.  This strain is reached after 5
#    solves.  As the deformation continues, the stress follows the
#    hardening constant slope (1206).
#

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t/5.0
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]

  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]

  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]

  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]

 []


[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./driver]
    type = SolidModel
    block = 0
    youngs_modulus = 2.4e5
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    constitutive_model = lsh
  [../]
  [./lsh]
    type = IsotropicPlasticity
    block = 0
    yield_stress = 2.4e2
    hardening_constant = 1206.
    relative_tolerance = 1e-8
    absolute_tolerance = 1e-12
  [../]
[]

[Executioner]
  type = Transient

  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
  start_time = 0.0
  end_time = 0.02
  dt = 1e-3
[]

[Outputs]
  file_base = plasticity_only_combined_class_sm_out
  exodus = true
[]

modules/phase_field/test/tests/phase_field_crystal/PFC_IC/PFC_IC_FCC_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 100
  xmax = 10
  ymax = 10
[]

[Variables]
  [./rho]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = rho
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  exodus = true
[]

[ICs]
  [./rho_IC]
    y2 = 8.75
    lc = 5
    y1 = 1.25
    x2 = 8.75
    crystal_structure = FCC
    variable = rho
    x1 = 1.25
    type = PFCFreezingIC
    min = .3
    max = .7
  [../]
[]

test/tests/transfers/multiapp_copy_transfer/aux_to_aux/to_sub.i

[Problem]
  solve = false
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[MultiApps/sub]
  type = TransientMultiApp
  input_files = sub.i
[]

[Transfers/from_sub]
  type = MultiAppCopyTransfer
  direction = to_multiapp
  multi_app = sub
  source_variable = x
  variable = aux
[]

[AuxVariables/x]
  initial_condition = 1949
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  execute_on = 'FINAL'
  exodus = true
[]

modules/phase_field/test/tests/actions/gpm_kernel.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 300
[]

[GlobalParams]
  op_num = 1
  var_name_base = eta
[]

[Variables]
  [./w]
  [../]
  [./phi]
  [../]
  [./eta0]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
[]

[ICs]
  [./IC_w]
    type = BoundingBoxIC
    variable = w
    x1 = 150
    x2 = 300
    y1 = 0
    y2 = 0
    inside = 0.1
    outside = 0
  [../]
  [./IC_phi]
    type = BoundingBoxIC
    variable = phi
    x1 = 0
    x2 = 150
    y1 = 0
    y2 = 0
    inside = 1
    outside = 0
  [../]
  [./IC_eta0]
    type = BoundingBoxIC
    variable = eta0
    x1 = 150
    x2 = 300
    y1 = 0
    y2 = 0
    inside = 1
    outside = 0
  [../]
[]

[AuxKernels]
  [./bnds_aux]
    type = BndsCalcAux
    variable = bnds
  [../]
[]

[Modules]
  [./PhaseField]
    [./GrandPotential]
      switching_function_names = 'hb hm'

      chemical_potentials = 'w'
      anisotropic = 'false'
      mobilities = 'chiD'
      susceptibilities = 'chi'
      free_energies_w = 'rhob rhom'

      gamma_gr = gamma
      mobility_name_gr = L
      kappa_gr = kappa
      free_energies_gr = 'omegab omegam'

      additional_ops = 'phi'
      gamma_grxop = gamma
      mobility_name_op = L_phi
      kappa_op = kappa
      free_energies_op = 'omegab omegam'
    [../]
  [../]
[]

[Materials]
  #REFERENCES
  [./constants]
    type = GenericConstantMaterial
    prop_names =  'Va      cb_eq cm_eq kb   km  mu  gamma L      L_phi  kappa  kB'
    prop_values = '0.04092 1.0   1e-5  1400 140 1.5 1.5   5.3e+3 2.3e+4 295.85 8.6173324e-5'
  [../]
  #SWITCHING FUNCTIONS
  [./switchb]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = hb
    all_etas = 'phi eta0'
    phase_etas = 'phi'
  [../]
  [./switchm]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = hm
    all_etas = 'phi eta0'
    phase_etas = 'eta0'
  [../]
  [./omegab]
    type = DerivativeParsedMaterial
    f_name = omegab
    args = 'w phi'
    material_property_names = 'Va kb cb_eq'
    function = '-0.5*w^2/Va^2/kb - w/Va*cb_eq'
    derivative_order = 2
  [../]
  [./omegam]
    type = DerivativeParsedMaterial
    f_name = omegam
    args = 'w eta0'
    material_property_names = 'Va km cm_eq'
    function = '-0.5*w^2/Va^2/km - w/Va*cm_eq'
    derivative_order = 2
  [../]
  [./chi]
    type = DerivativeParsedMaterial
    f_name = chi
    args = 'w'
    material_property_names = 'Va hb hm kb km'
    function = '(hm/km + hb/kb)/Va^2'
    derivative_order = 2
  [../]
  #DENSITIES/CONCENTRATION
  [./rhob]
    type = DerivativeParsedMaterial
    f_name = rhob
    args = 'w'
    material_property_names = 'Va kb cb_eq'
    function = 'w/Va^2/kb + cb_eq/Va'
    derivative_order = 1
  [../]
  [./rhom]
    type = DerivativeParsedMaterial
    f_name = rhom
    args = 'w eta0'
    material_property_names = 'Va km cm_eq(eta0)'
    function = 'w/Va^2/km + cm_eq/Va'
    derivative_order = 1
  [../]
  [./concentration]
    type = ParsedMaterial
    f_name = c
    material_property_names = 'rhom hm rhob hb Va'
    function = 'Va*(hm*rhom + hb*rhob)'
    outputs = exodus
  [../]
  [./mobility]
    type = DerivativeParsedMaterial
    material_property_names = 'chi kB'
    constant_names = 'T Em D0'
    constant_expressions = '1400 2.4 1.25e2'
    f_name = chiD
    function = 'chi*D0*exp(-Em/kB/T)'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart -sub_ksp_type'
  petsc_options_value = ' asm      lu           1               31                 preonly'
  nl_max_its = 20
  l_max_its = 30
  l_tol = 1e-4
  nl_rel_tol = 1e-7
  nl_abs_tol = 1e-7
  start_time = 0
  dt = 2e-5
  num_steps = 3
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/element_integral_var_pps/pps_old_value.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 4
  ny = 4
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1
  [../]
[]

[Functions]
  [./force_fn]
    type = ParsedFunction
    value = '1'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = 't'
  [../]
[]

[Kernels]
  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]
[]

[BCs]
  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./a]
    type = ElementIntegralVariablePostprocessor
    variable = u
    execute_on = 'initial timestep_end'
  [../]

  [./total_a]
    type = TotalVariableValue
    value = a
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 1
  start_time = 1
  end_time = 3
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/richards/test/tests/newton_cooling/nc_lumped_01.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1000
  ny = 1
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGnone
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 1.0E6
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]




[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = 2E6
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 2E6
  [../]
  [./newton]
    type = RichardsPiecewiseLinearSink
    variable = pressure
    boundary = right
    pressures = '0 100000 200000 300000 400000 500000 600000 700000 800000 900000 1000000 1100000 1200000 1300000 1400000 1500000 1600000 1700000 1800000 1900000 2000000'
    bare_fluxes = '0. 5.6677197748570516e-6 0.000011931518841831313 0.00001885408740732065 0.000026504708864284114 0.000034959953203725676 0.000044304443352900224 0.00005463170211001232 0.00006604508815181467 0.00007865883048198513 0.00009259917167338928 0.00010800563134618119 0.00012503240252705603 0.00014384989486488752 0.00016464644014777016 0.00018763017719085535 0.0002130311349595711 0.00024110353477682344 0.00027212833465544285 0.00030641604122040985 0.00034430981736352295'
    use_mobility = false
    use_relperm = false
  [../]
[]

[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsLumpedMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]



[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'andy'
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-15 10000'
  [../]


[]

[Executioner]
  type = Transient
  end_time = 1E8
  dt = 1E6
[]

[Outputs]
  file_base = nc_lumped_01
  interval = 100000
  execute_on = 'initial final'
  exodus = true
[]

test/tests/restart/restart_diffusion/restart_diffusion_test_transient.i

[Mesh]
  file = steady_out.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_from_file_var = u
    initial_from_file_timestep = 2
  [../]
[]

[Kernels]
  active = 'bodyforce ie'

  [./bodyforce]
    type = BodyForce
    variable = u
    value = 10.0
  [../]

  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 10
  dt = .1
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/xfem/test/tests/solid_mechanics_basic/sm/edge_crack_3d_propagation.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[XFEM]
  geometric_cut_userobjects = 'cut_mesh'
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.2
  elem_type = HEX8
[]

[UserObjects]
  [./cut_mesh]
    type = MeshCut3DUserObject
    mesh_file = mesh_edge_crack.xda
    size_control = 0.1
    n_step_growth = 1
    function_x = growth_func_x
    function_y = growth_func_y
    function_z = growth_func_z
  [../]
[]

[Functions]
  [./growth_func_x]
    type = ParsedFunction
    value = 1
  [../]
  [./growth_func_y]
    type = ParsedFunction
    value = 0
  [../]
  [./growth_func_z]
    type = ParsedFunction
    value = 0
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  []

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./top_trac_y]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_y]
    type = FunctionNeumannBC
    boundary = top
    variable = disp_y
    function = top_trac_y
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = bottom
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 207000
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 5.0
  max_xfem_update = 1
[]

[Outputs]
  file_base = edge_crack_3d_propagation_out
  execute_on = 'timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/functions/parsed/mms_transient_coupled.i

###########################################################
# This is a simple test of the Function System. This
# test uses forcing terms produced from analytical
# functions of space and time to verify a solution
# using MMS.
#
# @Requirement F6.20
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0.0
  xmax = 1.0
  nx = 10
  ymin = 0.0
  ymax = 1.0
  ny = 10
  uniform_refine = 2
  elem_type = QUAD4
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Functions]
  [./v_left_bc]
    # Left-side boundary condition for v equation, v(0,y,t) = u(0.5,y,t). This is accomplished using a PointValue postprocessor, which is what this input file was designed to test.
    type = ParsedFunction
    value = a
    vals = u_midpoint
    vars = a
  [../]
  [./u_mms_func]
    # MMS Forcing function for the u equation.
    type = ParsedFunction
    value = ' 20*exp(20*t)*x*x*x-6*exp(20*t)*x-(2-0.125*exp(20*t))*sin(5/2*x*pi)-0.125*exp(20*t)-1
'
  [../]
  [./v_mms_func]
    # MMS forcing function for the v equation.
    type = ParsedFunction
    value = -2.5*exp(20*t)*sin(5/2*x*pi)+2.5*exp(20*t)+25/4*(2-0.125*exp(20*t))*sin(5/2*x*pi)*pi*pi
  [../]
  [./u_right_bc]
    type = ParsedFunction
    value = 3*exp(20*t) # \nabla{u}|_{x=1} = 3\exp(20*t)
  [../]
  [./u_exact]
    # Exact solution for the MMS function for the u variable.
    type = ParsedFunction
    value = exp(20*t)*pow(x,3)+1
  [../]
  [./v_exact]
    # Exact MMS solution for v.
    type = ParsedFunction
    value = (2-0.125*exp(20*t))*sin(5/2*pi*x)+0.125*exp(20*t)+1
  [../]
[]

[Kernels]
  # Strong Form:
  # \frac{\partial u}{\partial t} - \nabla \cdot 0.5 \nabla u - v = 0
  # \frac{\partial u}{\partial t} - \nabla \cdot \nabla v = 0
  #
  # BCs:
  # u(0,y,t) = 1
  # \nabla u |_{x=1} = 3\exp(20*t)
  # v(0,y,t) = u(0.5,y,t)
  # v(1,y,t) = 3
  # \nabla u |_{y=0,1} = 0
  # \nabla v |_{y=0,1} = 0
  #
  [./u_time]
    type = TimeDerivative
    variable = u
  [../]
  [./u_diff]
    type = Diffusion
    variable = u
  [../]
  [./u_source]
    type = CoupledForce
    variable = u
    v = v
  [../]
  [./v_diff]
    type = Diffusion
    variable = v
  [../]
  [./u_mms]
    type = BodyForce
    variable = u
    function = u_mms_func
  [../]
  [./v_mms]
    type = BodyForce
    variable = v
    function = v_mms_func
  [../]
  [./v_time]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./u_left]
    type = DirichletBC
    variable = u
    boundary = left # x=0
    value = 1 # u(0,y,t)=1
  [../]
  [./u_right]
    type = FunctionNeumannBC
    variable = u
    boundary = right # x=1
    function = u_right_bc # \nabla{u}|_{x=1}=3\exp(20t)
  [../]
  [./v_left]
    type = FunctionDirichletBC
    variable = v
    boundary = left # x=0
    function = v_left_bc # v(0,y,t) = u(0.5,y,t)
  [../]
  [./v_right]
    type = DirichletBC
    variable = v
    boundary = right # x=1
    value = 3 # v(1,y,t) = 3
  [../]
[]

[Postprocessors]
  [./u_midpoint]
    type = PointValue
    variable = u
    point = '0.5 0.5 0'
    execute_on = 'initial timestep_end'
  [../]
  [./u_midpoint_exact]
    type = FunctionValuePostprocessor
    function = u_exact
    point = '0.5 0.5 0.0'
    execute_on = 'initial timestep_end'
  [../]
  [./u_error]
    type = ElementL2Error
    variable = u
    function = u_exact
    execute_on = 'initial timestep_end'
  [../]
  [./v_error]
    type = ElementL2Error
    variable = v
    function = v_exact
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.01

  solve_type = NEWTON

  end_time = 0.1
  scheme = crank-nicolson
[]

[Outputs]
  exodus = true
[]

[ICs]
  [./u_initial]
    # Use the MMS exact solution to compute the initial conditions.
    function = u_exact
    variable = u
    type = FunctionIC
  [../]
  [./v_exact]
    # Use the MMS exact solution to compute the initial condition.
    function = v_exact
    variable = v
    type = FunctionIC
  [../]
[]

modules/richards/test/tests/buckley_leverett/bl21.i

# two-phase version
# sharp front version
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 150
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-3 1E-2 3E-2 4E-2 0.5 0.5 1'
    x = '0    1E-2 1E-1 1    5   40  41'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E6
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 3E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 3E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
  [./bounds_dummy]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
  [./richardsppenalty]
    type = RichardsPPenalty
    variable = pgas
    a = 1E-18
    lower_var = pwater
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[Bounds]
  [./pwater_bounds]
    type = BoundsAux
    variable = bounds_dummy
    bounded_variable = pwater
    upper = 1E7
    lower = -110000
  [../]
[]


[ICs]
  [./water_ic]
    type = FunctionIC
    variable = pwater
    function = initial_water
  [../]
  [./gas_ic]
    type = FunctionIC
    variable = pgas
    function = initial_gas
  [../]
[]

[BCs]
  [./left_w]
    type = DirichletBC
    variable = pwater
    boundary = left
    value = 1E6
  [../]
  [./left_g]
    type = DirichletBC
    variable = pgas
    boundary = left
    value = 1E6+1000
  [../]
  [./right_w]
    type = DirichletBC
    variable = pwater
    boundary = right
    value = -100000
  [../]
  [./right_g]
    type = DirichletBC
    variable = pgas
    boundary = right
    value = 0+1000
  [../]
[]


[Functions]
  [./initial_water]
    type = ParsedFunction
    value = 1000000*(1-min(x/5,1))-100000*(max(x-5,0)/max(abs(x-5),1E-10))
  [../]
  [./initial_gas]
    type = ParsedFunction
    value = max(1000000*(1-x/5),0)+1000
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 1E-6'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'standard'

  [./bounded]
  # must use --use-petsc-dm command line argument
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type -ksp_rtol -ksp_atol'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 50 vinewtonssls 1E-20 1E-20'
  [../]

  [./standard]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 20 1E-20 1E-20'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 50

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = bl21
  interval = 10000
  exodus = true
[]

modules/combined/test/tests/simple_contact/sm/simple_contact_rspherical_sm.i

#
# This is similar to the patch test for 1D spherical elements with the
#   addition of a contact interface.
#
# The 1D mesh is pinned at x=0.  The displacement at the outer node is set to
#   -3e-3*X where X is the x-coordinate of that node.  That gives a strain of
#   -3e-3 for the x, y, and z directions.
#
# Young's modulus is 1e6, and Poisson's ratio is 0.25.  This gives:
#
# Stress xx, yy, zz = E/(1+nu)/(1-2nu)*strain*((1-nu) + nu + nu) = -6000
#

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]
  file = simple_contact_rspherical.e
  construct_side_list_from_node_list = true
[]

[GlobalParams]
  displacements = 'disp_x'
  volumetric_locking_correction = false
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '-3e-3*x'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '1 4'
    function = ur
  [../]
[]

[Contact]
  [./fred]
    master = 2
    slave = 3
    system = constraint
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    formulation = SphericalR
    block = '1 2 3'

    disp_r = disp_x

    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-11

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/chem14.i

# Check derivatives of PorousFlowPorosity with chemical=true
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.1
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1.234
  [../]
  [./eqm_k1]
    initial_condition = 0.987
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
  [./ini_sec_conc0]
    initial_condition = 0.111
  [../]
  [./ini_sec_conc1]
    initial_condition = 0.222
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowMassTimeDerivative # this is rather irrelevant: we just want something with Porosity in it
    variable = a
    fluid_component = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = a
    number_fluid_phases = 1
    number_fluid_components = 2
    number_aqueous_kinetic = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
    at_nodes = true
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    at_nodes = true
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = a
    at_nodes = true
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = a
    num_reactions = 2
    equilibrium_constants = 'eqm_k0 eqm_k1'
    primary_activity_coefficients = 1
    reactions = '1E-10
                 2E-10'  # so that mass_frac = a
    specific_reactive_surface_area = '-44.4E-2 -12E-2'
    kinetic_rate_constant = '0.678 0.7'
    activation_energy = '4.4 3.3'
    molar_volume = '3.3 2.2'
    reference_temperature = 1
    gas_constant = 7.4
    at_nodes = true
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = 'ini_sec_conc0 ini_sec_conc1'
    at_nodes = true
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    at_nodes = true
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    chemical = true
    porosity_zero = 0.1
    reference_chemistry = 'ini_sec_conc0 ini_sec_conc1'
    initial_mineral_concentrations = 'ini_sec_conc0 ini_sec_conc1'
    chemical_weights = '1.111 0.888' # so derivatives of porosity are big
    at_nodes = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

modules/porous_flow/test/tests/dirackernels/bh_except10.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
    compute_internal_energy = false
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = bh02.bh
    use_mobility = true
    use_internal_energy = true
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/porous_flow/test/tests/jacobian/chem02.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Precipitation with temperature
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.6
  [../]
  [./b]
    initial_condition = 0.4
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1.234
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
  [./ini_sec_conc]
    initial_condition = 0.222
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1E5
    stoichiometry = 2
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 2.2E5
    stoichiometry = 3
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '2.5 3.8'
    reactions = '1.1 1.2'
    specific_reactive_surface_area = -44.4E-2
    kinetic_rate_constant = 0.678
    activation_energy = 4.4
    molar_volume = 3.3
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = 1.1
    eta_exponent = 1.2
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_sec_conc
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

modules/combined/test/tests/thermal_strain/thermal_strain_sm.i

# Patch Test

# This test is designed to compute displacements from a thermal strain.

# The cube is displaced by 1e-6 units in x, 2e-6 in y, and 3e-6 in z.
#  The faces are sheared as well (1e-6, 2e-6, and 3e-6 for xy, yz, and
#  zx).  This gives a uniform strain/stress state for all six unique
#  tensor components.

# The temperature moves 100 degrees, and the coefficient of thermal
#  expansion is 1e-6.  Therefore, the strain (and the displacement
#  since this is a unit cube) is 1e-4.

[Mesh]
  file = thermal_strain_test.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./tempFunc]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '117.56 217.56'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 10
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 9
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 14
    value = 0
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = '10 12'
    function = tempFunc
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    bulk_modulus = 0.333333333333e6
    poissons_ratio = 0.0

    temp = temp
    thermal_expansion = 1e-6
  [../]
  [./stiffStuff2]
    type = Elastic
    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    bulk_modulus = 0.333333333333e6
    lambda = 0.0

    temp = temp
    thermal_expansion = 1e-6
  [../]
  [./stiffStuff3]
    type = Elastic
    block = 3

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.0

    temp = temp
    thermal_expansion = 1e-6
  [../]
  [./stiffStuff4]
    type = Elastic
    block = 4

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.0

    temp = temp
    thermal_expansion = 1e-6
  [../]
  [./stiffStuff5]
    type = Elastic
    block = 5

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    lambda = 0.0

    temp = temp
    thermal_expansion = 1e-6
  [../]
  [./stiffStuff6]
    type = Elastic
    block = 6

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    shear_modulus = 5e5

    temp = temp
    thermal_expansion = 1e-6
  [../]
  [./stiffStuff7]
    type = Elastic
    block = 7

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    shear_modulus = 5e5
    poissons_ratio = 0.0

    temp = temp
    thermal_expansion = 1e-6
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = '1 2 3 4 5 6 7'

    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    block = '1 2 3 4 5 6 7'
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 0.5
  num_steps = 2
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/test_jacobian/jacobian_test_RZ.i

# This test is designed to test the jacobian for a single
# element with/without  volumetric locking correction.

# Result: The hand coded jacobian matches well with the finite
# difference jacobian with an error norm in the order of 1e-15
# for total and incremental small strain and with an error norm
# in the order of 1e-8 for finite strain.


[Problem]
  coord_type = RZ
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = left
    value = 1.0
  [../]

  [./right]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = right
    value = 0.0
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = 0
  [../]
  [./stress]
    block = 0
  [../]
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient #Transient

  solve_type = NEWTON
  petsc_options = '-snes_check_jacobian -snes_check_jacobian_view'

  l_max_its = 1
  nl_abs_tol = 1e-4
  nl_rel_tol = 1e-6
  l_tol = 1e-6
  start_time = 0.0
  num_steps = 1
  dt = 0.005
  dtmin = 0.005
  end_time = 0.005
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/chemistry/except6.i

# Exception test.
# Incorrect number of primary activity constants

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_equilibrium = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1E2
  [../]
  [./eqm_k1]
    initial_condition = 1E-2
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'a b'
    num_reactions = 2
    equilibrium_constants = 'eqm_k0 eqm_k1'
    primary_activity_coefficients = '1'
    secondary_activity_coefficients = '1 1'
    reactions = '2 0
                 1 1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/combined/test/tests/grain_texture/random_grain_orientation.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 12
  xmax = 1000
  ymax = 300
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalBoundingBoxIC]
      x1 = 0
      y1 = 0
      x2 = 500
      y2 = 1000
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./active_bounds_elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./bnds_aux]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    execute_on = 'initial timestep_begin'
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    execute_on = 'initial timestep_begin'
    field_display = VARIABLE_COLORING
  [../]
  [./active_bounds_elemental]
    type = FeatureFloodCountAux
    variable = active_bounds_elemental
    field_display = ACTIVE_BOUNDS
    execute_on = 'initial timestep_begin'
    flood_counter = grain_tracker
  [../]
[]

[Modules]
  [./PhaseField]
    [./EulerAngles2RGB]
      crystal_structure = cubic
      euler_angle_provider = euler_angle_file
      grain_tracker = grain_tracker
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    block = 0
    T = 500 # K
    wGB = 75 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
    time_scale = 1.0e-6
  [../]
[]

[UserObjects]
  [./grain_tracker]
    type = GrainTracker
    flood_entity_type = elemental
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./euler_angle_file]
    type = RandomEulerAngleProvider
    grain_tracker_object = grain_tracker
    execute_on = 'initial timestep_begin'
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  dt = 0.2
  num_steps = 3
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/richards/test/tests/dirac/bh_fu_03.i

# fully-saturated
# injection
# fullyupwind
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  sat_UO = Saturation
  seff_UO = Seff1VG
  SUPG_UO = SUPGstandard
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 1E7
    point_file = bh03.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = -1
    fully_upwind = true
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 0
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]

[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-12 0 0  0 1E-12 0  0 0 1E-12'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON

[]

[Outputs]
  file_base = bh_fu_03
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/tensor_mechanics/test/tests/thermal_expansion_function/finite_linear.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function is a linear function
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# This version of the test uses finite deformation theory.
# The two models produce very similar results.  There are slight
# differences due to the large deformation treatment.

[Mesh]
  file = 'blocks.e'
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain1]
    type = ComputeMeanThermalExpansionFunctionEigenstrain
    block = 1
    thermal_expansion_function = cte_func_mean
    thermal_expansion_function_reference_temperature = 0.5
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
  [./thermal_expansion_strain2]
    type = ComputeInstantaneousThermalExpansionFunctionEigenstrain
    block = 2
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (0.5 * t^2 - 0.5 * tsf^2) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 0.0
               2 2.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/solid_mechanics/spherical_shell/1D-SPH_test.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces. Three versions of the test are
# provided, assuming 1D spherical geometry (1D-SPH), 2D axisymmetic geometry
# (2D-RZ), and 3D geometry (3D). The tests demonstrate that all three geometric
# approaches produce the same correct solution.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000, respectively. The resulting compressive tangential
# stress is largest at the inner wall and, from the above equation, has a value
# of -271429.
#
# RESULTS are below. Since stresses are average element values, values for the
# edge element and one-element-in are used to extrapolate the stress to the
# inner surface. The vesrion of the tests that are checked use the coarsest meshes.
#
#  Mesh    Radial elem   S(edge elem)  S(one elem in)  S(extrap to surf)
# 1D-SPH       12          -264842      -254419        -270053
# 2D-RZ        12          -265007      -254668        -270177
#  3D          12 (4x4)    -258922      -251099        -262834
#  3D          12 (6x6)    -262194      -252969        -266807
#
# 1D-SPH       48          -269679      -266390        -271323
# 2D-RZ        48          -269723      -266470        -271350
#  3D          48          -268617      -265717        -270067
#
# 1D-SPH      100          -270580      -268932        -271404
# 2D-RZ       100          -270587      -268946        -271408
#
# The numerical solution converges to the analytical solution as the mesh is
# refined.

[GlobalParams]
  displacements = 'disp_x'
[]

[Mesh]
  file = 1D-SPH_mesh.e
  construct_side_list_from_node_list = true
[]

[Problem]
  coord_type = RSPHERICAL
[]


[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    additional_generate_output = 'stress_zz'
  []
[]

[BCs]
  [./exterior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = outer
    component = 0
    factor = 200000
  [../]

  [./interior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = inner
    component = 0
    factor = 100000
  [../]
[]

[Materials]
  [./fuel_disp]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e10
    poissons_ratio = 0.345
  [../]
  [./fuel_disp_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
[]

[Debug]
    show_var_residual_norms = true
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

   start_time = 0.0
   end_time = 1
   num_steps = 1000

  dtmax = 5e6
  dtmin = 1
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    optimal_iterations = 6
    iteration_window = 0
    linear_iteration_ratio = 100
  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

#  [./Quadrature]
#    order = THIRD
#  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  csv = false
[]

modules/combined/test/tests/contact_verification/hertz_cyl/quart_symm_q4/hertz_cyl_qsym_1deg_template1.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = hertz_cyl_qsym_1deg_q4.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./disp_ramp_vert]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. -0.0020 -0.0020'
  [../]
  [./disp_ramp_zero]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 0.0 0.0'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 4
    paired_boundary = 3
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./disp_x281]
    type = NodalVariableValue
    nodeid = 280
    variable = disp_x
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_y
    boundary = '1 3'
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2 3'
    value = 0.0
  [../]
  [./top_y_disp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = disp_ramp_vert
  [../]
[]

[Materials]
  [./stuff1_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e10
    poissons_ratio = 0.0
  [../]
  [./stuff1_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./stuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./stuff2_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff2_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./stuff2_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
  [./stuff3_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '3'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff3_strain]
    type = ComputeFiniteStrain
    block = '3'
  [../]
  [./stuff3_stress]
    type = ComputeFiniteStrainElasticStress
    block = '3'
  [../]
  [./stuff4_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '4'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff4_strain]
    type = ComputeFiniteStrain
    block = '4'
  [../]
  [./stuff4_stress]
    type = ComputeFiniteStrainElasticStress
    block = '4'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-6
  nl_rel_tol = 1e-5
  l_max_its = 50
  nl_max_its = 100

  start_time = 0.0
  dt = 0.1
  dtmin = 0.1
  num_steps = 10
  end_time = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '4'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x281 top_react_x top_react_y x_disp y_disp cont_press'
    start_time = 0.9
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./interface]
    master = 3
    slave = 4
    system = constraint
    model = glued
    formulation = kinematic
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/ad_cavity_pressure/initial_temperature.i

#
# Cavity Pressure Test
#
# This test is designed to compute an internal pressure based on
#   p = n * R * T / V
# where
#   p is the pressure
#   n is the amount of material in the volume (moles)
#   R is the universal gas constant
#   T is the temperature
#   V is the volume
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total
#   initial volume is 7.
# The test adjusts n, T, and V in the following way:
#   n => n0 + alpha * t
#   T => T0 + beta * t
#   V => V0 + gamma * t
# with
#   alpha = n0
#   beta = T0 / 2
#   gamma = -(0.003322259...) * V0
#   T0 = 240.54443866068704
#   V0 = 7
#   n0 = f(p0)
#   p0 = 100
#   R = 8.314472 J * K^(-1) * mol^(-1)
#
# So, n0 = p0 * V0 / R / T0 = 100 * 7 / 8.314472 / 240.544439
#        = 0.35
#
# The parameters combined at t = 1 gives p = 301.
#
# This test sets the initial temperature to 500, but the CavityPressure
#   is told that that initial temperature is T0.  Thus, the final solution
#   is unchanged.

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = 3d.e
[]

[GlobalParams]
  volumetric_locking_correction = true
[]

[Functions]
  [./displ_positive]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.0029069767441859684'
  [../]
  [./displ_negative]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 -0.0029069767441859684'
  [../]
  [./temp1]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1.5'
    scale_factor = 240.54443866068704
  [../]
  [./material_input_function]
    type = PiecewiseLinear
    x = '0    1'
    y = '0 0.35'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 500
  [../]
  [./material_input]
  [../]
[]

[AuxVariables]
  [./pressure_residual_x]
  [../]
  [./pressure_residual_y]
  [../]
  [./pressure_residual_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    use_automatic_differentiation = true
  [../]
  [./heat]
    type = ADDiffusion
    variable = temp
    use_displaced_mesh = true
  [../]
  [./material_input_dummy]
    type = ADDiffusion
    variable = material_input
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_xx
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_yy
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_zz
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
    variable = stress_xy
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 2
    variable = stress_yz
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 0
    variable = stress_zx
  [../]
[]

[BCs]
  [./no_x_exterior]
    type = DirichletBC
    variable = disp_x
    boundary = '7 8'
    value = 0.0
  [../]
  [./no_y_exterior]
    type = DirichletBC
    variable = disp_y
    boundary = '9 10'
    value = 0.0
  [../]
  [./no_z_exterior]
    type = DirichletBC
    variable = disp_z
    boundary = '11 12'
    value = 0.0
  [../]
  [./prescribed_left]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 13
    function = displ_positive
  [../]
  [./prescribed_right]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = 14
    function = displ_negative
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '15 16'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '17 18'
    value = 0.0
  [../]
  [./no_x_interior]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]
  [./no_y_interior]
    type = DirichletBC
    variable = disp_y
    boundary = '3 4'
    value = 0.0
  [../]
  [./no_z_interior]
    type = DirichletBC
    variable = disp_z
    boundary = '5 6'
    value = 0.0
  [../]
  [./temperatureInterior]
    type = ADFunctionDirichletBC
    boundary = 100
    function = temp1
    variable = temp
  [../]
  [./MaterialInput]
    type = ADFunctionDirichletBC
    boundary = '100 13 14 15 16'
    function = material_input_function
    variable = material_input
  [../]
  [./CavityPressure]
    [./1]
      boundary = 100
      initial_pressure = 100
      material_input = materialInput
      R = 8.314472
      temperature = aveTempInterior
      initial_temperature = 240.54443866068704
      volume = internalVolume
      startup_time = 0.5
      output = ppress
      save_in = 'pressure_residual_x pressure_residual_y pressure_residual_z'
      use_automatic_differentiation = true
    [../]
  [../]
[]

[Materials]
  [./elast_tensor1]
    type = ComputeElasticityTensor
    C_ijkl = '0 5'
    fill_method = symmetric_isotropic
    block = 1
  [../]
  [./strain1]
    type = ADComputeFiniteStrain
    block = 1
  [../]
  [./stress1]
    type = ADComputeFiniteStrainElasticStress
    block = 1
  [../]
  [./elast_tensor2]
    type = ComputeElasticityTensor
    C_ijkl = '0 5'
    fill_method = symmetric_isotropic
    block = 2
  [../]
  [./strain2]
    type = ADComputeFiniteStrain
    block = 2
  [../]
  [./stress2]
    type = ADComputeFiniteStrainElasticStress
    block = 2
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  nl_rel_tol = 1e-12
  l_tol = 1e-12

  l_max_its = 20

  dt = 0.5
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 100
    execute_on = 'initial linear'
  [../]
  [./aveTempInterior]
    type = SideAverageValue
    boundary = 100
    variable = temp
    execute_on = 'initial linear'
  [../]
  [./materialInput]
    type = SideAverageValue
    boundary = '7 8 9 10 11 12'
    variable = material_input
    execute_on = linear
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/dirackernels/injection_production.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 10
    ny = 10
    nz = 1
    xmin = -50
    xmax = 50
    ymin = -50
    ymax = 50
    zmin = 0
    zmax = 10
  []
  [./central_nodes]
    input = gen
    type = ExtraNodesetGenerator
    new_boundary = central_nodes
    coord = '0 0 0 0 0 10'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
    initial_condition = 20E6
  [../]
  [./temperature]
    initial_condition = 400
    scaling = 1E-6 # fluid enthalpy is roughly 1E6
  [../]
[]

[BCs]
  [./injection_temperature]
    type = DirichletBC
    variable = temperature
    value = 300
    boundary = central_nodes
  [../]
[]

[DiracKernels]
  [./fluid_injection]
    type = PorousFlowPeacemanBorehole
    variable = porepressure
    SumQuantityUO = injected_mass
    point_file = injection.bh
    function_of = pressure
    fluid_phase = 0
    bottom_p_or_t = 21E6
    unit_weight = '0 0 0'
    use_mobility = true
    character = -1
  [../]
  [./fluid_production]
    type = PorousFlowPeacemanBorehole
    variable = porepressure
    SumQuantityUO = produced_mass
    point_file = production.bh
    function_of = pressure
    fluid_phase = 0
    bottom_p_or_t = 20E6
    unit_weight = '0 0 0'
    use_mobility = true
    character = 1
  [../]
  [./remove_heat_at_production_well]
    type = PorousFlowPeacemanBorehole
    variable = temperature
    SumQuantityUO = produced_heat
    point_file = production.bh
    function_of = pressure
    fluid_phase = 0
    bottom_p_or_t = 20E6
    unit_weight = '0 0 0'
    use_mobility = true
    use_enthalpy = true
    character = 1
  [../]
[]

[UserObjects]
  [./injected_mass]
    type = PorousFlowSumQuantity
  [../]
  [./produced_mass]
    type = PorousFlowSumQuantity
  [../]
  [./produced_heat]
    type = PorousFlowSumQuantity
  [../]
[]

[Postprocessors]
  [./heat_joules_extracted_this_timestep]
    type = PorousFlowPlotQuantity
    uo = produced_heat
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 2E-4
      bulk_modulus = 2E9
      viscosity = 1E-3
      density0 = 1000
      cv = 4000.0
      cp = 4000.0
    [../]
  [../]
[]

[PorousFlowUnsaturated]
  porepressure = porepressure
  temperature = temperature
  coupling_type = ThermoHydro
  gravity = '0 0 0'
  fp = the_simple_fluid
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosityConst # only the initial value of this is ever used
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    solid_bulk_compliance = 1E-10
    fluid_bulk_modulus = 2E9
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0   0 1E-12 0   0 0 1E-12'
  [../]
  [./thermal_expansion]
    type = PorousFlowConstantThermalExpansionCoefficient
    fluid_coefficient = 5E-6
    drained_coefficient = 2E-4
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '1 0 0  0 1 0  0 0 1'
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    density = 2500.0
    specific_heat_capacity = 1200.0
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 2E6
  dt = 2E5
[]

[Outputs]
  exodus = true
[]

test/tests/controls/time_periods/aux_scalar_kernels/control.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux0]
    family = SCALAR
  [../]
  [./aux1]
    family = SCALAR
  [../]
[]

[Functions]
  [./func]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxScalarKernels]
  [./scalar_aux0]
    type = FunctionScalarAux
    variable = aux0
    function = func
  [../]
  [./scalar_aux1]
    type = FunctionScalarAux
    variable = aux1
    function = func
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

[Controls]
  [./damping_control]
    type = TimePeriod
    disable_objects = '*/scalar_aux0 */scalar_aux1'
    start_time = 0.25
    end_time = 0.75
    execute_on = 'initial timestep_begin'
  [../]
[]

modules/tensor_mechanics/examples/coal_mining/cosserat_mc_only.i

# Strata deformation and fracturing around a coal mine
#
# A 2D geometry is used that simulates a transverse section of
# the coal mine.  The model is actually 3D, but the "x"
# dimension is only 10m long, meshed with 1 element, and
# there is no "x" displacement.  The mine is 300m deep
# and just the roof is studied (0<=z<=300).  The model sits
# between 0<=y<=450.  The excavation sits in 0<=y<=150.  This
# is a "half model": the boundary conditions are such that
# the model simulates an excavation sitting in -150<=y<=150
# inside a model of the region -450<=y<=450.  The
# excavation height is 3m (ie, the excavation lies within
# 0<=z<=3).  Mining is simulated by moving the excavation's
# roof down, until disp_z=-3 at t=1.
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions are:
#  - disp_x = 0 everywhere
#  - disp_y = 0 at y=0 and y=450
#  - disp_z = 0 for y>150
#  - disp_z = -3 at maximum, for 0<=y<=150.  See excav function.
# That is, rollers on the sides, free at top, and prescribed at bottom.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa.  The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = -0.025*(300-z) MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg.  The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# Below you will see weak-plane parameters and AuxVariables, etc.
# These are not actally used in this example.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 3 MPa
# MC friction angle = 37 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa, varying down to 1 MPa when tensile strain = 1
#
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 1
    xmin = -5
    xmax = 5
    nz = 40
    zmin = 0
    zmax = 400.0
    bias_z = 1.1
    ny = 30 # make this a multiple of 3, so y=150 is at a node
    ymin = 0
    ymax = 450
  []
  [left]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 11
    normal = '0 -1 0'
    input = generated_mesh
  []
  [right]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 12
    normal = '0 1 0'
    input = left
  []
  [front]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 13
    normal = '-1 0 0'
    input = right
  []
  [back]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 14
    normal = '1 0 0'
    input = front
  []
  [top]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 15
    normal = '0 0 1'
    input = back
  []
  [bottom]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 16
    normal = '0 0 -1'
    input = top
  []
  [excav]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '-5 0 0'
    top_right = '5 150 3'
    input = bottom
  []
  [roof]
    type = SideSetsBetweenSubdomainsGenerator
    new_boundary = 21
    master_block = 0
    paired_block = 1
    input = excav
  []
  [hole]
    type = BlockDeletionGenerator
    block_id = 1
    input = roof
  []
[]

[GlobalParams]
  block = 0
  perform_finite_strain_rotations = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
[]

[Kernels]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_x
    component = 0
  [../]
  [./gravity]
    type = Gravity
    use_displaced_mesh = false
    variable = disp_z
    value = -10E-6
  [../]
[]


[AuxVariables]
  [./disp_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_shear]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_internal_parameter
    variable = mc_shear
  [../]
  [./mc_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = mc_plastic_internal_parameter
    variable = mc_tensile
  [../]
  [./wp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_internal_parameter
    variable = wp_shear
  [../]
  [./wp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_internal_parameter
    variable = wp_tensile
  [../]
  [./mc_shear_f]
    type = MaterialStdVectorAux
    index = 6
    property = mc_plastic_yield_function
    variable = mc_shear_f
  [../]
  [./mc_tensile_f]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_yield_function
    variable = mc_tensile_f
  [../]
  [./wp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_yield_function
    variable = wp_shear_f
  [../]
  [./wp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_yield_function
    variable = wp_tensile_f
  [../]
[]



[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '11 12 16 21' # note addition of 16 and 21
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '16'
    value = 0.0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = '11 12'
    value = 0.0
  [../]
  [./roof]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 21
    function = excav_sideways
  [../]
[]

[Functions]
  [./ini_xx]
    type = ParsedFunction
    value = '-0.8*2500*10E-6*(400-z)'
  [../]
  [./ini_zz]
    type = ParsedFunction
    value = '-2500*10E-6*(400-z)'
  [../]
  [./excav_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  e_h  closure_dist'
    vals = '1.0   0    150.0 -3.0 15.0'
    value = 'e_h*max(min((t/end_t*(ymax-ymin)+ymin-y)/closure_dist,1),0)'
  [../]
  [./excav_downwards]
    type = ParsedFunction
    vars = 'end_t ymin ymax  e_h  closure_dist'
    vals = '1.0   0    150.0 -3.0 15.0'
    value = 'e_h*t/end_t*max(min(((ymax-ymin)+ymin-y)/closure_dist,1),0)'
  [../]
[]

[UserObjects]
  [./mc_coh_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 2.99 # MPa
    value_residual = 3.01 # MPa
    rate = 1.0
  [../]
  [./mc_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.65 # 37deg
  [../]
  [./mc_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.15 # 8deg
  [../]

  [./mc_tensile_str_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0 # MPa
    value_residual = 1.0 # MPa
    rate = 1.0
  [../]
  [./mc_compressive_str]
    type = TensorMechanicsHardeningCubic
    value_0 = 100 # Large!
    value_residual = 100
    internal_limit = 0.1
  [../]

  [./wp_coh_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_tan_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.36 # 20deg
  [../]
  [./wp_tan_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.18 # 10deg
  [../]

  [./wp_tensile_str_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_compressive_str_soften]
    type = TensorMechanicsHardeningCubic
    value_0 = 100
    value_residual = 1.0
    internal_limit = 1.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3
  [../]

  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = 'ini_xx 0 0  0 ini_xx 0  0 0 ini_zz'
    eigenstrain_name = ini_stress
  [../]

  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    block = 0
    inelastic_models = mc
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedMohrCoulombCosseratStressUpdate
    block = 0
    warn_about_precision_loss = false
    host_youngs_modulus = 8E3
    host_poissons_ratio = 0.25
    base_name = mc
    tensile_strength = mc_tensile_str_strong_harden
    compressive_strength = mc_compressive_str
    cohesion = mc_coh_strong_harden
    friction_angle = mc_fric
    dilation_angle = mc_dil
    max_NR_iterations = 100000
    smoothing_tol = 0.1 # MPa  # Must be linked to cohesion
    yield_function_tol = 1E-9 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    block = 0
    warn_about_precision_loss = false
    base_name = wp
    cohesion = wp_coh_harden
    tan_friction_angle = wp_tan_fric
    tan_dilation_angle = wp_tan_dil
    tensile_strength = wp_tensile_str_harden
    compressive_strength = wp_compressive_str_soften
    max_NR_iterations = 10000
    tip_smoother = 0.1
    smoothing_tol = 0.1 # MPa  # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0E-3
  [../]


  [./density]
    type = GenericConstantMaterial
    prop_names = density
    prop_values = 2500
  [../]
[]

[Postprocessors]
  [./subsidence]
    type = PointValue
    point = '0 0 400'
    variable = disp_z
    use_displaced_mesh = false
  [../]
[]
[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options = '-snes_converged_reason'
  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'

  line_search = bt

  nl_abs_tol = 1e-3
  nl_rel_tol = 1e-5

  l_max_its = 30
  nl_max_its = 1000

  start_time = 0.0
  dt = 0.2
  end_time = 0.2

[]

[Outputs]
  file_base = cosserat_mc_only
  interval = 1
  print_linear_residuals = false
  csv = true
  exodus = true
  [./console]
    type = Console
    output_linear = false
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/random3.i

# Using CappedMohrCoulomb with Mohr-Coulomb failure only
# Plasticity models:
# Cohesion = 1MPa
# Friction angle = dilation angle = 0.5
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 1234
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1234
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f5]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 6
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 7
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 8
    variable = f2
  [../]
  [./f3]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 9
    variable = f3
  [../]
  [./f4]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 10
    variable = f4
  [../]
  [./f5]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 11
    variable = f5
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = int0
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./tot_iters]
    type = ElementIntegralMaterialProperty
    mat_prop = plastic_NR_iterations
    outputs = console
  [../]
  [./intnl_max]
    type = ElementExtremeValue
    variable = int0
    outputs = console
  [../]
  [./raw_f0]
    type = ElementExtremeValue
    variable = f0
    outputs = console
  [../]
  [./raw_f1]
    type = ElementExtremeValue
    variable = f1
    outputs = console
  [../]
  [./raw_f2]
    type = ElementExtremeValue
    variable = f2
    outputs = console
  [../]
  [./raw_f3]
    type = ElementExtremeValue
    variable = f3
    outputs = console
  [../]
  [./raw_f4]
    type = ElementExtremeValue
    variable = f4
    outputs = console
  [../]
  [./raw_f5]
    type = ElementExtremeValue
    variable = f5
    outputs = console
  [../]
  [./iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./f0]
    type = FunctionValuePostprocessor
    function = should_be_zero0_fcn
  [../]
  [./f1]
    type = FunctionValuePostprocessor
    function = should_be_zero1_fcn
  [../]
  [./f2]
    type = FunctionValuePostprocessor
    function = should_be_zero2_fcn
  [../]
  [./f3]
    type = FunctionValuePostprocessor
    function = should_be_zero3_fcn
  [../]
  [./f4]
    type = FunctionValuePostprocessor
    function = should_be_zero4_fcn
  [../]
  [./f5]
    type = FunctionValuePostprocessor
    function = should_be_zero5_fcn
  [../]
[]

[Functions]
  [./should_be_zero0_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f0'
  [../]
  [./should_be_zero1_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f1'
  [../]
  [./should_be_zero2_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f2'
  [../]
  [./should_be_zero3_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f3'
  [../]
  [./should_be_zero4_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f4'
  [../]
  [./should_be_zero5_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f5'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E12
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E12
  [../]
  [./coh]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E6
    value_residual = 0
    internal_limit = 1
  [../]
  [./ang]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.9
    value_residual = 0.2
    internal_limit = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 1.3E9'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 1E5
    max_NR_iterations = 100
    yield_function_tol = 1.0E-1
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random3
  csv = true
[]

modules/combined/test/tests/fdp_geometric_coupling/fdp_geometric_coupling.i

[Mesh]
  file = twoBlocksContactDiceSlave2OffsetGap.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 100.0
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 1 1'
    scale_factor = 10.0
  [../]

  [./tempFunc]
    type = PiecewiseLinear
    x = '0. 3.'
    y = '100.0 440.0'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block1]
    block = 1
    volumetric_locking_correction = true
    incremental = true
    strain = FINITE
    eigenstrain_names = 'thermal_expansion1'
    decomposition_method = EigenSolution
  [../]
  [./block2]
    block = 2
    volumetric_locking_correction = true
    incremental = true
    strain = FINITE
    eigenstrain_names = 'thermal_expansion2'
    decomposition_method = EigenSolution
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./left_right_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1 4'
    value = 0.0
  [../]

  [./left_right_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 4'
    value = 0.0
  [../]

  [./left_right_z]
    type = DirichletBC
    variable = disp_z
    boundary = '1 4'
    value = 0.0
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = '2 3'
    function = tempFunc
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e8
    system = Constraint
  [../]
[]

[Materials]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

  [./stress1]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]

  [./thermal_expansion1]
    type = ComputeThermalExpansionEigenstrain
    block = 1
    thermal_expansion_coeff = 1e-4
    stress_free_temperature = 100.0
    temperature = temp
    eigenstrain_name = thermal_expansion1
  [../]

  [./thermal_expansion2]
    type = ComputeThermalExpansionEigenstrain
    block = 2
    thermal_expansion_coeff = 1e-5
    stress_free_temperature = 100.0
    temperature = temp
    eigenstrain_name = thermal_expansion2
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    block = '1 2'
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Preconditioning]
  [./FDP]
    type = FDP
    full = true
    implicit_geometric_coupling = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -mat_fd_coloring_err -mat_fd_type'
  petsc_options_value = 'lu       1e-8                 ds'

  nl_rel_tol = 1e-10

  l_max_its = 5
  nl_max_its = 3
  dt = 5.0e-1
  num_steps = 2
[]

[Outputs]
  file_base = fdp_geometric_coupling_out
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/fflux12.i

# 1phase, 3components, constant viscosity, constant insitu permeability
# density with constant bulk, FLAC relative perm with a cubic, nonzero gravity, unsaturated with VG
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
  [./massfrac1]
  [../]
[]

[ICs]
  [./pp]
    type = RandomIC
    variable = pp
    min = -1.0
    max = 0.0
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 0.3
  [../]
  [./massfrac1]
    type = RandomIC
    variable = massfrac1
    min = 0
    max = 0.4
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
    gravity = '-1 -0.1 0'
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = massfrac0
    gravity = '-1 -0.1 0'
  [../]
  [./flux2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 2
    variable = massfrac1
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0 massfrac1'
    number_fluid_phases = 1
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.6
    alpha = 1 # small so that most effective saturations are close to 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0 massfrac1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityFLAC
    m = 10
    phase = 0
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/porous_flow/test/tests/jacobian/phe01.i

# Capped weak-plane plasticity, Kernel = PorousFlowPlasticHeatEnergy
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temperature]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
  [./temp]
    type = RandomIC
    variable = temperature
    min = 0.1
    max = 0.2
  [../]
[]

[Kernels]
  [./phe]
    type = PorousFlowPlasticHeatEnergy
    variable = temperature
  [../]
  [./dummy_disp_x]
    type = PorousFlowPlasticHeatEnergy
    coeff = -1.3
    variable = disp_x
  [../]
  [./dummy_disp_y]
    type = PorousFlowPlasticHeatEnergy
    coeff = 1.1
    variable = disp_y
  [../]
  [./dummy_disp_z]
    type = PorousFlowPlasticHeatEnergy
    coeff = 0.2
    variable = disp_z
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temperature disp_x disp_y disp_z'
    number_fluid_phases = 0
    number_fluid_components = 0
  [../]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 2
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 3
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 100
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0
    internal_0 = -2
    internal_limit = 0
  [../]
[]

[Materials]
  [./temp]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./porosity]
    type = PorousFlowPorosity
    thermal = true
    mechanical = true
    porosity_zero = 0.3
    thermal_expansion_coeff = 1.3
  [../]
  [./volstrain]
    type = PorousFlowVolumetricStrain
  [../]
  [./phe]
    type = ComputePlasticHeatEnergy
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 0 1  0 1 -1.5'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-10
    perfect_guess = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/frictional_contact/single_point_2d/sm/single_point_2d_sm.i

[Mesh]
  file = single_point_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./horizontal_movement]
    type = ParsedFunction
    value = t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
  [../]
[]

[AuxKernels]
  [./incslip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./incslip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./botx2]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./boty2]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = -0.005
  [../]
[]

[Materials]
  [./bottom]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e9
  [../]
  [./top]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu    superlu_dist'
  petsc_options = '-mat_superlu_dist_iterrefine -mat_superlu_dist_replacetinypivot'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 200
  dt = 0.001
  end_time = 0.01
  num_steps = 1000
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  dtmin = 0.001
  l_tol = 1e-3
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = coulomb
    system = constraint
    friction_coefficient = '0.25'
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    master = '2'
    slave = '3'
  [../]
[]

test/tests/interfaces/random/random_material.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 1e-5
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[Materials]
  [./random]
    type = RandomMaterial
    block = 0
    outputs = exodus
    output_properties = rand_real
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/kernels/ad_jacobians/test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./damage_dt]
    type = ADTimeDerivative
    variable = u
  [../]
  [./damage]
    type = ADBodyForce
    value = 1
    variable = u
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

modules/tensor_mechanics/test/tests/jacobian/tensile_update4.i

# Tensile, update version, with strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 -1 0.5  1 1.9 0  0.5 0 3'
    eigenstrain_name = ini_stress
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform_inclined5.i

# Plastic deformation, shear failure, with inclined normal direction = (1, 0, 0)
# With Young = 10, poisson=0.25 (Lame lambda=4, mu=4)
# applying the following
# deformation to the xmax surface of a unit cube:
# disp_x = 5*t/6
# disp_y = 6*t
# disp_z = 8*t
# should yield trial stress:
# stress_xx = 10*t
# stress_xz = 32*t
# stress_xy = 24*t (so q_trial = 40*t)
# Use tan(friction_angle) = 0.5 and tan(dilation_angle) = 1/6, and cohesion=20,
# the system should return to p=0, q=20, ie stress_xx=0, stress_zx=16,
# stress_yx=12 on the first time step (t=1)
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = right
    function = 5*t/6
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = right
    function = 6*t
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = right
    function = 8*t
  [../]
[]

[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 20
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.166666666667
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '4 4'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakInclinedPlaneStressUpdate
    normal_vector = '1 0 0'
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform_inclined5
  csv = true
[]

modules/richards/test/tests/jacobian_1/jn10.i

# unsaturated = true
# gravity = false
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGnone
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn10
  exodus = false
[]

test/tests/multiapps/picard/picard_adaptive_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_abs_tol = 1e-14

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.1
    # cutback_factor, growth_factor, optimal_iterations, time_dt and time_t added through CLI args
  [../]
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = picard_adaptive_sub.i
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

modules/tensor_mechanics/test/tests/cp_user_object/substep.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./gss]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./gss]
    type = MaterialStdVectorAux
    variable = gss
    property = state_var_gss
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = tdisp
  [../]
[]

[UserObjects]
  [./slip_rate_gss]
    type = CrystalPlasticitySlipRateGSS
    variable_size = 12
    slip_sys_file_name = input_slip_sys.txt
    num_slip_sys_flowrate_props = 2
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    uo_state_var_name = state_var_gss
  [../]
  [./slip_resistance_gss]
    type = CrystalPlasticitySlipResistanceGSS
    variable_size = 12
    uo_state_var_name = state_var_gss
  [../]
  [./state_var_gss]
    type = CrystalPlasticityStateVariable
    variable_size = 12
    groups = '0 4 8 12'
    group_values = '60.8 60.8 60.8'
    uo_state_var_evol_rate_comp_name = state_var_evol_rate_comp_gss
    scale_factor = 1.0
  [../]
  [./state_var_evol_rate_comp_gss]
    type = CrystalPlasticityStateVarRateComponentGSS
    variable_size = 12
    hprops = '1.0 541.5 109.8 2.5'
    uo_slip_rate_name = slip_rate_gss
    uo_state_var_name = state_var_gss
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainUObasedCP
    block = 0
    stol = 1e-2
    tan_mod_type = exact
    maximum_substep_iteration = 10
    uo_slip_rates = 'slip_rate_gss'
    uo_slip_resistances = 'slip_resistance_gss'
    uo_state_vars = 'state_var_gss'
    uo_state_var_evol_rate_comps = 'state_var_evol_rate_comp_gss'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'ux uy uz'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]

[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./gss]
    type = ElementAverageValue
    variable = gss
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 2.0

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 30.0
  dtmin = 0.5
  num_steps = 10
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  exodus = true
  csv = true
  gnuplot = true
[]

modules/porous_flow/test/tests/recover/theis.i

# Tests that PorousFlow can successfully recover using a checkpoint file.
# This test contains stateful material properties, adaptivity and integrated
# boundary conditions with nodal-sized materials.
#
# This test file is run three times:
# 1) The full input file is run to completion
# 2) The input file is run for half the time and checkpointing is included
# 3) The input file is run in recovery using the checkpoint data
#
# The final output of test 3 is compared to the final output of test 1 to verify
# that recovery was successful.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmax = 100
  bias_x = 1.05
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = Y
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Adaptivity]
  marker = marker
  max_h_level = 4
  [./Indicators]
    [./front]
      type = GradientJumpIndicator
      variable = zi
    [../]
  [../]
  [./Markers]
    [./marker]
      type = ErrorFractionMarker
      indicator = front
      refine = 0.8
      coarsen = 0.2
    [../]
  [../]
[]

[AuxVariables]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./y0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1]
    type = PorousFlowPropertyAux
    variable = x1
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./y0]
    type = PorousFlowPropertyAux
    variable = y0
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = timestep_end
  [../]
[]

[Variables]
  [./pgas]
    initial_condition = 20e6
  [../]
  [./zi]
    initial_condition = 0
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pgas
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pgas
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = zi
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = zi
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowWaterNCG
    water_fp = water
    gas_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = zi
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
  [../]
[]

[BCs]
  [./aquifer]
    type = PorousFlowPiecewiseLinearSink
    variable = pgas
    boundary = right
    pt_vals = '0 1e8'
    multipliers = '0 1e8'
    flux_function = 1e-6
    PT_shift = 20e6
  [../]
[]

[DiracKernels]
  [./source]
    type = PorousFlowSquarePulsePointSource
    point = '0 0 0'
    mass_flux = 2
    variable = zi
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 2e2
  dt = 50
[]

[VectorPostprocessors]
  [./line]
    type = NodalValueSampler
    sort_by = x
    variable = 'pgas zi'
  [../]
[]

[Outputs]
  print_linear_residuals = false
  perf_graph = true
  csv = true
[]

test/tests/transfers/multiapp_copy_transfer/array_variable_transfer/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
    order = FIRST
    family = LAGRANGE
    components = 2
  []
[]

[Kernels]
  [diff]
    type = ArrayDiffusion
    variable = u
    diffusion_coefficient = dc
  []
  [reaction]
    type = ArrayReaction
    variable = u
    reaction_coefficient = rc
  []
[]

[BCs]
  [left]
    type = ArrayDirichletBC
    variable = u
    boundary = 1
    values = '0 0'
  []

  [right]
    type = ArrayDirichletBC
    variable = u
    boundary = 2
    values = '1 2'
  []
[]

[Materials]
  [dc]
    type = GenericConstantArray
    prop_name = dc
    prop_value = '1 1'
  []
  [rc]
    type = GenericConstant2DArray
    prop_name = rc
    prop_value = '1 0; -0.1 1'
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/grid-sequencing/vi-fine-alone.i

l=10
nx=80
num_steps=2

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmax = ${l}
  nx = ${nx}
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [bounds][]
[]

[Bounds]
  [bounds]
    type = BoundsAux
    variable = bounds
    bounded_variable = u
    upper = ${l}
    lower = 0
  []
[]

[ICs]
  [u]
    type = FunctionIC
    variable = u
    function = 'x'
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = Diffusion
    variable = u
  []
  [ffn]
    type = BodyForce
    variable = u
    function = 'if(x<5,-1,1)'
  []
[]

[BCs]
  [left]
    type = DirichletBC
    boundary = left
    value = 0
    variable = u
  []
  [right]
    type = DirichletBC
    boundary = right
    value = ${l}
    variable = u
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  num_steps = ${num_steps}
  solve_type = NEWTON
  dtmin = 1
  petsc_options = '-snes_vi_monitor'
  petsc_options_iname = '-snes_max_linear_solve_fail -ksp_max_it -pc_type -sub_pc_factor_levels -snes_linesearch_type -snes_type'
  petsc_options_value = '0                           30          asm      16                    basic                 vinewtonrsls'
[]

[Outputs]
  exodus = true
  [csv]
    type = CSV
    execute_on = 'nonlinear timestep_end'
  []
  [dof]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Debug]
  show_var_residual_norms = true
[]

[Postprocessors]
  active = 'upper_violations lower_violations'
  [upper_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = ${fparse 10+1e-8}
    comparator = 'greater'
  []
  [lower_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = -1e-8
    comparator = 'less'
  []
  [nls]
    type = NumNonlinearIterations
  []
  [cum_nls]
    type = CumulativeValuePostprocessor
    postprocessor = nls
  []
[]

modules/level_set/test/tests/kernels/olsson_reinitialization/olsson_1d.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 8
  ny = 8
  uniform_refine = 2
[]

[Variables]
  [./phi]
  [../]
[]

[AuxVariables]
  [./phi_0]
    family = MONOMIAL
    order = FIRST
  [../]
  [./phi_exact]
  [../]
[]

[AuxKernels]
  [./phi_exact]
    type = FunctionAux
    function = phi_exact
    variable = phi_exact
  [../]
[]

[Functions]
  [./phi_initial]
    type = ParsedFunction
    value = '1-x'
  [../]
  [./phi_exact]
    type = ParsedFunction
    vars = epsilon
    vals = 0.05
    value = '1 / (1+exp((x-0.5)/epsilon))'
  [../]
[]

[ICs]
  [./phi_ic]
    type = FunctionIC
    function = phi_initial
    variable = phi
  [../]
  [./phi_0_ic]
    type = FunctionIC
    function = phi_initial
    variable = phi_0
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = phi
  [../]

  [./reinit]
    type = LevelSetOlssonReinitialization
    variable = phi
    phi_0 = phi_0
    epsilon = 0.05
  [../]
[]

[UserObjects]
  [./arnold]
    type = LevelSetOlssonTerminator
    tol = 0.1
  [../]
[]

[Postprocessors]
  [./error]
    type = ElementL2Error
    variable = phi
    function = phi_exact
    execute_on = 'initial timestep_end'
  [../]
  [./ndofs]
    type = NumDOFs
  [../]
[]

[VectorPostprocessors]
  [./line]
    type = LineValueSampler
    start_point = '0 0.5 0'
    end_point =  '1 0.5 0'
    variable = phi
    num_points = 100
    sort_by = x
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  l_max_its = 100
  nl_max_its = 100
  solve_type = PJFNK
  num_steps = 10
  start_time = 0
  nl_abs_tol = 1e-13
  scheme = implicit-euler
  dt = 0.05
  petsc_options_iname = '-pc_type -pc_sub_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg    300'
[]

[Outputs]
  exodus = true
  [./out]
    type = CSV
    time_data = true
    file_base = output/olsson_1d_out
  [../]
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_added_mass_gravity.i

# Test for small strain euler beam vibration in y direction
# Test uses NodalGravity instead of UserForcingFunctionNodalKernel to apply the
# force.

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The beam is massless with a lumped mass at the end of the beam
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 1e4
# Shear modulus (G) = 4e7
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 0.01
# Iy = 1e-4 = Iz
# Length (L)= 4 m
# mass = 0.01899772 at the cantilever end
# mass = 2.0 at the fixed end (just for file testing purposes does not alter result)

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 6.4e6
# Therefore, the beam behaves like a Euler-Bernoulli beam.

# The theoretical first frequency of this beam is:
# f1 = 1/(2 pi) * sqrt(3EI/(mL^3)) = 0.25

# This implies that the corresponding time period of this beam is 4s.

# The FEM solution for this beam with 10 element gives time periods of 4s with time step of 0.01s.
# A higher time step of 0.1 s is used in the test to reduce computational time.

# The time history from this analysis matches with that obtained from Abaqus.

# Values from the first few time steps are as follows:
# time   disp_y                vel_y                accel_y
# 0.0    0.0                   0.0                  0.0
# 0.1    0.0013076435060869    0.026152870121738    0.52305740243477
# 0.2    0.0051984378734383    0.051663017225289   -0.01285446036375
# 0.3    0.010269120909367     0.049750643493289   -0.02539301427625
# 0.4    0.015087433925158     0.046615616822532   -0.037307519138892
# 0.5    0.019534963888307     0.042334982440433   -0.048305168503101

[Mesh]
  type = GeneratedMesh
  xmin = 0.0
  xmax = 4.0
  nx = 10
  dim = 1
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = NodalGravity
    variable = disp_y
    boundary = 'left right'
    gravity_value = 52.6378954948 # inverse of nodal mass at cantilever end
    function = force
  #  nodal_mass_file = nodal_mass.csv # commented out for testing purposes
  # mass = 0.01899772 # commented out for testing purposes
  [../]
  [./x_inertial]
    type = NodalTranslationalInertia
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
  [../]
  [./y_inertial]
    type = NodalTranslationalInertia
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
  [../]
  [./z_inertial]
    type = NodalTranslationalInertia
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 10.0'
    y = '0.0 1e-2  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  petsc_options_iname = '-ksp_type -pc_type'
  petsc_options_value = 'preonly   lu'

  dt = 0.1
  end_time = 5.0
  timestep_tolerance = 1e-6
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e4
    poissons_ratio = -0.999875
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.01
    Ay = 0.0
    Az = 0.0
    Iy = 1.0e-4
    Iz = 1.0e-4
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  file_base = dyn_euler_small_added_mass_out
  exodus = true
  csv = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/ad_simple_linear/linear-ad.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_x]
    scaling = 1e-10
  [../]
  [./disp_y]
    scaling = 1e-10
  [../]
  [./disp_z]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_x]
    type = ADStressDivergenceTensors
    component = 0
    variable = disp_x
  [../]
  [./stress_y]
    type = ADStressDivergenceTensors
    component = 1
    variable = disp_y
  [../]
  [./stress_z]
    type = ADStressDivergenceTensors
    component = 2
    variable = disp_z
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeSmallStrain
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
  file_base = "linear-out"
[]

modules/tensor_mechanics/test/tests/1D_axisymmetric/axisymm_gps_finite.i

# this test checks the asixymmetric 1D generalized plane strain formulation using finite strains

[GlobalParams]
  displacements = disp_x
  scalar_out_of_plane_strain = scalar_strain_yy
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = line.e
[]

[Variables]
  [./disp_x]
  [../]
  [./scalar_strain_yy]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    initial_condition = 580.0
  [../]
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '580 580 680'
  [../]
  [./disp_x]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 2e-3'
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./GeneralizedPlaneStrain]
      [./gps]
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./temp]
    type = FunctionAux
    variable = temp
    function = temp
    execute_on = 'timestep_begin'
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    boundary = 1
    value = 0
    variable = disp_x
  [../]
  [./disp_x]
    type = FunctionDirichletBC
    boundary = 2
    function = disp_x
    variable = disp_x
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 3600
    poissons_ratio = 0.2
  [../]

  [./strain]
    type = ComputeAxisymmetric1DFiniteStrain
    eigenstrain_names = eigenstrain
    scalar_out_of_plane_strain = scalar_strain_yy
  [../]

  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-6
    temperature = temp
    stress_free_temperature = 580
    eigenstrain_name = eigenstrain
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_max_its = 50
  l_tol = 1e-6
  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  start_time = 0
  end_time = 2
  num_steps = 2
[]

[Outputs]
  exodus = true
  console = true
[]

test/tests/multiapps/move/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '1 1 0'
    input_files = sub.i
    output_in_position = true
    move_time = 0.05
    move_positions = '2 2 0'
    move_apps = 0
  [../]
[]

modules/tensor_mechanics/test/tests/1D_axisymmetric/axisymm_plane_strain_small.i

#
# This test checks elastic stress calculations with mechanical and thermal
# strain using small strain formulation. Young's modulus is 3600, and Poisson's ratio is 0.2.
# The axisymmetric, plane strain 1D mesh is pulled with 1e-6 strain.  Thus,
# the strain is [1e-6, 0, 1e-6] (xx, yy, zz).  This gives stress of
# [5e-3, 2e-3, 5e-3].  After a temperature increase of 100 with alpha of
# 1e-8, the stress becomes [-1e-3, -4e-3, -1e-3].
#

[GlobalParams]
  displacements = disp_x
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = line.e
[]

[Variables]
  [./disp_x]
  [../]
[]

[AuxVariables]
  [./temp]
    initial_condition = 580.0
  [../]
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '580 580 680'
  [../]
  [./disp_x]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 2e-6'
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./ps]
        planar_formulation = PLANE_STRAIN
        strain = SMALL
        generate_output = 'strain_xx strain_zz stress_xx stress_yy stress_zz'
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    function = temp
    execute_on = 'timestep_begin'
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    boundary = 1
    value = 0
    variable = disp_x
  [../]
  [./disp_x]
    type = FunctionDirichletBC
    boundary = 2
    function = disp_x
    variable = disp_x
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 3600
    poissons_ratio = 0.2
  [../]

  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-8
    temperature = temp
    stress_free_temperature = 580
    eigenstrain_name = eigenstrain
  [../]

  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_max_its = 50
  l_tol = 1e-6
  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  start_time = 0
  end_time = 2
  num_steps = 2
[]

[Outputs]
  exodus = true
  console = true
[]

test/tests/bcs/misc_bcs/weak_gradient_bc_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Functions]
  [./initial_value]
    type = ParsedFunction
    value = 'x'
  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = initial_value
    [../]
  [../]
[]

[Kernels]
  active = 'diff ie'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  active = 'left right top bottom'

  [./left]
    type = SinDirichletBC
    variable = u
    boundary = 3
    initial = 0.0
    final = 1.0
    duration = 10.0
  [../]

  [./right]
    type = SinDirichletBC
    variable = u
    boundary = 1
    initial = 1.0
    final = 0.0
    duration = 10.0
  [../]

  # Explicit Natural Boundary Conditions
  [./top]
    type = WeakGradientBC
    variable = u
    boundary = 2
  [../]

  [./bottom]
    type = WeakGradientBC
    variable = u
    boundary = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  num_steps = 10
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/interaction_integral/interaction_integral_3d_rot.i

#This tests the Interaction-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the Interaction-Integrals using options
#to treat it as 3d.

[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack3d_rot.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '0 0 -1'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_x
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_x
    boundary = 510
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_z
    boundary = 700
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = interaction_integral_3d_rot_out
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/except1.i

# Exception: incorrect userobject types
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = -0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]

modules/tensor_mechanics/test/tests/jacobian/cwp01.i

# Capped weak-plane plasticity
# checking jacobian for a fully-elastic situation
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 2
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 0
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1 2 3  2 -4 -5  3 -5 2'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 1
    smoothing_tol = 2
    yield_function_tol = 1E-10
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/multi/two_surface04.i

# Plasticit models:
# SimpleTester with a = 0 and b = 1 and strength = 1
# SimpleTester with a = 1 and b = 1 and strength = 2
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 4.0E-6m in y directions and 2.0E-6 in z direction.
# trial stress_zz = 2 and stress_yy = 4
#
# Then both  SimpleTesters should activate initially and return to the "corner" point
# (stress_zz = 1 = stress_yy), but then the plastic multiplier for SimpleTester1 will
# be negative, and so it will be deactivated, and the algorithm will return to
# stress_zz = 0, stress_yy = 2
# internal1 should be zero, internal2 should be 2

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '4E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '2E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
[]

[UserObjects]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 2
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = two_surface04
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/level_set/test/tests/verification/1d_level_set_supg_mms/1d_level_set_supg_mms.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 32
  nx = 64
[]

[Variables]
  [./phi]
  [../]
[]

[AuxVariables]
  [./v_x]
    initial_condition = 1
  [../]
[]

[ICs]
  [./phi_ic]
    function = phi_exact
    variable = phi
    type = FunctionIC
  [../]
[]

[Functions]
  [./phi_exact]
    type = ParsedFunction
    value = 'a*exp(1/(10*t))*sin(2*pi*x/b) + 1'
    vars = 'a b'
    vals = '1 8'
  [../]
  [./phi_mms]
    type = ParsedFunction
    value = '-a*exp(1/(10*t))*sin(2*pi*x/b)/(10*t^2) + 2*pi*a*exp(1/(10*t))*cos(2*pi*x/b)/b'
    vars = 'a b'
    vals = '1 8'
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = phi
  [../]
  [./time_supg]
    type = LevelSetTimeDerivativeSUPG
    variable = phi
    velocity_x = v_x
  [../]
  [./phi_advection]
    type = LevelSetAdvection
    variable = phi
    velocity_x = v_x
  [../]
  [./phi_forcing]
    type = BodyForce
    variable = phi
    function = phi_mms
  [../]
  [./phi_advection_supg]
    type = LevelSetAdvectionSUPG
    variable = phi
    velocity_x = v_x
  [../]
  [./phi_forcing_supg]
    type = LevelSetForcingFunctionSUPG
    velocity_x = v_x
    variable = phi
    function = phi_mms
  [../]
[]

[Postprocessors]
  [./error]
    type = ElementL2Error
    function = phi_exact
    variable = phi
  [../]
  [./h]
    type = AverageElementSize
  [../]
  [./point]
    type = PointValue
    point = '0.1 0 0'
    variable = phi
  [../]
[]

[Executioner]
  type = Transient
  start_time = 1
  dt = 0.01
  end_time = 1.25
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_sub_type'
  petsc_options_value = 'asm      ilu'
  scheme = bdf2
  nl_rel_tol = 1e-12
[]

[Outputs]
  interval = 10
  execute_on = 'timestep_end'
  csv = true
[]

test/tests/bcs/sin_bc/sin_neumann_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Functions]
  [./initial_value]
    type = ParsedFunction
    value = 'x'
  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

#    [./InitialCondition]
#      type = FunctionIC
 #     function = initial_value
#    [../]
  [../]
[]

[Kernels]
  active = 'diff ie'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  active = 'left right'

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]

  [./right]
    type = SinNeumannBC
    variable = u
    boundary = 1
    initial = 1.0
    final = 2.0
    duration = 10.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  num_steps = 10
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/flux_limited_TVD_advection/fltvd_2D.i

# Using Flux-Limited TVD Advection ala Kuzmin and Turek, with antidiffusion from superbee flux limiting
# 2D version
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  xmin = 0
  xmax = 1
  ny = 4
  ymin = 0
  ymax = 0.5
[]

[Variables]
  [./tracer]
  [../]
[]

[ICs]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass_dot]
    type = MassLumpedTimeDerivative
    variable = tracer
  [../]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = superbee
    u = tracer
    velocity = '0.1 0 0'
  [../]
[]

[BCs]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_tracer]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = right
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0.5 0'
    num_points = 11
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  nl_abs_tol = 1E-8
  nl_max_its = 500
  timestep_tolerance = 1E-3
[]

[Outputs]
  print_linear_residuals = false
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/phase_field/test/tests/misc/variablegradientmaterial.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 2
[]

[AuxVariables]
  [./c]
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0
      y1 = 0
      z1 = 0
      invalue = 1
      outvalue = 0
      radius = 0.7
      int_width = 0.5
    [../]
  [../]
[]

[Materials]
  [./var_grad]
    type = VariableGradientMaterial
    prop = grad_c
    variable = c
    outputs = exodus
  [../]
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  exodus = true
  execute_on = final
[]

modules/richards/test/tests/sinks/s04.i

# apply a total flux (in kg/s) to two boundaries
# and check that it removes the correct amount of fluid
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 3
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 4
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
  viscosity = 1E-3
  gravity = '-1 0 0'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.5
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
  [../]
[]

[ICs]
  [./pressure]
    type = ConstantIC
    variable = pressure
    value = 2
  [../]
[]

[Postprocessors]
  [./area_left]
    type = AreaPostprocessor
    boundary = left
    execute_on = initial
  [../]
  [./area_right]
    type = AreaPostprocessor
    boundary = right
    execute_on = initial
  [../]
  [./mass_fin]
    type = RichardsMass
    variable = pressure
    execute_on = 'initial timestep_end'
  [../]
  [./p0]
    type = PointValue
    point = '0 0 0'
    variable = pressure
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = left
    pressures = '0'
    bare_fluxes = '0.1'
    variable = pressure
    use_mobility = false
    use_relperm = false
    area_pp = area_left
  [../]
  [./right_flux]
    type = RichardsPiecewiseLinearSink
    boundary = right
    pressures = '0'
    bare_fluxes = '0.1'
    variable = pressure
    use_mobility = false
    use_relperm = false
    area_pp = area_right
  [../]
[]

[Kernels]
  active = 'richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 13
[]

[Outputs]
  file_base = s04
  csv = true
[]

modules/richards/test/tests/jacobian_2/jn18.i

# two phase
# almost gas saturated

# gravity = true
# supg = true
# transient = true


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -100.0
      max = -90.0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn18
  exodus = false
[]

test/tests/mesh/adapt/displaced_adapt_test.i

# Adaptivity on displaced problem
# - testing initial_refinement and adaptivity as well
#
# variables:
# - u and v_aux are used for displacing the problem
# - v is used to get some refinements
#

[Mesh]
  dim = 2
  file = square.e
  uniform_refine = 3
  displacements = 'u aux_v'
[]

[Functions]
  [./aux_v_fn]
    type = ParsedFunction
    value = x*(y-0.5)/5
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'udiff uie vdiff vconv vie'

  [./udiff]
    type = Diffusion
    variable = u
  [../]

  [./uie]
    type = TimeDerivative
    variable = u
  [../]

  [./vdiff]
    type = Diffusion
    variable = v
  [../]

  [./vconv]
    type = Convection
    variable = v
    velocity = '-10 1 0'
  [../]

  [./vie]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  active = 'uleft uright vleft vright'

  [./uleft]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./uright]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 0.1
  [../]

  [./vleft]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 1
  [../]

  [./vright]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 0
  [../]
[]

[AuxVariables]
  [./aux_v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./aux_k_1]
    type = FunctionAux
    variable = aux_v
    function = aux_v_fn
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 2
  dt = .1

  [./Adaptivity]
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
  [../]
[]

[Outputs]
  exodus = true
  [./displaced]
    type = Exodus
    use_displaced = true
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform19.i

# Using CappedMohrCoulomb with compressive failure only
# A single unit element is stretched in a complicated way
# that the trial stress is
#
#  -1.2 -2.0 -0.8
#  -2.0  4.4   0
#  -0.8   0   2.8
#
# This has eigenvalues
# la = {-1.963, 2.89478, 5.06822}
# and eigenvectors
# {0.94197, 0.296077, 0.158214}
# {-0.116245, -0.154456, 0.981137},
# {-0.314929, 0.942593, 0.111075},
#
# The compressive strength is 0.5 and Young=1 and Poisson=0.25.
# The return-map algorithm should return to stress_min = -0.5
# This is an increment of 1.463, so stress_mid and stress_max
# should both increase by 1.463 v/(1-v) = 0.488, giving
# stress_mid = 3.382
# stress_max = 5.556
#
# E_22 = E(1-v)/(1+v)/(1-2v)=1.2 and E_02 = E_22 v/(1-v)
# gamma_shear = ((smax-smin)^trial - (smax-smin)) / (E_22 - E_02)
# = ((2v-1)/(1-v)) * (smin^trial - smin) / (E_22(1 - 2v)/(1-v))
# = -(smin^trial - smin) / E_22
# Using psi = 30deg, sin(psi) = 1/2
# the shear correction to the tensile internal parameter is
# gamma_shear (E_22 + E_20) sin(psi) = gamma_shear E_22 sin(psi) / (1 - v)
# = -(smin^trial - smin) / (1 - v) / 2
# Then the tensile internal parameter is
# (1 - v) * (reduction_of_(max+min)_principal - gamma_shear * E_22 / (1-v) / 2) / E_22
# = -1.829
#
# The final stress is
#
# {0.15, -1.7, -0.65},
# {-1.7, 4.97, 0.046},
# {-0.65, 0.046, 3.3}

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-(3*x+2*y+z)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-(3*x-4*y)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-(x-2*z)'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.25
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.001
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform19
  csv = true
[]

modules/phase_field/test/tests/flood_counter_aux_test/nodal_flood_periodic_2var.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  nz = 0

  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./bubble_map0]
    order = FIRST
    family = LAGRANGE
  [../]

  [./bubble_map1]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./diffv]
    type = Diffusion
    variable = v
  [../]

  [./forcing_1]
    type = GaussContForcing
    variable = u
    x_center = 1.0
    y_center = 1.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_2]
    type = GaussContForcing
    variable = u
    x_center = 20.0
    y_center = 39.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_3]
    type = GaussContForcing
    variable = u
    x_center = 39.0
    y_center = 20.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_4]
    type = GaussContForcing
    variable = u
    x_center = 15.0
    y_center = 15.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_1v]
    type = GaussContForcing
    variable = v
    x_center = 8.0
    y_center = 8.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_2v]
    type = GaussContForcing
    variable = v
    x_center = 18.0
    y_center = 22.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_3v]
    type = GaussContForcing
    variable = v
    x_center = 39.0
    y_center = 20.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./forcing_4v]
    type = GaussContForcing
    variable = v
    x_center = 32.0
    y_center = 8.0
    x_spread = 0.5
    y_spread = 0.5
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]

  [./dotv]
    type = TimeDerivative
    variable = v
  [../]
[]

[AuxKernels]
  [./mapper0]
    type = FeatureFloodCountAux
    variable = bubble_map0
    execute_on = timestep_end
    flood_counter = bubbles
    map_index = 0
  [../]

  [./mapper1]
    type = FeatureFloodCountAux
    variable = bubble_map1
    execute_on = timestep_end
    flood_counter = bubbles
    map_index = 1
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = 'u v'
      auto_direction = 'x y'
    [../]
  [../]
[]

[UserObjects]
  [./bubbles]
    type = FeatureFloodCount
    variable = 'u v'
    threshold = 0.3
    execute_on = timestep_end
    use_single_map = false
    use_global_numbering = true
    outputs = none
    flood_entity_type = NODAL
  [../]
[]

[Executioner]
  type = Transient
  dt = 4.0
  num_steps = 5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_2var
  exodus = true
[]

test/tests/adaptivity/cycles_per_step/test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  initial_steps = 2
  steps = 1
  marker = marker
  initial_marker = marker
  max_h_level = 2
  [./Indicators]
    [./indicator]
      type = GradientJumpIndicator
      variable = u
    [../]
  [../]
  [./Markers]
    [./marker]
      type = ErrorFractionMarker
      indicator = indicator
      coarsen = 0.1
      refine = 0.7
    [../]
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/ad_power_law_creep/power_law_creep_simple.i

# 1x1x1 unit cube with uniform pressure on top face

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[AuxVariables]
  [./temp]
    initial_condition = 1000.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy creep_strain_xx creep_strain_yy creep_strain_zz elastic_strain_yy'
    use_automatic_differentiation = true
  [../]
[]
[BCs]
  [./u_top_fix]
    type = ADDirichletBC
    variable = disp_y
    boundary = top
    value = 1e-5
  [../]
  [./u_bottom_fix]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = ADDirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e11
    poissons_ratio = 0.3
  [../]
  [./radial_return_stress]
    type = ADComputeMultipleInelasticStress
    inelastic_models = 'power_law_creep'
  [../]
  [./power_law_creep]
    type = ADPowerLawCreepStressUpdate
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    temperature = temp
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  num_steps = 10
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/from_full_solve/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/LinearStrainHardening/sm/lsh_pressure_sm.i

#
# This test exercises the linear strain hardening material.  The mesh is
# taken from the patch test (7 elements, 1 on the interior).  There are
# symmetry bcs on three faces with a pressure load on another face.
#
# Young's modulus    = 2.4e5
# Yield stress       = 2.4e2
# Hardening constant = 1600
#
# The pressure reaches 2.4e2 at time 1 and 2.6e2 at time 2.  Thus, at
# time 1, the stress is at the yield stress.  2.4e2/2.4e5=0.001 (the
# strain at time 1).  The increase in stress from time 1 to time 2 is
# 20.  20/1600=0.0125 (the plastic strain).  The elastic strain at
# time 2 is 260/2.4e5=0.00108333.  The total strain at time 2 is
# 0.01358333.
#
[GlobalParams]
  volumetric_locking_correction = false
[]

[Mesh]
  file = lsh_pressure.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_mag]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0  1      2'
    y = '0 -2.4e2 -2.6e2'
  [../]

  [./dts]
    type = PiecewiseLinear
    x = '0    0.8 1   1.8'
    y = '0.8  0.2 0.8 0.2'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_yy
    index = 1
  [../]

  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]

  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]

  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]

  [./plastic_strain_mag]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = plastic_strain_mag
  [../]

 []


[BCs]

  [./Pressure]
    [./internal_pressure]
      boundary = 11
      function = top_pull
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
    [../]
  [../]

  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = 10
    value = 0.0
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 9
    value = 0.0
  [../]

  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 14
    value = 0.0
  [../]

[]

[Materials]
  [./constant]
    type = LinearStrainHardening
    block = '1 2 3 4 5 6 7'
    youngs_modulus = 2.4e5
    poissons_ratio = 0.3
    yield_stress = 2.4e2
    hardening_constant = 1600
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-6
  start_time = 0.0
  end_time = 2
  dt = 1.5e-3

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]



[Outputs]
  exodus = true
[]

python/peacock/tests/common/spherical_average.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 10
  nz = 10
  xmin = -5
  xmax = 5
  ymin = -5
  ymax = 5
  zmin = -5
  zmax = 5
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = sin(x*7.4+z*4.1)+cos(y*3.8+x*8.7)+sin(z*9.1+y*2.6)
    [../]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[VectorPostprocessors]
  [./average]
    type = SphericalAverage
    variable = c
    radius = 5
    bin_number = 10
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  solve_type = PJFNK
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  csv = true
[]

modules/solid_mechanics/test/tests/domain_integral_thermal/interaction_integral_2d_rot.i

#This problem from [Wilson 1979] tests the thermal strain term in the
#interaction integral
#
#theta_e = 10 degrees C; a = 252; E = 207000; nu = 0.3; alpha = 1.35e-5
#
#With uniform_refine = 3, KI converges to
#KI = 5.602461e+02 (interaction integral)
#KI = 5.655005e+02 (J-integral)
#
#Both are in good agreement with [Shih 1986]:
#average_value = 0.4857 = KI / (sigma_theta * sqrt(pi * a))
#sigma_theta = E * alpha * theta_e / (1 - nu)
# = 207000 * 1.35e-5 * 10 / (1 - 0.3) = 39.9214
#KI = average_value * sigma_theta * sqrt(pi * a) = 5.656e+02
#
#References:
#W.K. Wilson, I.-W. Yu, Int J Fract 15 (1979) 377-387
#C.F. Shih, B. Moran, T. Nakamura, Int J Fract 30 (1986) 79-102

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  volumetric_locking_correction = False
  displacements = 'disp_x disp_y'
[]

[Mesh]
  [file_mesh]
    type = FileMeshGenerator
    file = crack2d.e
  []
  [./rotate]
    type = TransformGenerator
    transform = ROTATE
    vector_value = '0 0 90'
    input = file_mesh
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*y/504)
  [../]
[]

[DomainIntegral]
  integrals = 'JIntegral InteractionIntegralKI'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '0 1 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  convert_J_to_K = true
  symmetry_plane = 0
  incremental = true

  # interaction integral parameters
  disp_x = disp_x
  disp_y = disp_y
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  temperature = temp
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]

  [./crack_x]
    type = DirichletBC
    variable = disp_x
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 400
    value = 0.0
  [../]

  [./no_y1]
    type = DirichletBC
    variable = disp_y
    boundary = 900
    value = 0.0
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1.35e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
    compute_InteractionIntegral = true
    temp = temp
    stress_free_temperature = 0.0

  [../]
[]


[Executioner]

  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 40

   nl_rel_step_tol= 1e-10
   nl_rel_tol = 1e-10


   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = interaction_integral_2d_rot_out
  exodus = true
  csv = true
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

modules/porous_flow/test/tests/chemistry/except21.i

# Exception test.
# Incorrect aqueous_phase_number

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_equilibrium = 2
    aqueous_phase_number = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
  [../]
  [./ppss_qp]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac_qp]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'a b'
    num_reactions = 2
    equilibrium_constants = '1E2 1E-2'
    primary_activity_coefficients = '1 1'
    secondary_activity_coefficients = '1 1'
    reactions = '2 0
                 1 1'
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/stochastic_tools/test/tests/vectorpostprocessors/multiple_stochastic_results/master.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sobol]
    type = SobolSampler
    num_rows = 3
    distributions = 'uniform_left uniform_right'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []
  [mc]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_left uniform_right'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []
[]

[MultiApps]
  [sobol]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sobol
  []
  [mc]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = mc
  []
[]

[Transfers]
  [sobol]
    type = SamplerParameterTransfer
    multi_app = sobol
    sampler = sobol
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
  []
  [sobol_data]
    type = SamplerPostprocessorTransfer
    multi_app = sobol
    sampler = sobol
    to_vector_postprocessor = storage
    from_postprocessor = avg
  []

  [mc]
    type = SamplerParameterTransfer
    multi_app = mc
    sampler = mc
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
  []
  [mc_data]
    type = SamplerPostprocessorTransfer
    multi_app = mc
    sampler = mc
    to_vector_postprocessor = storage
    from_postprocessor = avg
  []
[]

[VectorPostprocessors]
  [storage]
    type = StochasticResults
    parallel_type = REPLICATED
    samplers = 'sobol mc'
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  [out]
    type = CSV
    execute_on = FINAL
  []
[]

test/tests/geomsearch/2d_moving_penetration/pl_test3.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1.e-10
  l_max_its = 10

  start_time = 0.0
  dt = 0.0125
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test3_out
  exodus = true
[]

modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_second/finite.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    use_automatic_differentiation = true
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
  [../]
  [./plank]
    use_automatic_differentiation = true
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ADComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

test/tests/multiapps/multiple_position_files/sub1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_simple_linear/linear-mixed-reverse.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./stress_x]
    type = StressDivergenceTensors
    component = 0
    variable = disp_x
  [../]
  [./stress_y]
    type = StressDivergenceTensors
    component = 1
    variable = disp_y
  [../]
  [./stress_z]
    type = StressDivergenceTensors
    component = 2
    variable = disp_z
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeSmallStrain
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
  file_base = "linear-out"
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/glued_penalty_dirac.i

# This is a dirac (contact formulation) version of glued_penalty.i
[Mesh]
  file = blocks_2d_nogap.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.01
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e7
    poissons_ratio = 0.3
  [../]
  [./right]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = glued
    formulation = penalty
    penalty = 1e+7
    system = diracKernel
  [../]
[]

test/tests/controls/conditional_functional_enable/conditional_function_enable.i

# This tests controllability of the enable parameter of a MOOSE object via a
# conditional function.
#
# There are 2 scalar variables, {u, v}, with the ODEs:
#   du/dt = 1    u(0) = 0
#   v = u        v(0) = -10
# A control switches the ODE 'v = u' to the following ODE when u >= 1.99:
#   dv/dt = 2
#
# 5 time steps (of size dt = 1) will be taken, and the predicted values are as follows:
#      t     u     v
# ------------------
#      0     0   -10
#      1     1     1
#      2     2     2
#      3     3     4
#      4     4     6
#      5     5     8

u_initial = 0
u_growth = 1
u_threshold = 1.99

v_initial = -10
v_growth = 2

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [./u]
    family = SCALAR
    order = FIRST
  [../]
  [./v]
    family = SCALAR
    order = FIRST
  [../]
[]

[ICs]
  [./u_ic]
    type = ScalarConstantIC
    variable = u
    value = ${u_initial}
  [../]
  [./v_ic]
    type = ScalarConstantIC
    variable = v
    value = ${v_initial}
  [../]
[]

[ScalarKernels]
  [./u_time]
    type = ODETimeDerivative
    variable = u
  [../]
  [./u_src]
    type = ParsedODEKernel
    variable = u
    function = '-${u_growth}'
  [../]

  [./v_time]
    type = ODETimeDerivative
    variable = v
    enable = false
  [../]
  [./v_src]
    type = ParsedODEKernel
    variable = v
    function = '-${v_growth}'
    enable = false
  [../]
  [./v_constraint]
    type = ParsedODEKernel
    variable = v
    args = 'u'
    function = 'v - u'
  [../]
[]

[Functions]
  [./conditional_function]
    type = ParsedFunction
    vars = 'u_sol'
    vals = 'u'
    value = 'u_sol >= ${u_threshold}'
  [../]
[]

[Controls]
  [./u_threshold]
    type = ConditionalFunctionEnableControl
    conditional_function = conditional_function
    enable_objects = 'ScalarKernel::v_time ScalarKernel::v_src'
    disable_objects = 'ScalarKernel::v_constraint'
    execute_on = 'INITIAL TIMESTEP_END'
  [../]
[]

[Executioner]
  type = Transient
  scheme = implicit-euler
  dt = 1
  num_steps = 5
  abort_on_solve_fail = true

  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
[]

[Outputs]
  csv = true
[]

modules/richards/test/tests/broadbridge_white/bw_lumped_02.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 200
  ny = 1
  xmin = -10
  xmax = 10
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermBW
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffBW
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-1 5E-1 5E-1'
    x = '0 1 10'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 10
    bulk_mod = 2E9
  [../]
  [./SeffBW]
    type = RichardsSeff1BWsmall
    Sn = 0.0
    Ss = 1.0
    C = 1.5
    las = 2
  [../]
  [./RelPermBW]
    type = RichardsRelPermBW
    Sn = 0.0
    Ss = 1.0
    Kn = 0
    Ks = 1
    C = 1.5
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E2
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -9E2
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsLumpedMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffBW
    pressure_vars = pressure
  [../]
[]


[BCs]
  active = 'recharge'
  [./recharge]
    type = RichardsPiecewiseLinearSink
    variable = pressure
    boundary = 'right'
    pressures = '-1E10 1E10'
    bare_fluxes = '-1.25 -1.25' # corresponds to Rstar being 0.5 because i have to multiply by density*porosity
    use_mobility = false
    use_relperm = false
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.25
    mat_permeability = '1 0 0  0 1 0  0 0 1'
    viscosity = 4
    gravity = '-0.1 0 0'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 2

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]


[Outputs]
  file_base = bw_lumped_02
  interval = 10000
  execute_on = 'timestep_end final'
  exodus = true
[]

modules/tensor_mechanics/test/tests/dynamics/time_integration/hht_test.i

# Test for  HHT time integration

# The test is for an 1D bar element of  unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# alpha, beta and gamma are HHT time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel + alpha*(K*disp - K*disp_old) + K*disp = P(t+alpha dt)*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + alpha*(Div stress - Div stress_old) +Div Stress= P(t+alpha dt)
#
# The first term on the left is evaluated using the Inertial force kernel
# The next two terms on the left involving alpha are evaluated using the
# DynamicStressDivergenceTensors Kernel
# The residual due to Pressure is evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure becomes constant.
# Alpha equal to zero will result in Newmark integration.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./DynamicTensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    alpha = 0.11
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 0
    index_j = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = bottom
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
      factor = 1
      alpha = 0.11
    [../]
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '210e9 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 2
  dt = 0.1
[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp]
    type = NodalMaxValue
    variable = disp_y
    boundary = bottom
  [../]
  [./vel]
    type = NodalMaxValue
    variable = vel_y
    boundary = bottom
  [../]
  [./accel]
    type = NodalMaxValue
    variable = accel_y
    boundary = bottom
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/combined/test/tests/power_law_creep/creep_only_combined_class_sm1.i

#
# Simple power law creep example (without instantaneous plasticity).
# NOTE: this test is not replicated in a direct tensor mechanics form because the functioning
#   of the individual TM power law creep and TM isotropic plasticity is already tested in the
#   tensor mechanics module.
#
# The mesh is a 1x1x1 cube with a constant pressure of 10 MPa on the top face.
#   Symmetry boundary conditions on three planes provide a uniaxial stress
#   field. The temperature is held constant at 1000. The yield stress is set
#   at twice the load pressure, thus there is no plasticity.  The solution is
#   advanced through ten time steps of 0.1 for a total time of 1.
#
#   The total strain at time 1 can be computed as:
#
#    e_tot = e_elas + e_creep
#
#           = P/E   + A * sigma**n * exp(-Q/(RT)) * t**m * dt
#
#              where P = pressure load
#                    E = Young's modulus
#                    A = material parameter
#                    sigma = stress
#                    n = power law exponent
#                    Q = activation energy
#               R = gas constant
#                    T = temperature
#                    t = time
#                    m = time hardening exponent
#                    dt = problem time
#
# For this test, the analytical solutuon is:
#
#   e_tot = (10e6/2e11) + 1e-15 * (10e6)**4 * exp(-3e5/(8.3143*1000) * t**0 * 1
#         = 5e-5        + 2.136031e-3
#         = 2.186031e-3
#
#
#  For either linear (formulation = linear) or nonlinear (formulation = nonlinear3d)
#    kinematics, PLC_LSH gets:
#
#  e_elas = 5e-5
#  e_creep = 2.13600e-3
#  e_tot = 2.18600e-3
#
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'x_disp y_disp z_disp'
[]

[Variables]
  [./x_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./y_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./z_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./creep_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = x_disp
    disp_y = y_disp
    disp_z = z_disp
  [../]
[]

[Kernels]
  [./solid_x_ie]
    type = SolidMechImplicitEuler
    variable = x_disp
  [../]

  [./solid_y_ie]
    type = SolidMechImplicitEuler
    variable = y_disp
  [../]

  [./solid_z_ie]
    type = SolidMechImplicitEuler
    variable = z_disp
  [../]

  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]
[]


[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./creep_strain_xx]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_xx
    index = 0
  [../]

  [./creep_strain_yy]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_yy
    index = 1
  [../]


  [./creep_strain_zz]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_zz
    index = 2
  [../]

  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]

 []


[BCs]
  [./u_top_pull]
    type = Pressure
    variable = y_disp
    component = 1
    boundary = top
    factor = -10.0e6
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = y_disp
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = x_disp
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'top bottom'
    value = 1000.0
  [../]
[]

[Materials]

  [./creep]
    type = PLC_LSH
    block = 0
    youngs_modulus = 2.e11
    poissons_ratio = .3
    yield_stress = 20e6
    hardening_constant = 10000
    coefficient = 1.0e-15
    n_exponent = 4
    m_exponent = 0
    activation_energy = 3.0e5
    relative_tolerance = 1.e-8
    formulation = nonlinear3d
    max_its = 100
    disp_x = x_disp
    disp_y = y_disp
    disp_z = z_disp
    temp = temp
  [../]

  [./thermal]
    type = HeatConductionMaterial
    block = 0
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]

  [./density]
    type = Density
    block = 0
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'


  l_max_its = 10
  nl_max_its = 10
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.0
  num_steps = 10
  dt = 0.1
[]

[Outputs]
  file_base = creep_only_combined_class_sm_out
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/crystal_plasticity/crysp.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./rotout]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./gss1]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss1
    property = gss
    index = 0
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCrystalPlasticity
    block = 0
    gtol = 1e-2
    slip_sys_file_name = input_slip_sys.txt
    nss = 12
    num_slip_sys_flowrate_props = 2 #Number of properties in a slip system
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    hprops = '1.0 541.5 60.8 109.8 2.5'
    gprops = '1 4 60.8 5 8 60.8 9 12 60.8'
    tan_mod_type = exact
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'ux uy uz'
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./gss1]
    type = ElementAverageValue
    variable = gss1
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 0.05
  dtmax = 10.0
  dtmin = 0.05

  num_steps = 10
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/predictors/simple/predictor_skip_old_test.i

# The purpose of this test is to test the simple predictor.  This is a very
# small, monotonically loaded block of material.  If things are working right,
# the predictor should come very close to exactly nailing the solution on steps
# after the first step.

#This test checks to see that the predictor is skipped in the last step.

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 3
  ny = 3
[]

[Functions]
  [./ramp1]
    type = ParsedFunction
    value = 't'
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./bot]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 0.0
  [../]
  [./ss2_x]
    type = FunctionDirichletBC
    variable = u
    boundary = top
    function = ramp1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-14

  start_time = 0.0
  dt = 0.5
  end_time = 1.5

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
    skip_times_old = '1.0'
  [../]
[]

[Postprocessors]
  [./final_residual]
    type = Residual
    residual_type = final
  [../]
  [./initial_residual_before]
    type = Residual
    residual_type = initial_before_preset
  [../]
  [./initial_residual_after]
    type = Residual
    residual_type = initial_after_preset
  [../]
[]

[Outputs]
  csv = true
[]

test/tests/time_integrators/actually_explicit_euler_verification/ee-2d-linear-adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = (x+y)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*(x+y)
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Adaptivity]
  steps = 1
  marker = box
  max_h_level = 2
  [./Markers]
    [./box]
      bottom_left = '-0.4 -0.4 0'
      inside = refine
      top_right = '0.4 0.4 0'
      outside = do_nothing
      type = BoxMarker
    [../]
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  start_time = 0.0
  num_steps = 4
  dt = 0.005
  l_tol = 1e-12

  [./TimeIntegrator]
    type = ActuallyExplicitEuler
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/porous_flow/test/tests/jacobian/fflux09.i

# 2phase (PP), 3components (that exist in both phases), constant viscosity, constant insitu permeability
# density with constant bulk, Corey relative perm, nonzero gravity, unsaturated with RSC capillary
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp1]
  [../]
  [./massfrac_ph1_sp0]
  [../]
  [./massfrac_ph1_sp1]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph0_sp1]
    type = RandomIC
    variable = massfrac_ph0_sp1
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph1_sp1]
    type = RandomIC
    variable = massfrac_ph1_sp1
    min = 0
    max = 0.4
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
    gravity = '-1 -0.1 0'
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = ppgas
    gravity = '-1 -0.1 0'
  [../]
  [./flux2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 2
    variable = massfrac_ph0_sp0
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas massfrac_ph0_sp0'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureRSC
    shift = -0.1
    scale_ratio = 3
    oil_viscosity = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/porous_flow/test/tests/flux_limited_TVD_pflow/jacobian_01.i

# Checking the Jacobian of Flux-Limited TVD Advection, 1 phase, 1 component, full saturation, using flux_limiter_type = none
# This is quite a heavy test, but we need a fairly big mesh to check the upwinding is happening correctly
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  xmin = 0
  xmax = 1
  ny = 4
  ymin = -1
  ymax = 2
  bias_y = 1.5
  nz = 4
  zmin = 1
  zmax = 2
  bias_z = 0.8
[]

[GlobalParams]
  gravity = '1 2 -0.5'
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
[]


[ICs]
  [./pp]
    variable = pp
    type = RandomIC
    min = 1
    max = 2
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = pp
    advective_flux_calculator = advective_flux_calculator
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.4
      viscosity = 1.1
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
  [./advective_flux_calculator]
    type = PorousFlowAdvectiveFluxCalculatorSaturated
    flux_limiter_type = None
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.21 0 0  0 1.5 0  0 0 0.8'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
  num_steps = 1
  dt = 1
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform7.i

# Plastic deformation, tensile with hardening
# With Lame lambda=0 and Lame mu=1, applying the following
# deformation to the zmax surface of a unit cube:
# disp_z = t
# should yield trial stress:
# stress_zz = 2*t
# The tensile strength varies as a cubic between 1 (at intnl=0)
# and 2 (at intnl=1).  The equation to solve is
# 2 - Ezzzz * ga = -2 * (ga - 1/2)^3 + (3/2) (ga - 1/2) + 3/2
# where the left-hand side comes from p = p_trial - ga * Ezzzz
# and the right-hand side is the cubic tensile strength
# The solution is ga = 0.355416 ( = intnl[1]), and the cubic
# is 1.289168 ( = p) at that point
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 0
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = t
  [../]
[]

[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 20
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 2
    internal_limit = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 5
    smoothing_tol = 5
    yield_function_tol = 1E-10
  [../]
[]

[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform7
  csv = true
[]

modules/chemical_reactions/test/tests/solid_kinetics/calcite_precipitation.i

# Example of batch reaction of calcium (Ca++) and bicarbonate (HCO3-) precipitation
# to form calcite (CaCO3).
#
# The reaction network considered is as follows:
# Aqueous equilibrium reactions:
# a)  H+ + HCO3- = CO2(aq),             Keq = 10^(6.341)
# b)  HCO3- = H+ + CO3--,               Keq = 10^(-10.325)
# c)  Ca++ + HCO3- = H+ + CaCO3(aq),    Keq = 10^(-7.009)
# d)  Ca++ + HCO3- = CaHCO3+,           Keq = 10^(-0.653)
# e)  Ca++ = H+ + CaOh+,                Keq = 10^(-12.85)
# f)  - H+ = OH-,                       Keq = 10^(-13.991)
#
# Kinetic reactions
# g)  Ca++ + HCO3- = H+ + CaCO3(s),     A = 0.461 m^2/L, k = 6.456542e-2 mol/m^2 s,
#                                       Keq = 10^(1.8487)
#
# The primary chemical species are H+, HCO3- and Ca++.

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./ca++]
    initial_condition = 2.0e-2
  [../]
  [./h+]
    initial_condition = 1.0e-8
  [../]
  [./hco3-]
    initial_condition = 1.0e-2
  [../]
[]

[AuxVariables]
  [./caco3_s]
  [../]
  [./ph]
  [../]
[]

[AuxKernels]
  [./ph]
    type = PHAux
    h_conc = h+
    variable = ph
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = 'ca++ hco3- h+'
    secondary_species = 'co2_aq co3-- caco3_aq cahco3+ caoh+ oh-'
    reactions = 'h+ + hco3- = co2_aq 6.3447,
                 hco3- - h+ = co3-- -10.3288,
                 ca++ + hco3- - h+ = caco3_aq -7.0017,
                 ca++ + hco3- = cahco3+ -1.0467,
                 ca++ - h+ = caoh+ -12.85,
                 - h+ = oh- -13.9951'
  [../]
  [./SolidKineticReactions]
    primary_species = 'ca++ hco3- h+'
    kin_reactions = 'ca++ + hco3- - h+ = caco3_s'
    secondary_species = caco3_s
    log10_keq = 1.8487
    reference_temperature = 298.15
    system_temperature = 298.15
    gas_constant = 8.314
    specific_reactive_surface_area = 0.1
    kinetic_rate_constant = 1e-6
    activation_energy = 1.5e4
  [../]
[]

[Kernels]
  [./ca++_ie]
    type = PrimaryTimeDerivative
    variable = ca++
  [../]
  [./h+_ie]
    type = PrimaryTimeDerivative
    variable = h+
  [../]
  [./hco3-_ie]
    type = PrimaryTimeDerivative
    variable = hco3-
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'porosity diffusivity'
    prop_values = '0.25 1e-9'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  end_time = 100
  dt = 10
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./h+]
    type = ElementIntegralVariablePostprocessor
    variable = h+
    execute_on = 'initial timestep_end'
  [../]
  [./ca++]
    type = ElementIntegralVariablePostprocessor
    variable = ca++
    execute_on = 'initial timestep_end'
  [../]
  [./hco3-]
    type = ElementIntegralVariablePostprocessor
    variable = hco3-
    execute_on = 'initial timestep_end'
  [../]
  [./co2_aq]
    type = ElementIntegralVariablePostprocessor
    variable = co2_aq
    execute_on = 'initial timestep_end'
  [../]
  [./oh-]
    type = ElementIntegralVariablePostprocessor
    variable = oh-
    execute_on = 'initial timestep_end'
  [../]
  [./co3--]
    type = ElementIntegralVariablePostprocessor
    variable = co3--
    execute_on = 'initial timestep_end'
  [../]
  [./caco3_aq]
    type = ElementIntegralVariablePostprocessor
    variable = caco3_aq
    execute_on = 'initial timestep_end'
  [../]
  [./caco3_s]
    type = ElementIntegralVariablePostprocessor
    variable = caco3_s
    execute_on = 'initial timestep_end'
  [../]
  [./ph]
    type = ElementIntegralVariablePostprocessor
    variable = ph
    execute_on = 'initial timestep_end'
  [../]
  [./calcite_vf]
    type = TotalMineralVolumeFraction
    variable = caco3_s
    molar_volume = 36.934e-6
  [../]
[]

[Outputs]
  perf_graph = true
  csv = true
[]

modules/combined/test/tests/sliding_block/sliding/dirac/sm/frictionless_penalty_sm.i

#  This is a benchmark test that checks Dirac based frictionless
#  contact using the penalty method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
    order = FIRST
    family = LAGRANGE
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.05
  end_time = 10
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_1/cyl1_template1.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl1_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/tensor_mechanics/test/tests/drucker_prager/small_deform2_lode_zero.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1.5E-6*x+2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./mc]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    smoother = 4
    mc_interpolation_scheme = lode_zero
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_lode_zero
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/crystal_plasticity/crysp_substep.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./rotout]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./gss1]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss1
    property = gss
    index = 0
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCrystalPlasticity
    block = 0
    gtol = 1e-2
    slip_sys_file_name = input_slip_sys.txt
    nss = 12
    num_slip_sys_flowrate_props = 2 #Number of properties in a slip system
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    hprops = '1.0 541.5 60.8 109.8 2.5'
    gprops = '1 4 60.8 5 8 60.8 9 12 60.8'
    tan_mod_type = exact
    gen_random_stress_flag = false
    maximum_substep_iteration = 2
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'ux uy uz'
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./gss1]
    type = ElementAverageValue
    variable = gss1
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 0.5
  dtmax = 10.0
  dtmin = 0.5

  num_steps = 3
[]

[Outputs]
  file_base = crysp_substep_out
  exodus = true
  csv = true
  gnuplot = true
[]

modules/combined/test/tests/mortar_tm/2d/frictionless_second/finite_noaction.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_noaction'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]

  [./slave]
    input = block_sidesets
    type = LowerDBlockFromSidesetGenerator
    sidesets = 'block_left'
    new_block_id = '30'
    new_block_name = 'frictionless_slave_subdomain'
  [../]
  [./master]
    input = slave
    type = LowerDBlockFromSidesetGenerator
    sidesets = 'plank_right'
    new_block_id = '20'
    new_block_name = 'frictionless_master_subdomain'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./frictionless_normal_lm]
    order = ${order}
    block = 'frictionless_slave_subdomain'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
  [../]
[]

[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = block_left
    master = plank_right
    variable = frictionless_normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = min
    use_displaced_mesh = true
  [../]
  [./normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = plank_right
    slave_boundary = block_left
    master_subdomain = frictionless_master_subdomain
    slave_subdomain = frictionless_slave_subdomain
    variable = frictionless_normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  [../]
  [./normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = plank_right
    slave_boundary = block_left
    master_subdomain = frictionless_master_subdomain
    slave_subdomain = frictionless_slave_subdomain
    variable = frictionless_normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/combined/test/tests/normalized_penalty/normalized_penalty_Q8.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = normalized_penalty_Q8.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Functions]
  [./left_x]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 0.02 0'
  [../]
[]
[AuxVariables]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx'
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  []
[]

[Contact]
  [./m3_s2]
    master = 3
    slave = 2
    penalty = 1e10
    normalize_penalty = true
    formulation = penalty
    tangential_tolerance = 1e-3
    system = Constraint
  [../]
[]

[BCs]
  [./left_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = left_x
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2 3 4'
    value = 0.0
  [../]

  [./right]
    type = DirichletBC
    variable = disp_x
    boundary = '3 4'
    value = 0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2 3 4 1000'
    youngs_modulus = 3e8
    poissons_ratio = 0.0
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2 3 4 1000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-12
  nl_abs_tol = 5e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 0.5
  num_steps = 4
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/static_deformations/cosserat_tension.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 2
    ny = 2
    nz = 2
    zmax = 0.2
  []
  [bottom_xline1]
    type = ExtraNodesetGenerator
    new_boundary = 101
    coord = '0 0 0'
    input = generated_mesh
  []
  [bottom_xline2]
    type = ExtraNodesetGenerator
    new_boundary = 101
    coord = '0.5 0 0'
    input = bottom_xline1
  []
  [bottom_xline3]
    type = ExtraNodesetGenerator
    new_boundary = 101
    coord = '1 0 0'
    input = bottom_xline2
  []
  [bottom_zline1]
    type = ExtraNodesetGenerator
    new_boundary = 102
    coord = '0 0 0.0'
    input = bottom_xline3
  []
  [bottom_zline2]
    type = ExtraNodesetGenerator
    new_boundary = 102
    coord = '0 0 0.1'
    input = bottom_zline1
  []
  [bottom_zline3]
    type = ExtraNodesetGenerator
    new_boundary = 102
    coord = '0 0 0.2'
    input = bottom_zline2
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Postprocessors]
  [./disp_y_top]
    type = PointValue
    point = '0.5 1 0.1'
    variable = disp_y
  [../]
  [./wc_z_top]
    type = PointValue
    point = '0.5 1 0.1'
    variable = wc_z
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./z_couple]
    type = StressDivergenceTensors
    variable = wc_z
    displacements = 'wc_x wc_y wc_z'
    component = 2
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
  [./z_moment]
    type = MomentBalancing
    variable = wc_z
    component = 2
  [../]
[]

[BCs]
  [./y_bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]

  [./x_line]
    type = DirichletBC
    variable = disp_z
    boundary = 101
    value = 0
  [../]
  [./z_line]
    type = DirichletBC
    variable = disp_x
    boundary = 102
    value = 0
  [../]

  [./wc_x_bottom]
    type = DirichletBC
    variable = wc_x
    boundary = bottom
    value = 0
  [../]
  [./wc_y_bottom]
    type = DirichletBC
    variable = wc_y
    boundary = bottom
    value = 0
  [../]
  [./wc_z_bottom]
    type = DirichletBC
    variable = wc_z
    boundary = bottom
    value = 0
  [../]
  [./top_force]
    type = NeumannBC
    variable = disp_y
    boundary = top
    value = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeCosseratElasticityTensor
    B_ijkl = 0.5
    E_ijkl = '1 2 1.3333'
    fill_method = 'general_isotropic'
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol'
    petsc_options_value = 'gmres bjacobi 1E-10 1E-10 10 1E-15 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = cosserat_tension_out
  exodus = true
[]

modules/richards/test/tests/dirac/bh05.i

# unsaturated
# injection
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '500 500 1E1'
    x = '4000 5000 6500'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh03.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = -1
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = -2E5
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]

[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-12 0 0  0 1E-12 0  0 0 1E-12'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 6500
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  file_base = bh05
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/combined/test/tests/sliding_block/sliding/dirac/frictional_02_penalty.i

#  This is a benchmark test that checks Dirac based frictional
#  contact using the penalty method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  A friction coefficient of 0.2 is used.  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./stiffStuff]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]  # Materials

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  # petsc_options_iname = '-pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter -ksp_gmres_restart'
  # petsc_options_value = 'hypre    boomeramg  4    101'

  nl_abs_tol = 1e-7
  l_max_its = 200
  nl_max_its = 1000
  dt = 0.05
  end_time = 10
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    formulation = penalty
    friction_coefficient = 0.2
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/chemical_reactions/test/tests/desorption/langmuir_desorption.i

# testing the entire desorption DEs
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = 0
  xmax = 1
[]

[Variables]
  [./pressure]
  [../]
  [./conc]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./p_ic]
    type = ConstantIC
    variable = pressure
    value = 1.0
  [../]
  [./conc_ic]
    type = ConstantIC
    variable = conc
    value = 1.0
  [../]
[]


[Kernels]
  [./c_dot]
    type = TimeDerivative
    variable = conc
  [../]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    variable = conc
    pressure_var = pressure
  [../]
  [./rho_dot]
    type = TimeDerivative
    variable = pressure
  [../]
  [./flux_to_porespace]
    type = DesorptionToPorespace
    variable = pressure
    conc_var = conc
  [../]
[]

[Postprocessors]
  [./mass_rho]
    type = ElementIntegralVariablePostprocessor
    block = 0
    variable = pressure
    execute_on = 'initial timestep_end'
  [../]
  [./mass_conc]
    type = ElementIntegralVariablePostprocessor
    block = 0
    variable = conc
    execute_on = 'initial timestep_end'
  [../]
  [./mass_tot]
    type = FunctionValuePostprocessor
    function = mass_fcn
    execute_on = 'initial timestep_end'
  [../]
  [./p0]
    type = PointValue
    variable = pressure
    point = '0 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./c0]
    type = PointValue
    variable = conc
    point = '0 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Functions]
  [./mass_fcn]
    type = ParsedFunction
    value = a+b
    vars = 'a b'
    vals = 'mass_rho mass_conc'
  [../]
[]

[Materials]
  [./lang_stuff]
    type = LangmuirMaterial
    block = 0
    one_over_desorption_time_const = 0.90909091
    one_over_adsorption_time_const = 0.90909091
    langmuir_density = 0.88
    langmuir_pressure = 1.23
    pressure_var = pressure
    conc_var = conc
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.01
  end_time = 2
[]
[Outputs]
  file_base = langmuir_desorption
  interval = 10
  exodus = true
  csv = 10
[] # Outputs

test/tests/transfers/multiapp_postprocessor_interpolation_transfer/multilevel_subsub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./subsub_average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_3d.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack3d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  output_variable = 'disp_x'
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]


[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Postprocessors]
  [./disp_x_centercrack]
    type = CrackFrontData
    crack_front_definition = crackFrontDefinition
    variable = disp_x
    crack_front_point_index = 1
  [../]
[]

[Outputs]
  file_base = j_integral_3d_out
  exodus = true
  csv = true
[]

modules/combined/test/tests/sliding_block/in_and_out/dirac/frictionless_penalty.i

#  This is a benchmark test that checks Dirac based frictionless
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2. The gold file is run
#  on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./constitutive]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  file_base = frictionless_penalty_out
  interval = 10
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

test/tests/transfers/multiapp_nearest_node_transfer/boundary_tomaster_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  elem_type = QUAD8
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = top
    value = 0.0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1.0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-fb-lm-mortar-disp.i

starting_point = 2e-1
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
  scaling = 1e0
[]

[Mesh]
  file = long-bottom-block-1elem-blocks.e
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
  [./normal_lm]
    block = 3
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = 10
    master = 20
    variable = normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = 'fb'
  [../]
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  active = 'num_nl cumulative contact'
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '3'
    execute_on = 'nonlinear timestep_end'
  []
[]

test/tests/geomsearch/3d_moving_penetration/pl_test3.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test3_out
  exodus = true
[]

test/tests/geomsearch/2d_moving_penetration/pl_test3qtt.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.09
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.09
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test3qtt_out
  exodus = true
[]

test/tests/multiapps/picard_catch_up_keep_solution/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = 'v'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 'left'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_abs_tol = 1e-14
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = 'sub.i'
    max_catch_up_steps = 100
    max_failures = 100
    catch_up = true
    keep_solution_during_restore = true
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

test/tests/geomsearch/2d_moving_penetration/pl_test3q.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1.e-10
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test3q_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update18.i

# MC update version, with only Compressive with compressive strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0
    internal_limit = 2E-3
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-2 1 -0.5  -1 -1.9 0  -0.5 0 -3'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/porous_flow/test/tests/jacobian/desorped_mass_vol_exp01.i

# Tests the PorousFlowDesorpedMassVolumetricExpansion kernel
# Fluid with constant bulk modulus, van-Genuchten capillary, HM porosity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = 0
  PorousFlowDictator = dictator
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
  [./conc]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./disp_y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./disp_z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
  [./p]
    type = RandomIC
    min = -1
    max = 1
    variable = porepressure
  [../]
  [./conc]
    type = RandomIC
    min = 0
    max = 1
    variable = conc
  [../]
[]

[BCs]
  # necessary otherwise volumetric strain rate will be zero
  [./disp_x]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./disp_y]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'left right'
  [../]
  [./disp_z]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'left right'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./poro]
    type = PorousFlowMassVolumetricExpansion
    fluid_component = 0
    variable = porepressure
  [../]
  [./conc_in_poro]
    type = PorousFlowDesorpedMassVolumetricExpansion
    conc_var = conc
    variable = porepressure
  [../]
  [./conc]
    type = PorousFlowDesorpedMassVolumetricExpansion
    conc_var = conc
    variable = conc
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z conc'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '2 3'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.1
    biot_coefficient = 0.5
    solid_bulk = 1
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jacobian2
  exodus = false
[]

modules/porous_flow/examples/tutorial/04.i

# Darcy flow with heat advection and conduction, and elasticity
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
    input = annular
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  biot_coefficient = 1.0
[]

[Variables]
  [./porepressure]
  [../]
  [./temperature]
    initial_condition = 293
    scaling = 1E-8
  [../]
  [./disp_x]
    scaling = 1E-10
  [../]
  [./disp_y]
    scaling = 1E-10
  [../]
  [./disp_z]
    scaling = 1E-10
  [../]
[]

[PorousFlowBasicTHM]
  porepressure = porepressure
  temperature = temperature
  coupling_type = ThermoHydroMechanical
  gravity = '0 0 0'
  fp = the_simple_fluid
  thermal_eigenstrain_name = thermal_contribution
  use_displaced_mesh = false
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1E6
    boundary = injection_area
  [../]
  [./constant_injection_temperature]
    type = DirichletBC
    variable = temperature
    value = 313
    boundary = injection_area
  [../]

  [./roller_tmax]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = dmax
  [../]
  [./roller_tmin]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = dmin
  [../]
  [./roller_top_bottom]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'top bottom'
  [../]
  [./cavity_pressure_x]
    type = Pressure
    boundary = injection_area
    variable = disp_x
    component = 0
    factor = 1E6
    use_displaced_mesh = false
  [../]
  [./cavity_pressure_y]
    type = Pressure
    boundary = injection_area
    variable = disp_y
    component = 1
    factor = 1E6
    use_displaced_mesh = false
  [../]
[]

[AuxVariables]
  [./stress_rr]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_pp]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./stress_rr]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = stress_rr
    scalar_type = RadialStress
    point1 = '0 0 0'
    point2 = '0 0 1'
  [../]
  [./stress_pp]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = stress_pp
    scalar_type = HoopStress
    point1 = '0 0 0'
    point2 = '0 0 1'
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      viscosity = 1.0E-3
      density0 = 1000.0
      thermal_expansion = 0.0002
      cp = 4194
      cv = 4186
      porepressure_coefficient = 0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    solid_bulk_compliance = 2E-7
    fluid_bulk_modulus = 1E7
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1E-14 0 0   0 1E-14 0   0 0 1E-14'
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityConst
    block = caps
    permeability = '1E-15 0 0   0 1E-15 0   0 0 1E-16'
  [../]

  [./thermal_expansion]
    type = PorousFlowConstantThermalExpansionCoefficient
    drained_coefficient = 0.003
    fluid_coefficient = 0.0002
  [../]
  [./rock_internal_energy]
    type = PorousFlowMatrixInternalEnergy
    density = 2500.0
    specific_heat_capacity = 1200.0
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '10 0 0  0 10 0  0 0 10'
    block = 'caps aquifer'
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 5E9
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeSmallStrain
    eigenstrain_names = thermal_contribution
  [../]
  [./thermal_contribution]
    type = ComputeThermalExpansionEigenstrain
    temperature = temperature
    thermal_expansion_coeff = 0.001 # this is the linear thermal expansion coefficient
    eigenstrain_name = thermal_contribution
    stress_free_temperature = 293
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E5
  nl_abs_tol = 1E-15
  nl_rel_tol = 1E-14
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/rigidbodymotion/update_orientation.i

# test file for applyting advection term and observing rigid body motion of grains
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 15
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    args = eta
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = eta
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
  [./eta_dot]
    type = TimeDerivative
    variable = eta
  [../]
  [./vadv_eta]
    type = SingleGrainRigidBodyMotion
    variable = eta
    c = c
    v = eta
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
  [./acint_eta]
    type = ACInterface
    variable = eta
    mob_name = M
    args = c
    kappa_name = kappa_eta
  [../]
  [./acbulk_eta]
    type = AllenCahn
    variable = eta
    mob_name = M
    f_name = F
    args = c
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '5.0  2.0      0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    args = 'c eta'
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+(c-eta)^2
    derivative_order = 2
  [../]
[]

[AuxVariables]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./centroids]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vadv_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vadv_y]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./angle_initial]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./euler_angle]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_center
    field_display = UNIQUE_REGION
    execute_on = timestep_begin
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_center
    field_display = VARIABLE_COLORING
    execute_on = timestep_begin
  [../]
  [./centroids]
    type = FeatureFloodCountAux
    variable = centroids
    execute_on = timestep_begin
    field_display = CENTROID
    flood_counter = grain_center
  [../]
  [./vadv_x]
    type = GrainAdvectionAux
    grain_force = grain_force
    grain_volumes = grain_volumes
    grain_tracker_object = grain_center
    execute_on = timestep_begin
    component = x
    variable = vadv_x
  [../]
  [./vadv_y]
    type = GrainAdvectionAux
    grain_force = grain_force
    grain_volumes = grain_volumes
    grain_tracker_object = grain_center
    execute_on = timestep_begin
    component = y
    variable = vadv_y
  [../]
  [./angle_initial]
    type = OutputEulerAngles
    variable = angle_initial
    euler_angle_provider = euler_angle_initial
    grain_tracker = grain_center
    output_euler_angle = phi2
    execute_on = timestep_begin
  [../]
  [./angle]
    type = OutputEulerAngles
    variable = euler_angle
    euler_angle_provider = euler_angle
    grain_tracker = grain_center
    output_euler_angle = phi2
    execute_on = timestep_begin
  [../]
[]


[VectorPostprocessors]
  [./forces]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    variable = eta
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force]
    type = ConstantGrainForceAndTorque
    execute_on = 'initial timestep_begin linear nonlinear'
    force = '0.5 0.0 0.0 '
    torque = '0.0 0.0 10.0'
  [../]
  [./euler_angle_initial]
    type = RandomEulerAngleProvider
    grain_tracker_object = grain_center
    execute_on = 'initial timestep_begin'
  [../]
  [./euler_angle]
    type = EulerAngleUpdater
    grain_tracker_object = grain_center
    euler_angle_provider = euler_angle_initial
    grain_torques_object = grain_force
    grain_volumes = grain_volumes
    execute_on = timestep_begin
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  nl_max_its = 30
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  dt = 0.2
  num_steps = 5
[]

[Outputs]
  exodus = true
[]

[ICs]
  [./rect_c]
    y2 = 20.0
    y1 = 5.0
    inside = 1.0
    x2 = 30.0
    variable = c
    x1 = 10.0
    type = BoundingBoxIC
  [../]
  [./rect_eta]
    y2 = 20.0
    y1 = 5.0
    inside = 1.0
    x2 = 30.0
    variable = eta
    x1 = 10.0
    type = BoundingBoxIC
  [../]
[]

modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_first/small.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'small'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./corner]
    type = ExtraNodesetGenerator
    input = block_rename
    coord = '0 -10.0'
    new_boundary = point
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = corner
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    use_automatic_differentiation = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
  [../]
  [./plank]
    use_automatic_differentiation = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ADComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/phase_field/test/tests/actions/Nonconserved_variableL.i

#
# Test the parsed function free enery Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  xmax = 40
  ymax = 40
  elem_type = QUAD
[]

[Modules]
  [./PhaseField]
    [./Nonconserved]
      [./eta]
        free_energy = F
        kappa = 2.0
        mobility = variable_L
      [../]
    [../]
  [../]
[]

[ICs]
  [./InitialCondition]
    type = SmoothCircleIC
    variable = eta
    x1 = 20.0
    y1 = 20.0
    radius = 6.0
    invalue = 0.9
    outvalue = 0.1
    int_width = 3.0
  [../]
[]

[Materials]
  [./mobility]
    type = DerivativeParsedMaterial
    f_name = variable_L
    args = 'eta'
    function = '0.5 * eta + 1.5 * (1 - eta)'
    derivative_order = 1
    outputs = exodus
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta'
    function = '2 * eta^2 * (1-eta)^2 - 0.2*eta'
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  num_steps = 10
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/find_value_on_line/findvalueonline.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 10
[]

[Variables]
  [./phi]
    [./InitialCondition]
      type = FunctionIC
      function = if(x<1,1-x,0)
    [../]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = phi
  [../]
  [./dt]
    type = TimeDerivative
    variable = phi
  [../]
[]

[BCs]
  [./influx]
    type = NeumannBC
    boundary = left
    variable = phi
    value = 1
  [../]
  [./fix]
    type = DirichletBC
    boundary = right
    variable = phi
    value = 0
  [../]
[]

[Postprocessors]
  [./pos]
    type = FindValueOnLine
    target = 0.5
    v = phi
    start_point = '0 0 0'
    end_point = '10 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 2.5
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/poro_elasticity/terzaghi_constM.i

# Terzaghi's problem of consolodation of a drained medium
#
# A saturated soil sample sits in a bath of water.
# It is constrained on its sides, and bottom.
# Its sides and bottom are also impermeable.
# Initially it is unstressed.
# A normal stress, q, is applied to the soil's top.
# The soil then slowly compresses as water is squeezed
# out from the sample from its top (the top BC for
# the porepressure is porepressure = 0).
#
# See, for example.  Section 2.2 of the online manuscript
# Arnold Verruijt "Theory and Problems of Poroelasticity" Delft University of Technology 2013
# but note that the "sigma" in that paper is the negative
# of the stress in TensorMechanics
#
# Here are the problem's parameters, and their values:
# Soil height.  h = 10
# Soil's Lame lambda.  la = 2
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = 3
# Soil bulk modulus.  K = la + 2*mu/3 = 4
# Soil confined compressibility.  m = 1/(K + 4mu/3) = 0.125
# Soil bulk compliance.  1/K = 0.25
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Soil initial storativity, which is the reciprocal of the initial Biot modulus.  S = phi0/Kf + (alpha - phi0)(1 - alpha)/K = 0.0625
# Consolidation coefficient.  c = k/(S + alpha^2 m) = 13.95348837
# Normal stress on top.  q = 1
# Initial porepressure, resulting from instantaneous application of q, assuming corresponding instantaneous increase of porepressure (Note that this is calculated by MOOSE: we only need it for the analytical solution).  p0 = alpha*m*q/(S + alpha^2 m) = 0.69767442
# Initial vertical displacement (down is positive), resulting from instantaneous application of q (Note this is calculated by MOOSE: we only need it for the analytical solution).  uz0 = q*m*h*S/(S + alpha^2 m)
# Final vertical displacement (down in positive) (Note this is calculated by MOOSE: we only need it for the analytical solution).  uzinf = q*m*h
#
# The solution for porepressure is
# P = 4*p0/\pi \sum_{k=1}^{\infty} \frac{(-1)^{k-1}}{2k-1} \cos ((2k-1)\pi z/(2h)) \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))
# This series converges very slowly for ct/h^2 small, so in that domain
# P = p0 erf( (1-(z/h))/(2 \sqrt(ct/h^2)) )
#
# The degree of consolidation is defined as
# U = (uz - uz0)/(uzinf - uz0)
# where uz0 and uzinf are defined above, and
# uz = the vertical displacement of the top (down is positive)
# U = 1 - (8/\pi^2)\sum_{k=1}^{\infty} \frac{1}{(2k-1)^2} \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = 0
  zmax = 10
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./basefixed]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  [../]
  [./topdrained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = front
  [../]
  [./topload]
    type = NeumannBC
    variable = disp_z
    value = -1
    boundary = front
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = porepressure
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = porepressure
    gravity = '0 0 0'
    fluid_component = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 8
      density0 = 1
      thermal_expansion = 0
      viscosity = 0.96
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '2 3'
    # bulk modulus is lambda + 2*mu/3 = 2 + 2*3/3 = 4
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityHMBiotModulus
    porosity_zero = 0.1
    biot_coefficient = 0.6
    solid_bulk = 4
    constant_fluid_bulk_modulus = 8
    constant_biot_modulus = 16
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0 # unimportant in this fully-saturated situation
    phase = 0
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p1]
    type = PointValue
    outputs = csv
    point = '0 0 1'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p2]
    type = PointValue
    outputs = csv
    point = '0 0 2'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p3]
    type = PointValue
    outputs = csv
    point = '0 0 3'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p4]
    type = PointValue
    outputs = csv
    point = '0 0 4'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p5]
    type = PointValue
    outputs = csv
    point = '0 0 5'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p6]
    type = PointValue
    outputs = csv
    point = '0 0 6'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p7]
    type = PointValue
    outputs = csv
    point = '0 0 7'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p8]
    type = PointValue
    outputs = csv
    point = '0 0 8'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p9]
    type = PointValue
    outputs = csv
    point = '0 0 9'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p99]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = disp_z
    use_displaced_mesh = false
  [../]
  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.5*t<0.1,0.5*t,0.1)
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.0001
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = terzaghi_constM
  [./csv]
    type = CSV
  [../]
[]

modules/phase_field/test/tests/grain_tracker_test/grain_tracker_reserve.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 100
  elem_type = QUAD4
[]

[AuxVariables]
  [./c]
  [../]
[]

[Variables]
  [./gr0]
  [../]
  [./gr1]
  [../]
[]

[ICs]
  [./gr0]
    type = MultiSmoothCircleIC
    variable = gr0
    invalue = 1.0
    outvalue = 0.0001
    bubspac = 20.0
    numbub = 2
    radius = 10.0
    int_width = 12.0
    radius_variation = 0.2
    radius_variation_type = uniform
  [../]
  [./c_IC]
    type = SmoothCircleIC
    int_width = 12.0
    x1 = 50
    y1 = 50
    radius = 10.0
    outvalue = 0
    variable = c
    invalue = 1
  [../]
[]

[Kernels]
  [./ie_gr0]
    type = TimeDerivative
    variable = gr0
  [../]
  [./diff_gr0]
    type = Diffusion
    variable = gr0
  [../]
  [./ie_gr1]
    type = TimeDerivative
    variable = gr1
  [../]
  [./diff_gr1]
    type = Diffusion
    variable = gr1
  [../]
  [./source]
    type = MaskedBodyForce
    variable = gr1
    function = t
    mask = mask
  [../]
[]

[Materials]
  [./mask]
    type = ParsedMaterial
    function = 'c'
    f_name = mask
    args = 'c'
  [../]
[]

[Postprocessors]
  [./grain_tracker]
    type = GrainTracker

    # Reserve the first "op" variable
    reserve_op = 1
    threshold = 0.1
    connecting_threshold = 0.001
    variable = 'gr0 gr1'
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  num_steps = 6
  dt = 0.25
[]

[Outputs]
  exodus = true
[]

[Problem]
  kernel_coverage_check = false
[]

modules/solid_mechanics/test/tests/umat_linear_strain_hardening/umat_linear_strain_hardening.i

# Testing the UMAT Interface - creep linear strain hardening model using the small strain formulation - visco-plastic material.
# Note that this isn't a thermal or irradiation creep model.

[Mesh]
  file = 1x1x1cube.e
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t/100
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./constant]
    type = AbaqusUmatMaterial
    formulation = linear
    block = 1
    youngs_modulus = 1000.
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    mechanical_constants = '1000. 0.3 10. 100.'
    plugin = ../../plugins/linear_strain_hardening
    num_state_vars = 3
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
  start_time = 0.0
  num_steps = 30
  dt = 1.
[]

[Outputs]
  file_base = out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/except2.i

# Exception: incorrect userobject types
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = -0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]

modules/phase_field/test/tests/grain_growth/particle.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1000
  zmin = 0
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 2
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalCircleGrainIC]
      radius = 333.333
      x = 500
      y = 500
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./c]
    [./InitialCondition]
      int_width = 60
      x1 = 167
      y1 = 500
      radius = 50
      outvalue = 0
      variable = c
      invalue = 1
      type = SmoothCircleIC
    [../]
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
    c = c
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./gr1area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      31'

  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 10
  dt = 80.0

  [./Adaptivity]
    initial_adaptivity = 2
    refine_fraction = 0.8
    coarsen_fraction = 0.05
    max_h_level = 2
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  csv = true
  exodus = true
[]

tutorials/darcy_thermo_mech/step11_action/problems/step11.i

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  ny = 200
  nx = 10
  ymax = 0.304 # Length of test chamber
  xmax = 0.0257 # Test chamber radius
[]

[Variables]
  [pressure]
  []
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[DarcyThermoMech]
[]

[Modules/TensorMechanics/Master]
  [all]
    # This block adds all of the proper Kernels, strain calculators, and Variables
    # for TensorMechanics in the correct coordinate system (autodetected)
    add_variables = true
    strain = FINITE
    eigenstrain_names = eigenstrain
    use_automatic_differentiation = true
    generate_output = 'vonmises_stress elastic_strain_xx elastic_strain_yy strain_xx strain_yy'
  []
[]

[BCs]
  [inlet]
    type = DirichletBC
    variable = pressure
    boundary = bottom
    value = 4000 # (Pa) From Figure 2 from paper.  First data point for 1mm spheres.
  []
  [outlet]
    type = DirichletBC
    variable = pressure
    boundary = top
    value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
  []
  [inlet_temperature]
    type = FunctionDirichletBC
    variable = temperature
    boundary = bottom
    function = 'if(t<0,350+50*t,350)'
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = top
  []
  [hold_inlet]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0
  []
  [hold_center]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  []
  [hold_outside]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0
  []
[]

[Materials]
  viscosity_file = data/water_viscosity.csv
  density_file = data/water_density.csv
  thermal_conductivity_file = data/water_thermal_conductivity.csv
  specific_heat_file = data/water_specific_heat.csv
  thermal_expansion_file = data/water_thermal_expansion.csv

  [column]
    type = PackedColumn
    block = 0
    temperature = temperature
    radius = 1.15
    fluid_viscosity_file = ${viscosity_file}
    fluid_density_file = ${density_file}
    fluid_thermal_conductivity_file = ${thermal_conductivity_file}
    fluid_specific_heat_file = ${specific_heat_file}
    fluid_thermal_expansion_file = ${thermal_expansion_file}
  []

  [elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 200e9 # (Pa) from wikipedia
    poissons_ratio = .3 # from wikipedia

  []
  [elastic_stress]
    type = ADComputeFiniteStrainElasticStress
  []
  [thermal_strain]
    type = ADComputeThermalExpansionEigenstrain
    stress_free_temperature = 300
    eigenstrain_name = eigenstrain
    temperature = temperature
    thermal_expansion_coeff = 1e-5
  []
[]

[Postprocessors]
  [average_temperature]
    type = ElementAverageValue
    variable = temperature
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Executioner]
  type = Transient
  start_time = -1
  end_time = 200
  steady_state_tolerance = 1e-7
  steady_state_detection = true
  dt = 0.25
  solve_type = PJFNK
  automatic_scaling = true
  compute_scaling_once = false
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 500'
  line_search = none
  [TimeStepper]
    type = FunctionDT
    function = 'if(t<0,0.1,0.25)'
  []
[]

[Outputs]
  [out]
    type = Exodus
    elemental_as_nodal = true
  []
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer_vector/master_not_enough_data.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_prop_a]
    type = UniformDistribution
    lower_bound = 1980
    upper_bound = 1981
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_prop_a'
    execute_on = 'initial timestep_end' # create new random numbers on initial and timestep_end
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
    execute_on = 'initial timestep_end'
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'Materials/mat/prop_values'
    to_control = 'stochastic'
    execute_on = 'initial timestep_end'
    check_multiapp_execute_on = false
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'initial timestep_end'
[]

test/tests/transfers/transfer_with_reset/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./t]
  [../]
  [./u_from_master]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./t]
    type = FunctionAux
    variable = t
    function = t
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/kernels/conservative_advection/none_in_all_out.i

# Using ConservativeAdvection with full upwinding
# This demonstrates BCs that introduce no mass into
# the domain but allow it to exit freely.
[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 10
  nx = 100
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u]
    type = FunctionIC
    variable = u
    function = 'if(x<5,x,10-x)'
  [../]
[]

[Kernels]
  [./dot]
    type = MassLumpedTimeDerivative
    variable = u
  [../]
  [./advection]
    type = ConservativeAdvection
    variable = u
    upwinding_type = full
    velocity = '1 0 0'
  [../]
[]

[BCs]
  [./allow_mass_out]
    type = OutflowBC
    boundary = right
    variable = u
    velocity = '1 0 0'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Linear
  dt = 1
  end_time = 10
  l_tol = 1E-14
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/static_deformations/layered_cosserat_01.i

# apply uniform stretches and observe the stresses
# with
# young = 0.7
# poisson = 0.2
# layer_thickness = 0.1
# joint_normal_stiffness = 0.25
# joint_shear_stiffness = 0.2
# then
# a0000 = 0.730681
# a0011 = 0.18267
# a2222 = 0.0244221
# a0022 = 0.006055
# a0101 = 0.291667
# a66 = 0.018717
# a77 = 0.310383
# b0110 = 0.000534
# b0101 = 0.000107
# and with
# strain_xx = 1
# strain_yy = 2
# strain_zz = 3
# then
# stress_xx = a0000*1 + a0011*2 + a0022*3 = 1.114187
# stress_yy = a0011*1 + a0000*2 + a0022*3 = 1.662197
# stress_zz = a0022*(1+2) + a2222*3 = 0.09083
# and all others zero
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  ymax = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  # zmin is called back
  # zmax is called front
  # ymin is called bottom
  # ymax is called top
  # xmin is called left
  # xmax is called right
  [./strain_xx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'left right'
    function = x
  [../]
  [./strain_yy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'bottom top'
    function = 2*y
  [../]
  [./strain_zz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'back front'
    function = 3*z
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yx]
    type = PointValue
    point = '0 0 0'
    variable = stress_yx
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zx]
    type = PointValue
    point = '0 0 0'
    variable = stress_zx
  [../]
  [./s_zy]
    type = PointValue
    point = '0 0 0'
    variable = stress_zy
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./c_s_xx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xx
  [../]
  [./c_s_xy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xy
  [../]
  [./c_s_xz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xz
  [../]
  [./c_s_yx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yx
  [../]
  [./c_s_yy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yy
  [../]
  [./c_s_yz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yz
  [../]
  [./c_s_zx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zx
  [../]
  [./c_s_zy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zy
  [../]
  [./c_s_zz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zz
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 0.7
    poisson = 0.2
    layer_thickness = 0.1
    joint_normal_stiffness = 0.25
    joint_shear_stiffness = 0.2
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol'
    petsc_options_value = 'gmres asm lu 1E-10 1E-14 10 1E-15 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = layered_cosserat_01
  csv = true
[]

modules/tensor_mechanics/test/tests/shell/static/plate_bending2.i

# Shell element verification test from Abaqus verification manual 1.3.13

# A 40 m x 20 m x 1 m plate that has E = 1000 Pa and Poisson's ratio = 0.3
# is subjected to the following boundary/loading conditions. A single shell
# element is used to model the plate.

# disp_z = 0 at vertices A (0, 0), B (40, 0) and D (20, 0).
# disp_x and disp_y are zero at all four vertices.

# F_z = -2.0 N at vertex C (40, 20).
# M_x = 20.0 Nm at vertices A and B (bottom boundary)
# M_x = -20.0 Nm at vertices C and D (top boundary)
# M_y = 10.0 Nm at vertices B and C (right boundary)
# M_y = -10.0 Nm at vertices A and D (left boundary)

# The disp_z at vertex C is -12.54 m using S4 elements in Abaqus.
# The solution obtained using Moose is -12.519 m with a relative error
# of 0.16%.

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 1
    ny = 1
    xmin = 0.0
    xmax = 40.0
    ymin = 0.0
    ymax = 20.0
  [../]

  [./c_node]
    type = ExtraNodesetGenerator
    input = gmg
    new_boundary = 100
    coord = '40.0 20.0'
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./simply_support_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'right top bottom left'
    value = 0.0
  [../]
  [./simply_support_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'right top bottom left'
    value = 0.0
  [../]
  [./simply_support_z]
    type = DirichletBC
    variable = disp_z
    boundary = 'bottom left'
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_C]
    type = ConstantRate
    variable = disp_z
    boundary = 100
    rate = -2.0
  [../]
  [./Mx_AB]
    type = ConstantRate
    variable = rot_x
    boundary = bottom
    rate = 20.0
  [../]
  [./Mx_CD]
    type = ConstantRate
    variable = rot_x
    boundary = top
    rate = -20.0
  [../]
  [./My_BC]
    type = ConstantRate
    variable = rot_y
    boundary = right
    rate = 10.0
  [../]
  [./My_AD]
    type = ConstantRate
    variable = rot_y
    boundary = left
    rate = -10.0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  #nl_max_its = 2
  nl_rel_tol = 1e-10
  nl_abs_tol = 6e-6

  dt = 1.0
  dtmin = 1.0
  end_time = 3
[]

[Kernels]
  [./solid_disp_x]
    type = ADStressDivergenceShell
    block = '0'
    component = 0
    variable = disp_x
    through_thickness_order = SECOND
  [../]
  [./solid_disp_y]
    type = ADStressDivergenceShell
    block = '0'
    component = 1
    variable = disp_y
    through_thickness_order = SECOND
  [../]
  [./solid_disp_z]
    type = ADStressDivergenceShell
    block = '0'
    component = 2
    variable = disp_z
    through_thickness_order = SECOND
  [../]
  [./solid_rot_x]
    type = ADStressDivergenceShell
    block = '0'
    component = 3
    variable = rot_x
    through_thickness_order = SECOND
  [../]
  [./solid_rot_y]
    type = ADStressDivergenceShell
    block = '0'
    component = 4
    variable = rot_y
    through_thickness_order = SECOND
  [../]
[]

[Materials]
  [./elasticity]
    type = ADComputeIsotropicElasticityTensorShell
    youngs_modulus = 1e3
    poissons_ratio = 0.3
    block = 0
    through_thickness_order = SECOND
  [../]
  [./strain]
    type = ADComputeIncrementalShellStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y'
    thickness = 1.0
    through_thickness_order = SECOND
  [../]
  [./stress]
    type = ADComputeShellStress
    block = 0
    through_thickness_order = SECOND
  [../]
[]

[Postprocessors]
  [./disp_z2]
    type = PointValue
    point = '40.0 20.0 0.0'
    variable = disp_z
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/beam_pbp/sm/beam_pbp_sm.i

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  volumetric_locking_correction = false
[]

[Mesh]
  file = beam_pbp.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./press]
    type = ParsedFunction
    value = '100*t*x*z*z*z'
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[] # Variables

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 10
    value = 0.0
  [../]

  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]

  [./Pressure]
    [./the_pressure]
      boundary = 2
      function = press
    [../]
  [../]

[] # BCs

[Materials]

  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[] # Materials

[Preconditioning]
  [./PBP]
    type = PBP
    solve_order = 'disp_x disp_y disp_z'
    preconditioner = 'amg amg amg'
    off_diag_row = 'disp_y disp_z disp_z'
    off_diag_column = 'disp_x disp_x disp_y'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = JFNK

  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 2
[] # Executioner

[Postprocessors]
  [./nonlnrits]
    type = NumNonlinearIterations
  [../]
[] # Postprocessors

[Outputs]
  exodus = true
[] # Outputs

modules/chemical_reactions/test/tests/desorption/mollified_langmuir_jac_de.i

# testing desorption jacobian
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[Variables]
  [./pressure]
  [../]
  [./conc]
  [../]
[]

[ICs]
  [./p_ic]
    type = RandomIC
    variable = pressure
    min = 2
    max = 3
  [../]
  [./conc_ic]
    type = RandomIC
    variable = conc
    min = -1
    max = 1
  [../]
[]


[Kernels]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    variable = conc
    pressure_var = pressure
  [../]
  [./flux_to_porespace]
    type = DesorptionToPorespace
    variable = pressure
    conc_var = conc
  [../]
[]

[Materials]
  [./mollified_langmuir_params]
    type = MollifiedLangmuirMaterial
    block = 0
    one_over_desorption_time_const = 0.813
    one_over_adsorption_time_const = 0
    langmuir_density = 0.34
    langmuir_pressure = 1.5
    conc_var = conc
    pressure_var = pressure
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = langmuir_jac1
[]

modules/combined/test/tests/adaptive_timestepping/adapt_tstep_function_change_sm.i

# This is a test designed to evaluate the cabability of the
# IterationAdaptiveDT TimeStepper to adjust time step size according to
# a function.  For example, if the power input function for a BISON
# simulation rapidly increases or decreases, the IterationAdaptiveDT
# TimeStepper should take time steps small enough to capture the
# oscillation.

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  order = FIRST
  family = LAGRANGE
  block = 1
[]

[Mesh]
  file = 1hex8_10mm_cube.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./Fiss_Function]
    type = PiecewiseLinear
    x = '0 1e6  2e6  2.001e6 2.002e6'
    y = '0 3e8  3e8  12e8    0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

  [./temp]
    initial_condition = 300.0
  [../]
[]

[AuxVariables]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]

  [./heat_source]
     type = HeatSource
     variable = temp
     value = 1.0
     function = Fiss_Function
  [../]
[]

[AuxKernels]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./bottom_temp]
    type = DirichletBC
    variable = temp
    boundary = 1
    value = 300
  [../]
  [./top_bottom_disp_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1'
    value = 0
  [../]
  [./top_bottom_disp_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1'
    value = 0
  [../]
  [./top_bottom_disp_z]
    type = DirichletBC
    variable = disp_z
    boundary = '1'
    value = 0
  [../]
[]

[Materials]
 [./thermal]
    type = HeatConductionMaterial
    temp = temp
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./elastic]
    type = Elastic
    youngs_modulus = 300e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion = 5e-6
    stress_free_temperature = 300.0
    increment_calculation = Eigen
  [../]

  [./density]
    type = Density
    density = 10963.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  verbose = true
  nl_abs_tol = 1e-10
  start_time = 0.0
  num_steps = 50000
  end_time = 2.002e6
  [./TimeStepper]
    type = IterationAdaptiveDT
    timestep_limiting_function = Fiss_Function
    max_function_change = 3e7
    dt = 1e6
  [../]
[]

[Postprocessors]
  [./Temperature_of_Block]
    type = ElementAverageValue
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./vonMises]
    type = ElementAverageValue
    variable = vonmises_stress
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

test/tests/multiapps/restart_subapp_ic/master2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  ymin = 0
  xmax = 1
  ymax = 1
  nx = 10
  ny = 10
[]

[Functions]
  [./v_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./ufn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = v_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    app_type = MooseTestApp
    type = TransientMultiApp
    input_files = 'sub2.i'
    execute_on = timestep_end
    positions = '0 -1 0'
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub_app
    source_variable = u
    variable = v
  [../]
[]

[Problem]
  restart_file_base = master_out_cp/0005
[]

modules/functional_expansion_tools/test/tests/standard_use/interface_coupled.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0.0
  xmax = 0.4
  nx = 6
  ymin = 0.0
  ymax = 10.0
  ny = 20
[]

[Variables]
  [./m]
  [../]
[]

[Kernels]
  [./diff_m]
    type = Diffusion
    variable = m
  [../]
  [./time_diff_m]
    type = TimeDerivative
    variable = m
  [../]
  [./source_m]
    type = BodyForce
    variable = m
    value = 100
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    value = 2
    variable = m
  [../]
[]

[BCs]
  [./interface_value]
    type = FXValueBC
    variable = m
    boundary = right
    function = FX_Basis_Value_Main
  [../]
  [./interface_flux]
    type = FXFluxBC
    boundary = right
    variable = m
    function = FX_Basis_Flux_Main
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '4'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
  [./FX_Basis_Flux_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '5'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
[]

[UserObjects]
  [./FX_Flux_UserObject_Main]
    type = FXBoundaryFluxUserObject
    function = FX_Basis_Flux_Main
    variable = m
    boundary = right
    diffusivity = 0.1
  [../]
[]

[Postprocessors]
  [./average_interface_value]
    type = SideAverageValue
    variable = m
    boundary = right
  [../]
  [./total_flux]
    type = SideFluxIntegral
    variable = m
    boundary = right
    diffusivity = 0.1
  [../]
  [./picard_iterations]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 1.0
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = interface_sub.i
    sub_cycling = true
  [../]
[]

[Transfers]
  [./FluxToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Flux_UserObject_Main
    multi_app_object_name = FX_Basis_Flux_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
  [./FluxToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Flux_Main
    multi_app_object_name = FX_Flux_UserObject_Sub
  [../]
[]

python/chigger/tests/input/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    use_problem_dimension = false
  [../]
[]

test/tests/geomsearch/2d_moving_penetration/pl_test3ns.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-10
  l_max_its = 10

  start_time = 0.0
  dt = 0.0125
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test3ns_out
  exodus = true
[]

modules/functional_expansion_tools/examples/2D_interface_no_material/main.i

# Derived from the example '2D_interface' with the following differences:
#
#   1) No materials are used
[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0.0
  xmax = 0.4
  nx = 6
  ymin = 0.0
  ymax = 10.0
  ny = 20
[]

[Variables]
  [./m]
  [../]
[]

[Kernels]
  [./diff_m]
    type = Diffusion
    variable = m
  [../]
  [./time_diff_m]
    type = TimeDerivative
    variable = m
  [../]
  [./source_m]
    type = BodyForce
    variable = m
    value = 100
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    value = 2
    variable = m
  [../]
[]

[BCs]
  [./interface_value]
    type = FXValueBC
    variable = m
    boundary = right
    function = FX_Basis_Value_Main
  [../]
  [./interface_flux]
    type = FXFluxBC
    boundary = right
    variable = m
    function = FX_Basis_Flux_Main
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '4'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
  [./FX_Basis_Flux_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '5'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
[]

[UserObjects]
  [./FX_Flux_UserObject_Main]
    type = FXBoundaryFluxUserObject
    function = FX_Basis_Flux_Main
    variable = m
    boundary = right
    diffusivity = 0.1
  [../]
[]

[Postprocessors]
  [./average_interface_value]
    type = SideAverageValue
    variable = m
    boundary = right
  [../]
  [./total_flux]
    type = SideFluxIntegral
    variable = m
    boundary = right
    diffusivity = 0.1
  [../]
  [./picard_iterations]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1.0
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = sub.i
    sub_cycling = true
  [../]
[]

[Transfers]
  [./FluxToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Flux_UserObject_Main
    multi_app_object_name = FX_Basis_Flux_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
  [./FluxToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Flux_Main
    multi_app_object_name = FX_Flux_UserObject_Sub
  [../]
[]

modules/phase_field/test/tests/actions/conserved_direct_1var.i

#
# Test consreved action for direct solve
#
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 16
  ny = 16
  xmax = 50
  ymax = 50
  elem_type = QUAD
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./cv]
        solve_type = direct
        free_energy = F
        kappa = 2.0
        mobility = 1.0
      [../]
    [../]
  [../]
[]

[ICs]
  [./InitialCondition]
    type = CrossIC
    x1 = 5.0
    y1 = 5.0
    x2 = 45.0
    y2 = 45.0
    variable = cv
  [../]
[]

[Materials]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'cv'
    function = '(1-cv)^2 * (1+cv)^2'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 10
  nl_rel_tol = 1.0e-10

  start_time = 0.0
  num_steps = 5
  dt = 0.7
[]

[Outputs]
  [./out]
    type = Exodus
    refinements = 2
  [../]
[]

modules/tensor_mechanics/test/tests/recompute_radial_return/isotropic_plasticity_finite_strain.i

# This simulation uses the piece-wise linear strain hardening model
# with the incremental small strain formulation; incremental small strain
# is required to produce the strain_increment for the DiscreteRadialReturnStressIncrement
# class, which handles the calculation of the stress increment to return
# to the yield surface in a J2 (isotropic) plasticity problem.
#
#  This test assumes a Poissons ratio of 0.3 and applies a displacement loading
# condition on the top in the y direction.
#
# An identical problem was run in Abaqus on a similar 1 element mesh and was used
# to verify the SolidMechanics solution; this TensorMechanics code matches the
# SolidMechanics solution.
#
# Mechanical strain is the sum of the elastic and plastic strains but is different
# from total strain in cases with eigen strains, e.g. thermal strain.

[Mesh]
  file = 1x1x1cube.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t*(0.0625)
  [../]
  [./hf]
    type = PiecewiseLinear
    x = '0  0.001 0.003 0.023'
    y = '50 52    54    56'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_yy plastic_strain_xx plastic_strain_yy plastic_strain_zz'
  [../]
[]

[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./isotropic_plasticity]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 50.0
    hardening_function = hf
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    tangent_operator = elastic
    inelastic_models = 'isotropic_plasticity'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 0.075
  dt = 0.00125
  dtmin = 0.0001
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/frictionless_penalty.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2. The gold file is run
#  on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/sm/frictional_02_penalty_sm.i

#  This is a benchmark test that checks constraint based frictional
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2 and a friction coefficient
#  of 0.2 is used.  The gold file is run on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]
[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm     lu    20    101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-3
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    friction_coefficient = 0.2
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

test/tests/multiapps/picard/picard_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test5.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
    xmin = 0
    xmax = 4
    ymin = 0
    ymax = 4
  []

  [./SubdomainBoundingBox1]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '1 2 1'
  [../]
  [./SubdomainBoundingBox2]
    type = SubdomainBoundingBoxGenerator
    input = SubdomainBoundingBox1
    block_id = 1
    bottom_left = '1 1 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeletionGenerator
    block_id = 1
    input = SubdomainBoundingBox2
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/outputs/vtk/vtk_diff_serial_mesh_parallel.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2

  # We found that the Metis partitioner sometimes partitioned this 2x2
  # mesh differently on Mac vs. Linux?
  partitioner = centroid
  centroid_partitioner_direction = x
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  vtk = true
[]

test/tests/restart/restart_diffusion/restart_diffusion_from_end_part2.i

[Mesh]
  file = restart_diffusion_from_end_part1_out.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_from_file_var = u
    initial_from_file_timestep = LATEST
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  active = 'left right'

  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test11.i

[Mesh]
  [./fmg]
    type = FileMeshGenerator
    file = pyramid.e
  []

  [./sbb2]
    type = SubdomainBoundingBoxGenerator
    input = fmg
    block_id = 2
    bottom_left = '-0.5 -0.5 -0.5'
    top_right = '0.5 0.5 0.5'
  [../]
  [./swiss_cheese2]
    type = BlockDeletionGenerator
    block_id = 2
    input = 'sbb2'
  [../]
  [./sbb3]
    type = SubdomainBoundingBoxGenerator
    input = swiss_cheese2
    block_id = 3
    bottom_left = '-5 -5 -3'
    top_right = '-2 -2 -1'
  [../]
  [./swiss_cheese3]
    type = BlockDeletionGenerator
    block_id = 3
    input = 'sbb3'
  [../]
  [./sbb4]
    type = SubdomainBoundingBoxGenerator
    input = swiss_cheese3
    block_id = 4
    bottom_left = '-1 2 -2'
    top_right = '1 5 0'
  [../]
  [./swiss_cheese4]
    type = BlockDeletionGenerator
    block_id = 4
    input = 'sbb4'
  [../]
  [./sbb5]
    type = OrientedSubdomainBoundingBoxGenerator
    input = swiss_cheese4
    block_id = 5
    center = '2.4 -1.4 0.4'
    height = 3
    length = 8
    length_direction = '-2 1 -1'
    width = 3
    width_direction = '1 2 0'
  [../]
  [./swiss_cheese5]
    type = BlockDeletionGenerator
    block_id = 5
    input = 'sbb5'
  [../]
  [./sbb6]
    type = OrientedSubdomainBoundingBoxGenerator
    input = swiss_cheese5
    block_id = 6
    center = '-1 0.4 2.2'
    height = 1
    length = 8
    length_direction = '2 -1 -1'
    width = 1
    width_direction = '1 2 0'
  [../]
  [./swiss_cheese6]
    type = BlockDeletionGenerator
    block_id = 6
    input = 'sbb6'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = top
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 100
  dt = 100

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/peridynamics/test/tests/jacobian_check/2D_thermomechanics_smallstrain_NOSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./temp]
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
    eigenstrain_names = thermal
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConductionBPD
    variable = temp
  [../]
[]

[Materials]
  [./linelast]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputePlaneSmallStrainNOSPD
    eigenstrain_names = thermal
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-5
    stress_free_temperature = 0.5
    eigenstrain_name = thermal
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./thermal]
    type = ThermalConstantHorizonMaterialBPD
    thermal_conductivity = 1.0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

modules/solid_mechanics/test/tests/j_integral_vtest/j_int_surfbreak_ellip_crack_sym_mm_cm.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = ellip_crack_4sym_norad_mm.e
  displacements = 'disp_x disp_y disp_z'
  partitioner = centroid
  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./resid_z]
  [../]
[]


[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.1'
    scale_factor = -689.5 #MPa
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 1001
  crack_direction_method = CrackMouth
  crack_mouth_boundary = 11
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0.0 1.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  radius_inner = '12.5 25.0 37.5'
  radius_outer = '25.0 37.5 50.0'
  intersecting_boundary = '1 2'
  symmetry_plane = 2
  position_type = angle
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
    save_in_disp_z = resid_z
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 12
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 5
      function = rampConstantUp
    [../]
  [../]
[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 206.8e+3 #MPa
    #youngs_modulus = 30e+6
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


#  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   nl_rel_tol = 1e-11
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]

  [./nl_its]
    type = NumNonlinearIterations
  [../]

  [./lin_its]
    type = NumLinearIterations
  [../]

  [./react_z]
    type = NodalSum
    variable = resid_z
    boundary = 5
  [../]

[]


[Outputs]
  execute_on = 'timestep_end'
  file_base = j_int_surfbreak_ellip_crack_sym_mm_cm_out
  exodus = true
  csv = true
[]

modules/combined/test/tests/sliding_block/in_and_out/dirac/sm/frictional_04_penalty_sm.i

#  This is a benchmark test that checks Dirac based frictional
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2 and a friction coefficient
#  of 0. is used.  The gold file is run on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    friction_coefficient = 0.4
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/porous_flow/examples/tutorial/05.i

# Darcy flow with heat advection and conduction, using Water97 properties
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
    input = annular
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
    initial_condition = 1E6
  [../]
  [./temperature]
    initial_condition = 313
    scaling = 1E-8
  [../]
[]

[PorousFlowBasicTHM]
  porepressure = porepressure
  temperature = temperature
  coupling_type = ThermoHydro
  gravity = '0 0 0'
  fp = the_simple_fluid
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 2E6
    boundary = injection_area
  [../]
  [./constant_injection_temperature]
    type = DirichletBC
    variable = temperature
    value = 333
    boundary = injection_area
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.8
    solid_bulk_compliance = 2E-7
    fluid_bulk_modulus = 1E7
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1E-14 0 0   0 1E-14 0   0 0 1E-14'
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityConst
    block = caps
    permeability = '1E-15 0 0   0 1E-15 0   0 0 1E-16'
  [../]

  [./thermal_expansion]
    type = PorousFlowConstantThermalExpansionCoefficient
    biot_coefficient = 0.8
    drained_coefficient = 0.003
    fluid_coefficient = 0.0002
  [../]
  [./rock_internal_energy]
    type = PorousFlowMatrixInternalEnergy
    density = 2500.0
    specific_heat_capacity = 1200.0
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '10 0 0  0 10 0  0 0 10'
    block = 'caps aquifer'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E5
  nl_abs_tol = 1E-10
[]

[Outputs]
  exodus = true
[]

test/tests/controls/time_periods/multiapps/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
    initial_condition = 1
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.2
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0.3 # set to match start time of MultiApp in master
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/userobjects/setup_interface_count/element.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    ny = 2
  []
  [./right_side]
    input = gen
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0 0 0'
    top_right = '1 0.5 0'
    block_id = 1
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [./initial] # 1 per simulation
    type = ElementSetupInterfaceCount
    count_type = 'initial'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./timestep] # once per timestep
    type = ElementSetupInterfaceCount
    count_type = 'timestep'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./subdomain] # 2 on initial and 4 for each timestep
    type = ElementSetupInterfaceCount
    count_type = 'subdomain'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./initialize] # 1 for initial and 2 for each timestep
    type = ElementSetupInterfaceCount
    count_type = 'initialize'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./finalize] # 1 for initial and 2 for each timestep
    type = ElementSetupInterfaceCount
    count_type = 'finalize'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./execute] # 4 for initial and 8 for each timestep
    type = ElementSetupInterfaceCount
    count_type = 'execute'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./threadjoin] # 1 for initial and 2 for each timestep
    type = ElementSetupInterfaceCount
    count_type = 'threadjoin'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_3/ring3_template2_sm.i

[Mesh]
  file = ring3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/level_set/test/tests/transfers/markers/multi_level/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  uniform_refine = 2
[]

[AuxVariables]
  [./marker]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  hide = 'u'
  exodus = true
[]

modules/porous_flow/test/tests/mass_conservation/mass07.i

# Checking that the mass postprocessor throws the correct error if
# too many phases are supplied

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./sat]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]

[ICs]
  [./pinit]
    type = ConstantIC
    value = 1
    variable = pp
  [../]
  [./satinit]
    type = FunctionIC
    function = 1-x
    variable = sat
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sat
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp sat'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = pp
    phase1_saturation = sat
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Postprocessors]
  [./comp1_total_mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    phase = '0 1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_2d_points.i

#This tests the J-Integral evaluation capability.
#This is a 2d plane strain model
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack2d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  crack_front_points = '0 -10 0'
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = j_integral_2d_points_out
  exodus = true
  csv = true
[]

modules/porous_flow/test/tests/jacobian/mass09.i

# 2phase (PS)
# vanGenuchten, constant-bulk density for each phase, constant porosity, 2components (that exist in both phases)
# unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./sgas]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = 0
    max = 1
  [../]
  [./sgas]
    type = RandomIC
    variable = sgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./mass_sp0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./mass_sp1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
    pc_max = 10
    sat_lr = 0.1
    log_extension = false
    s_scale = 0.9
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  active = check
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/richards/test/tests/jacobian_2/jn_fu_18.i

# two phase
# almost gas saturated

# gravity = true
# supg = true
# transient = true


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -100.0
      max = -90.0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn18
  exodus = false
[]

test/tests/geomsearch/2d_moving_penetration/pl_test1tt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test1.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test1tt_out
  exodus = true
[]

modules/phase_field/test/tests/phase_field_kernels/SimpleCHInterface.i

#
# Test the non-split parsed function free enery Cahn-Hilliard kernel
# The free energy used here has the same functional form as the CHPoly kernel
# If everything works, the output of this test should replicate the output
# of marmot/tests/chpoly_test/CHPoly_test.i (exodiff match)
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 16
  ny = 16
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./cv]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./InitialCondition]
    type = CrossIC
    x1 = 5.0
    y1 = 5.0
    x2 = 45.0
    y2 = 45.0
    variable = cv
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = cv
  [../]
  [./CHSolid]
    type = CahnHilliard
    variable = cv
    f_name = F
    mob_name = M
  [../]
  [./CHInterface]
    type = SimpleCHInterface
    variable = cv
    mob_name = M
    kappa_name = kappa_c
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1 0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'cv'
    function = '(1-cv)^2 * (1+cv)^2'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 15
  l_tol = 1.0e-4
  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 2
  dt = 0.7
[]

[Outputs]
  [./out]
    type = Exodus
    refinements = 1
  [../]
[]

modules/phase_field/tutorials/spinodal_decomposition/s4_mobility.i

#
# Example simulation of an iron-chromium alloy at 500 C. Equilibrium
# concentrations are at 23.6 and 82.3 mol% Cr. Kappa value, free energy equation,
# and mobility equation were provided by Lars Hoglund. Solved using the split
# form of the Cahn-Hilliard equation.
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  nx = 25
  ny = 25
  nz = 0
  xmin = 0
  xmax = 25
  ymin = 0
  ymax = 25
  zmin = 0
  zmax = 0
  uniform_refine = 2
[]

[Variables]
  [./c]   # Mole fraction of Cr (unitless)
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]   # Chemical potential (eV/mol)
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./concentrationIC]   # 46.774 mol% Cr with variations
    type = RandomIC
    min = 0.44774
    max = 0.48774
    seed = 210
    variable = c
  [../]
[]

[BCs]
  [./Periodic]
    [./c_bcs]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Kernels]
  [./w_dot]
    variable = w
    v = c
    type = CoupledTimeDerivative
  [../]
  [./coupled_res]
    variable = w
    type = SplitCHWRes
    mob_name = M
  [../]
  [./coupled_parsed]
    variable = c
    type = SplitCHParsed
    f_name = f_loc
    kappa_name = kappa_c
    w = w
  [../]
[]

[Materials]
  # d is a scaling factor that makes it easier for the solution to converge
  # without changing the results. It is defined in each of the first three
  # materials and must have the same value in each one.
  [./kappa]                  # Gradient energy coefficient (eV nm^2/mol)
    type = GenericFunctionMaterial
    prop_names = 'kappa_c'
    prop_values = '8.125e-16*6.24150934e+18*1e+09^2*1e-27'
                  # kappa_c *eV_J*nm_m^2* d
  [../]
  [./mobility]               # Mobility (nm^2 mol/eV/s)
    # NOTE: This is a fitted equation, so only 'Conv' has units
    type = DerivativeParsedMaterial
    f_name = M
    args = c
    constant_names =       'Acr    Bcr    Ccr    Dcr
                            Ecr    Fcr    Gcr
                            Afe    Bfe    Cfe    Dfe
                            Efe    Ffe    Gfe
                            nm_m   eV_J   d'
    constant_expressions = '-32.770969 -25.8186669 -3.29612744 17.669757
                            37.6197853 20.6941796  10.8095813
                            -31.687117 -26.0291774 0.2286581   24.3633544
                            44.3334237 8.72990497  20.956768
                            1e+09      6.24150934e+18          1e-27'
    function = 'nm_m^2/eV_J/d*((1-c)^2*c*10^
                (Acr*c+Bcr*(1-c)+Ccr*c*log(c)+Dcr*(1-c)*log(1-c)+
                Ecr*c*(1-c)+Fcr*c*(1-c)*(2*c-1)+Gcr*c*(1-c)*(2*c-1)^2)
                +c^2*(1-c)*10^
                (Afe*c+Bfe*(1-c)+Cfe*c*log(c)+Dfe*(1-c)*log(1-c)+
                Efe*c*(1-c)+Ffe*c*(1-c)*(2*c-1)+Gfe*c*(1-c)*(2*c-1)^2))'
    derivative_order = 1
    outputs = exodus
  [../]
  [./local_energy]           # Local free energy function (eV/mol)
    type = DerivativeParsedMaterial
    f_name = f_loc
    args = c
    constant_names = 'A   B   C   D   E   F   G  eV_J  d'
    constant_expressions = '-2.446831e+04 -2.827533e+04 4.167994e+03 7.052907e+03
                            1.208993e+04 2.568625e+03 -2.354293e+03
                            6.24150934e+18 1e-27'
    function = 'eV_J*d*(A*c+B*(1-c)+C*c*log(c)+D*(1-c)*log(1-c)+
                E*c*(1-c)+F*c*(1-c)*(2*c-1)+G*c*(1-c)*(2*c-1)^2)'
    derivative_order = 2
  [../]
  [./precipitate_indicator]  # Returns 1/625 if precipitate
    type = ParsedMaterial
    f_name = prec_indic
    args = c
    function = if(c>0.6,0.0016,0)
  [../]
[]

[Postprocessors]
  [./step_size]             # Size of the time step
    type = TimestepSize
  [../]
  [./iterations]            # Number of iterations needed to converge timestep
    type = NumNonlinearIterations
  [../]
  [./nodes]                 # Number of nodes in mesh
    type = NumNodes
  [../]
  [./evaluations]           # Cumulative residual calculations for simulation
    type = NumResidualEvaluations
  [../]
  [./precipitate_area]      # Fraction of surface devoted to precipitates
    type = ElementIntegralMaterialProperty
    mat_prop = prec_indic
  [../]
  [./active_time]           # Time computer spent on simulation
    type = PerfGraphData
    section_name = "Root"
    data_type = total
  [../]
[]

[Preconditioning]
  [./coupled]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  l_max_its = 30
  l_tol = 1e-6
  nl_max_its = 50
  nl_abs_tol = 1e-9
  end_time = 604800   # 7 days
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type
                         -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly
                         ilu          1'
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 10
    cutback_factor = 0.8
    growth_factor = 1.5
    optimal_iterations = 7
  [../]
  [./Adaptivity]
    coarsen_fraction = 0.1
    refine_fraction = 0.7
    max_h_level = 2
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
  console = true
  csv = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/tensor_mechanics/examples/coal_mining/cosserat_wp_only.i

# Strata deformation and fracturing around a coal mine
#
# A 2D geometry is used that simulates a transverse section of
# the coal mine.  The model is actually 3D, but the "x"
# dimension is only 10m long, meshed with 1 element, and
# there is no "x" displacement.  The mine is 300m deep
# and just the roof is studied (0<=z<=300).  The model sits
# between 0<=y<=450.  The excavation sits in 0<=y<=150.  This
# is a "half model": the boundary conditions are such that
# the model simulates an excavation sitting in -150<=y<=150
# inside a model of the region -450<=y<=450.  The
# excavation height is 3m (ie, the excavation lies within
# 0<=z<=3).  Mining is simulated by moving the excavation's
# roof down, until disp_z=-3 at t=1.
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions are:
#  - disp_x = 0 everywhere
#  - disp_y = 0 at y=0 and y=450
#  - disp_z = 0 for y>150
#  - disp_z = -3 at maximum, for 0<=y<=150.  See excav function.
# That is, rollers on the sides, free at top, and prescribed at bottom.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa.  The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = -0.025*(300-z) MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg.  The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# Below you will see Drucker-Prager parameters and AuxVariables, etc.
# These are not actally used in this example.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# Weak-plane cohesion = 0.1 MPa
# Weak-plane friction angle = 20 deg
# Weak-plane dilation angle = 10 deg
# Weak-plane tensile strength = 0.1 MPa
# Weak-plane compressive strength = 100 MPa, varying down to 1 MPa when tensile strain = 1
#
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 1
    xmin = -5
    xmax = 5
    nz = 40
    zmin = 0
    zmax = 400
    bias_z = 1.1
    ny = 30 # make this a multiple of 3, so y=150 is at a node
    ymin = 0
    ymax = 450
  []
  [left]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 11
    normal = '0 -1 0'
    input = generated_mesh
  []
  [right]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 12
    normal = '0 1 0'
    input = left
  []
  [front]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 13
    normal = '-1 0 0'
    input = right
  []
  [back]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 14
    normal = '1 0 0'
    input = front
  []
  [top]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 15
    normal = '0 0 1'
    input = back
  []
  [bottom]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 16
    normal = '0 0 -1'
    input = top
  []
  [excav]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '-5 0 0'
    top_right = '5 150 3'
    input = bottom
  []
  [roof]
    type = SideSetsBetweenSubdomainsGenerator
    new_boundary = 21
    master_block = 0
    paired_block = 1
    input = excav
  []
  [hole]
    type = BlockDeletionGenerator
    block_id = 1
    input = roof
  []
[]

[GlobalParams]
  block = 0
  perform_finite_strain_rotations = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
[]

[Kernels]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_x
    component = 0
  [../]
  [./gravity]
    type = Gravity
    use_displaced_mesh = false
    variable = disp_z
    value = -10E-6
  [../]
[]


[AuxVariables]
  [./disp_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./dp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = dp_plastic_internal_parameter
    variable = dp_shear
  [../]
  [./dp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = dp_plastic_internal_parameter
    variable = dp_tensile
  [../]
  [./wp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_internal_parameter
    variable = wp_shear
  [../]
  [./wp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_internal_parameter
    variable = wp_tensile
  [../]
  [./dp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = dp_plastic_yield_function
    variable = dp_shear_f
  [../]
  [./dp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = dp_plastic_yield_function
    variable = dp_tensile_f
  [../]
  [./wp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_yield_function
    variable = wp_shear_f
  [../]
  [./wp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_yield_function
    variable = wp_tensile_f
  [../]
[]



[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '11 12 16 21' # note addition of 16 and 21
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '16'
    value = 0.0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = '11 12'
    value = 0.0
  [../]
  [./roof]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 21
    function = excav_sideways
  [../]
[]

[Functions]
  [./ini_xx]
    type = ParsedFunction
    value = '-0.8*2500*10E-6*(400-z)'
  [../]
  [./ini_zz]
    type = ParsedFunction
    value = '-2500*10E-6*(400-z)'
  [../]
  [./excav_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  e_h  closure_dist'
    vals = '1.0   0    150.0 -3.0 15.0'
    value = 'e_h*max(min((t/end_t*(ymax-ymin)+ymin-y)/closure_dist,1),0)'
  [../]
  [./excav_downwards]
    type = ParsedFunction
    vars = 'end_t ymin ymax  e_h  closure_dist'
    vals = '1.0   0    150.0 -3.0 15.0'
    value = 'e_h*t/end_t*max(min(((ymax-ymin)+ymin-y)/closure_dist,1),0)'
  [../]
[]

[UserObjects]
  [./dp_coh_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 2.9 # MPa
    value_residual = 3.1 # MPa
    rate = 1.0
  [../]
  [./dp_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.65 # 37deg
  [../]
  [./dp_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.65
  [../]

  [./dp_tensile_str_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0 # MPa
    value_residual = 1.4 # MPa
    rate = 1.0
  [../]
  [./dp_compressive_str]
    type = TensorMechanicsHardeningConstant
    value = 1.0E3 # Large!
  [../]

  [./drucker_prager_model]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = dp_coh_strong_harden
    mc_friction_angle = dp_fric
    mc_dilation_angle = dp_dil
    internal_constraint_tolerance = 1 # irrelevant here
    yield_function_tolerance = 1      # irrelevant here
  [../]

  [./wp_coh_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_tan_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.36 # 20deg
  [../]
  [./wp_tan_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.18 # 10deg
  [../]

  [./wp_tensile_str_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_compressive_str_soften]
    type = TensorMechanicsHardeningCubic
    value_0 = 100
    value_residual = 1.0
    internal_limit = 1.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3
  [../]

  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = 'ini_xx 0 0  0 ini_xx 0  0 0 ini_zz'
    eigenstrain_name = ini_stress
  [../]

  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    block = 0
    inelastic_models = 'wp'
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./dp]
    type = CappedDruckerPragerCosseratStressUpdate
    block = 0
    warn_about_precision_loss = false
    host_youngs_modulus = 8E3
    host_poissons_ratio = 0.25
    base_name = dp
    DP_model = drucker_prager_model
    tensile_strength = dp_tensile_str_strong_harden
    compressive_strength = dp_compressive_str
    max_NR_iterations = 100000
    tip_smoother = 0.1E1
    smoothing_tol = 0.1E1 # MPa  # Must be linked to cohesion
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    block = 0
    warn_about_precision_loss = false
    base_name = wp
    cohesion = wp_coh_harden
    tan_friction_angle = wp_tan_fric
    tan_dilation_angle = wp_tan_dil
    tensile_strength = wp_tensile_str_harden
    compressive_strength = wp_compressive_str_soften
    max_NR_iterations = 10000
    tip_smoother = 0.1
    smoothing_tol = 0.1 # MPa  # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0E-3
  [../]


  [./density]
    type = GenericConstantMaterial
    prop_names = density
    prop_values = 2500
  [../]
[]

[Postprocessors]
  [./subsidence]
    type = PointValue
    point = '0 0 400'
    variable = disp_z
    use_displaced_mesh = false
  [../]
[]
[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options = '-snes_converged_reason'
  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'

  line_search = bt

  nl_abs_tol = 1e-3
  nl_rel_tol = 1e-5

  l_max_its = 30
  nl_max_its = 1000

  start_time = 0.0
  dt = 0.2
  end_time = 0.2

[]

[Outputs]
  file_base = cosserat_wp_only
  interval = 1
  print_linear_residuals = false
  csv = true
  exodus = true
  [./console]
    type = Console
    output_linear = false
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update15.i

# MC update version, with only Compressive with compressive strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.
# Returns to close to the tip of the yield function.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-15 -1 -0.2  -1 -10 0.3  0.3 -0.2 -8'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/functions/piecewise_multilinear/except3.i

# PiecewiseMultilinear function exception test
# Incorrect number of data points

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 2
  nx = 1
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./f]
  [../]
[]

[AuxKernels]
  [./f_auxK]
    type = FunctionAux
    variable = f
    function = except3_fcn
  [../]
[]


[Functions]
  [./except3_fcn]
    type = PiecewiseMultilinear
    data_file = except3.txt
  [../]
[]


[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  hide = dummy
[]

test/tests/transfers/multiapp_scalar_to_auxscalar_transfer/to_sub/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./b]
    family = SCALAR
    order = SIXTH
  [../]
[]

[Kernels]
  [./diffusion]
    type = Diffusion
    variable = u
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient
[]

[Outputs]
  hide = 'u'
  exodus = true
[]

modules/xfem/test/tests/single_var_constraint_3d/stationary_fluxjump_3d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.25
  elem_type = HEX8
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./square_planar_cut_uo]
    type = RectangleCutUserObject
    cut_data = ' 0.5 -0.001 -0.001
                 0.5  1.001 -0.001
                 0.5  1.001  1.001
                 0.5 -0.001  1.001'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0
    jump_flux = 1
    geometric_cut_userobject = 'square_planar_cut_uo'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/contact_verification/hertz_cyl/half_symm_q4/hertz_cyl_half_1deg_template1.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = hertz_cyl_half_1deg.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./disp_ramp_vert]
    type = PiecewiseLinear
    x = '0. 1. 3.5'
    y = '0. -0.0020 -0.0020'
  [../]
  [./disp_ramp_horz]
    type = PiecewiseLinear
    x = '0. 1. 3.5'
    y = '0. 0.0 0.0014'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./disp_x226]
    type = NodalVariableValue
    nodeid = 225
    variable = disp_x
  [../]
  [./disp_y226]
    type = NodalVariableValue
    nodeid = 225
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2'
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]
  [./top_y_disp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = disp_ramp_vert
  [../]
  [./top_x_disp]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = disp_ramp_horz
  [../]
[]

[Materials]
  [./stuff1_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e10
    poissons_ratio = 0.0
  [../]
  [./stuff1_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./stuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./stuff2_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff2_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./stuff2_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
  [./stuff3_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '3'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff3_strain]
    type = ComputeFiniteStrain
    block = '3'
  [../]
  [./stuff3_stress]
    type = ComputeFiniteStrainElasticStress
    block = '3'
  [../]
  [./stuff4_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '4'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff4_strain]
    type = ComputeFiniteStrain
    block = '4'
  [../]
  [./stuff4_stress]
    type = ComputeFiniteStrainElasticStress
    block = '4'
  [../]
  [./stuff5_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '5'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff5_strain]
    type = ComputeFiniteStrain
    block = '5'
  [../]
  [./stuff5_stress]
    type = ComputeFiniteStrainElasticStress
    block = '5'
  [../]
  [./stuff6_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '6'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff6_strain]
    type = ComputeFiniteStrain
    block = '6'
  [../]
  [./stuff6_stress]
    type = ComputeFiniteStrainElasticStress
    block = '6'
  [../]
  [./stuff7_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '7'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff7_strain]
    type = ComputeFiniteStrain
    block = '7'
  [../]
  [./stuff7_stress]
    type = ComputeFiniteStrainElasticStress
    block = '7'
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-6
  nl_rel_tol = 1e-5
  l_max_its = 100
  nl_max_its = 200

  start_time = 0.0
  end_time = 3.5
  l_tol = 1e-3
  dt = 0.1
  dtmin = 0.1
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '3 4'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '3 4'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'x_disp y_disp cont_press'
    start_time = 0.9
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./chkfile2]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x226 disp_y226 top_react_x top_react_y'
    start_time = 0.9
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./interface]
    master = 2
    slave = 3
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+10
    system = Constraint
  [../]
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer/errors/master_multiapp_type_error.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 3
    distributions = 'uniform'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []
[]

[MultiApps]
  [sub]
    type = TransientMultiApp
    input_files = sub.i
    positions = '0 0 0'
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochasticsub'
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

modules/solid_mechanics/test/tests/test_jacobian/jacobian_test_linear.i

# This test is designed to test the jacobian for a single
# element with volumetric locking correction.
# This test uses linear small strain formulations.

# To test the jacobian obtained from finite strain formulation comment out
# formulation = linear in the materials block.

# The mesh contains one element whose y displacement is zero at
# the bottom surface (y=0) and -1.0 at the top surface (y=1).

# Result: The hand coded jacobian matches well with the finite
# difference jacobian with a error norm of 7e-15 for the linear
# small strain formulation.

# For the finite strain formulation, the error norm is in the order of 1e-8.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./x_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./y_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./z_disp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = x_disp
    disp_y = y_disp
    disp_z = z_disp
  [../]
[]

[BCs]

  [./y_force]
    type = NeumannBC
    variable = y_disp
    boundary = top
    value = -1.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = y_disp
    boundary = bottom
    value = 0.0
  [../]

[]

[Materials]
  [./elastic]
    type = Elastic
    block = 0
    disp_x = x_disp
    disp_y = y_disp
    disp_z = z_disp
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    formulation = linear
  [../]
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient #Transient

  solve_type = NEWTON
  petsc_options = '-snes_check_jacobian -snes_check_jacobian_view'

  l_max_its = 100
  nl_abs_tol = 1e-4
  start_time = 0.0
  num_steps = 1
  dt = 0.005
  dtmin = 0.005
  end_time = 0.005
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/boundary_tosub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
  xmin = 0
  xmax = 8
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_master_1]
  [../]
  [./from_master_2]
  [../]
  [./from_master_3]
  [../]
  [./from_master_4]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 0
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/thermo_mech/thermo_mech_smp_sm.i

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]

  [./temp]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./bottom_temp]
    type = DirichletBC
    variable = temp
    boundary = 1
    value = 10.0
  [../]
[]

[Materials]
  [./constant]
    type = LinearIsotropicMaterial
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp

    youngs_modulus = 1.0
    poissons_ratio = .3
    thermal_expansion = 1e-5
  [../]

  [./heat1]
    type = HeatConductionMaterial
    block = 1

    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    block = 1
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-14
  l_tol = 1e-3

  l_max_its = 100

  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = thermo_mech_smp_out
  [./exodus]
    type = Exodus
    execute_on = 'initial timestep_end nonlinear'
    nonlinear_residual_dt_divisor = 100
  [../]
[]

test/tests/kernels/ad_2d_diffusion/2d_diffusion_bodyforce_test.i

###########################################################
# This is a simple test of the Kernel System.
# It solves the Laplacian equation on a small 2x2 grid.
# The "Diffusion" kernel is used to calculate the
# residuals of the weak form of this operator. The
# "BodyForce" kernel is used to apply a time-dependent
# volumetric source.
###########################################################

[Mesh]
  file = square.e
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = ADDiffusion
    variable = u
  [../]
  [./bf]
    type = ADBodyForce
    variable = u
    postprocessor = ramp
  [../]
[]

[Functions]
  [./ramp]
    type = ParsedFunction
    value = 't'
  [../]
[]

[Postprocessors]
  [./ramp]
    type = FunctionValuePostprocessor
    function = ramp
    execute_on = linear
  [../]
[]

[BCs]
  active = 'left right'

  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  dt = 1.0
  end_time = 1.0

  solve_type = 'NEWTON'
[]

[Outputs]
  file_base = bodyforce_out
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/mass08.i

# 1phase
# vanGenuchten, constant-bulk density, HM porosity, 1component, unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pp]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
  [./pp]
    type = RandomIC
    variable = pp
    min = -1
    max = 1
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.1
    biot_coefficient = 0.5
    solid_bulk = 1
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking.i

#
# Simple pull test for cracking.
# The stress increases for two steps and then drops to zero.

[Mesh]
  file = cracking_test.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./displ]
    type = PiecewiseLinear
    x = '0 1 2 3  4'
    y = '0 1 0 -1 0'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[BCs]
  [./pull]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = displ
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.8e7
    poissons_ratio = 0
  [../]
  [./elastic_stress]
    type = ComputeSmearedCrackingStress
    cracking_stress = 1.68e6
    softening_models = abrupt_softening
  [../]
  [./abrupt_softening]
    type = AbruptSoftening
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -sub_pc_type'
  petsc_options_value = '101                asm      lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-5
  start_time = 0.0
  end_time = 0.1
  dt = 0.025
[]

[Outputs]
  exodus = true
[]

test/tests/controls/error/tid_warehouse_error.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

[Controls]
  [./func_control]
    type = TestControl
    test_type = 'tid_warehouse_error'
    parameter = 'coef'
    execute_on = 'initial timestep_begin'
  [../]
[]

modules/combined/test/tests/generalized_plane_strain_tm_contact/generalized_plane_strain_tm_contact.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  scalar_out_of_plane_strain = scalar_strain_zz
  temperature = temp
[]

[Mesh]
  file = 2squares.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./temp]
  [../]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./GeneralizedPlaneStrain]
      [./gps]
        use_displaced_mesh = true
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]

  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Functions]
  [./tempramp]
    type = ParsedFunction
    value = 't'
  [../]
[]

[BCs]
  [./x]
    type = DirichletBC
    boundary = '4 6'
    variable = disp_x
    value = 0.0
  [../]
  [./y]
    type = DirichletBC
    boundary = '4 6'
    variable = disp_y
    value = 0.0
  [../]
  [./t]
    type = DirichletBC
    boundary = '4'
    variable = temp
    value = 0.0
  [../]
  [./tramp]
    type = FunctionDirichletBC
    variable = temp
    boundary = '6'
    function = tempramp
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    off_diag_row =    'disp_x disp_y'
    off_diag_column = 'disp_y disp_x'
  [../]
[]

[Contact]
  [./mech]
    master = 8
    slave = 2
    penalty = 1e+10
    normalize_penalty = true
    system = Constraint
    tangential_tolerance = .1
    normal_smoothing_distance = .1
    model = frictionless
    formulation = kinematic
  [../]
[]

[ThermalContact]
  [./thermal]
    type = GapHeatTransfer
    master = 8
    slave = 2
    variable = temp
    tangential_tolerance = .1
    normal_smoothing_distance = .1
    gap_conductivity = 0.01
    min_gap = 0.001
    quadrature = true
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    block = '1 2'
  [../]
  [./strain]
    type = ComputePlaneSmallStrain
    eigenstrain_names = eigenstrain
    block = '1 2'
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.0
    eigenstrain_name = eigenstrain
    block = '1 2'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = '1 2'
  [../]

  [./heatcond]
    type = HeatConductionMaterial
    thermal_conductivity = 3.0
    specific_heat = 300.0
    block = '1 2'
  [../]

  [./density]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '1'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  petsc_options_iname = '-pc_type -ps_sub_type -pc_factor_mat_solver_package'
  petsc_options_value = 'asm      lu           superlu_dist'

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 20
  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 0.2
  dtmin = 0.2
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

test/tests/misc/check_error/nan_test_transient.i

[Mesh]
  file = square.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./nan]
    type = NanKernel
    variable = u
    timestep_to_nan = 2
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  dt = 1
  num_steps = 2
[]

test/tests/kernels/ode/coupled_ode_td_auxvar_ic_from_mesh.i

[Mesh]
  type = FileMesh
  file = 'coupled_ode_td_out.e'
[]

[Variables]
  [./f]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
  [./f_times_mult]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
[]

[ScalarKernels]
  [./dT]
    type = CoupledODETimeDerivative
    variable = f
    v = f_times_mult
  [../]

  [./src]
    type = ParsedODEKernel
    variable = f
    function = '-1'
  [../]

  [./f_times_mult_1]
    type = ParsedODEKernel
    variable = f_times_mult
    function = 'f_times_mult'
  [../]

  [./f_times_mult_2]
    type = ParsedODEKernel
    variable = f_times_mult
    function = '-f * g'
    args = 'f g'
  [../]
[]

[AuxVariables]
  [./g]
    family = SCALAR
    order = FIRST
    initial_from_file_var = g
    initial_from_file_timestep = 'LATEST'
  [../]
[]

[Functions]
  [./function_g]
    type = ParsedFunction
    value = '(1 + t)'
  [../]
[]

[AuxScalarKernels]
  [./set_g]
    type = FunctionScalarAux
    function = function_g
    variable = g
    execute_on = 'timestep_end'
  [../]
[]

[Postprocessors]
  [./f]
    type = ScalarVariable
    variable = f
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 3
  nl_abs_tol = 1e-9
[]

[Outputs]
  csv = true
[]

modules/peridynamics/test/tests/auxkernels/planestrain_thermomechanics_stretch_NOSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 8
    ny = 8
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./total_stretch]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mechanical_stretch]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
    eigenstrain_names = thermal_strain
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]

  [./total_stretch]
    type = MaterialRealAux
    variable = total_stretch
    property = total_stretch
  [../]
  [./mechanical_stretch]
    type = MaterialRealAux
    variable = mechanical_stretch
    property = mechanical_stretch
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 'x*x+y*y'
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    boundary = 1003
    preset = false
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 1000
    preset = false
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./strain]
    type = ComputePlaneSmallStrainNOSPD
    eigenstrain_names = thermal_strain
    plane_strain = true
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 0.0002
    stress_free_temperature = 0.0
    eigenstrain_name = thermal_strain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  l_tol = 1e-8
  nl_rel_tol = 1e-10

  start_time = 0.0
  end_time = 1.0

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

[Outputs]
  exodus = true
  file_base = planestrain_thermomechanics_stretch_NOSPD
[]

modules/contact/test/tests/mechanical-small-problem/frictionless-nodal-lm-mortar-disp-action.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  [./simple_mesh]
    type = FileMeshGenerator
    file = mesh.e
  [../]
[]

[Problem]
  kernel_coverage_check = false
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'outside_left'
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'outside_left'
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'outside_right'
    function = '-5e-3 * t'
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'outside_right'
    function = 0
  [../]
[]

[Kernels]
  [disp_x]
    type = Diffusion
    variable = disp_x
    block = '1 2'
  []
  [disp_y]
    type = Diffusion
    variable = disp_y
    block = '1 2'
  []
[]

[Debug]
  show_var_residual_norms = 1
[]

[Contact]
  [frictionless]
    mesh = simple_mesh
    master = 2
    slave = 1
    formulation = mortar
    system = constraint
  []
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  solve_type = PJFNK
  type = Transient
  num_steps = 10
  dt = 1
  dtmin = 1
  petsc_options_iname = '-pc_type -snes_linesearch_type -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       basic                 NONZERO               1e-15'
[]

[Outputs]
  exodus = true
  hide = 'contact_pressure nodal_area_frictionless penetration'
[]

[Postprocessors]
  [contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = '4'
    execute_on = 'nonlinear timestep_end'
  []
[]

tutorials/darcy_thermo_mech/step10_multiapps/problems/step10.i

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 100
  ymax = 0.304 # Length of test chamber
  xmax = 0.0257 # Test chamber radius
[]

[Variables]
  [pressure]
  []
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[AuxVariables]
  [k_eff]
    initial_condition = 15.0 # water at 20C
  []
  [velocity]
    order = CONSTANT
    family = MONOMIAL_VEC
  []
[]

[Modules/TensorMechanics/Master]
  [all]
    # This block adds all of the proper Kernels, strain calculators, and Variables
    # for TensorMechanics in the correct coordinate system (autodetected)
    add_variables = true
    strain = FINITE
    eigenstrain_names = eigenstrain
    use_automatic_differentiation = true
    generate_output = 'vonmises_stress elastic_strain_xx elastic_strain_yy strain_xx strain_yy'
  []
[]

[Kernels]
  [darcy_pressure]
    type = DarcyPressure
    variable = pressure
  []
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
  [heat_convection]
    type = DarcyAdvection
    variable = temperature
    pressure = pressure
  []
[]

[AuxKernels]
  [velocity]
    type = DarcyVelocity
    variable = velocity
    execute_on = timestep_end
    pressure = pressure
  []
[]

[BCs]
  [inlet]
    type = DirichletBC
    variable = pressure
    boundary = bottom
    value = 4000 # (Pa) From Figure 2 from paper.  First data point for 1mm spheres.
  []
  [outlet]
    type = DirichletBC
    variable = pressure
    boundary = top
    value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
  []
  [inlet_temperature]
    type = FunctionDirichletBC
    variable = temperature
    boundary = bottom
    function = 'if(t<0,350+50*t,350)'
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = top
  []
  [hold_inlet]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0
  []
  [hold_center]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  []
  [hold_outside]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0
  []
[]

[Materials]
  viscosity_file = data/water_viscosity.csv
  density_file = data/water_density.csv
  specific_heat_file = data/water_specific_heat.csv
  thermal_expansion_file = data/water_thermal_expansion.csv
  [column]
    type = PackedColumn
    temperature = temperature
    radius = 1
    thermal_conductivity = k_eff # Use the AuxVariable instead of calculating
    fluid_viscosity_file = ${viscosity_file}
    fluid_density_file = ${density_file}
    fluid_specific_heat_file = ${specific_heat_file}
    fluid_thermal_expansion_file = ${thermal_expansion_file}
  []

  [elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 200e9 # (Pa) from wikipedia
    poissons_ratio = .3 # from wikipedia
  []
  [elastic_stress]
    type = ADComputeFiniteStrainElasticStress
  []
  [thermal_strain]
    type = ADComputeThermalExpansionEigenstrain
    stress_free_temperature = 300
    thermal_expansion_coeff = 1e-6
    eigenstrain_name = eigenstrain
    temperature = temperature
  []
[]

[Postprocessors]
  [average_temperature]
    type = ElementAverageValue
    variable = temperature
  []
[]

[Executioner]
  type = Transient
  start_time = -1
  end_time = 200
  steady_state_tolerance = 1e-7
  steady_state_detection = true
  dt = 0.25
  solve_type = PJFNK
  automatic_scaling = true
  compute_scaling_once = false
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 500'
  line_search = none
  [TimeStepper]
    type = FunctionDT
    function = 'if(t<0,0.1,0.25)'
  []
[]


[MultiApps]
  [micro]
    type = TransientMultiApp
    app_type = DarcyThermoMechApp
    positions = '0.01285 0.0    0
                 0.01285 0.0608 0
                 0.01285 0.1216 0
                 0.01285 0.1824 0
                 0.01285 0.2432 0
                 0.01285 0.304  0'
    input_files = step10_micro.i
    execute_on = 'timestep_end'
  []
[]

[Transfers]
  [keff_from_sub]
    type = MultiAppPostprocessorInterpolationTransfer
    direction = from_multiapp
    multi_app = micro
    variable = k_eff
    power = 1
    postprocessor = k_eff
    execute_on = 'timestep_end'
  []
  [temperature_to_sub]
    type = MultiAppVariableValueSamplePostprocessorTransfer
    direction = to_multiapp
    multi_app = micro
    source_variable = temperature
    postprocessor = temperature_in
    execute_on = 'timestep_end'
  []
[]

[Controls]
  [multiapp]
    type = TimePeriod
    disable_objects = 'MultiApps::micro Transfers::keff_from_sub Transfers::temperature_to_sub'
    start_time = '0'
    execute_on = 'initial'
  []
[]

[Outputs]
  [out]
    type = Exodus
    elemental_as_nodal = true
  []
[]

modules/richards/test/tests/gravity_head_1/gh_fu_20.i

# investigating validity of immobile saturation
# 5 elements, full upwinding

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 5
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGnone
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1 10 100 1000 10000'
    x = '0 10 100 1000 10000'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.3
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -1.0
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E0
  end_time = 1E5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = gh_fu_20
  execute_on = 'timestep_end final'
  interval = 10000
  exodus = true
[]

modules/phase_field/test/tests/MultiPhase/crosstermfreeenergy.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  nz = 0
  xmin = -8
  xmax = 8
  ymin = -8
  ymax = 8
  elem_type = QUAD4
[]

[AuxVariables]
  [./local_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./cross_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./local_free_energy]
    type = TotalFreeEnergy
    f_name = F0
    variable = local_energy
    additional_free_energy = cross_energy
  [../]
  [./cross_terms]
    type = CrossTermGradientFreeEnergy
    variable = cross_energy
    interfacial_vars = 'eta1 eta2 eta3'
    kappa_names = 'kappa11 kappa12 kappa13
                   kappa21 kappa22 kappa23
                   kappa31 kappa32 kappa33'
  [../]
[]

[Variables]
  [./eta1]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0.0
      y1 = 5.0
      radius = 5.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 10.0
    [../]
  [../]
  [./eta2]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = -4.0
      y1 = -2.0
      radius = 5.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 10.0
    [../]
  [../]
  [./eta3]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 4.0
      y1 = -2.0
      radius = 5.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 10.0
    [../]
  [../]
[]

[Kernels]
  [./dummy_diff1]
    type = Diffusion
    variable = eta1
  [../]
  [./dummy_time1]
    type = TimeDerivative
    variable = eta1
  [../]
  [./dummy_diff2]
    type = Diffusion
    variable = eta2
  [../]
  [./dummy_time2]
    type = TimeDerivative
    variable = eta2
  [../]
  [./dummy_diff3]
    type = Diffusion
    variable = eta3
  [../]
  [./dummy_tim3]
    type = TimeDerivative
    variable = eta3
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'F0   kappa11 kappa12 kappa13 kappa21 kappa22 kappa23 kappa31 kappa32 kappa33'
    prop_values = '0    11      12      13      12      22      23      13      23      33     '
  [../]

[]

[Executioner]
  type = Transient
  dt = 0.001
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = Exodus
    hide = 'eta1 eta2 eta3 local_energy'
  [../]
[]

modules/porous_flow/test/tests/jacobian/exponential_decay.i

# ExponentialDecay
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./exp_decay]
    type = PorousFlowExponentialDecay
    variable = u
    rate = rate
    reference = reference
  [../]
[]

[AuxVariables]
  [./rate]
  [../]
  [./reference]
  [../]
[]

[ICs]
  [./rate]
    type = RandomIC
    variable = rate
    min = -1
    max = 1
  [../]
  [./reference]
    type = RandomIC
    variable = reference
    min = 1
    max = 2
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

modules/porous_flow/test/tests/dirackernels/pls03_action.i

# Test that the upwinding works correctly.
#
# A poly-line sink sits at the centre of the element.
# It has length=4 and weight=0.5, and extracts fluid
# at a constant rate of
# (1 * relative_permeability) kg.m^-1.s^-1
# Since it sits at the centre of the element, it extracts
# equally from each node, so the rate of extraction from
# each node is
# (0.5 * relative_permeability) kg.s^-1
# including the length and weight effects.
#
# There is no fluid flow.
#
# The initial conditions are such that all nodes have
# relative_permeability=0, except for one which has
# relative_permeaility = 1.  Therefore, all nodes should
# remain at their initial porepressure, except the one.
#
# The porosity is 0.1, and the elemental volume is 2,
# so the fluid mass at the node in question = 0.2 * density / 4,
# where the 4 is the number of nodes in the element.
# In this simulation density = dens0 * exp(P / bulk), with
# dens0 = 100, and bulk = 20 MPa.
# The initial porepressure P0 = 10 MPa, so the final (after
# 1 second of simulation) is
# P(t=1) = 8.748592 MPa
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 2
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.0
      bulk_modulus = 2.0E7
      viscosity = 1.0
      density0 = 100.0
    [../]
  [../]
[]

[PorousFlowUnsaturated]
  porepressure = pp
  gravity = '0 0 0'
  fp = the_simple_fluid
  van_genuchten_alpha = 1.0E-7
  van_genuchten_m = 0.5
  relative_permeability_exponent = 2
  residual_saturation = 0.99
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    #function = if((x<1)&(y<0.5),1E7,-1E7)
    function = if((x<1)&(y>0.5),1E7,-1E7)
    #function = if((x>1)&(y<0.5),1E7,-1E7)
    #function = if((x>1)&(y>0.5),1E7,-1E7)
  [../]
[]

[UserObjects]
  [./pls_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
[]

[Materials]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0 0 0  0 0 0  0 0 0'
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]


[DiracKernels]
  [./pls]
    type = PorousFlowPolyLineSink
    fluid_phase = 0
    point_file = pls03.bh
    use_relative_permeability = true
    line_length = 4
    SumQuantityUO = pls_total_outflow_mass
    variable = pp
    p_or_t_vals = '0 1E7'
    fluxes = '1 1'
  [../]
[]


[Postprocessors]
  [./pls_report]
    type = PorousFlowPlotQuantity
    uo = pls_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p00]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
  [./p01]
    type = PointValue
    variable = pp
    point = '0 1 0'
    execute_on = timestep_end
  [../]
  [./p20]
    type = PointValue
    variable = pp
    point = '2 0 0'
    execute_on = timestep_end
  [../]
  [./p21]
    type = PointValue
    variable = pp
    point = '2 1 0'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 pls_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1
  dt = 1
  solve_type = NEWTON
[]

[Outputs]
  file_base = pls03_action
  exodus = false
  csv = true
  execute_on = timestep_end
[]

test/tests/restart/restart_subapp_not_master/complete_solve_no_subapp.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax =  1
  ymin = -1
  ymax =  1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0.0
  end_time = 4.0
  dt = 1.0
[]

[Outputs]
  file_base = complete_solve_no_subapp
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/denergy02.i

# 2phase, 1 component, with solid displacements, time derivative of energy-density
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pgas]
  [../]
  [./pwater]
  [../]
  [./temp]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
  [./pgas]
    type = RandomIC
    variable = pgas
    max = 1.0
    min = 0.0
  [../]
  [./pwater]
    type = RandomIC
    variable = pwater
    max = 0.0
    min = -1.0
  [../]
  [./temp]
    type = RandomIC
    variable = temp
    max = 1.0
    min = 0.0
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./dummy_pgas]
    type = Diffusion
    variable = pgas
  [../]
  [./dummy_pwater]
    type = Diffusion
    variable = pwater
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas temp pwater disp_x disp_y disp_z'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      cv = 1.3
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      cv = 0.7
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.7
    biot_coefficient = 0.9
    solid_bulk = 1
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.1
    density = 0.5
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = pgas
    capillary_pressure = pc
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/multiapps/loose_couple_time_adapt/end.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[MultiApps]
  [./dummy]
    type = TransientMultiApp
    input_files = adaptiveDT.i
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 0.006
  dt = 0.006
  nl_abs_tol = 1.0e-8
[]

[Outputs]
  exodus = true
  file_base = end
[]

modules/combined/examples/phase_field-mechanics/Conserved.i

#
# Example 1
# Illustrating the coupling between chemical and mechanical (elastic) driving forces.
# An oversized precipitate deforms under a uniaxial compressive stress
# Check the file below for comments and suggestions for parameter modifications.
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  nz = 0
  xmin = 0
  xmax = 50
  ymin = 0
  ymax = 50
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0
      y1 = 0
      radius = 25.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 50.0
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
  [../]

  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

#
# The AuxVariables and AuxKernels below are added to visualize the xx and yy stress tensor components
#
[AuxVariables]
  [./sigma11_aux]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sigma22_aux]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]
[AuxKernels]
  [./matl_sigma11]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = sigma11_aux
  [../]
  [./matl_sigma22]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = sigma22_aux
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1 5'
    block = 0
    #kappa = 0.1
    #mob = 1e-3
  [../]

  # simple chemical free energy with a miscibility gap
  [./chemical_free_energy]
    type = DerivativeParsedMaterial
    block = 0
    f_name = Fc
    args = 'c'
    constant_names       = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
    enable_jit = true
    derivative_order = 2
  [../]

  # undersized solute (voidlike)
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    # lambda, mu values
    C_ijkl = '7 7'
    # Stiffness tensor is created from lambda=7, mu=7 using symmetric_isotropic fill method
    fill_method = symmetric_isotropic
    # See RankFourTensor.h for details on fill methods
    # '15 15' results in a high stiffness (the elastic free energy will dominate)
    # '7 7' results in a low stiffness (the chemical free energy will dominate)
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    # eigenstrain coefficient
    # -0.1 will result in an undersized precipitate
    #  0.1 will result in an oversized precipitate
    function = 0.1*c
    args = c
    f_name = var_dep
    enable_jit = true
    derivative_order = 2
  [../]
  [./eigenstrain]
    type = ComputeVariableEigenstrain
    block = 0
    eigen_base = '1 1 1 0 0 0'
    prefactor = var_dep
    #outputs = exodus
    args = 'c'
    eigenstrain_name = eigenstrain
  [../]
  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y'
    eigenstrain_names = eigenstrain
  [../]
  [./elastic_free_energy]
    type = ElasticEnergyMaterial
    f_name = Fe
    block = 0
    args = 'c'
    derivative_order = 2
  [../]

  # Sum up chemical and elastic contributions
  [./free_energy]
    type = DerivativeSumMaterial
    block = 0
    f_name = F
    sum_materials = 'Fc Fe'
    args = 'c'
    derivative_order = 2
  [../]
[]

[BCs]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'top'

    # prescribed displacement
    # -5 will result in a compressive stress
    #  5 will result in a tensile stress
    value = -5
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
[]

[Preconditioning]
  # active = ' '
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type  -sub_pc_type '
  petsc_options_value = 'asm       lu'

  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10
  start_time = 0.0
  num_steps = 200

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 1
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/drucker_prager/small_deform3_outer_tip.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-1.7E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    smoother = 8
    mc_interpolation_scheme = outer_tip
    yield_function_tolerance = 1E-7
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-13
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3_outer_tip
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/xfem/test/tests/bimaterials/glued_bimaterials_2d.i

# This test is for two layer materials with different youngs modulus
# The global stress is determined by switching the stress based on level set values
# The material interface is marked by a level set function
# The two layer materials are glued together

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
  [../]
[]

[Mesh]
  displacements = 'disp_x disp_y'
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 5
    ny = 5
    xmin = 0.0
    xmax = 5.
    ymin = 0.0
    ymax = 5.
    elem_type = QUAD4
  []
  [./left_bottom]
    type = ExtraNodesetGenerator
    new_boundary = 'left_bottom'
    coord = '0.0 0.0'
    input = gen
  [../]
  [./left_top]
    type = ExtraNodesetGenerator
    new_boundary = 'left_top'
    coord = '0.0 5.'
    input = left_bottom
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Functions]
  [./ls_func]
    type = ParsedFunction
    value = 'y-2.5'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./a_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./a_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./a_strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./b_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./b_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./b_strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_xx
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_yy
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
    variable = stress_xy
  [../]
  [./a_strain_xx]
    type = RankTwoAux
    rank_two_tensor = A_total_strain
    index_i = 0
    index_j = 0
    variable = a_strain_xx
  [../]
  [./a_strain_yy]
    type = RankTwoAux
    rank_two_tensor = A_total_strain
    index_i = 1
    index_j = 1
    variable = a_strain_yy
  [../]
  [./a_strain_xy]
    type = RankTwoAux
    rank_two_tensor = A_total_strain
    index_i = 0
    index_j = 1
    variable = a_strain_xy
  [../]
  [./b_strain_xx]
    type = RankTwoAux
    rank_two_tensor = B_total_strain
    index_i = 0
    index_j = 0
    variable = b_strain_xx
  [../]
  [./b_strain_yy]
    type = RankTwoAux
    rank_two_tensor = B_total_strain
    index_i = 1
    index_j = 1
    variable = b_strain_yy
  [../]
  [./b_strain_xy]
    type = RankTwoAux
    rank_two_tensor = B_total_strain
    index_i = 0
    index_j = 1
    variable = b_strain_xy
  [../]
[]

[Constraints]
  [./dispx_constraint]
    type = XFEMSingleVariableConstraint
    use_displaced_mesh = false
    variable = disp_x
    alpha = 1e8
    geometric_cut_userobject = 'level_set_cut_uo'
  [../]
  [./dispy_constraint]
    type = XFEMSingleVariableConstraint
    use_displaced_mesh = false
    variable = disp_y
    alpha = 1e8
    geometric_cut_userobject = 'level_set_cut_uo'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_x
    function = 0.03*t
  [../]
  [./topy]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_y
    function = '0.03*t'
  [../]
[]

[Materials]
  [./elasticity_tensor_A]
    type = ComputeIsotropicElasticityTensor
    base_name = A
    youngs_modulus = 1e9
    poissons_ratio = 0.3
  [../]
  [./strain_A]
    type = ComputeSmallStrain
    base_name = A
  [../]
  [./stress_A]
    type = ComputeLinearElasticStress
    base_name = A
  [../]
  [./elasticity_tensor_B]
    type = ComputeIsotropicElasticityTensor
    base_name = B
    youngs_modulus = 1e5
    poissons_ratio = 0.3
  [../]
  [./strain_B]
    type = ComputeSmallStrain
    base_name = B
  [../]
  [./stress_B]
    type = ComputeLinearElasticStress
    base_name = B
  [../]
  [./combined_stress]
    type = LevelSetBiMaterialRankTwo
    levelset_positive_base = 'A'
    levelset_negative_base = 'B'
    level_set_var = ls
    prop_name = stress
  [../]
  [./combined_dstressdstrain]
    type = LevelSetBiMaterialRankFour
    levelset_positive_base = 'A'
    levelset_negative_base = 'B'
    level_set_var = ls
    prop_name = Jacobian_mult
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'bt'

# controls for linear iterations
  l_max_its = 20
  l_tol = 1e-3

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-7

# time control
  start_time = 0.0
  dt = 0.1
  num_steps = 2

  max_xfem_update = 1
[]

[Outputs]
  exodus = true
  execute_on = timestep_end
  csv = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/elastic_patch/elastic_patch_rz_sm.i

#
# This problem is taken from the Abaqus verification manual:
#   "1.5.4 Patch test for axisymmetric elements"
# The stress solution is given as:
#   xx = yy = zz = 2000
#   xy = 400
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_patch_rz.e
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '1e-3*x'
  [../]
  [./uz]
    type = ParsedFunction
    value = '1e-3*(x+y)'
  [../]
  [./body]
    type = ParsedFunction
    value = '-400/x'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    use_displaced_mesh = false
  [../]
[]

[Kernels]
  [./body]
    type = BodyForce
    variable = disp_y
    value = 1
    function = body
  [../]

  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = ur
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = uz
  [../]

  [./temp]
    type = DirichletBC
    variable = temp
    boundary = 10
    value = 117.56
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.25

    temp = temp
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = 1
    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    block = 1
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  file_base = elastic_patch_rz_out
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/frictionless_penalty_contact_line_search.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2. The gold file is run
#  on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
  [./tot_nonlin_it]
    type = CumulativeValuePostprocessor
    postprocessor = nonlinear_its
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-ksp_monitor_true_residual'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'contact'
  contact_line_search_ltol = .5
  contact_line_search_allowed_lambda_cuts = 0

  l_max_its = 100
  nl_max_its = 20
  dt = 0.1
  end_time = 3
  # num_steps = 30
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01
[]

[Outputs]
  perf_graph = true
  print_linear_residuals = false
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cto14.i

# Jacobian check for nonlinear, multi-surface plasticity.
# Returns to an edge of the tensile yield surface
# This is a very nonlinear test and a delicate test because it perturbs around
# an edge of the yield function where some derivatives are not well defined
#
# Plasticity models:
# Mohr-Coulomb with cohesion = 40MPa, friction angle = 35deg, dilation angle = 5deg
# Tensile with strength = 1MPa
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# NOTE: The yield function tolerances here are set at 100-times what i would usually use
# This is because otherwise the test fails on the 'pearcey' architecture.
# This is because identical stress tensors yield slightly different eigenvalues
# (and hence return-map residuals) on 'pearcey' than elsewhere, which results in
# a different number of NR iterations are needed to return to the yield surface.
# This is presumably because of compiler internals, or the BLAS routines being
# optimised differently or something similar.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]



[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./linesearch]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ld]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./constr_added]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int5]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int6]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int7]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int8]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./linesearch]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = linesearch
  [../]
  [./ld]
    type = MaterialRealAux
    property = plastic_linear_dependence_encountered
    variable = ld
  [../]
  [./constr_added]
    type = MaterialRealAux
    property = plastic_constraints_added
    variable = constr_added
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int0
    index = 0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int1
    index = 1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int2
    index = 2
  [../]
  [./int3]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int3
    index = 3
  [../]
  [./int4]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int4
    index = 4
  [../]
  [./int5]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int5
    index = 5
  [../]
  [./int6]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int6
    index = 6
  [../]
  [./int7]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int7
    index = 7
  [../]
  [./int8]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int8
    index = 8
  [../]
[]

[Postprocessors]
  [./max_int0]
    type = ElementExtremeValue
    variable = int0
    outputs = console
  [../]
  [./max_int1]
    type = ElementExtremeValue
    variable = int1
    outputs = console
  [../]
  [./max_int2]
    type = ElementExtremeValue
    variable = int2
    outputs = console
  [../]
  [./max_int3]
    type = ElementExtremeValue
    variable = int3
    outputs = console
  [../]
  [./max_int4]
    type = ElementExtremeValue
    variable = int4
    outputs = console
  [../]
  [./max_int5]
    type = ElementExtremeValue
    variable = int5
    outputs = console
  [../]
  [./max_int6]
    type = ElementExtremeValue
    variable = int6
    outputs = console
  [../]
  [./max_int7]
    type = ElementExtremeValue
    variable = int7
    outputs = console
  [../]
  [./max_int8]
    type = ElementExtremeValue
    variable = int8
    outputs = console
  [../]
  [./max_iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./av_linesearch]
    type = ElementAverageValue
    variable = linesearch
    outputs = 'console csv'
  [../]
  [./av_ld]
    type = ElementAverageValue
    variable = ld
    outputs = 'console csv'
  [../]
  [./av_constr_added]
    type = ElementAverageValue
    variable = constr_added
    outputs = 'console csv'
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console csv'
  [../]
[]


[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 4E1
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    yield_function_tolerance = 1.0E-4  # Note larger value
    shift = 1.0E-4                     # Note larger value
    internal_constraint_tolerance = 1.0E-7
  [../]

  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E0
  [../]
  [./tensile]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = ts
    yield_function_tolerance = 1.0E-4  # Note larger value
    shift = 1.0E-4                     # Note larger value
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '1.0E3 1.3E3'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '10 12 -14  12 5 20  -14 20 8'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-7

    plastic_models = 'tensile mc'
    max_NR_iterations = 5
    specialIC = 'rock'
    deactivation_scheme = 'safe'
    min_stepsize = 1
    tangent_operator = nonlinear
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]


[Outputs]
  file_base = cto14
  exodus = false
  csv = true
[]

modules/tensor_mechanics/test/tests/notched_plastic_block/cmc_smooth.i

# Uses a multi-smoothed version of capped-Mohr-Coulomb (via CappedMohrCoulombStressUpdate and ComputeMultipleInelasticStress) to simulate the following problem.
# A cubical block is notched around its equator.
# All of its outer surfaces have roller BCs, but the notched region is free to move as needed
# The block is initialised with a high hydrostatic tensile stress
# Without the notch, the BCs do not allow contraction of the block, and this stress configuration is admissible
# With the notch, however, the interior parts of the block are free to move in order to relieve stress, and this causes plastic failure
# The top surface is then pulled upwards (the bottom is fixed because of the roller BCs)
# This causes more failure
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 9
    ny = 9
    nz = 9
    xmin = 0
    xmax = 0.1
    ymin = 0
    ymax = 0.1
    zmin = 0
    zmax = 0.1
  []
  [block_to_remove_xmin]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 -0.01 0.045'
    top_right = '0.01 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = generated_mesh
  []
  [block_to_remove_xmax]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0.09 -0.01 0.045'
    top_right = '0.11 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_xmin
  []
  [block_to_remove_ymin]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 -0.01 0.045'
    top_right = '0.11 0.01 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_xmax
  []
  [block_to_remove_ymax]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 0.09 0.045'
    top_right = '0.11 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_ymin
  []
  [remove_block]
    type = BlockDeletionGenerator
    block_id = 1
    input = block_to_remove_ymax
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_zz'
    eigenstrain_names = ini_stress
  [../]
[]

[Postprocessors]
  [./uz]
    type = PointValue
    point = '0 0 0.1'
    use_displaced_mesh = false
    variable = disp_z
  [../]
  [./s_zz]
    type = ElementAverageValue
    use_displaced_mesh = false
    variable = stress_zz
  [../]
  [./num_res]
    type = NumResidualEvaluations
  [../]
  [./nr_its] # num_iters is the average number of NR iterations encountered per element in this timestep
    type = ElementAverageValue
    variable = num_iters
  [../]
  [./max_nr_its] # max_num_iters is the maximum number of NR iterations encountered in the element during the whole simulation
    type = ElementExtremeValue
    variable = max_num_iters
  [../]
  [./runtime]
    type = PerfGraphData
    data_type = TOTAL
    section_name = 'Root'
  [../]
[]

[BCs]
  # back=zmin, front=zmax, bottom=ymin, top=ymax, left=xmin, right=xmax
  [./xmin_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./xmax_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./ymin_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./ymax_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.0
  [../]
  [./zmin_zzero]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = '0'
  [../]
  [./zmax_disp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '1E-6*max(t,0)'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./num_iters]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./max_num_iters]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./num_iters_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = num_iters
  [../]
  [./max_num_iters_auxk]
    type = MaterialRealAux
    property = max_plastic_NR_iterations
    variable = max_num_iters
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 3E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E16
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 5E6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 10
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 16E9
    poissons_ratio = 0.25
  [../]
  [./mc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    smoothing_tol = 0.2E6
    yield_function_tol = 1E-5
    perfect_guess = false # this is so we can observe some Newton-Raphson iterations, for comparison with other models, and it is not optimal in any real-life simulations
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
  [./strain_from_initial_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2.5E6 0 0  0 2.5E6 0  0 0 2.5E6'
    eigenstrain_name = ini_stress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  start_time = -1
  end_time = 10
  dt = 1
  solve_type = NEWTON
  type = Transient

  l_tol = 1E-2
  nl_abs_tol = 1E-5
  nl_rel_tol = 1E-7
  l_max_its = 200
  nl_max_its = 400

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]


[Outputs]
  file_base = cmc_smooth
  perf_graph = true
  exodus = false
  csv = true
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test4.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 4
    ny = 4
    nz = 1
    xmin = 0
    xmax = 4
    ymin = 0
    ymax = 4
    zmin = 0
    zmax = 1
  []

  [./SubdomainBoundingBox]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    bottom_left = '1 1 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeletionGenerator
    block_id = 1
    input = SubdomainBoundingBox
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/torque_reaction/torque_reaction_3D_tm.i

# Scalar torque reaction

# This test computes the sum of the torques acting on a single element cube mesh.
# Equal displacements in the x and the z are applied along the cube top to
# create a shear force along the (1, 0, 1) direction.  The rotation origin is
# set to the middle of the bottom face of the cube (0.5, 0, 0.5), and the axis of
# rotation direction vector  used to compute the torque reaction is set to (-1, 0, 1).
# Torque is calculated for the four nodes on the top of the cube. The projection
# of the node coordinates is zero for nodes 3 and 6, +1 for node 7, and -1 for
# node 2 from the selection of the direction vector and the rotation axis origin.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[GlobalParams]
  volumetric_locking_correction=true
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    save_in = 'saved_x saved_y saved_z'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]
  [./top_shear_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = top
    function = '0.01*t'
  [../]
  [./top_shear_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = top
    function = '0.01*t'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./small_strain]
    type = ComputeFiniteStrain
    block = 0
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 30
  nl_max_its = 20
  nl_abs_tol = 1e-14
  nl_rel_tol = 1e-12
  l_tol = 1e-8

  start_time = 0.0
  dt = 0.5

  end_time = 1
  num_steps = 2
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./torque]
    type = TorqueReaction
    boundary = top
    reaction_force_variables = 'saved_x saved_y saved_z'
    axis_origin = '0.5 0. 0.5'
    direction_vector = '-1. 0. 1.'
  [../]
[]

[Outputs]
  file_base = torque_reaction_3D_tm_out
  exodus = true
[]

test/tests/outputs/console/console_transient.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = -1
  end_time = 0
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  verbose = true
[]


[Outputs]
  execute_on = 'timestep_end'
  [./screen]
    type = Console
    verbose = true
    time_precision = 6
    execute_on = 'failed nonlinear linear timestep_begin timestep_end'
  [../]
[]

modules/phase_field/test/tests/flood_counter_aux_test/flood_counter_boundary_restrictable.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  nz = 0

  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./bubble_map]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  active = 'diff forcing_1 forcing_2 forcing_3 forcing_4 dot'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing_1]
    type = GaussContForcing
    variable = u
    x_center = 1.0
    y_center = 1.0
    x_spread = 0.5
    y_spread = 0.5
    amplitude = 2.0
  [../]

  [./forcing_2]
    type = GaussContForcing
    variable = u
    x_center = 20.0
    y_center = 39.0
    x_spread = 0.5
    y_spread = 0.5
    amplitude = 2.0
  [../]

  [./forcing_3]
    type = GaussContForcing
    variable = u
    x_center = 39.0
    y_center = 20.0
    x_spread = 0.5
    y_spread = 0.5
    amplitude = 2.0
  [../]

  [./forcing_4]
    type = GaussContForcing
    variable = u
    x_center = 15.0
    y_center = 15.0
    x_spread = 0.5
    y_spread = 0.5
    amplitude = 2.0
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./mapper]
    type = FeatureFloodCountAux
    variable = bubble_map
    execute_on = 'initial timestep_end'
    flood_counter = bubbles
  [../]
[]

[Postprocessors]
  [./bubbles]
    type = FeatureFloodCount
    variable = u
    threshold = 0.1
    execute_on = 'initial timestep_end'
    boundary = 'top right left bottom'
  [../]
[]

[Executioner]
  type = Transient
  dt = 4.0
  num_steps = 2
[]

[Outputs]
  execute_on = 'timestep_end'
  csv = true
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest4.i

# 3D, interior
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 1
  xmin = 0
  xmax = 4
  ymin = 0
  ymax = 4
  zmin = 0
  zmax = 1
[]

[MeshModifiers]
  [./SubdomainBoundingBox]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '1 1 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeleter
    block_id = 1
    depends_on = SubdomainBoundingBox
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-normal-lm-mortar-fb-tangential-lm-mortar-disp.i

starting_point = 2e-1

# We offset slightly so we avoid the case where the bottom of the slave block and the top of the
# master block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
  scaling = 1e0
[]

[Mesh]
  [./file_mesh]
    type = FileMeshGenerator
    file = long-bottom-block-1elem-blocks-coarse.e
  [../]
[]

[Variables]
  [./disp_x]
    block = '1 2'
    # order = SECOND
  [../]
  [./disp_y]
    block = '1 2'
    # order = SECOND
  [../]
  [./frictional_normal_lm]
    block = 3
    # family = MONOMIAL
    # order = CONSTANT
  [../]
  [./frictional_tangential_lm]
    block = 3
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [frictional_normal_lm]
    type = NormalNodalLMMechanicalContact
    slave = 10
    master = 20
    variable = frictional_normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = min
  [../]
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = frictional_normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = frictional_normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [frictional_tangential_lm]
    type = TangentialMortarLMMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = frictional_tangential_lm
    slave_variable = disp_x
    slave_disp_y = disp_y
    use_displaced_mesh = true
    compute_primal_residuals = false
    contact_pressure = frictional_normal_lm
    friction_coefficient = .1
    ncp_function_type = fb
  []
  [tangential_x]
    type = TangentialMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = frictional_tangential_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [tangential_y]
    type = TangentialMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = frictional_tangential_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'

  # [./Predictor]
  #   type = SimplePredictor
  #   scale = 1.0
  # [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
  # checkpoint = true
  # [./dofmap]
  #   type = DOFMap
  #   execute_on = 'initial'
  # [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = frictional_normal_lm
    subdomain = '3'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/combined/test/tests/internal_volume/rspherical.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a space considering
#   an embedded volume inside.
#
# The mesh is composed of two blocks with an interior cavity of volume 3.
#   The volume of each of the blocks is also 3.  The volume of the entire sphere
#   is 9.
#
[GlobalParams]
  displacements = 'disp_x'
[]

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]
  file = meshes/rspherical.e
  construct_side_list_from_node_list = true
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e4
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    incremental = true
    strain = FINITE
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2 3 4'
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 3'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 3'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 10
    component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./intVol1]
    type = InternalVolume
    boundary = 2
    component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./intVol1Again]
    type = InternalVolume
    boundary = 9
    component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./intVol2]
    type = InternalVolume
    boundary = 11
    component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./intVolTotal]
    type = InternalVolume
    boundary = 4
    component = 0
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/mobility_derivative/mobility_derivative_direct_coupled_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 30
  ymax = 30
  elem_type = QUAD4
[]

[Variables]
  [./c]
    family = HERMITE
    order = THIRD
  [../]
  [./d]
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 15
    y1 = 15
    radius = 12
    variable = c
    int_width = 3
    invalue = 1
    outvalue = 0
  [../]
  [./d_IC]
    type = BoundingBoxIC
    x1 = 0
    x2 = 15
    y1 = 0
    y2 = 30
    inside = 1.0
    outside = 0.0
    variable = d
  [../]
[]

[Kernels]
  [./c_bulk]
    type = CahnHilliard
    variable = c
    mob_name = M
    f_name = F
    args = d
  [../]
  [./c_int]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
    args = d
  [../]
  [./c_dot]
    type = TimeDerivative
    variable = c
  [../]
  [./d_dot]
    type = TimeDerivative
    variable = d
  [../]
  [./d_diff]
    type = MatDiffusion
    variable = d
    diffusivity = diffusivity
  [../]
[]

[Materials]
  [./kappa]
    type = GenericConstantMaterial
    prop_names = kappa_c
    prop_values = 2.0
  [../]
  [./mob]
    type = DerivativeParsedMaterial
    f_name = M
    args = 'c d'
    function = if(d>0.001,d,0.001)*if(c<0,0.5,if(c>1,0.5,1-0.5*c^2))
    derivative_order = 2
  [../]
  [./free_energy]
    type = MathEBFreeEnergy
    f_name = F
    c = c
  [../]
  [./d_diff]
    type = GenericConstantMaterial
    prop_names = diffusivity
    prop_values = 1.0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = BDF2

  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31      lu      1'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 50
  nl_rel_tol = 1.0e-10

  dt = 0.25
  num_steps = 2
[]

[Outputs]
  execute_on = 'timestep_end'
  [./oversample]
    refinements = 2
    type = Exodus
  [../]
[]

modules/porous_flow/test/tests/dirackernels/bh05.i

# unsaturated
# injection
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '500 500 1E1'
    x = '4000 5000 6500'
  [../]
[]

[Variables]
  [./pp]
    initial_condition = -2E5
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1e-5
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityFLAC
    m = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    variable = pp
    SumQuantityUO = borehole_total_outflow_mass
    point_file = bh03.bh
    fluid_phase = 0
    bottom_p_or_t = 0
    unit_weight = '0 0 0'
    use_mobility = true
    character = -1
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 6500
  solve_type = NEWTON
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = bh05
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/peridynamics/test/tests/simple_tests/2D_finite_strain_NOSPD.i


[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 8
    ny = 8
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1003
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1001
    function = '0.01*t'
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
    strain = FINITE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e8
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeFiniteStrainNOSPD
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  end_time = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

[Outputs]
  file_base = 2D_finite_strain_NOSPD
  exodus = true
[]

modules/richards/test/tests/jacobian_2/jn_fu_22.i

# two phase
# unsaturated = true

# gravity = true
# supg = true
# transient = true
# piecewiselinearflux = true, with fully_upwind = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  fully_upwind = true
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = 'left right'
    pressures = '-0.9 0.9'
    bare_fluxes = '1E8 2E8'  # can not make too high as finite-difference constant state bums out due to precision loss
    use_mobility = true
    use_relperm = true
    variable = pwater
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn08
  exodus = false
[]

test/tests/controls/time_periods/dampers/control.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_rel_tol = 0.95e-8
[]

[Postprocessors]
  [./nlin]
    type = NumNonlinearIterations
  [../]
[]

[Dampers]
  [./const_damp]
    type = ConstantDamper
    damping = 0.9
  [../]
[]

[Outputs]
  csv = true
[]

[Controls]
  [./damping_control]
    type = TimePeriod
    disable_objects = '*::const_damp'
    start_time = 0.25
    execute_on = 'initial timestep_begin'
  [../]
[]

test/tests/dirackernels/point_caching/point_caching_moving_mesh.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
  elem_type = QUAD4
  uniform_refine = 4

  # Mesh is dispaced by Aux variables computed by predetermined functions
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./disp_x_fn]
    type = ParsedFunction
    value = t
  [../]

  [./disp_y_fn]
    type = ParsedFunction
    value = 0
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./time_derivative]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./disp_x_auxk]
    type = FunctionAux
    variable = disp_x
    function = disp_x_fn
  [../]

  [./disp_y_auxk]
    type = FunctionAux
    variable = disp_y
    function = disp_y_fn
  [../]
[]

[DiracKernels]
  [./point_source]
    type = CachingPointSource
    variable = u
    # This is appropriate for this test, since we want the Dirac
    # points to be found in elements on the displaced Mesh.
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  num_steps = 4
  dt = .1
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/side_integral/side_integral.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 6
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.55 1.0 0.55 0.0'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./top]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 3
  [../]

  [./bottom]
    type = DirichletBC
    variable = u
    boundary = 0
    value = 2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Postprocessors]
  [./top_surface]
    type = SideIntegralVariablePostprocessor
    variable = u
    boundary = 2
  [../]
  [./bottom_surface]
    type = SideIntegralVariablePostprocessor
    variable = u
    boundary = 0
  [../]
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/poro_elasticity/undrained_oedometer.i

# An undrained oedometer test on a saturated poroelastic sample.
#
# The sample is a single unit element, with roller BCs on the sides
# and bottom.  A constant displacement is applied to the top: disp_z = -0.01*t.
# There is no fluid flow.
#
# Under these conditions
# porepressure = -(Fluid bulk modulus)*log(1 - 0.01t)
# stress_xx = (bulk - 2*shear/3)*disp_z/L (remember this is effective stress)
# stress_zz = (bulk + 4*shear/3)*disp_z/L (remember this is effective stress)
# where L is the height of the sample (L=1 in this test)
#
# Parameters:
# Bulk modulus = 2
# Shear modulus = 1.5
# fluid bulk modulus = 1
#
# Desired output:
# zdisp = -0.01*t
# p0 = 1*log(1-0.01t)
# stress_xx = stress_yy = -0.01*t
# stress_zz = -0.04*t
#
# Regarding the "log" - it just comes from conserving fluid mass

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./basefixed]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  [../]
  [./top_velocity]
    type = FunctionDirichletBC
    variable = disp_z
    function = -0.01*t
    boundary = front
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = porepressure
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1
  [../]
[]

[Postprocessors]
  [./fluid_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
    use_displaced_mesh = true
  [../]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]

[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-8 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = undrained_oedometer
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/solid_mechanics/spherical_shell/sm/2D-RZ_test_sm.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces. Three versions of the test are
# provided, assuming 1D spherical geometry (1D-SPH), 2D axisymmetic geometry
# (2D-RZ), and 3D geometry (3D). The tests demonstrate that all three geometric
# approaches produce the same correct solution.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000, respectively. The resulting compressive tangential
# stress is largest at the inner wall and, from the above equation, has a value
# of -271429.
#
# RESULTS are below. Since stresses are average element values, values for the
# edge element and one-element-in are used to extrapolate the stress to the
# inner surface. The vesrion of the tests that are checked use the coarsest meshes.
#
#  Mesh    Radial elem   S(edge elem)  S(one elem in)  S(extrap to surf)
# 1D-SPH       12          -264842      -254419        -270053
# 2D-RZ        12          -265007      -254668        -270177
#  3D          12 (4x4)    -258922      -251099        -262834
#  3D          12 (6x6)    -262194      -252969        -266807
#
# 1D-SPH       48          -269679      -266390        -271323
# 2D-RZ        48          -269723      -266470        -271350
#  3D          48          -268617      -265717        -270067
#
# 1D-SPH      100          -270580      -268932        -271404
# 2D-RZ       100          -270587      -268946        -271408
#
# The numerical solution converges to the analytical solution as the mesh is
# refined.

[GlobalParams]
  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  volumetric_locking_correction = false
[]

[Mesh]
  file = 2D-RZ_mesh.e
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
[]

[BCs]

# pin particle along symmetry planes
  [./no_disp_x]
    type = DirichletBC
    variable = disp_x
    boundary = xzero
    value = 0.0
  [../]

  [./no_disp_y]
    type = DirichletBC
    variable = disp_y
    boundary = yzero
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = outer
    component = 0
    factor = 200000
  [../]

 [./exterior_pressure_y]
    type = Pressure
    variable = disp_y
    boundary = outer
    component = 1
    factor = 200000
  [../]

  [./interior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = inner
    component = 0
    factor = 100000
  [../]

  [./interior_pressure_y]
    type = Pressure
    variable = disp_y
    boundary = inner
    component = 1
    factor = 100000
  [../]
[]

[Materials]

 [./fuel_disp]
    type = Elastic
    formulation = NonlinearRZ
    block = 1
    disp_r = disp_x
    disp_z = disp_y
    youngs_modulus = 1e10
    poissons_ratio = .345
    thermal_expansion = 0
  [../]
[]

[Debug]
    show_var_residual_norms = true
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

   start_time = 0.0
   end_time = 1
   num_steps = 1000

  dtmax = 5e6
  dtmin = 1
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    optimal_iterations = 6
    iteration_window = 0
    linear_iteration_ratio = 100
  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

#  [./Quadrature]
#    order = THIRD
#  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
[]

modules/navier_stokes/test/tests/ins/lid_driven/ad_lid_driven.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 1.0
    ymin = 0
    ymax = 1.0
    nx = 16
    ny = 16
    elem_type = QUAD9
  []
  [./corner_node]
    type = ExtraNodesetGenerator
    new_boundary = 'pinned_node'
    nodes = '0'
    input = gen
  [../]
[]

[AuxVariables]
  [vel_x]
    order = SECOND
  []
  [vel_y]
    order = SECOND
  []
[]

[AuxKernels]
  [vel_x]
    type = VectorVariableComponentAux
    variable = vel_x
    vector_variable = velocity
    component = 'x'
  []
  [vel_y]
    type = VectorVariableComponentAux
    variable = vel_y
    vector_variable = velocity
    component = 'y'
  []
[]

[Variables]
  [./velocity]
    order = SECOND
    family = LAGRANGE_VEC
  [../]

  [./T]
    order = SECOND
    [./InitialCondition]
      type = ConstantIC
      value = 1.0
    [../]
  [../]

  [./p]
  [../]
[]

[Kernels]
  [./mass]
    type = INSADMass
    variable = p
  [../]

  [./momentum_time]
    type = INSADMomentumTimeDerivative
    variable = velocity
  [../]

  [./momentum_convection]
    type = INSADMomentumAdvection
    variable = velocity
  [../]

  [./momentum_viscous]
    type = INSADMomentumViscous
    variable = velocity
  [../]

  [./momentum_pressure]
    type = INSADMomentumPressure
    variable = velocity
    p = p
    integrate_p_by_parts = true
  [../]

 [./temperature_time]
   type = ADHeatConductionTimeDerivative
   variable = T
   specific_heat = 'cp'
   density_name = 'rho'
 [../]

 [./temperature_advection]
   type = INSADTemperatureAdvection
   variable = T
   velocity = velocity
 [../]

 [./temperature_conduction]
   type = ADHeatConduction
   variable = T
   thermal_conductivity = 'k'
 [../]
[]

[BCs]
  [./no_slip]
    type = VectorFunctionDirichletBC
    variable = velocity
    boundary = 'bottom right left'
  [../]

  [./lid]
    type = VectorFunctionDirichletBC
    variable = velocity
    boundary = 'top'
    function_x = 'lid_function'
  [../]

  [./T_hot]
    type = DirichletBC
    variable = T
    boundary = 'bottom'
    value = 1
  [../]

  [./T_cold]
    type = DirichletBC
    variable = T
    boundary = 'top'
    value = 0
  [../]

  [./pressure_pin]
    type = DirichletBC
    variable = p
    boundary = 'pinned_node'
    value = 0
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    prop_names = 'rho mu cp k'
    prop_values = '1  1  1  .01'
  [../]
  [ins_mat]
    type = INSADMaterial
    velocity = velocity
    pressure = p
    transient_term = true
    integrate_p_by_parts = true
  []
[]

[Functions]
  [./lid_function]
    # We pick a function that is exactly represented in the velocity
    # space so that the Dirichlet conditions are the same regardless
    # of the mesh spacing.
    type = ParsedFunction
    value = '4*x*(1-x)'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    solve_type = 'NEWTON'
  [../]
[]

[Executioner]
  type = Transient
  # Run for 100+ timesteps to reach steady state.
  num_steps = 5
  dt = .5
  dtmin = .5
  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -sub_pc_factor_levels'
  petsc_options_value = 'asm      2               ilu          4'
  line_search = 'none'
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-13
  nl_max_its = 6
  l_tol = 1e-6
  l_max_its = 500
[]

[Outputs]
  file_base = lid_driven_out
  exodus = true
  perf_graph = true
[]

modules/phase_field/test/tests/grain_boundary_area/diagonal.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 100
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Variables]
  [./gr0]
    [./InitialCondition]
      type = FunctionIC
      function = 'd:=(x-y)*80;if(d<pi&d>-pi,sin(d/2)/2+0.5,if(d<0,0,1))'
    [../]
  [../]
  [./gr1]
    [./InitialCondition]
      type = FunctionIC
      function = 'd:=(x-y)*80;1-if(d<pi&d>-pi,sin(d/2)/2+0.5,if(d<0,0,1))'
    [../]
  [../]
[]

[Postprocessors]
  [./area]
    type = GrainBoundaryArea
    grains_per_side = 2
  [../]
[]

[Problem]
  kernel_coverage_check = false
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  csv = true
  execute_on = timestep_end
[]

test/tests/markers/two_circle_marker/two_circle_marker_gaussian_ic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./gaussian_ic]
    type = FunctionIC
    variable = u
    function = gaussian_2d
  [../]
[]

[Functions]
  [./gaussian_2d]
    type = ParsedFunction
    value = exp(-((x-x0)*(x-x0)+(y-y0)*(y-y0))/2.0/sigma/sigma)
    vars = 'sigma x0 y0'
    vals = '0.05 0.35 0.25'
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.02
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 6
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  initial_steps = 1
  initial_marker = two_circle_marker
  cycles_per_step = 1
  marker = two_circle_marker
  max_h_level = 1
  [./Markers]
    [./two_circle_marker]
      type = TwoCircleMarker
      point1 = '0.5 0.5 0'
      radius1 = 0.3
      point2 = '0.35 0.25 0'
      radius2 = 0.3
      shut_off_time = 0.15
      inside = refine
      outside = coarsen
    [../]
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    print_mesh_changed_info = true
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cto13.i

# checking jacobian for nonlinear plasticity (single surface, smoothed MohrCoulomb)
# note: must have min_stepsize=1 otherwise the nonlinearities compound and make the jacobian more inaccurate


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-11
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6 5 4  5 7 2  4 2 2'
    eigenstrain_name = ini_stress
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-11
    plastic_models = mc
    tangent_operator = nonlinear
    min_stepsize = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/time_steppers/cutback_factor_at_failure/constant_dt_cutback.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Problem]
  type = FailingProblem
  fail_step = 3
[]

[Executioner]
  type = Transient
  num_steps = 10
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
    cutback_factor_at_failure = 0.8
  [../]
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/jacobian_2/jn_lumped_17.i

# two phase
# water saturated

# gravity = true
# supg = true
# transient = true


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 0.5E-3'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      block = 0
      function = init_p
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      block = 0
      function = init_p
    [../]
  [../]
[]

[Functions]
  [./init_p]
    type = ParsedFunction
    value = x+0.6*y+0.3*z
  [../]
[]

[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn17
  exodus = false
[]

test/tests/misc/check_error/missing_required_coupled.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 20
  ny = 10
  elem_type = QUAD9
[]

[Functions]
  [./bc_fn_v]
    type = ParsedFunction
    value = (x*x+y*y)
  [../]
[]

[Variables]
  [./v]
    family = LAGRANGE
    order = SECOND
  [../]

  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[Kernels]
  # V equation
  [./td_v]
    type = TimeDerivative
    variable = v
  [../]
  [./diff_v]
    type = CoefDiffusion
    variable = v
    coef = 0.5
  [../]
  [./conv_v]
    type = CoupledConvection
    variable = v
    # Coupled parameter is missing for CoupledConvection
  [../]
[]

[BCs]
  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = 'top'
    function = bc_fn_v
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  dt = 0.05
  num_steps = 10
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/solid_mechanics/test/tests/combined_creep_plasticity/combined_stress_relaxation_sm.i

#
# 1x1x1 unit cube with constant displacement on top face
#
# This problem was taken from "Finite element three-dimensional elastic-plastic
#    creep analysis" by A. Levy, Eng. Struct., 1981, Vol. 3, January, pp. 9-16.
#
# The problem is a one-dimensional creep analysis.  The top face is displaced 0.01
#    units and held there.  The stress relaxes in time according to the creep law.
#
# The analytic solution to this problem is (contrary to what is shown in the paper):
#
#                /       (E*ef)^3     \^(1/3)
#    stress_yy = |--------------------|
#                \ 3*a*E^4*ef^3*t + 1 /
#
#    where E  = 2.0e11  (Young's modulus)
#          a  = 3e-26  (creep coefficient)
#          ef = 0.01   (displacement)
#          t  = 2160.0    (time)
#
#    such that the analytical solution is computed to be 2.9518e3 Pa
#
# Averaged over the single element block, MOOSE calculates the stress in the yy direction to be
#     to be 3.046e3 Pa, which is a 3.2% error from the analytical solution.
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1e-2 1e-1 1e0 1e1 1e2'
    x = '0    7e-1 7e0 7e1 1e2'
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./creep_strain_xx]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_xx
    index = 0
  [../]
  [./creep_strain_yy]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_yy
    index = 1
  [../]
  [./creep_strain_zz]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_zz
    index = 2
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]
[]

[BCs]
  [./u_top_pull]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.01
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./creep]
    type = PowerLawCreep
    block = 0
    youngs_modulus = 2.0e11
    poissons_ratio = 0.3
    coefficient = 3.0e-26
    n_exponent = 4
    activation_energy = 0.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    relative_tolerance = 1e-14
    absolute_tolerance = 1e-14
    formulation = Nonlinear3D
  [../]
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
[]

[Executioner]
  type = Transient
#  petsc_options = '-snes_mf_operator -ksp_monitor -snes_ksp_ew'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-5
  nl_abs_tol = 1e-8
  l_tol = 1e-5
  start_time = 0.0
  end_time = 2160

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  exodus = true
  file_base = combined_stress_relaxation_out
[]

modules/tensor_mechanics/test/tests/scalar_material_damage/scalar_material_damage_creep.i

# This is a basic test of the system for continuum damage mechanics
# materials. It uses ScalarMaterialDamage for the damage model,
# which simply gets its damage index from another material. In this
# case, we prescribe the evolution of the damage index using a
# function. A single element has a fixed prescribed displacement
# on one side that puts the element in tension, and then the
# damage index evolves from 0 to 1 over time, and this verifies
# that the stress correspondingly drops to 0.

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
[]

[AuxVariables]
  [damage_index]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[Modules/TensorMechanics/Master]
  [all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_xx strain_xx creep_strain_xx'
  []
[]

[AuxKernels]
  [damage_index]
    type = MaterialRealAux
    variable = damage_index
    property = damage_index_prop
    execute_on = timestep_end
  []
[]

[BCs]
  [symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  []
  [symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  []
  [symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  []
  [axial_load]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.01
  []
[]

[Functions]
  [damage_evolution]
    type = PiecewiseLinear
    xy_data = '0.0   0.0
               0.1   0.0
               2.1   2.0'
  []
[]

[Materials]
  [damage_index]
    type = GenericFunctionMaterial
    prop_names = damage_index_prop
    prop_values = damage_evolution
  []
  [damage]
    type = ScalarMaterialDamage
    damage_index = damage_index_prop
  []
  [stress]
    type = ComputeMultipleInelasticStress
    damage_model = damage
    inelastic_models = 'creep'
  []
  [kelvin_voigt]
    type = GeneralizedKelvinVoigtModel
    creep_modulus = '10e9 10e9'
    creep_viscosity = '1 10'
    poisson_ratio = 0.2
    young_modulus = 10e9
  []
  [creep]
    type = LinearViscoelasticStressUpdate
  []
[]

[UserObjects]
  [./update]
    type = LinearViscoelasticityManager
    viscoelastic_model = kelvin_voigt
  [../]
[]

[Postprocessors]
  [stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  []
  [strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  []
  [./creep_strain_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
  [../]
  [damage_index]
    type = ElementAverageValue
    variable = damage_index
  []
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  l_max_its  = 50
  l_tol      = 1e-8
  nl_max_its = 20
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8

  dt = 0.1
  dtmin = 0.001
  end_time = 1.1
[]

[Outputs]
  csv=true
  exodus = true
[]

test/tests/time_steppers/calc_const_dt/calc_const_dt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  num_steps = 10
  end_time = 2

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/pps_interval/pps_bad_interval2.i

[Mesh]
  file = square-2x2-nodeids.e
  # This test can only be run with renumering disabled, so the
  # NodalVariableValue postprocessor's node id is well-defined.
  allow_renumbering = false
[]

[Variables]
  active = 'u v'

  [./u]
    order = SECOND
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Functions]
  active = 'force_fn exact_fn left_bc'

  [./force_fn]
    type = ParsedFunction
    value = '1-x*x+2*t'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = '(1-x*x)*t'
  [../]

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = '
    time_u diff_u ffn_u
    time_v diff_v'

  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'all_u left_v right_v'

  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = exact_fn
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '2'
    value = 0
  [../]
[]

[Postprocessors]
  active = 'l2 node1 node4'

  [./l2]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./node1]
    type = NodalVariableValue
    variable = u
    nodeid = 15
  [../]

  [./node4]
    type = NodalVariableValue
    variable = v
    nodeid = 10
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 1
[]

[Outputs]
  file_base = ignore_bad
  exodus = true
  [./console]
    type = Console
    interval = 2
  [../]
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform_hard_cubic.i

# apply uniform stretches in x, y and z directions.
# let cohesion = 10, cohesion_residual = 2, cohesion_limit = 0.0003
# With cohesion = C, friction_angle = 60deg, tip_smoother = 4, the
# algorithm should return to
# sigma_m = (C*Cos(60) - 4)/Sin(60)
# This allows checking of the relationship for C

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningCubic
    value_0 = 10
    value_residual = 2
    internal_limit = 0.0003
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
    debug_jac_at_stress = '10 1 2 1 10 3 2 3 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1E-4
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-8
  [../]
[]


[Executioner]
  end_time = 10
  dt = 0.25
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard_cubic
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/glued_contact/sm/glued_contact_mechanical_constraint_test_sm.i

# This is a mechanical constraint (contact formulation) version of glued_contact_mechanical_constraint.i
[Mesh]
  file = glued_contact_test.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.5001'
  [../]

  [./lateral]
    type = PiecewiseLinear
    x = '0 1 2 3'
    y = '0 0 1 0'
    scale_factor = 0.5
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = glued
    formulation = kinematic
    system = constraint
  [../]
[]

[BCs]
  [./bottom_lateral]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = lateral
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = up
  [../]

  [./bottom_out]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'ilu      101'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-8
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 10
  dt = 0.1
  num_steps = 30

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Postprocessors]
  active = ''
  [./resid]
    type = Residual
  [../]
  [./iters]
    type = NumNonlinearIterations
  [../]
[]

[Outputs]
  file_base = mechanical_constraint_out
  exodus = true
[]

modules/richards/test/tests/jacobian_2/jn_fu_01.i

# two phase
# unsaturated = true

# gravity = false
# supg = false
# transient = false

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
  [./non_Richards]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardsfgas non_Richards_should_have_0_off_diag'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
  [./non_Richards_should_have_0_off_diag]
    type = BodyForce
    variable = non_Richards
    function = 0
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn01
  exodus = false
[]

modules/tensor_mechanics/test/tests/jacobian/cdp_cwp_coss01.i

#Cosserat capped weak plane and capped drucker prager
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 0.4
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    yield_function_tolerance = 1E-11     # irrelevant here
    internal_constraint_tolerance = 1E-9 # irrelevant here
  [../]

  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 2.055555555556E-01
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 10.0
    poisson = 0.25
    layer_thickness = 10.0
    joint_normal_stiffness = 2.5
    joint_shear_stiffness = 2.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '10 0 0  0 10 0  0 0 10'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = 'dp wp'
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
  [../]
  [./dp]
    type = CappedDruckerPragerCosseratStressUpdate
    host_youngs_modulus = 10.0
    host_poissons_ratio = 0.25
    base_name = dp
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-11
    tip_smoother = 1
    smoothing_tol = 1
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    base_name = wp
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0.1
    smoothing_tol = 0.1
    yield_function_tol = 1E-11
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  end_time = 1
  dt = 1
  type = Transient
[]

modules/combined/test/tests/DiffuseCreep/variable_base_eigen_strain.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 2
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);0.1+0.01*v'
    [../]
  [../]
  [./mu]
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./gb]
    family = LAGRANGE
    order  = FIRST
  [../]
  [./eigen_strain_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./eigen_strain_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./stress_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
[]

[Kernels]
  [./conc]
    type = CHSplitConcentration
    variable = c
    mobility = mobility_prop
    chemical_potential_var = mu
  [../]
  [./chempot]
    type = CHSplitChemicalPotential
    variable = mu
    chemical_potential_prop = mu_prop
    c = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
  [../]
[]

[AuxKernels]
  [./gb]
    type = FunctionAux
    variable = gb
    function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);v'
  [../]
  [./eigenstrain_xx]
    type = RankTwoAux
    variable = eigen_strain_xx
    rank_two_tensor = eigenstrain
    index_i = 0
    index_j = 0
  [../]
  [./eigenstrain_yy]
    type = RankTwoAux
    variable = eigen_strain_yy
    rank_two_tensor = eigenstrain
    index_i = 1
    index_j = 1
  [../]
  [./stress_xx]
    type = RankTwoAux
    variable = stress_xx
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
  [../]
[]

[Materials]
  [./chemical_potential]
    type = DerivativeParsedMaterial
    block = 0
    f_name = mu_prop
    args = c
    function = 'c'
    derivative_order = 1
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    function = 'c*(1.0-c)'
    args = c
    f_name = var_dep
    derivative_order = 1
  [../]
  [./mobility]
    type = CompositeMobilityTensor
    block = 0
    M_name = mobility_prop
    tensors = diffusivity
    weights = var_dep
    args = c
  [../]
  [./phase_normal]
    type = PhaseNormalTensor
    phase = gb
    normal_tensor_name = gb_normal
  [../]
  [./aniso_tensor]
    type = GBDependentAnisotropicTensor
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = aniso_tensor
  [../]
  [./diffusivity]
    type = GBDependentDiffusivity
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = diffusivity
  [../]
  [./eigenstrain_prefactor]
    type = DerivativeParsedMaterial
    block = 0
    function = 'c-0.1'
    args = c
    f_name = eigenstrain_prefactor
    derivative_order = 1
  [../]
  [./eigenstrain]
    type = ComputeVariableBaseEigenStrain
    base_tensor_property_name = aniso_tensor
    prefactor = eigenstrain_prefactor
    eigenstrain_name = eigenstrain
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y'
    eigenstrain_names = eigenstrain
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
  [../]
[]

[BCs]
  [./Periodic]
    [./cbc]
      auto_direction = 'x y'
      variable = c
    [../]
  [../]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_rel_tol = 1e-10
  nl_max_its = 5

  l_tol = 1e-4
  l_max_its = 20

  dt = 1
  num_steps = 5
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/actions/basicthm_h.i

# PorousFlowBasicTHM action with coupling_type = HydroGenerator
# (no thermal or mechanical effects)

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 3
    xmax = 10
    ymax = 3
  []
  [./aquifer]
    input = gen
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 1 0'
    top_right = '10 2 0'
  [../]
  [./injection_area]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = 'injection_area'
    normal = '-1 0 0'
    input = 'aquifer'
  [../]
  [./outflow_area]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = 'outflow_area'
    normal = '1 0 0'
    input = 'injection_area'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caprock aquifer'
    input = 'outflow_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
    initial_condition = 1e6
  [../]
[]

[AuxVariables]
  [./temperature]
    initial_condition = 293
  [../]
[]

[PorousFlowBasicTHM]
  porepressure = porepressure
  temperature = temperature
  coupling_type = Hydro
  gravity = '0 0 0'
  fp = simple_fluid
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1.5e6
    boundary = injection_area
  [../]
  [./constant_outflow_porepressure]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = outflow_area
    pt_vals = '0 1e9'
    multipliers = '0 1e9'
    flux_function = 1e-6
    PT_shift = 1e6
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.8
    solid_bulk_compliance = 2e-7
    fluid_bulk_modulus = 1e7
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1e-13 0 0   0 1e-13 0   0 0 1e-13'
  [../]
  [./permeability_caprock]
    type = PorousFlowPermeabilityConst
    block = caprock
    permeability = '1e-15 0 0   0 1e-15 0   0 0 1e-15'
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1e4
  dt = 1e3
  nl_abs_tol = 1e-15
  nl_rel_tol = 1E-14
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/j_integral_vtest/j_int_surfbreak_ellip_crack_sym_mm_cfp_cm.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = ellip_crack_4sym_norad_mm.e
  displacements = 'disp_x disp_y disp_z'
  partitioner = centroid
  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./resid_z]
  [../]
[]


[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.1'
    scale_factor = -689.5 #MPa
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  crack_direction_method = CrackMouth
  crack_mouth_boundary = 11
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0.0 1.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  crack_front_points = '0             254           0
                        127.308       248.843       0
                        249.446       233.581       0
                        361.455       208.835       0
                        508.003       152.398       0
                        602.415       80.3208       0
                        635           0             0'
  radius_inner = '12.5 25.0 37.5'
  radius_outer = '25.0 37.5 50.0'
  intersecting_boundary = '1 2'
  symmetry_plane = 2
  position_type = angle
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
    save_in_disp_z = resid_z
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 12
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 5
      function = rampConstantUp
    [../]
  [../]
[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 206.8e+3 #MPa
    #youngs_modulus = 30e+6
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


#  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   nl_rel_tol = 1e-11
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]

  [./nl_its]
    type = NumNonlinearIterations
  [../]

  [./lin_its]
    type = NumLinearIterations
  [../]

  [./react_z]
    type = NodalSum
    variable = resid_z
    boundary = 5
  [../]

[]


[Outputs]
  execute_on = 'timestep_end'
  file_base = j_int_surfbreak_ellip_crack_sym_mm_cfp_cm_out
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/rigidbodymotion/update_orientation_verify.i

# test file for applyting advection term and observing rigid body motion of grains
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 14
  ny = 7
  nz = 7
  xmax = 40
  ymax = 25
  zmax = 25
  elem_type = HEX8
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    args = eta
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = eta
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
  [./eta_dot]
    type = TimeDerivative
    variable = eta
  [../]
  [./vadv_eta]
    type = SingleGrainRigidBodyMotion
    variable = eta
    c = c
    v = eta
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
  [./acint_eta]
    type = ACInterface
    variable = eta
    mob_name = M
    args = c
    kappa_name = kappa_eta
  [../]
  [./acbulk_eta]
    type = AllenCahn
    variable = eta
    mob_name = M
    f_name = F
    args = c
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '5.0  2.0      0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    args = 'c eta'
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+(c-eta)^2
    derivative_order = 2
  [../]
[]

[AuxVariables]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./centroids]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vadv_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vadv_y]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./angle_initial]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./euler_angle]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_center
    field_display = UNIQUE_REGION
    execute_on = timestep_begin
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_center
    field_display = VARIABLE_COLORING
    execute_on = timestep_begin
  [../]
  [./centroids]
    type = FeatureFloodCountAux
    variable = centroids
    execute_on = timestep_begin
    field_display = CENTROID
    flood_counter = grain_center
  [../]
  [./vadv_x]
    type = GrainAdvectionAux
    grain_force = grain_force
    grain_volumes = grain_volumes
    grain_tracker_object = grain_center
    execute_on = timestep_begin
    component = x
    variable = vadv_x
  [../]
  [./vadv_y]
    type = GrainAdvectionAux
    grain_force = grain_force
    grain_volumes = grain_volumes
    grain_tracker_object = grain_center
    execute_on = timestep_begin
    component = y
    variable = vadv_y
  [../]
  [./angle_initial]
    type = OutputEulerAngles
    variable = angle_initial
    euler_angle_provider = euler_angle_initial
    grain_tracker = grain_center
    output_euler_angle = phi2
    execute_on = timestep_begin
  [../]
  [./angle]
    type = OutputEulerAngles
    variable = euler_angle
    euler_angle_provider = euler_angle
    grain_tracker = grain_center
    output_euler_angle = phi2
    execute_on = timestep_begin
  [../]
[]

[VectorPostprocessors]
  [./forces]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
  [./angle_check]
    type = EulerAngleUpdaterCheck
    grain_tracker_object = grain_center
    euler_angle_updater = euler_angle
    grain_torques_object = grain_force
    grain_volumes = grain_volumes
    execute_on = timestep_begin
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    variable = eta
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force]
    type = ConstantGrainForceAndTorque
    execute_on = 'initial timestep_begin linear nonlinear'
    force = '0.5 0.0 0.0 '
    torque = '-200.0 -120.0 1000.0'
  [../]
  [./euler_angle_initial]
    type = RandomEulerAngleProvider
    grain_tracker_object = grain_center
    seed = 12356
    execute_on = 'initial timestep_begin'
  [../]
  [./euler_angle]
    type = EulerAngleUpdater
    grain_tracker_object = grain_center
    euler_angle_provider = euler_angle_initial
    grain_torques_object = grain_force
    grain_volumes = grain_volumes
    execute_on = timestep_begin
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  nl_max_its = 30
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  dt = 0.2
  num_steps = 2
[]

[Outputs]
  csv = true
  exodus = true
[]

[ICs]
  [./rect_c]
    y2 = 20.0
    y1 = 5.0
    z1 = 5.0
    z2 = 20.0
    inside = 1.0
    x2 = 30.0
    variable = c
    x1 = 10.0
    type = BoundingBoxIC
  [../]
  [./rect_eta]
    y2 = 20.0
    y1 = 5.0
    inside = 1.0
    x2 = 30.0
    variable = eta
    x1 = 10.0
    z1 = 5.0
    z2 = 20.0
    type = BoundingBoxIC
  [../]
[]

modules/richards/test/tests/dirac/q2p01.i

# unsaturated
# production
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1 1E1 1E2 1E3'
    x = '0 1E-1 1 1E1 1E2 1E3'
  [../]
[]


[UserObjects]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 0.5
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.3
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = Q2PRelPermPowerGas
    simm = 0.1
    n = 3
  [../]

  [./borehole_total_outflow_water]
    type = RichardsSumQuantity
  [../]
  [./borehole_total_outflow_gas]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  [./pp]
  [../]
  [./sat]
  [../]
[]

[ICs]
  [./p_ic]
    type = ConstantIC
    variable = pp
    value = 1
  [../]
  [./s_ic]
    type = ConstantIC
    variable = sat
    value = 0.5
  [../]
[]


[Q2P]
  porepressure = pp
  saturation = sat
  water_density = DensityWater
  water_relperm = RelPermWater
  water_viscosity = 0.8
  gas_density = DensityGas
  gas_relperm = RelPermGas
  gas_viscosity = 0.5
  diffusivity = 0.0
  output_total_masses_to = 'CSV'
[]

[DiracKernels]
  [./bh_water]
    type = Q2PBorehole
    bottom_pressure = 0
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_water
    variable = sat
    unit_weight = '0 0 0'
    character = 8E9
    fluid_density = DensityWater
    fluid_relperm = RelPermWater
    other_var = pp
    var_is_porepressure = false
    fluid_viscosity = 0.8
  [../]
  [./bh_gas]
    type = Q2PBorehole
    bottom_pressure = 0
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_gas
    variable = pp
    unit_weight = '0 0 0'
    character = 1E10
    fluid_density = DensityGas
    fluid_relperm = RelPermGas
    other_var = sat
    var_is_porepressure = true
    fluid_viscosity = 0.5
  [../]
[]



[Postprocessors]
  [./bh_report_water]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_water
  [../]
  [./bh_report_gas]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_gas
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '1 1 1'
    execute_on = timestep_end
  [../]
  [./sat0]
    type = PointValue
    variable = sat
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]




[Materials]
  [./rock]
    type = Q2PMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-12 0 0  0 1E-12 0  0 0 1E-12'
    gravity = '0 0 0'
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1E3
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  file_base = q2p01
  execute_on = timestep_end
  [./CSV]
    type = CSV
  [../]
[]

modules/phase_field/test/tests/mobility_derivative/mobility_derivative_split_coupled_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  xmax = 30.0
  ymax = 30.0
  elem_type = QUAD4
[]

[Variables]
  [./c]
  [../]
  [./w]
  [../]
  [./d]
  [../]
[]

[ICs]
  [./c_IC]
    type = CrossIC
    x1 = 0.0
    x2 = 30.0
    y1 = 0.0
    y2 = 30.0
    variable = c
  [../]
  [./d_IC]
    type = BoundingBoxIC
    x1 = 0.0
    x2 = 15.0
    y1 = 0.0
    y2 = 30.0
    inside = 1.0
    outside = 0.0
    variable = d
  [../]
[]

[Kernels]
  [./cres]
    type = SplitCHParsed
    variable = c
    kappa_name = kappa_c
    w = w
    f_name = F
  [../]
  [./wres]
    type = SplitCHWRes
    variable = w
    mob_name = M
    args = 'c d'
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./d_dot]
    type = TimeDerivative
    variable = d
  [../]
  [./d_diff]
    type = MatDiffusion
    variable = d
    diffusivity = diffusivity
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./kappa]
    type = GenericConstantMaterial
    prop_names = 'kappa_c'
    prop_values = '2.0'
  [../]
  [./mob]
    type = DerivativeParsedMaterial
    f_name = M
    args = 'c d'
    function = 'if(d>0.001,d,0.001)*(1-0.5*c^2)'
    outputs = exodus
    derivative_order = 1
  [../]
  [./free_energy]
    type = MathEBFreeEnergy
    f_name = F
    c = c
  [../]
  [./d_diff]
    type = GenericConstantMaterial
    prop_names = diffusivity
    prop_values = 0.1
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31      lu      1'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 50
  nl_rel_tol = 1.0e-10

  dt = 10.0
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/phase_field/examples/rigidbodymotion/AC_CH_advection_constforce_rect.i

#
# Tests the Rigid Body Motion of grains due to applied forces.
# Concenterated forces and torques have been applied and corresponding
# advection velocities are calculated.
# Grain motion kernels make the grains translate and rotate as a rigidbody,
# applicable to grain movement in porous media
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 25
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vadvx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vadvy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    args = eta
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    # advection kernel corrsponding to CH equation
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = eta
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
  [./eta_dot]
    type = TimeDerivative
    variable = eta
  [../]
  [./vadv_eta]
    # advection kernel corrsponding to AC equation
    type = SingleGrainRigidBodyMotion
    variable = eta
    c = c
    v = eta
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
  [./acint_eta]
    type = ACInterface
    variable = eta
    mob_name = M
    args = c
    kappa_name = kappa_eta
  [../]
  [./acbulk_eta]
    type = AllenCahn
    variable = eta
    mob_name = M
    f_name = F
    args = c
  [../]
[]

[AuxKernels]
  [./vadv_x]
    type = GrainAdvectionAux
    component = x
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
    variable = vadvx
  [../]
  [./vadv_y]
    type = GrainAdvectionAux
    component = y
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
    variable = vadvy
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '1.0  2.0      0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    args = 'c eta'
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+(c-eta)^2
    derivative_order = 2
  [../]
[]

[VectorPostprocessors]
  [./forces]
    # VectorPostprocessor for outputting grain forces and torques
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    variable = eta
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force]
    type = ConstantGrainForceAndTorque
    execute_on = 'linear nonlinear'
    force = '0.2 0.0 0.0 ' # size should be 3 * no. of grains
    torque = '0.0 0.0 5.0 ' # size should be 3 * no. of grains
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  nl_max_its = 30
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  dt = 0.1
  end_time = 10
[]

[Outputs]
  exodus = true
[]

[ICs]
  [./rect_c]
    y2 = 20.0
    y1 = 5.0
    inside = 1.0
    x2 = 30.0
    variable = c
    x1 = 10.0
    type = BoundingBoxIC
  [../]
  [./rect_eta]
    y2 = 20.0
    y1 = 5.0
    inside = 1.0
    x2 = 30.0
    variable = eta
    x1 = 10.0
    type = BoundingBoxIC
  [../]
[]

modules/porous_flow/test/tests/jacobian/fflux02.i

# 1phase, 3components, constant viscosity, constant insitu permeability
# density with constant bulk, Corey relative perm, nonzero gravity, unsaturated with vanGenuchten
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
  [./massfrac1]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = -0.7+x+y
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 0.3
  [../]
  [./massfrac1]
    type = RandomIC
    variable = massfrac1
    min = 0
    max = 0.4
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
    gravity = '-1 -0.1 0'
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = massfrac0
    gravity = '-1 -0.1 0'
  [../]
  [./flux2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 2
    variable = massfrac1
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0 massfrac1'
    number_fluid_phases = 1
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0 massfrac1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/misc/check_error/nodal_bc_on_elemental_var.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
 []

[Variables]
  [u]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [bcs]
    type = DirichletBC
    variable = u
    boundary = 'left right'
    value = 1
  []
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 1
  abort_on_solve_fail = true
[]

modules/navier_stokes/test/tests/ins/lid_driven/lid_driven_chorin.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 1.0
    ymin = 0
    ymax = 1.0
    nx = 40
    ny = 40
    elem_type = QUAD4
  []
  [./corner_node]
    type = ExtraNodesetGenerator
    new_boundary = 99
    nodes = '0'
    input = gen
  [../]
[]

[Variables]
  # x-velocity
  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0.0
    [../]
  [../]

  # y-velocity
  [./v]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0.0
    [../]
  [../]

  # x-star velocity
  [./u_star]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0.0
    [../]
  [../]

  # y-star velocity
  [./v_star]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0.0
    [../]
  [../]

  # Pressure
  [./p]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]



[Kernels]
  [./x_chorin_predictor]
    type = INSChorinPredictor
    variable = u_star
    u = u
    v = v
    u_star = u_star
    v_star = v_star
    component = 0
    predictor_type = 'new'
  [../]

  [./y_chorin_predictor]
    type = INSChorinPredictor
    variable = v_star
    u = u
    v = v
    u_star = u_star
    v_star = v_star
    component = 1
    predictor_type = 'new'
  [../]

  [./x_chorin_corrector]
    type = INSChorinCorrector
    variable = u
    u_star = u_star
    v_star = v_star
    p = p
    component = 0
  [../]

  [./y_chorin_corrector]
    type = INSChorinCorrector
    variable = v
    u_star = u_star
    v_star = v_star
    p = p
    component = 1
  [../]

  [./chorin_pressure_poisson]
    type = INSChorinPressurePoisson
    variable = p
    u_star = u_star
    v_star = v_star
  [../]
[]

[BCs]
  [./u_no_slip]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 'bottom right left'
    value = 0.0
  [../]

  [./u_lid]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 'top'
    value = 100.0
  [../]

  [./v_no_slip]
    type = DirichletBC
    variable = v
    preset = false
    boundary = 'bottom right top left'
    value = 0.0
  [../]

  # Make u_star satsify all the same variables as the real velocity.
  [./u_star_no_slip]
    type = DirichletBC
    variable = u_star
    preset = false
    boundary = 'bottom right left'
    value = 0.0
  [../]

  [./u_star_lid]
    type = DirichletBC
    variable = u_star
    preset = false
    boundary = 'top'
    value = 100.0
  [../]

  [./v_star_no_slip]
    type = DirichletBC
    variable = v_star
    preset = false
    boundary = 'bottom right top left'
    value = 0.0
  [../]

  # With solid walls everywhere, we specify dp/dn=0, i.e the
  # "natural BC" for pressure.  Technically the problem still
  # solves without pinning the pressure somewhere, but the pressure
  # bounces around a lot during the solve, possibly because of
  # the addition of arbitrary constants.
  [./pressure_pin]
    type = DirichletBC
    variable = p
    preset = false
    boundary = '99'
    value = 0
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 0
    # rho = 1000    # kg/m^3
    # mu = 0.798e-3 # Pa-s at 30C
    # cp = 4.179e3  # J/kg-K at 30C
    # k = 0.58      # W/m-K at ?C

    # Dummy parameters
    prop_names = 'rho mu cp k'
    prop_values = '1  1  1  1'
  [../]
[]

[Preconditioning]
#active = 'FDP_Newton'
#active = 'SMP_PJFNK'
active = 'SMP_Newton'

[./FDP_Newton]
type = FDP
full = true

solve_type = 'NEWTON'

#petsc_options_iname = '-mat_fd_coloring_err'
#petsc_options_value = '1.e-10'
[../]

# For some reason, nonlinear convergence with JFNK is poor, but it
# seems to be OK for SMP_Newton.  This may indicate a a scaling issue
# in the JFNK case....
[./SMP_PJFNK]
  type = SMP
  full = true

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


[../]

[./SMP_Newton]
  type = SMP
  full = true

  solve_type = 'NEWTON'

[../]
[]


[Executioner]
  type = Transient
  # Note: the explicit case with lid velocity = 100 and a 40x40 was unstable
  # for dt=1.e-4, even though the restriction should be dt < dx/|u| = 1/4000 = 2.5e-4
  #
  dt = 1.e-3
  dtmin = 1.e-6
  petsc_options_iname = '-ksp_gmres_restart '
  petsc_options_value = '300                '

  line_search = 'none'

  nl_rel_tol = 1e-5
  nl_max_its = 6
  l_tol = 1e-6
  l_max_its = 300
  start_time = 0.0
  num_steps = 5
[]




[Outputs]
  file_base = lid_driven_chorin_out
  exodus = true
[]

test/tests/indicators/laplacian_jump_indicator/biharmonic_transient.i

[GlobalParams]
  # Parameters used by Functions.
  vars   = 'c'
  vals   = '50'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -.5
  xmax = .5
  ymin = -.5
  ymax = .5
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
    order = THIRD
    family = HERMITE
  [../]
[]

[Kernels]
  [./biharmonic]
    type = Biharmonic
    variable = u
  [../]
  [./body_force]
    type = BodyForce
    variable = u
    function = forcing_func
  [../]
[]

[BCs]
  [./all_value]
    type = FunctionPenaltyDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = u_func
    penalty = 1e10
  [../]
  [./all_flux]
    type = FunctionPenaltyFluxBC
    variable = u
    boundary = 'left right top bottom'
    function = u_func
    penalty = 1e10
  [../]
[]

[Adaptivity]
  [./Indicators]
    [./error]
      type = LaplacianJumpIndicator
      variable = u
      scale_by_flux_faces = true
    [../]
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1

  # Note: the unusually tight tolerances here are due to the penalty
  # BCs (currently the only way of accurately Dirichlet boundary
  # conditions on Hermite elements in MOOSE).
  nl_rel_tol = 1.e-15
  l_tol = 1.e-15

  # We have exact Jacobians
  solve_type = 'NEWTON'

  # Use 6x6 quadrature to ensure the forcing function is integrated
  # accurately.
  [./Quadrature]
    type = GAUSS
    order = ELEVENTH
  [../]
[]

[Functions]
  [./u_func]
    type   = ParsedGradFunction
    value  = 'exp(-c*(x^2+y^2))*exp(-t)'
    grad_x = '-2*c*exp(-c*(x^2+y^2))*x*exp(-t)'
    grad_y = '-2*c*exp(-c*(x^2+y^2))*y*exp(-t)'
  [../]
  [./forcing_func]
    type   = ParsedFunction
    value  = '16*c^2*(c^2*(x^2+y^2)^2 - 4*c*(x^2+y^2) + 2)*exp(-c*(x^2+y^2))*exp(-t)'
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = u_func
    variable = u
  [../]
[]

[Postprocessors]
  [./l2_error]
    type = ElementL2Error
    variable = u
    function = u_func
  [../]
  [./h1_error]
    type = ElementH1Error
    variable = u
    function = u_func
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/picard/picard.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    start_time = 1
    end_time = 1.5
  [../]
[]

modules/level_set/examples/rotating_circle/circle_rotate_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 32
  ny = 32
  uniform_refine = 2
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./vel_y]
  [../]
[]

[AuxKernels]
  [./vel_x]
    type = FunctionAux
    function = 4*y
    variable = vel_x
    execute_on = initial
  [../]
  [./vel_y]
    type = FunctionAux
    function = -4*x
    variable = vel_y
    execute_on = initial
  [../]
[]

[Variables]
  [./phi]
  [../]
[]

[BCs]
  [./all]
    type = DirichletBC
    variable = phi
    boundary = 'top bottom left right'
    value = 0
  [../]
[]

[Functions]
  [./phi_exact]
    type = LevelSetOlssonBubble
    epsilon = 0.03
    center = '0 0.5 0'
    radius = 0.15
  [../]
[]

[ICs]
  [./phi_ic]
    type = FunctionIC
    function = phi_exact
    variable = phi
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = phi
  [../]

  [./advection]
    type = LevelSetAdvection
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  [../]
[]

[Postprocessors]
  [./area]
    type = LevelSetVolume
    threshold = 0.5
    variable = phi
    location = outside
    execute_on = 'initial timestep_end'
  [../]
  [./cfl]
    type = LevelSetCFLCondition
    velocity_x = vel_x
    velocity_y = vel_y
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  start_time = 0
  end_time = 1.570796
  scheme = crank-nicolson
  petsc_options_iname = '-pc_type -pc_sub_type'
  petsc_options_value = 'asm      ilu'
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = cfl
    scale = 0.8
  [../]
[]

[MultiApps]
  [./reinit]
    type = LevelSetReinitializationMultiApp
    input_files = 'circle_rotate_sub.i'
    execute_on = 'timestep_end'
  [../]
[]

[Transfers]
  [./to_sub]
    type = MultiAppCopyTransfer
    source_variable = phi
    variable = phi
    direction = to_multiapp
    multi_app = reinit
    execute_on = 'timestep_end'
  [../]
  [./to_sub_init]
    type = MultiAppCopyTransfer
    source_variable = phi
    variable = phi_0
    direction = to_multiapp
    multi_app = reinit
    execute_on = 'timestep_end'
  [../]
  [./from_sub]
    type = MultiAppCopyTransfer
    source_variable = phi
    variable = phi
    direction = from_multiapp
    multi_app = reinit
    execute_on = 'timestep_end'
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/phase_field/examples/cahn-hilliard/Math_CH.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 100
  xmax = 60
  ymax = 60
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
    [./InitialCondition]
      type = RandomIC
      min = -0.1
      max =  0.1
    [../]
  [../]
[]

[Kernels]
  [./c_dot]
    type = TimeDerivative
    variable = c
  [../]
  [./CHbulk]
    type = CHMath
    variable = c
  [../]
  [./CHint]
    type = CHInterface
    variable = c
    mob_name = M
    kappa_name = kappa_c
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./mat]
    type = GenericConstantMaterial
    prop_names  = 'M   kappa_c'
    prop_values = '1.0 0.5'
  [../]
[]

[Postprocessors]
  [./top]
    type = SideIntegralVariablePostprocessor
    variable = c
    boundary = top
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  scheme = bdf2

  # Preconditioning using the additive Schwartz method and LU decomposition
  petsc_options_iname = '-pc_type -sub_ksp_type -sub_pc_type'
  petsc_options_value = 'asm      preonly       lu          '

  # Alternative preconditioning options using Hypre (algebraic multi-grid)
  #petsc_options_iname = '-pc_type -pc_hypre_type'
  #petsc_options_value = 'hypre    boomeramg'

  l_tol = 1e-4
  l_max_its = 30

  dt = 2.0
  end_time = 80.0
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/solid_mechanics/test/tests/j_integral_vtest/j_int_surfbreak_ellip_crack_sym_mm_cfp.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = ellip_crack_4sym_norad_mm.e
  displacements = 'disp_x disp_y disp_z'
  partitioner = centroid
  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./resid_z]
  [../]
[]


[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.1'
    scale_factor = -689.5 #MPa
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  crack_direction_method = CurvedCrackFront
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0.0 1.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  crack_front_points = '0             254           0
                        127.308       248.843       0
                        249.446       233.581       0
                        361.455       208.835       0
                        508.003       152.398       0
                        602.415       80.3208       0
                        635           0             0'
  radius_inner = '12.5 25.0 37.5'
  radius_outer = '25.0 37.5 50.0'
  intersecting_boundary = '1 2'
  symmetry_plane = 2
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
    save_in_disp_z = resid_z
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 12
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 5
      function = rampConstantUp
    [../]
  [../]
[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 206.8e+3 #MPa
    #youngs_modulus = 30e+6
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


#  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   nl_rel_tol = 1e-11
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]

  [./nl_its]
    type = NumNonlinearIterations
  [../]

  [./lin_its]
    type = NumLinearIterations
  [../]

  [./react_z]
    type = NodalSum
    variable = resid_z
    boundary = 5
  [../]

[]


[Outputs]
  execute_on = 'timestep_end'
  file_base = j_int_surfbreak_ellip_crack_sym_mm_cfp_out
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/isotropicSD_plasticity/powerRuleHardening.i

# UserObject IsotropicSD test, with power rule hardening with rate 1e2.
# Linear strain is applied in the x and y direction.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin =  -.5
  xmax = .5
  ymin = -.5
  ymax = .5
  zmin = -.5
  zmax = .5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./xdisp]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'right'
    function = '0.005*t'
  [../]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'top'
    function = '0.005*t'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    #boundary = 'bottom top'
    boundary = 'bottom'
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./zfix]
    type = DirichletBC
    variable = disp_z
    #boundary = 'front back'
    boundary = 'back'
    value = 0
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sdev]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sdet]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./plastic_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xx
    index_i = 0
    index_j = 0
  [../]
  [./plastic_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xy
    index_i = 0
    index_j = 1
  [../]
  [./plastic_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xz
    index_i = 0
    index_j = 2
  [../]
  [./plastic_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_yy
    index_i = 1
    index_j = 1
  [../]
  [./plastic_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_yz
    index_i = 1
    index_j = 2
  [../]
  [./plastic_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = intnl
  [../]
  [./sdev]
    type = RankTwoScalarAux
    variable = sdev
    rank_two_tensor = stress
    scalar_type = VonMisesStress
  [../]
[]

[Postprocessors]
  [./sdev]
    type = PointValue
    point = '0 0 0'
    variable = sdev
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./p_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./p_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xy
  [../]
  [./p_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xz
  [../]
  [./p_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_yz
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./p_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./p_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_zz
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningPowerRule
    value_0 = 300
    epsilon0 = 1
    exponent = 1e2

  [../]
  [./IsotropicSD]
    type = TensorMechanicsPlasticIsotropicSD
    b = -0.2
    c = -0.779422863
    associative = true
    yield_strength = str
    yield_function_tolerance = 1e-5
    internal_constraint_tolerance = 1e-9
    use_custom_returnMap = false
    use_custom_cto = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '121e3 80e3'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1e-9
    plastic_models = IsotropicSD
    debug_fspb = crash
    tangent_operator = elastic
  [../]
[]


[Executioner]
  num_steps = 3
  dt = .5
  type = Transient

  nl_rel_tol = 1e-6
  nl_max_its = 10
  l_tol = 1e-4
  l_max_its = 50

  solve_type = PJFNK
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
[]


[Outputs]
  perf_graph = false
  csv = true
[]

[Preconditioning]
 [./smp]
   type = SMP
   full = true
 [../]
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/small_deform4.i

# apply a pure tension, then some shear
# the BCs are designed to map out the yield function, showing
# the affect of 'cap' smoothing
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = x_disp
    boundary = front
    function = 'if(t<1E-6,0,3*(t-1E-6)*(t-1E-6)*1E6)'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = y_disp
    boundary = front
    function = 'if(t<1E-6,0,5*(t-1E-6)*(t-1E-6)*1E6)'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = front
    function = 'if(t<1E-6,t,1E-6)'
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]

[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E3
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.08748866
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tip_scheme = cap
    smoother = 0
    cap_rate = 0.001
    cap_start = -1000.0
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 0.5E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-4
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    debug_fspb = crash
    debug_jac_at_stress = '1E4 2E4 3E4 2E4 -4E4 5E4 3E4 5E4 6E8'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-3
    debug_pm_change = 1E-5
    debug_intnl_change = 1E-5
  [../]
[]


[Executioner]
  end_time = 2E-6
  dt = 1E-7
  type = Transient
[]


[Outputs]
  file_base = small_deform4
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/truss/truss_3d_action.i

[Mesh]
  type = FileMesh
  file = truss_3d.e
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
 [./axial_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_over_l]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./area]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./react_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./x2]
    type = PiecewiseLinear
    x = '0  1 2 3'
    y = '0 .5 1 1'
  [../]
  [./y2]
    type = PiecewiseLinear
    x = '0 1  2 3'
    y = '0 0 .5 1'
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0.0
  [../]
  [./fixx2]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    function = x2
  [../]
  [./fixx3]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 3
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]
  [./fixy2]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = y2
  [../]
  [./fixy3]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 3
    value = 0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]
  [./fixz2]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
  [./fixz3]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 3
    value = 0
  [../]
[]

[AuxKernels]
  [./axial_stress]
    type = MaterialRealAux
    block = '1 2'
    property = axial_stress
    variable = axial_stress
  [../]
  [./e_over_l]
    type = MaterialRealAux
    block = '1 2'
    property = e_over_l
    variable = e_over_l
  [../]
  [./area]
    type = ConstantAux
    block = '1 2'
    variable = area
    value = 1.0
    execute_on = 'initial timestep_begin'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'jacobi   101'
  line_search = 'none'

  nl_max_its = 15
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-10

  dt = 1
  num_steps = 3
  end_time = 3
[]

[Modules/TensorMechanics/LineElementMaster]
  [./block]
    truss = true
    add_variables = true
    displacements = 'disp_x disp_y disp_z'

    area = area

    block = '1 2'

    save_in = 'react_x react_y react_z'
  [../]
[]

[Materials]
  [./linelast]
    type = LinearElasticTruss
    block = '1 2'
    youngs_modulus = 1e6
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Outputs]
  file_base = 'truss_3d_out'
  exodus = true
[]

test/tests/time_integrators/scalar/scalar.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 1
  ny = 1
  elem_type = QUAD4
[]

[Variables]
  [./n]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
[]

[ScalarKernels]
  [./dn]
    type = ODETimeDerivative
    variable = n
  [../]
  [./ode1]
    type = ParsedODEKernel
    function = '-n'
    variable = n
    # implicit = false
  [../]
[]

[Executioner]
  type = Transient
  [./TimeIntegrator]
    # type = ImplicitEuler
    # type = BDF2
    type = CrankNicolson
    # type = ImplicitMidpoint
    # type = LStableDirk2
    # type = LStableDirk3
    # type = LStableDirk4
    # type = AStableDirk4
    #
    # Explicit methods
    # type = ExplicitEuler
    # type = ExplicitMidpoint
    # type = Heun
    # type = Ralston
  [../]
  start_time = 0
  end_time = 1
  dt = 0.001
  dtmin = 0.001 # Don't allow timestep cutting
  solve_type = 'PJFNK'
  nl_max_its = 2
  nl_abs_tol = 1.e-12 # This is an ODE, so nl_abs_tol makes sense.
[]

[Functions]
  [./exact_solution]
    type = ParsedFunction
    value = exp(t)
  [../]
[]

[Postprocessors]
  [./error_n]
    # Post processor that computes the difference between the computed
    # and exact solutions.  For the exact solution used here, the
    # error at the final time should converge at O(dt^p), where p is
    # the order of the method.
    type = ScalarL2Error
    variable = n
    function = exact_solution
    # final is not currently supported for Postprocessor execute_on...
    # execute_on = 'final'
  [../]
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/capped_drucker_prager/random.i

# capped drucker-prager
# apply many random large deformations, checking that the algorithm returns correctly to
# the yield surface each time.


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
  [../]
[]

[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./shear_yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tensile_yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./compressive_yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./shear_yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = shear_yield_fcn
  [../]
  [./tensile_fcn_auxk]
    type = MaterialStdVectorAux
    index = 1
    property = plastic_yield_function
    variable = tensile_yield_fcn
  [../]
  [./compressive_yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 2
    property = plastic_yield_function
    variable = compressive_yield_fcn
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./shear_max]
    type = ElementExtremeValue
    variable = shear_yield_fcn
    outputs = 'console'
  [../]
  [./tensile_max]
    type = ElementExtremeValue
    variable = tensile_yield_fcn
    outputs = 'console'
  [../]
  [./compressive_max]
    type = ElementExtremeValue
    variable = compressive_yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero_shear]
    type = FunctionValuePostprocessor
    function = shear_should_be_zero_fcn
  [../]
  [./should_be_zero_compressive]
    type = FunctionValuePostprocessor
    function = compressive_should_be_zero_fcn
  [../]
  [./should_be_zero_tensile]
    type = FunctionValuePostprocessor
    function = tensile_should_be_zero_fcn
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console'
  [../]
[]

[Functions]
  [./shear_should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'shear_max'
  [../]
  [./tensile_should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'tensile_max'
  [../]
  [./compressive_should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'compressive_max'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1000
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E3
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    yield_function_tolerance = 1      # irrelevant here
    internal_constraint_tolerance = 1 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = dp
    perform_finite_strain_rotations = false
  [../]
  [./dp]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-3
    tip_smoother = 0.1E3
    smoothing_tol = 0.1E3
    max_NR_iterations = 1000
    small_dilation = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

test/tests/transfers/multiapp_interpolation_transfer/fromrestrictedsub_sub.i

[Mesh]
  [file]
    type = FileMeshGenerator
    file = 2subdomains.e
  []
  [boundary_fuel_side]
    input = file
    type = SubdomainBoundingBoxGenerator
    block_id = 2
    bottom_left = '0.2 0 0'
    top_right = '0.3 1 0'
  []
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [elemental]
    block = '2'
    order = CONSTANT
    family = MONOMIAL
  []
  [nodal]
    block = '2'
  []
[]


[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[AuxKernels]
  [elemaux]
    type = CoupledAux
    variable = elemental
    coupled = u
    block = '2'
  []
  [nodaux]
    type = CoupledAux
    variable = nodal
    coupled = u
    block = '2'
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/actually_explicit_euler/actually_explicit_euler_lumped.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 'left'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 'right'
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.001


  [./TimeIntegrator]
    type = ActuallyExplicitEuler
    solve_type = lumped
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/auxkernels/time_integration/time_integration.i

# This test covers the usage of the VariableTimeIntegrationAux
# kernel. Here we test three different schemes for integrating a field
# variable in time.  Midpoint, Trapezoidal, and Simpson's rule are
# used.  For this test, we use a manufactured solution and we compare
# the Trapezoidal and Simpson's rule, which must be exact for this
# exact solution, which is a linear function of time.
#
# The set up problem is
#
#  du/dt - Laplacian(u) = Q
#
# with exact solution: u = t*(x*x+y*y).
[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD9
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    x = '0.01 0.1'
    y = '0.005 0.05'
  [../]
[]

[Variables]
  [./u]
    initial_condition = 0.0
    family = LAGRANGE
    order = SECOND
  [../]
[]

[Kernels]
  active = 'diff timederivative sourceterm'
  [./diff]
     type = Diffusion
     variable = u
  [../]
  [./timederivative]
     type = TimeDerivative
     variable = u
  [../]
  [./sourceterm]
     type = BodyForce
     variable = u
     function = Source
  [../]
[]

[AuxVariables]
  active = 'v_midpoint v_trapazoid v_simpson'
  [./v_midpoint]
  [../]
  [./v_trapazoid]
  [../]
  [./v_simpson]
  [../]
[]

[AuxKernels]
  [./MidpointTimeIntegrator]
    type = VariableTimeIntegrationAux
    variable_to_integrate = u
    variable = v_midpoint
    order = 1
  [../]
  [./TrapazoidalTimeIntegrator]
    type = VariableTimeIntegrationAux
    variable_to_integrate = u
    variable = v_trapazoid
    order = 2
  [../]
  [./SimpsonsTimeIntegrator]
    type = VariableTimeIntegrationAux
    variable_to_integrate = u
    variable = v_simpson
    order = 3
  [../]
[]

[BCs]
  active = 'RightBC LeftBC TopBC BottomBC'
 [./RightBC]
    type = FunctionDirichletBC
    variable = u
    function = RightBC
    boundary = 'right'
 [../]
 [./LeftBC]
    type = FunctionDirichletBC
    variable = u
    function = LeftBC
    boundary = 'left'
 [../]
 [./TopBC]
    type = FunctionDirichletBC
    variable = u
    function = TopBC
    boundary = 'top'
 [../]
 [./BottomBC]
    type = FunctionDirichletBC
    variable = u
    function = BottomBC
    boundary = 'bottom'
 [../]
[]

[Functions]
  active = 'Soln Source TopBC BottomBC RightBC LeftBC'
 [./Soln]
    type = ParsedFunction
    value = 't*(x*x+y*y)'
 [../]
 [./Source]
    type = ParsedFunction
    value = '(x*x + y*y) - 4*t'
 [../]
 [./TopBC]
    type = ParsedFunction
    value = 't*(x*x+1)'
 [../]
 [./BottomBC]
    type = ParsedFunction
    value = 't*x*x'
 [../]
 [./RightBC]
   type = ParsedFunction
   value = 't*(y*y+1)'
 [../]
 [./LeftBC]
    type = ParsedFunction
    value = 't*y*y'
  [../]
[]
[Postprocessors]
  [./l2_error]
    type = NodalL2Error
    variable = u
    function = Soln
  [../]
[]

[Executioner]
  type = Transient

  end_time = 0.1
#  dt = 0.1
#  num_steps = 10
  [./TimeStepper]
     type = FunctionDT
     function = dts
  [../]

  nl_abs_tol = 1.e-15
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/porous_flow/test/tests/mass_conservation/mass10.i

# Checking that the mass postprocessor throws the correct error when kernel_variable_numer is illegal

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./sat]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]

[ICs]
  [./pinit]
    type = ConstantIC
    value = 1
    variable = pp
  [../]
  [./satinit]
    type = FunctionIC
    function = 1-x
    variable = sat
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sat
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp sat'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 0.1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = pp
    phase1_saturation = sat
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Postprocessors]
  [./comp1_total_mass]
    type = PorousFlowFluidMass
    fluid_component = 1
    kernel_variable_number = 2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

modules/tensor_mechanics/test/tests/mean_cap_TC/random04.i

# apply many random large deformations, checking that the algorithm returns correctly to
# the yield surface each time.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./max_yield_fcn]
    type = ElementExtremeValue
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console'
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'max_yield_fcn'
  [../]
[]

[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.1
    internal_limit = 0.1
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = -1.5
    value_residual = 0
    internal_limit = 0.1
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
    use_custom_returnMap = true
    use_custom_cto = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    max_NR_iterations = 2
    ep_plastic_tolerance = 1E-6
    plastic_models = cap
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random04
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/phase_field/test/tests/PolynomialFreeEnergy/split_order6_test.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 15
  xmin = 0
  xmax = 125
[]

[GlobalParams]
  polynomial_order = 6
[]

[Variables]
  [./c]
  [../]
  [./w]
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 60.0
    invalue = 1.0
    outvalue = 0.1
    int_width = 60.0
    variable = c
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    kappa_name = kappa
    w = w
    f_name = F
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[Materials]
  [./Copper]
    type = PFParamsPolyFreeEnergy
    c = c
    T = 1000 # K
    int_width = 30.0
    length_scale = 1.0e-9
    time_scale = 1.0e-9
    D0 = 3.1e-5 # m^2/s, from Brown1980
    Em = 0.71 # in eV, from Balluffi1978 Table 2
    Ef = 1.28 # in eV, from Balluffi1978 Table 2
    surface_energy = 0.7 # Total guess
  [../]
  [./free_energy]
    type = PolynomialFreeEnergy
    c = c
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  start_time = 0.0
  num_steps = 50
  dt = 15
  petsc_options_iname = -pc_type
  petsc_options_value = lu
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/dirackernels/bh_except14.i

# fully-saturated
# production
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = bh02_huge.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/phase_field/test/tests/initial_conditions/SmoothSuperellipsoidIC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c]
    type = SmoothSuperellipsoidIC
    variable = c
    x1 = 25.0
    y1 = 25.0
    a = 8.0
    b = 12.0
    n = 3.5
    invalue = 1.0
    outvalue = -0.8
    int_width = 4.0
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 20
  l_tol = 1.0e-4
  nl_max_its = 40
  nl_rel_tol = 1e-9

  start_time = 0.0
  num_steps = 1
  dt = 2.0
[]

[Outputs]
  exodus = false
  [./out]
    type = Exodus
    refinements = 2
  [../]
[]

modules/tensor_mechanics/test/tests/capped_drucker_prager/small_deform3_outer_tip.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-1.7E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E5
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E5
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    mc_interpolation_scheme = outer_tip
    yield_function_tolerance = 1      # irrelevant here
    internal_constraint_tolerance = 1 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-8
    tip_smoother = 8
    smoothing_tol = 1E-7
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3_outer_tip
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/porous_flow/test/tests/infiltration_and_drainage/wli01.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1000
  ny = 1
  xmin = -10000
  xmax = 0
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = pressure
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureBW
    Sn = 0.0
    Ss = 1.0
    C = 1.5
    las = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 4
      density0 = 10
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pressure
    capillary_pressure = pc
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityBW
    Sn = 0.0
    Ss = 1.0
    Kn = 0
    Ks = 1
    C = 1.5
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.25
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0  0 1 0  0 0 1'
  [../]
[]

[Variables]
  [./pressure]
    initial_condition = -1E-4
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pressure
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pressure
    gravity = '-0.1 0 0'
  [../]
[]

[AuxVariables]
  [./SWater]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./SWater]
    type = MaterialStdVectorAux
    property = PorousFlow_saturation_qp
    index = 0
    variable = SWater
  [../]
[]

[BCs]
  [./base]
    type = DirichletBC
    boundary = 'left'
    value = -1E-4
    variable = pressure
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10      1E-10      10000'
  [../]
[]

[VectorPostprocessors]
  [./swater]
    type = LineValueSampler
    variable = SWater
    start_point = '-5000 0 0'
    end_point = '0 0 0'
    sort_by = x
    num_points = 71
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 1000
  dt = 1
[]

[Outputs]
  file_base = wli01
  sync_times = '100 500 1000'
  [./exodus]
    type = Exodus
    sync_only = true
  [../]
  [./along_line]
    type = CSV
    sync_only = true
  [../]
[]

modules/combined/test/tests/frictional_contact/sliding_elastic_blocks_2d/sliding_elastic_blocks_2d.i

[Mesh]
  file = sliding_elastic_blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    save_in = 'saved_x saved_y'
    diag_save_in = 'diag_saved_x diag_saved_y'
  [../]
[]

[AuxKernels]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip]
    type = PenetrationAux
    variable = accum_slip
    execute_on = timestep_end
    quantity = accumulated_slip
    boundary = 3
    paired_boundary = 2
  [../]
  [./tangential_force_x]
    type = PenetrationAux
    variable = tang_force_x
    execute_on = timestep_end
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./tangential_force_y]
    type = PenetrationAux
    variable = tang_force_y
    execute_on = timestep_end
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.005
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1.0e7
    poissons_ratio = 0.3
  [../]
  [./right]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.05
  num_steps = 1000
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-09
  dtmin = 0.01
  l_tol = 1e-3

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  file_base = sliding_elastic_blocks_2d_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    system = constraint
    friction_coefficient = '0.25'
    penalty = 1e6
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    slave = 3
    master = 2
  [../]
[]

modules/porous_flow/test/tests/jacobian/heat_vol_exp01.i

# Tests the PorousFlowHeatVolumetricExpansion kernel
# Fluid with constant bulk modulus, van-Genuchten capillary, THM porosity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = 0
  PorousFlowDictator = dictator
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
  [./temperature]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./disp_y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./disp_z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
  [./p]
    type = RandomIC
    min = -1
    max = 0
    variable = porepressure
  [../]
  [./t]
    type = RandomIC
    min = 1
    max = 2
    variable = temperature
  [../]
[]

[BCs]
  # necessary otherwise volumetric strain rate will be zero
  [./disp_x]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./disp_y]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'left right'
  [../]
  [./disp_z]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'left right'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./dummy]
    type = TimeDerivative
    variable = porepressure
  [../]
  [./temp]
    type = PorousFlowHeatVolumetricExpansion
    variable = temperature
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure temperature disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      cv = 1.3
    [../]
  [../]
[]

[Materials]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '2 3'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss_nodal]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    thermal = true
    porosity_zero = 0.1
    biot_coefficient = 0.5
    solid_bulk = 1
    thermal_expansion_coeff = 0.1
    reference_temperature = 0.1
    reference_porepressure = 0.2
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.1
    density = 0.5
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jacobian2
  exodus = false
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test3ns.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test3ns_out
  exodus = true
[]

modules/richards/test/tests/buckley_leverett/bl01_adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 15
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2.0E6
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-4
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]

[AuxKernels]
  active = 'calculate_seff'
  [./calculate_seff]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[BCs]
  active = 'left'
  [./left]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 980000
  [../]
[]

[Kernels]
  active = 'richardsf richardst'

  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[Functions]
 active = 'initial_pressure'
  [./initial_pressure]
    type = ParsedFunction
    value = max((1000000-x/5*1000000)-20000,-20000)
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Adaptivity]
  marker = errorfrac
  max_h_level = 3
  [./Indicators]
    [./error]
      type = RichardsFluxJumpIndicator
      variable = pressure
    [../]
  [../]
  [./Markers]
    [./errorfrac]
      type = ErrorFractionMarker
      refine = 0.5
      coarsen = 0.3
      indicator = error
   [../]
  [../]
[]

[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 20'
  [../]

[]

[Executioner]
  type = Transient
  end_time = 50


  [./TimeStepper]
    type = FunctionControlledDT
    functions = ''
    maximums = ''
    minimums = ''
    dt = 0.3
    increment = 1.1
    decrement = 1.1
    maxDt = 0.3
    minDt = 1E-5
    adapt_log = false
    percent_change = 0.1
  [../]

[]

[Outputs]
  file_base = bl01_adapt
  interval = 10000
  exodus = true
[]

modules/phase_field/examples/interfacekernels/interface_gradient.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 50
    ny = 50
  []
  [./box1]
    input = gen
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '0.51 1 0'
  [../]
  [./box2]
    input = box1
    type = SubdomainBoundingBoxGenerator
    block_id = 2
    bottom_left = '0.49 0 0'
    top_right = '1 1 0'
  [../]
  [./iface]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = 1
    paired_block = 2
    new_boundary = 10
    input = box2
  [../]
  [./rotate]
    type = TransformGenerator
    transform = ROTATE
    vector_value = '5 0 0'
    input = iface
  [../]
[]

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Variables]
  [./u]
    block = 1
    [./InitialCondition]
      type = FunctionIC
      function = 'r:=sqrt((x-0.4)^2+(y-0.5)^2);if(r<0.05,5,1)'
    [../]
  [../]
  [./v]
    block = 2
    initial_condition = 0.8
  [../]
[]

[Kernels]
  [./u_diff]
    type = Diffusion
    variable = u
    block = 1
  [../]
  [./u_dt]
    type = TimeDerivative
    variable = u
    block = 1
  [../]
  [./v_diff]
    type = Diffusion
    variable = v
    block = 2
  [../]
  [./v_dt]
    type = TimeDerivative
    variable = v
    block = 2
  [../]
[]

[InterfaceKernels]
  [./flux_continuity]
    type = InterfaceDiffusionFluxMatch
    variable = u
    boundary = 10
    neighbor_var = v
  [../]
  [./diffusion_surface_term]
    type = InterfaceDiffusionBoundaryTerm
    boundary = 10
    variable = u
    neighbor_var = v
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  dt = 0.001
  num_steps = 20
[]

[Outputs]
  [./out]
    type = Exodus
    use_problem_dimension = false
  [../]
  print_linear_residuals = false
[]

modules/chemical_reactions/test/tests/desorption/mollified_langmuir_jac_ad2.i

# testing adsorption jacobian with large mollification parameter
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[Variables]
  [./pressure]
  [../]
  [./conc]
  [../]
[]

[ICs]
  [./p_ic]
    type = RandomIC
    variable = pressure
    min = 0
    max = 1
  [../]
  [./conc_ic]
    type = RandomIC
    variable = conc
    min = -1
    max = 1
  [../]
[]


[Kernels]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    variable = conc
    pressure_var = pressure
  [../]
  [./flux_to_porespace]
    type = DesorptionToPorespace
    variable = pressure
    conc_var = conc
  [../]
[]

[Materials]
  [./mollified_langmuir_params]
    type = MollifiedLangmuirMaterial
    block = 0
    one_over_desorption_time_const = 0
    one_over_adsorption_time_const = 0.813
    langmuir_density = 6.34
    langmuir_pressure = 1.5
    conc_var = conc
    pressure_var = pressure
    mollifier = 1E2
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = langmuir_jac1
[]

modules/tensor_mechanics/test/tests/beam/static/euler_finite_rot_y.i

# Large strain/large rotation cantilever beam test

# A 300 N point load is applied at the end of a 4 m long cantilever beam.
# Young's modulus (E) = 1e4
# Shear modulus (G) = 1e8
# shear coefficient (k) = 1.0
# Poisson's ratio (nu) = -0.99995
# Area (A) = 1.0
# Iy = Iz = 0.16

# The dimensionless parameter alpha = kAGL^2/EI = 1e6
# Since the value of alpha is quite high, the beam behaves like
# a thin beam where shear effects are not significant.

# Beam deflection:
# small strain+rot = 3.998 m (exact 4.0)
# large strain + small rotation = -0.05 m in x and 3.74 m in y
# large rotations + small strain = -0.92 m in x and 2.38 m in y
# large rotations + large strain = -0.954 m in x and 2.37 m in y (exact -1.0 m in x and 2.4 m in y)

# References:
# K. E. Bisshopp and D.C. Drucker, Quaterly of Applied Mathematics, Vol 3, No. 3, 1945.

[Mesh]
  type = FileMesh
  file = beam_finite_rot_test_2.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = 1
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = 1
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = 1
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = 2
    function = force
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 2.0  8.0'
    y = '0.0 300.0 300.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = 'none'
  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre     boomeramg     4'
  nl_max_its = 50
  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-7
  l_max_its = 50
  dt = 0.05
  end_time = 2.1
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1e4
    poissons_ratio = -0.99995
    shear_coefficient = 1.0
    block = 1
  [../]
  [./strain]
    type = ComputeFiniteBeamStrain
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 1.0
    Ay = 0.0
    Az = 0.0
    Iy = 0.16
    Iz = 0.16
    y_orientation = '0.0 1.0 0.0'
    large_strain = true
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 1
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./rot_z]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = rot_z
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/rdg/test/tests/advection_1d/block_restrictable.i

############################################################
[GlobalParams]
  order = CONSTANT
  family = MONOMIAL
  u = u
  slope_limiting = lslope
  implicit = false
[]
############################################################
[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 1
    xmin = 0
    xmax = 1
    nx = 100
  []
  [./subdomain1]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0.5 0 0'
    block_id = 1
    top_right = '1.0 1.0 0'
    input = gen
  [../]
  [./interface]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = '0'
    paired_block = '1'
    new_boundary = 'master0_interface'
    input = subdomain1
  [../]
  [./interface_again]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = '1'
    paired_block = '0'
    new_boundary = 'master1_interface'
    input = interface
  [../]
[]
############################################################
[Functions]
  [./ic_u]
    type = PiecewiseConstant
    axis = x
    direction = right
    xy_data = '0.1 0.5
               0.4 1.0
               0.5 0.5'
  [../]
[]
############################################################
[UserObjects]
  [./lslope]
    type = AEFVSlopeLimitingOneD
    execute_on = 'linear'
    scheme = 'superbee' #none | minmod | mc | superbee
    block = 0
  [../]

  [./internal_side_flux]
    type = AEFVUpwindInternalSideFlux
    execute_on = 'linear'
  [../]

  [./free_outflow_bc]
    type = AEFVFreeOutflowBoundaryFlux
    execute_on = 'linear'
  [../]
[]
############################################################
[Variables]
  [./u]
    block = 0
  [../]
  [./v]
    block = 1
    family = LAGRANGE
    order = FIRST
  [../]
[]
############################################################
[ICs]
  [./u_ic]
    type = FunctionIC
    variable = 'u'
    function = ic_u
  [../]
[]
############################################################
[Kernels]
  [./time_u]
    implicit = true
    type = TimeDerivative
    variable = u
    block = 0
  [../]
  [./diff_v]
    implicit = true
    type = Diffusion
    variable = v
    block = 1
  [../]
  [./time_v]
    implicit = true
    type = TimeDerivative
    variable = v
    block = 1
  [../]
[]
############################################################
[DGKernels]
  [./concentration]
    type = AEFVKernel
    variable = u
    component = 'concentration'
    flux = internal_side_flux
    block = 0
  [../]
[]
############################################################
[BCs]
  [./concentration]
    type = AEFVBC
    boundary = 'left master0_interface'
    variable = u
    component = 'concentration'
    flux = free_outflow_bc
  [../]
  [./v_left]
    type = DirichletBC
    boundary = 'master1_interface'
    variable = v
    value = 1
  [../]
  [./v_right]
    type = DirichletBC
    boundary = 'right'
    variable = v
    value = 0
  [../]
[]
############################################################
[Materials]
  [./aefv]
    type = AEFVMaterial
    block = 0
  [../]
  [./dummy_1]
    type = GenericConstantMaterial
    block = 1
    prop_names = ''
    prop_values = ''
  [../]
[]
############################################################
[Executioner]
  type = Transient
  [./TimeIntegrator]
    type = ExplicitMidpoint
  [../]
  solve_type = 'LINEAR'

  l_tol = 1e-4
  nl_rel_tol = 1e-20
  nl_abs_tol = 1e-8
  nl_max_its = 60

  start_time = 0.0
  num_steps = 4 # 4 | 400 for complete run
  dt = 5e-4
  dtmin = 1e-6
[]

[Outputs]
  [./out]
    type = Exodus
    interval = 2
  [../]
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/tensile/small_deform2.i

# checking for small deformation
# A single element is stretched by 1E-6m in all directions.
# tensile_strength is set to 1Pa, and smoother = 0.5
# Then the final stress should return to the yield surface and all principal stresses should be 0.5

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./mc]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    yield_function_tolerance = 1E-6
    tensile_tip_smoother = 0.5
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/phase_field/test/tests/phase_field_kernels/nonuniform_barrier_coefficient.i

# This material tests the kernels ACBarrierFunction and ACKappaFunction for a
# multiphase system.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  xmin = -200
  xmax = 200
  ymin = -200
  ymax = 200
  uniform_refine = 0
[]

[Variables]
  [./gr0]
  [../]
  [./gr1]
  [../]
[]

[ICs]
  [./gr0_IC]
    type = BoundingBoxIC
    variable = gr0
    x1 = -80
    y1 = -80
    x2 = 80
    y2 = 80
    inside = 0
    outside = 1
  [../]
  [./gr1_IC]
    type = BoundingBoxIC
    variable = gr1
    x1 = -80
    y1 = -80
    x2 = 80
    y2 = 80
    inside = 1
    outside = 0
  [../]
[]

[Materials]
  [./constants]
    type = GenericConstantMaterial
    prop_names =  'L   gamma E0 E1'
    prop_values = '0.1 1.5   3  1'
  [../]
  [./h0]
    type = DerivativeParsedMaterial
    f_name = h0
    args = 'gr0 gr1'
    function = 'gr0^2 / (gr0^2 + gr1^2)'
    derivative_order = 2
  [../]
  [./h1]
    type = DerivativeParsedMaterial
    f_name = h1
    args = 'gr0 gr1'
    function = 'gr1^2 / (gr0^2 + gr1^2)'
    derivative_order = 2
  [../]
  [./mu]
    type = DerivativeParsedMaterial
    f_name = mu
    args = 'gr0 gr1'
    constant_names = 'mag'
    constant_expressions = '16'
    function = 'mag * (gr0^2 * gr1^2 + 0.1)'
    derivative_order = 2
  [../]
  [./kappa]
    type = DerivativeParsedMaterial
    f_name = kappa
    args = 'gr0 gr1'
    material_property_names = 'h0(gr0,gr1) h1(gr0,gr1)'
    constant_names = 'mag0 mag1'
    constant_expressions = '200 100'
    function = 'h0*mag0 + h1*mag1'
    derivative_order = 2
  [../]
[]

[Kernels]
  [./gr0_time]
    type = TimeDerivative
    variable = gr0
  [../]
  [./gr0_interface]
    type = ACInterface
    variable = gr0
    args = 'gr1'
    mob_name = L
    kappa_name = 'kappa'
  [../]
  [./gr0_switching]
    type = ACSwitching
    variable = gr0
    args = 'gr1'
    hj_names = 'h0 h1'
    Fj_names = 'E0 E1'
    mob_name = L
  [../]
  [./gr0_multi]
    type = ACGrGrMulti
    variable = gr0
    v = 'gr1'
    mob_name = L
    gamma_names = 'gamma'
  [../]
  [./gr0_barrier]
    type = ACBarrierFunction
    variable = gr0
    mob_name = L
    gamma = gamma
    v = 'gr1'
  [../]
  [./gr0_kappa]
    type = ACKappaFunction
    variable = gr0
    mob_name = L
    kappa_name = kappa
    v = 'gr1'
  [../]

  [./gr1_time]
    type = TimeDerivative
    variable = gr1
  [../]
  [./gr1_interface]
    type = ACInterface
    variable = gr1
    args = 'gr0'
    mob_name = L
    kappa_name = 'kappa'
  [../]
  [./gr1_switching]
    type = ACSwitching
    variable = gr1
    args = 'gr0'
    hj_names = 'h0 h1'
    Fj_names = 'E0 E1'
    mob_name = L
  [../]
  [./gr1_multi]
    type = ACGrGrMulti
    variable = gr1
    v = 'gr0'
    mob_name = L
    gamma_names = 'gamma'
  [../]
  [./gr1_barrier]
    type = ACBarrierFunction
    variable = gr1
    mob_name = L
    gamma = gamma
    v = 'gr0'
  [../]
  [./gr1_kappa]
    type = ACKappaFunction
    variable = gr1
    mob_name = L
    kappa_name = kappa
    v = 'gr0'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart -sub_ksp_type'
  petsc_options_value = ' asm      ilu          1               31                 preonly'
  nl_max_its = 20
  l_max_its = 30
  l_tol = 1e-4
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-12
  start_time = 0
  num_steps = 3
  dt = 1
[]

[Outputs]
  exodus = true
[]

test/tests/restart/duplicate_node/duplicate_node.i

[Mesh]
  type = FileMesh
  # Contains multiple nodes in the same positions
  file = duplicate_nodes.e
  dim = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = top
    value = 1
  [../]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/new_initial_conditions/GrainGrowth_initial_from_file.i

[Mesh]
  file = prepare_mesh_out.e
[]

[Modules]
  [./PhaseField]
    [./GrainGrowth]
      op_num = 4
      var_name_base = gr
      initial_from_file = true
      variable_mobility = false
    [../]
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    prop_names = 'L mu gamma_asymm kappa_op'
    prop_values = '0 0 0 0'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 2
[]

[Problem]
  kernel_coverage_check = false
  solve = false
[]

[Outputs]
  exodus = true
  execute_on = FINAL
  hide = bnds
[]

modules/phase_field/test/tests/grain_tracker_test/grain_halo_over_bc.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 35
  ny = 35
  xmax = 1000
  ymax = 1000
  elem_type = QUAD4

  parallel_type = replicated # Periodic BCs
[]

[GlobalParams]
  op_num = 8  # Number of order parameters used
  var_name_base = 'gr'  # Base name of grains
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 12
    grain_num = 15      # Number of grains
    coloring_algorithm = bt
  [../]
  [./grain_tracker]
    type = GrainTracker
    threshold = 0.2
    connecting_threshold = 0.08
    flood_entity_type = ELEMENTAL
    compute_halo_maps = true    # Only necessary for displaying HALOS
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ghost_regions]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halos]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./proc_id]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halo0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halo1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halo2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halo3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halo4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halo5]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halo6]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halo7]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./bnds_aux]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
    execute_on = 'initial timestep_end'
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
    execute_on = 'initial timestep_end'
  [../]
  [./ghosted_entities]
    type = FeatureFloodCountAux
    variable = ghost_regions
    flood_counter = grain_tracker
    field_display = GHOSTED_ENTITIES
    execute_on = 'initial timestep_end'
  [../]
  [./halos]
    type = FeatureFloodCountAux
    variable = halos
    flood_counter = grain_tracker
    field_display = HALOS
    execute_on = 'initial timestep_end'
  [../]
  [./proc_id]
    type = ProcessorIDAux
    variable = proc_id
  [../]
  [./halo0]
    type = FeatureFloodCountAux
    variable = halo0
    map_index = 0
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo1]
    type = FeatureFloodCountAux
    variable = halo1
    map_index = 1
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo2]
    type = FeatureFloodCountAux
    variable = halo2
    map_index = 2
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo3]
    type = FeatureFloodCountAux
    variable = halo3
    map_index = 3
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo4]
    type = FeatureFloodCountAux
    variable = halo4
    map_index = 4
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo5]
    type = FeatureFloodCountAux
    variable = halo5
    map_index = 5
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo6]
    type = FeatureFloodCountAux
    variable = halo6
    map_index = 6
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo7]
    type = FeatureFloodCountAux
    variable = halo7
    map_index = 7
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
[]

[BCs]
  [./Periodic]
    [./top_bottom]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./CuGrGr]
    type = GBEvolution
    T = '450'
    wGB = 125
    GBmob0 = 2.5e-6
    Q = 0.23
    GBenergy = 0.708
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 101 ds'
  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 40
  nl_rel_tol = 1e-10
  dt = 25
  num_steps = 1
[]

[Outputs]
  exodus = true  # Exodus file will be outputted
[]

modules/solid_mechanics/test/tests/combined_creep_plasticity/plasticity_only_combined_class_sm1.i

#
# Test considers only linear strain hardening by setting the power-law
#   creep coefficient to zero.
#
# The mesh is a 1x1x1 cube pulled in the y direction.  Young's
#    modulus is 2.4e5, and the yield stress is 2.4e2.  This gives
#    a strain at yield of 0.001.  This strain is reached after 5
#    solves.  As the deformation continues, the stress follows the
#    hardening constant slope (1206).
#

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t/5.0
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]

  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]

  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]

  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]

 []


[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./lsh]
    type = PLC_LSH
    block = 0
    youngs_modulus = 2.4e5
    poissons_ratio = .3
    yield_stress = 2.4e2
    hardening_constant = 1206.
    coefficient = 0.0
    n_exponent = 1.0
    activation_energy = 0.0
    relative_tolerance = 1.e-8
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient

  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
  start_time = 0.0
  end_time = 0.02
  dt = 1e-3
[]

[Outputs]
  file_base = plasticity_only_combined_class_sm_out
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/Wave_1_D/Newmark_time_integration/wave_bc_1d.i

# Wave propogation in 1-D using Newmark time integration
#
# The test is for an 1-D bar element of length 4m  fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the other end.
# beta and gamma are Newmark time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel +  K*disp = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# This equation is equivalent to:
#
# density*accel + Div Stress= 0
#
# The first term on the left is evaluated using the Inertial force kernel
# The last term on the left is evaluated using StressDivergenceTensors
#
# The displacement at the second, third and fourth node at t = 0.1 are
# -8.021501116638234119e-02, 2.073994362053969628e-02 and  -5.045094181261772920e-03, respectively
[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  []
[]


[Kernels]
 [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    use_displaced_mesh = false
    beta = 0.3025
    gamma = 0.6
    eta = 0
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    use_displaced_mesh = false
    beta = 0.3025
    gamma = 0.6
    eta = 0
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    use_displaced_mesh = false
    beta = 0.3025
    gamma = 0.6
    eta = 0
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.6
    execute_on = timestep_end
  [../]
[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
   type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
    [./bottom_x]
      type = DirichletBC
      variable = disp_x
      boundary = bottom
      value=0.0
    [../]
    [./bottom_z]
      type = DirichletBC
      variable = disp_z
      boundary = bottom
      value=0.0
    [../]
    [./bottom_y]
      type = FunctionDirichletBC
      variable = disp_y
      boundary = bottom
      function = displacement_bc
    [../]
[]

[Materials]
  [./constant]
    type = ComputeIsotropicElasticityTensor
    block = '0'
    youngs_modulus = 1.0
    poissons_ratio = 0.0
  [../]
  [./constant_stress]
    type = ComputeFiniteStrainElasticStress
    block = '0'
  [../]
  [./density]
    type = GenericConstantMaterial
    block = '0'
    prop_names = 'density'
    prop_values = '1'
  [../]
[]


[Executioner]

  type = Transient
  start_time = 0
  end_time = 6.0
  dtmax = 0.1
  dtmin = 0.1
  l_tol = 1e-12
  nl_rel_tol = 1e-12
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.001 1 0.001 0.0 0.0'
    scale_factor = 7750
  [../]
  [./displacement_ic]
    type = PiecewiseLinear
    axis = y
    x = '0.0 0.3 0.4 0.5 0.6 0.7 1.0'
    y = '0.0 0.0 0.0001 1.0 0.0001 0.0 0.0'
    scale_factor = 0.1
  [../]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
    [./disp_1]
       type = NodalVariableValue
       nodeid = 1
       variable = disp_y
     [../]
    [./disp_2]
       type = NodalVariableValue
       nodeid = 3
       variable = disp_y
     [../]
    [./disp_3]
       type = NodalVariableValue
       nodeid = 10
       variable = disp_y
     [../]
    [./disp_4]
       type = NodalVariableValue
       nodeid = 14
       variable = disp_y
     [../]
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

test/tests/time_steppers/timesequence_stepper/timesequence_restart1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax =  1
  ymin = -1
  ymax =  1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  end_time = 4.0
  [./TimeStepper]
    type = TimeSequenceStepper
    time_sequence  = '0   0.85 1.3 2 4'
  [../]
[]

[Outputs]
  exodus = true
  [./checkpoint]
    type = Checkpoint
    num_files = 4
  [../]
[]

modules/richards/test/tests/rogers_stallybrass_clements/rsc_lumped_01.i

# RSC test with high-res time and spatial resolution
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 600
  ny = 1
  xmin = 0
  xmax = 10 # x is the depth variable, called zeta in RSC
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityOil'
  relperm_UO = 'RelPerm RelPerm'
  SUPG_UO = 'SUPGstandard SUPGstandard'
  sat_UO = 'Saturation Saturation'
  seff_UO = 'SeffWater SeffOil'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '3E-3 3E-2 0.05'
    x = '0 1 5'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater poil'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 10
    bulk_mod = 2E9
  [../]
  [./DensityOil]
    type = RichardsDensityConstBulk
    dens0 = 20
    bulk_mod = 2E9
  [../]
  [./SeffWater]
    type = RichardsSeff2waterRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
  [./SeffOil]
    type = RichardsSeff2gasRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
  [./RelPerm]
    type = RichardsRelPermMonomial
    simm = 0
    n = 1
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E-2
  [../]
[]


[Variables]
  [./pwater]
  [../]
  [./poil]
  [../]
[]

[ICs]
  [./water_init]
    type = ConstantIC
    variable = pwater
    value = 0
  [../]
  [./oil_init]
    type = ConstantIC
    variable = poil
    value = 15
  [../]
[]

[Kernels]
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstoil]
    type = RichardsLumpedMassChange
    variable = poil
  [../]
  [./richardsfoil]
    type = RichardsFlux
    variable = poil
  [../]
[]


[AuxVariables]
  [./SWater]
  [../]
  [./SOil]
  [../]
[]


[AuxKernels]
  [./Seff1VGwater_AuxK]
    type = RichardsSeffAux
    variable = SWater
    seff_UO = SeffWater
    pressure_vars = 'pwater poil'
  [../]
  [./Seff1VGoil_AuxK]
    type = RichardsSeffAux
    variable = SOil
    seff_UO = SeffOil
    pressure_vars = 'pwater poil'
  [../]
[]


[BCs]
# we are pumping water into a system that has virtually incompressible fluids, hence the pressures rise enormously.  this adversely affects convergence because of almost-overflows and precision-loss problems.  The fixed things help keep pressures low and so prevent these awful behaviours.   the movement of the saturation front is the same regardless of the fixed things.
  active = 'recharge fixedoil fixedwater'
  [./recharge]
    type = RichardsPiecewiseLinearSink
    variable = pwater
    boundary = 'left'
    pressures = '-1E10 1E10'
    bare_fluxes = '-1 -1'
    use_mobility = false
    use_relperm = false
  [../]
  [./fixedwater]
    type = DirichletBC
    variable = pwater
    boundary = 'right'
    value = 0
  [../]
  [./fixedoil]
    type = DirichletBC
    variable = poil
    boundary = 'right'
    value = 15
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.25
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 2E-3'
    gravity = '0E-0 0 0'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]


[Outputs]
  file_base = rsc_lumped_01
  interval = 100000
  execute_on = 'initial final'
  exodus = true
[]

modules/combined/test/tests/hertz_contact/hertz_contact_hex20.i

# Hertz Contact: Sphere on sphere

# Spheres have the same radius, Young's modulus, and Poisson's ratio.

# Define E:
# 1/E = (1-nu1^2)/E1 + (1-nu2^2)/E2
#
# Effective radius R:
# 1/R = 1/R1 + 1/R2
#
# F is the applied compressive load.
#
# Area of contact a::
# a^3 = 3FR/4E
#
# Depth of indentation d:
# d = a^2/R
#
#
# Let R1 = R2 = 2.  Then R = 1.
#
# Let nu1 = nu2 = 0.25, E1 = E2 = 1.40625e7.  Then E = 7.5e6.
#
# Let F = 10000.  Then a = 0.1, d = 0.01.
#

[Mesh]#Comment
  file = hertz_contact_hex20.e
  displacements = 'disp_x disp_y disp_z'
[] # Mesh

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 795.77471545947674 # 10000/pi/2^2
  [../]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.  1.    2.'
    y = '0. -0.01 -0.01'
  [../]
[] # Functions

[Variables]

  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]

  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]

  [./disp_z]
    order = SECOND
    family = LAGRANGE
  [../]

[] # Variables

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydrostatic]
    order = CONSTANT
    family = MONOMIAL
  [../]

[] # AuxVariables

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]

  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
  [../]
  [./hydrostatic]
    type = MaterialTensorAux
    tensor = stress
    variable = hydrostatic
    quantity = hydrostatic
  [../]

[] # AuxKernels

[BCs]

  [./base_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1000
    value = 0.0
  [../]
  [./base_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1000
    value = 0.0
  [../]
  [./base_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1000
    value = 0.0
  [../]

  [./symm_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./symm_z]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]
  [./disp_y]
    type = FunctionDirichletBC
    variable = disp_y
    component = 1
    boundary = 2
    function = disp_y
  [../]

[] # BCs

[Contact]
  [./dummy_name]
    master = 1000
    slave = 100
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    penalty = 1e7
  [../]
[]

[Materials]

  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1.40625e7
    poissons_ratio = 0.25
  [../]
  [./stiffStuff2] # Rigid block
    type = Elastic
    block = 1000

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

[] # Materials

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'


  line_search = 'none'


  nl_abs_tol = 1e-7

  l_max_its = 200

  start_time = 0.0
  dt = 0.5
  end_time = 2.0

  [./Quadrature]
    order = THIRD
  [../]

[] # Executioner

[Postprocessors]
  [./maxdisp]
    type = NodalVariableValue
    nodeid = 386 # 387-1 where 387 is the exodus node number of the top-center node
    variable = disp_y
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform12.i

# Using CappedMohrCoulomb with compressive failure only
# checking for small deformation
# A single element is stretched equally in all directions.
# This causes the return direction to be along the sigma_I = sigma_II = sigma_III line
# compressive_strength is set to 1Pa, and smoothing_tol = 0.1Pa
# The smoothed yield function comes from two smoothing operations.
# The first is on sigma_I and sigma_II (sigma_I >= sigma_II >= sigma_III):
# yf = -sigma_I + ismoother(0) - compressive_strength
#    = -sigma_I + (0.5 * smoothing_tol - smoothing_tol / Pi) - compressive_strength
#    = -sigma_I + 0.018169 - 1
# The second has the argument of ismoother equal to -0.018169.
# ismoother(-0.018169) = 0.5 * (-0.018169 + 0.1) - 0.1 * cos (0.5 * Pi * -0.018169 / 0.1) / Pi
#                     = 0.010372
# So the final yield function is
# yf = -sigma_I + 0.018169 + 0.010372 - 1 = -sigma_I + 0.028541 - 1
# However, because of the asymmetry in smoothing (the yield function is obtained
# by first smoothing -sigma_I-cs and -sigma_II-cs, and then by smoothing this
# result with -sigma_III-cs) the result is sigma_I > sigma_II = sigma_III


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-1E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform12
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_4/plane4_mu_0_2_pen.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane4_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = plane4_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = plane4_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/phase_field/test/tests/anisotropic_mobility/split.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  xmax = 15.0
  ymax = 15.0
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = CrossIC
      x1 = 0.0
      x2 = 30.0
      y1 = 0.0
      y2 = 30.0
    [../]
  [../]
  [./w]
  [../]
[]

[Kernels]
  [./cres]
    type = SplitCHParsed
    variable = c
    kappa_name = kappa_c
    w = w
    f_name = F
  [../]
  [./wres]
    type = SplitCHWResAniso
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[Materials]
  [./kappa]
    type = GenericConstantMaterial
    prop_names = 'kappa_c'
    prop_values = '2.0'
  [../]
  [./mob]
    type = ConstantAnisotropicMobility
    tensor = '0.1 0 0
              0   1 0
              0   0 0'
    M_name = M
  [../]
  [./free_energy]
    type = MathEBFreeEnergy
    f_name = F
    c = c
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31      lu      1'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 50
  nl_rel_tol = 1.0e-10

  dt = 10.0
  num_steps = 2
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

modules/richards/test/tests/jacobian_2/jnQ2P_bh1.i

# quick two phase with production borehole

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]


[UserObjects]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.3 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = Q2PRelPermPowerGas
    simm = 0.1
    n = 3
  [../]
  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pp]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 1
    [../]
  [../]
  [./sat]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Q2P]
  porepressure = pp
  saturation = sat
  water_density = DensityWater
  water_relperm = RelPermWater
  water_viscosity = 1
  gas_density = DensityGas
  gas_relperm = RelPermGas
  gas_viscosity = 1
  diffusivity = 0
[]


[DiracKernels]
  [./bh_water]
    type = Q2PBorehole
    bottom_pressure = -2
    point_file = jn30.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = sat
    unit_weight = '0 0 0'
    character = 1E12
    fluid_density = DensityWater
    fluid_relperm = RelPermWater
    other_var = pp
    var_is_porepressure = false
    fluid_viscosity = 0.5
  [../]
  [./bh_gas]
    type = Q2PBorehole
    bottom_pressure = -1.5
    point_file = jn30.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1E12
    fluid_density = DensityGas
    fluid_relperm = RelPermGas
    other_var = sat
    var_is_porepressure = true
    fluid_viscosity = 0.25
  [../]
[]



[Materials]
  [./rock]
    type = Q2PMaterial
    block = 0
    mat_porosity = 1E-12 # just so we get virtually no contributions from the time derivatives
    mat_permeability = '1.1E-20 0 0  0 2.2E-20 0  0 0 3.3E-20'
    gravity = '1 2 3'
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jnQ2P_bh1
  exodus = false
[]

modules/tensor_mechanics/test/tests/check_error/poissons_ratio.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.6
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_3comp.i

# Pressure pulse in 1D with 1 phase but 3 components (viscosity, relperm, etc are independent of mass-fractions) - transient
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 2E6
  [../]
  [./massfrac0]
    initial_condition = 0.1
  [../]
  [./massfrac1]
    initial_condition = 0.3
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    variable = pp
    gravity = '0 0 0'
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = massfrac0
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    variable = massfrac0
    gravity = '0 0 0'
    fluid_component = 1
  [../]
  [./mass2]
    type = PorousFlowMassTimeDerivative
    fluid_component = 2
    variable = massfrac1
  [../]
  [./flux2]
    type = PorousFlowAdvectiveFlux
    variable = massfrac1
    gravity = '0 0 0'
    fluid_component = 2
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0 massfrac1'
    number_fluid_phases = 1
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0 massfrac1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pp
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-7 1E-10 20 1E-10 1E-100'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[Postprocessors]
  [./p000]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p010]
    type = PointValue
    variable = pp
    point = '10 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p020]
    type = PointValue
    variable = pp
    point = '20 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p030]
    type = PointValue
    variable = pp
    point = '30 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p040]
    type = PointValue
    variable = pp
    point = '40 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p050]
    type = PointValue
    variable = pp
    point = '50 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p060]
    type = PointValue
    variable = pp
    point = '60 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p070]
    type = PointValue
    variable = pp
    point = '70 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p080]
    type = PointValue
    variable = pp
    point = '80 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p090]
    type = PointValue
    variable = pp
    point = '90 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p100]
    type = PointValue
    variable = pp
    point = '100 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./mf_0_010]
    type = PointValue
    variable = massfrac0
    point = '10 0 0'
    execute_on = 'timestep_end'
  [../]
  [./mf_1_010]
    type = PointValue
    variable = massfrac1
    point = '10 0 0'
    execute_on = 'timestep_end'
  [../]
[]

[Outputs]
  file_base = pressure_pulse_1d_3comp
  print_linear_residuals = true
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/large_deform3.i

# apply a number of "random" configurations and
# check that the algorithm returns to the yield surface
#
# must be careful here - we cannot put in arbitrary values of C_ijkl, otherwise the condition
# df/dsigma * C * flow_dirn < 0 for some stresses
# The important features that must be obeyed are:
# 0 = C_0222 = C_1222  (holds for transversely isotropic, for instance)
# C_0212 < C_0202 = C_1212 (holds for transversely isotropic)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  # the following are "random" deformations
  # each is O(1E-1) to provide large deformations
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = '(sin(0.1*t)+x)/1E1'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = '(cos(t)+x*y)/1E1'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 'sin(0.4321*t)*x*y*z/1E1'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./yield_fcn_at_zero]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'yield_fcn_at_zero'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E3
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.577350269
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.08748866
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 100
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    # the following is transversely isotropic, i think.
    fill_method = symmetric9
    C_ijkl = '3E9 1E9 3E9 3E9 3E9 6E9 1E9 1E9 9E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    max_NR_iterations = 100
    ep_plastic_tolerance = 1E-3
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1E4
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = large_deform3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/finite_strain_elastic/elastic_rotation_test.i

#
# Rotation Test
#
# This test is designed to compute stress based on uniaxial strain
# and then follow that stress as the mesh is rotated 90 degrees.
#
# The mesh is composed of one block with a single element.  The nodal
# displacements in the three directions are prescribed.  Poisson's
# ratio is 1/3, and Young's modulus is 1e6.
#
# This test is mentioned in
# K. Kamojjala, R. Brannon, A. Sadeghirad, and J. Guilkey, "Verification
#   tests in solid mechanics," Engineering with Computers, Vol. 31, 2015.
#   DOI: 10.1007/s00366-013-0342-x
#
[Mesh]
  type = FileMesh
  file = rotation_test.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./x_200]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '1e-6 1.0'
    value = 'if(t<=1.0, delta*t, (1.0+delta)*cos(pi/2*(t-t0)) - 1.0)'
  [../]
  [./y_200]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '1e-6 1.0'
    value = 'if(t<=1.0, 0.0, (1.0+delta)*sin(pi/2*(t-t0)))'
  [../]
  [./x_300]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '1e-6 1.0'
    value = 'if(t<=1.0, delta*t, (1.0+delta)*cos(pi/2.0*(t-t0)) - sin(pi/2.0*(t-t0)) - 1.0)'
  [../]
  [./y_300]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '1e-6 1.0'
    value = 'if(t<=1.0, 0.0, cos(pi/2.0*(t-t0)) + (1+delta)*sin(pi/2.0*(t-t0)) - 1.0)'
  [../]
  [./x_400]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '1e-6 1.0'
    value = 'if(t<=1.0, 0.0, -sin(pi/2.0*(t-t0)))'
  [../]
  [./y_400]
    type = ParsedFunction
    vars = 'delta t0'
    vals = '1e-6 1.0'
    value = 'if(t<=1.0, 0.0, cos(pi/2.0*(t-t0)) - 1.0)'
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = FINITE
        add_variables = true
        generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
      [../]
    [../]
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 100
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./x_200]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 200
    function = x_200
  [../]
  [./y_200]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 200
    function = y_200
  [../]
  [./x_300]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 300
    function = x_300
  [../]
  [./y_300]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 300
    function = y_300
  [../]
  [./x_400]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 400
    function = x_400
  [../]
  [./y_400]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 400
    function = y_400
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '100 200 300 400'
    value = 0.0
  [../]
[]

[Materials]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric9
    C_ijkl = '1.5e6 0.75e6 0.75e6 1.5e6 0.75e6 1.5e6 0.375e6 0.375e6 0.375e6'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-pc_type '
  petsc_options_value = lu
  nl_rel_tol = 1e-30
  nl_abs_tol = 1e-20
  l_max_its = 20
  start_time = 0.0
  dt = 0.01
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_4/plane4_template1_sm.i

[Mesh]
  file = plane4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/chemical_reactions/test/tests/aqueous_equilibrium/2species_with_density.i

# Simple equilibrium reaction example with fluid density and gravity included
# in calculation of the Darcy velocity. For details about reaction network,
# see documentation in 2species.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = 'a b'
    reactions = '2a = pa2     2,
                 a + b = pab -2'
    secondary_species = 'pa2 pab'
    pressure = pressure
    gravity = '-1 0 0'
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./a_conv]
    type = PrimaryConvection
    variable = a
    p = pressure
    gravity = '-1 0 0'
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./b_diff]
    type = PrimaryDiffusion
    variable = b
  [../]
  [./b_conv]
    type = PrimaryConvection
    variable = b
    p = pressure
    gravity = '-1 0 0'
  [../]
  [./p]
    type = DarcyFluxPressure
    variable = pressure
    gravity = '-1 0 0'
  [../]
[]

[BCs]
  [./a_left]
    type = DirichletBC
    variable = a
    preset = false
    boundary = left
    value = 1.0e-2
  [../]
  [./a_right]
    type = ChemicalOutFlowBC
    variable = a
    boundary = right
  [../]
  [./b_left]
    type = DirichletBC
    variable = b
    preset = false
    boundary = left
    value = 1.0e-2
  [../]
  [./b_right]
    type = ChemicalOutFlowBC
    variable = b
    boundary = right
  [../]
  [./pleft]
    type = DirichletBC
    variable = pressure
    preset = false
    value = 2
    boundary = left
  [../]
  [./pright]
    type = DirichletBC
    variable = pressure
    preset = false
    value = 1
    boundary = right
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity density'
    prop_values = '1e-4 1e-4 0.2 4'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-12
  start_time = 0.0
  end_time = 100
  dt = 10.0
[]

[Outputs]
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

modules/combined/test/tests/sliding_block/sliding/constraint/sm/frictional_04_penalty_sm.i

#  This is a benchmark test that checks constraint based frictional
#  contact using the penalty method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  A friction coefficient of 0.4 is used.  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    friction_coefficient = 0.4
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/solid_mechanics/test/tests/PLSH_smallstrain/PLSH_smallstrain.i

#This is a test of the piece-wise linear strain hardening model using the small strain formulation.
#The exact same problem was run in Abaqus with exactly the same result.

[Mesh]
  file = 1x1x1cube.e
#  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t*(0.0625)
  [../]
  [./hf]
    type = PiecewiseLinear
    x = '0  0.001 0.003 0.023'
    y = '50 52    54    56'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]

  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]

  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]

 []


[BCs]

  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

[]

[Materials]
  [./vermont]
    type = SolidModel
    formulation = Linear
    block = 1
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    constitutive_model = plsh
  [../]
  [./plsh]
    type = IsotropicPlasticity
    block = 1
    yield_stress = 50.0
    hardening_function = hf
  [../]

[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-19

  start_time = 0.0
  end_time = 0.075
#  num_steps = 20
  dt = 0.00125
[]



[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/auxkernels/execute_on_cyclic/execute_on_cyclic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./aux0]
  [../]
  [./aux1]
  [../]
[]

[AuxKernels]
  [./aux0]
    type = CoupledAux
    variable = aux0
    coupled = aux1
    execute_on = linear
  [../]
  [./aux1]
    type = CoupledAux
    variable = aux1
    coupled = aux0
    execute_on = timestep_end
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_2/brick2_template2.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick2_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_x26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_x
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./disp_y26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x7 disp_y7 disp_x26 disp_y26 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+7
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/tensor_mechanics/test/tests/isotropicSD_plasticity/isotropicSD.i

# UserObject IsotropicSD test, with constant hardening.
# Linear strain is applied in the x and y direction.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin =  -.5
  xmax = .5
  ymin = -.5
  ymax = .5
  zmin = -.5
  zmax = .5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./xdisp]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'right'
    function = '0.005*t'
  [../]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'top'
    function = '0.005*t'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./zfix]
    type = DirichletBC
    variable = disp_z
    boundary = 'back'
    value = 0
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sdev]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sdet]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./plastic_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xx
    index_i = 0
    index_j = 0
  [../]
  [./plastic_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xy
    index_i = 0
    index_j = 1
  [../]
  [./plastic_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xz
    index_i = 0
    index_j = 2
  [../]
  [./plastic_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_yy
    index_i = 1
    index_j = 1
  [../]
  [./plastic_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_yz
    index_i = 1
    index_j = 2
  [../]
  [./plastic_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = intnl
  [../]
  [./sdev]
    type = RankTwoScalarAux
    variable = sdev
    rank_two_tensor = stress
    scalar_type = VonMisesStress
  [../]
[]

[Postprocessors]
  [./sdev]
    type = PointValue
    point = '0 0 0'
    variable = sdev
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./p_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./p_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xy
  [../]
  [./p_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xz
  [../]
  [./p_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_yz
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./p_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./p_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_zz
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 300
  [../]
  [./IsotropicSD]
    type = TensorMechanicsPlasticIsotropicSD
    b = -0.2
    c = -0.779422863
    associative = true
    yield_strength = str
    yield_function_tolerance = 1e-5
    internal_constraint_tolerance = 1e-9
    use_custom_returnMap = false
    use_custom_cto = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '121e3 80e3'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1e-9
    plastic_models = IsotropicSD
    debug_fspb = crash
    tangent_operator = elastic
  [../]
[]


[Executioner]
  num_steps = 3
  dt = .5
  type = Transient

  nl_rel_tol = 1e-6
  nl_max_its = 10
  l_tol = 1e-4
  l_max_its = 50

  solve_type = PJFNK
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
[]


[Outputs]
  perf_graph = false
  csv = true
[]

[Preconditioning]
 [./smp]
   type = SMP
   full = true
 [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform_hard3.i

# Using CappedMohrCoulomb with tensile failure only
# checking for small deformation, with cubic hardening
# A single element is repeatedly stretched in z direction
# tensile_strength is set to 1Pa, tensile_strength_residual = 0.5Pa, and limit value = 1E-5
# This allows the hardening of the tensile strength to be observed

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '2E-6*z*t'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1.0
    value_residual = 0.5
    internal_0 = 0
    internal_limit = 1E-5
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.0
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1.0
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard3
  csv = true
[]

modules/phase_field/test/tests/flood_counter_aux_test/flood_aux_elemental.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  nz = 0

  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./bubble_map]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  active = 'diff forcing_1 forcing_2 forcing_3 forcing_4 dot'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing_1]
    type = GaussContForcing
    variable = u
    x_center = 1.0
    y_center = 1.0
    x_spread = 0.5
    y_spread = 0.5
    amplitude = 2.0
  [../]

  [./forcing_2]
    type = GaussContForcing
    variable = u
    x_center = 20.0
    y_center = 39.0
    x_spread = 0.5
    y_spread = 0.5
    amplitude = 2.0
  [../]

  [./forcing_3]
    type = GaussContForcing
    variable = u
    x_center = 39.0
    y_center = 20.0
    x_spread = 0.5
    y_spread = 0.5
    amplitude = 2.0
  [../]

  [./forcing_4]
    type = GaussContForcing
    variable = u
    x_center = 15.0
    y_center = 15.0
    x_spread = 0.5
    y_spread = 0.5
    amplitude = 2.0
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./mapper]
    type = FeatureFloodCountAux
    variable = bubble_map
    execute_on = timestep_end
    flood_counter = bubbles
  [../]
[]

[BCs]
  [./Periodic]
    [./x]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[Postprocessors]
  [./bubbles]
    type = FeatureFloodCount
    variable = u
    threshold = 0.3
    execute_on = timestep_end
  [../]
[]

[Executioner]
  active = ''

  type = Transient
  dt = 4.0
  num_steps = 5

#  [./Adaptivity]
#    refine_fraction = .40
#    coarsen_fraction = .02
#    max_h_level = 3
#    error_estimator = KellyErrorEstimator
#  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/contact_verification/hertz_cyl/half_symm_q4/hertz_cyl_half_1deg_template3.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = hertz_cyl_half_1deg.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./disp_ramp_vert]
    type = PiecewiseLinear
    x = '0. 1. 11.'
    y = '0. -0.0020 -0.0020'
  [../]
  [./disp_ramp_horz]
    type = PiecewiseLinear
    x = '0. 1. 11.'
    y = '0. 0.0 0.0014'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    extra_vector_tags = 'ref'
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 2
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./disp_x226]
    type = NodalVariableValue
    nodeid = 225
    variable = disp_x
  [../]
  [./disp_y226]
    type = NodalVariableValue
    nodeid = 225
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2'
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]
  [./top_y_disp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = disp_ramp_vert
  [../]
  [./top_x_disp]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = disp_ramp_horz
  [../]
[]

[Materials]
  [./stuff1_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e10
    poissons_ratio = 0.0
  [../]
  [./stuff1_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./stuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./stuff2_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff2_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./stuff2_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
  [./stuff3_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '3'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff3_strain]
    type = ComputeFiniteStrain
    block = '3'
  [../]
  [./stuff3_stress]
    type = ComputeFiniteStrainElasticStress
    block = '3'
  [../]
  [./stuff4_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '4'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff4_strain]
    type = ComputeFiniteStrain
    block = '4'
  [../]
  [./stuff4_stress]
    type = ComputeFiniteStrainElasticStress
    block = '4'
  [../]
  [./stuff5_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '5'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff5_strain]
    type = ComputeFiniteStrain
    block = '5'
  [../]
  [./stuff5_stress]
    type = ComputeFiniteStrainElasticStress
    block = '5'
  [../]
  [./stuff6_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '6'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff6_strain]
    type = ComputeFiniteStrain
    block = '6'
  [../]
  [./stuff6_stress]
    type = ComputeFiniteStrainElasticStress
    block = '6'
  [../]
  [./stuff7_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '7'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stuff7_strain]
    type = ComputeFiniteStrain
    block = '7'
  [../]
  [./stuff7_stress]
    type = ComputeFiniteStrainElasticStress
    block = '7'
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 200

  start_time = 0.0
  end_time = 2.0
  l_tol = 5e-4
  dt = 0.1
  dtmin = 0.1
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '3 4'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '3 4'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'x_disp y_disp cont_press'
    start_time = 0.9
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./chkfile2]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x226 disp_y226 top_react_x top_react_y'
    start_time = 0.9
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./interface]
    master = 2
    slave = 3
    disp_x = disp_x
    disp_y = disp_y
    model = coulomb
    friction_coefficient = 0.0
    system = constraint
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    master = '2'
    slave = '3'
  [../]
[]

modules/tensor_mechanics/test/tests/multi/three_surface11.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 0E-6m in y direction and 2E-6 in z direction.
# trial stress_yy = 0 and stress_zz = 2.0
#
# Then SimpleTester0 should activate and the algorithm will return to
# stress_zz=1
# internal0 should be 1.0

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '2.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface11
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/porous_flow/test/tests/dirackernels/bh_except12.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = does_not_exist
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/richards/test/tests/rogers_stallybrass_clements/rsc01.i

# RSC test with high-res time and spatial resolution
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 600
  ny = 1
  xmin = 0
  xmax = 10 # x is the depth variable, called zeta in RSC
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '3E-3 3E-2 0.05'
    x = '0 1 5'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater poil'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 10
    bulk_mod = 2E9
  [../]
  [./DensityOil]
    type = RichardsDensityConstBulk
    dens0 = 20
    bulk_mod = 2E9
  [../]
  [./SeffWater]
    type = RichardsSeff2waterRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
  [./SeffOil]
    type = RichardsSeff2gasRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
  [./RelPerm]
    type = RichardsRelPermMonomial
    simm = 0
    n = 1
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E-2
  [../]
[]


[Variables]
  [./pwater]
  [../]
  [./poil]
  [../]
[]

[ICs]
  [./water_init]
    type = ConstantIC
    variable = pwater
    value = 0
  [../]
  [./oil_init]
    type = ConstantIC
    variable = poil
    value = 15
  [../]
[]

[Kernels]
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstoil]
    type = RichardsMassChange
    variable = poil
  [../]
  [./richardsfoil]
    type = RichardsFlux
    variable = poil
  [../]
[]


[AuxVariables]
  [./SWater]
  [../]
  [./SOil]
  [../]
[]


[AuxKernels]
  [./Seff1VGwater_AuxK]
    type = RichardsSeffAux
    variable = SWater
    seff_UO = SeffWater
    pressure_vars = 'pwater poil'
  [../]
  [./Seff1VGoil_AuxK]
    type = RichardsSeffAux
    variable = SOil
    seff_UO = SeffOil
    pressure_vars = 'pwater poil'
  [../]
[]


[BCs]
# we are pumping water into a system that has virtually incompressible fluids, hence the pressures rise enormously.  this adversely affects convergence because of almost-overflows and precision-loss problems.  The fixed things help keep pressures low and so prevent these awful behaviours.   the movement of the saturation front is the same regardless of the fixed things.
  active = 'recharge fixedoil fixedwater'
  [./recharge]
    type = RichardsPiecewiseLinearSink
    variable = pwater
    boundary = 'left'
    pressures = '-1E10 1E10'
    bare_fluxes = '-1 -1'
    use_mobility = false
    use_relperm = false
  [../]
  [./fixedwater]
    type = DirichletBC
    variable = pwater
    boundary = 'right'
    value = 0
  [../]
  [./fixedoil]
    type = DirichletBC
    variable = poil
    boundary = 'right'
    value = 15
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.25
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityOil'
    relperm_UO = 'RelPerm RelPerm'
    SUPG_UO = 'SUPGstandard SUPGstandard'
    sat_UO = 'Saturation Saturation'
    seff_UO = 'SeffWater SeffOil'
    viscosity = '1E-3 2E-3'
    gravity = '0E-0 0 0'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]


[Outputs]
  file_base = rsc01
  interval = 100000
  execute_on = 'initial final'
  exodus = true
[]

test/tests/auxkernels/constant_scalar_aux/constant_scalar_aux.i

#
# Testing a solution that is second order in space and first order in time
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD9
[]

[AuxVariables]
  [./x]
    family = SCALAR
    order = FIRST
  [../]
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[ICs]
  [./ic_x]
    type = ScalarConstantIC
    variable = x
    value = 11
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    value = ((x*x)+(y*y))-(4*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]
[]

[AuxScalarKernels]
  [./const_x]
    type = ConstantScalarAux
    variable = x
    value = 11
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
    execute_on = 'initial timestep_end'
  [../]

  [./x]
    type = ScalarVariable
    variable = x
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.25

#  [./Adaptivity]
#    refine_fraction = 0.2
#    coarsen_fraction = 0.3
#    max_h_level = 4
#  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/brineco2_twophase.i

# Tests correct calculation of properties derivatives in PorousFlowFluidState
# for conditions that are appropriate for two phases

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[AuxVariables]
  [./xnacl]
    initial_condition = 0.05
  [../]
[]

[Variables]
  [./pgas]
  [../]
  [./zi]
  [../]
[]

[ICs]
  [./pgas]
    type = RandomIC
    min = 1e6
    max = 4e6
    variable = pgas
    seed = 1
  [../]
  [./z]
    type = RandomIC
    min = 0.2
    max = 0.8
    variable = zi
    seed = 2
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = zi
    fluid_component = 1
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    variable = pgas
    fluid_component = 0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    variable = zi
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e1
    pc_max = 1e4
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = zi
    temperature_unit = Celsius
    xnacl = xnacl
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[AuxVariables]
  [./sgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./sgas]
    type = PorousFlowPropertyAux
    property = saturation
    phase = 1
    variable = sgas
  [../]
[]

[Postprocessors]
  [./sgas_min]
    type = ElementExtremeValue
    variable = sgas
    value_type = min
  [../]
  [./sgas_max]
    type = ElementExtremeValue
    variable = sgas
    value_type = max
  [../]
[]

modules/solid_mechanics/test/tests/combined_creep_plasticity/combined_creep_plasticity_sm2.i

#
# This test is Example 3 from "A Consistent Formulation for the Integration
#   of Combined Plasticity and Creep" by P. Duxbury, et al., Int J Numerical
#   Methods in Engineering, Vol. 37, pp. 1277-1295, 1994.
#
# The problem is a one-dimensional bar which is loaded from yield to a value of twice
#   the initial yield stress and then unloaded to return to the original stress. The
#   bar must harden to the required yield stress during the load ramp, with no
#   further yielding during unloading. The initial yield stress (sigma_0) is prescribed
#   as 20 with a plastic strain hardening of 100. The mesh is a 1x1x1 cube with symmetry
#   boundary conditions on three planes to provide a uniaxial stress field.
#   The temperature is held constant at 1000.
#
#  In the PowerLawCreep model, the creep strain rate is defined by:
#
#   edot = A(sigma)**n * exp(-Q/(RT)) * t**m
#
#   The creep law specified in the paper, however, defines the creep strain rate as:
#
#   edot = Ao * mo * (sigma)**n * t**(mo-1)
#      with the creep parameters given by
#         Ao = 1e-7
#         mo = 0.5
#         n  = 5
#
#   thus, input parameters for the test were specified as:
#         A = Ao * mo = 1e-7 * 0.5 = 0.5e-7
#         m = mo-1 = -0.5
#         n = 5
#         Q = 0
#
#   The variation of load P with time is:
#       P = 20 + 20t      0 < t < 1
#       P = 40 - 40(t-1)  1 < t 1.5
#
#  The analytic solution for total strain during the loading period 0 < t < 1 is:
#
#    e_tot = (sigma_0 + 20*t)/E + 0.2*t + A * t**0.5  * sigma_0**n * [ 1 + (5/3)*t +
#               + 2*t**2 + (10/7)*t**3 + (5/9)**t**4 + (1/11)*t**5 }
#
#    and during the unloading period 1 < t < 1.5:
#
#    e_tot = (sigma_1 - 40*(t-1))/E + 0.2 + (4672/693) * A * sigma_0**n +
#               A * sigma_0**n * [ t**0.5 * ( 32 - (80/3)*t + 16*t**2 - (40/7)*t**3
#                                  + (10/9)*t**4 - (1/11)*t**5 ) - (11531/693) ]
#
#         where sigma_1 is the stress at time t = 1.
#
#  Assuming a Young's modulus (E) of 1000 and using the parameters defined above:
#
#    e_tot(1) = 2.39734
#    e_tot(1.5) = 3.16813
#
#
#   The numerically computed solution is:
#
#    e_tot(1) = 2.39826         (~0.04% error)
#    e_tot(1.5) = 3.15663       (~0.36% error)
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '  0   1   1.5'
    y = '-20 -40   -20'
  [../]

  [./dts]
    type = PiecewiseLinear
    x = '0        0.5    1.0    1.5'
    y = '0.015  0.015  0.005  0.005'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    variable = elastic_strain_yy
    tensor = elastic_strain
    index = 1
  [../]
  [./plastic_strain_yy]
    type = MaterialTensorAux
    variable = plastic_strain_yy
    tensor = plastic_strain
    index = 1
  [../]
  [./creep_strain_yy]
    type = MaterialTensorAux
    variable = creep_strain_yy
    tensor = creep_strain
    index = 1
  [../]
[]


[BCs]
  [./u_top_pull]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    factor = 1
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./creep_plas]
    type = SolidModel
    block = 0
    youngs_modulus = 1e3
    poissons_ratio = .3
    constitutive_model = combined
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    formulation = nonlinear3D
  [../]

  [./combined]
    type = CombinedCreepPlasticity
    block = 0
    submodels = 'creep plas'
    absolute_tolerance = 1e-5
    max_its = 50
  [../]

  [./creep]
    type = PowerLawCreepModel
    block = 0
    coefficient = 0.5e-7
    n_exponent = 5
    m_exponent = -0.5
    activation_energy = 0
  [../]
  [./plas]
    type = IsotropicPlasticity
    block = 0
    hardening_constant = 100
    yield_stress = 20
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 6
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-10
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Postprocessors]
  [./timestep]
    type = TimestepSize
  [../]
[]

[Outputs]
  file_base = combined_creep_plasticity_sm_out
  exodus = true
[]

test/tests/outputs/output_if_base_contains/dt_from_master_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0 0.5 0.5 0'
    input_files = dt_from_master_subsub.i
  [../]
[]

modules/porous_flow/test/tests/jacobian/fflux01_fully_saturated.i

# 1phase, 3components, constant viscosity, constant insitu permeability
# density with constant bulk, nonzero gravity
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
  [./massfrac1]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = -0.7+x+y
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 0.3
  [../]
  [./massfrac1]
    type = RandomIC
    variable = massfrac1
    min = 0
    max = 0.4
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowFullySaturatedDarcyFlow
    fluid_component = 0
    variable = pp
    gravity = '-1 -0.1 0'
  [../]
  [./flux1]
    type = PorousFlowFullySaturatedDarcyFlow
    fluid_component = 1
    variable = massfrac0
    gravity = '-1 -0.1 0'
  [../]
  [./flux2]
    type = PorousFlowFullySaturatedDarcyFlow
    fluid_component = 2
    variable = massfrac1
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0 massfrac1'
    number_fluid_phases = 1
    number_fluid_components = 3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0 massfrac1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
[]

[Preconditioning]
  active = check
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/tensor_mechanics/test/tests/torque_reaction/torque_reaction_tm.i

# Scalar torque reaction

# This test computes the sum of the torques acting on a ten element 2D bar mesh
# and is intended to replicate the classical wrench problem from statics.
# A displacement in the y along the right face is applied to the bar end to create
# a shear force along the bar end. The rotation origin default (the global origin)
# and the axis of rotation direction vector used to compute the torque reaction
# is set to (0, 0, 1) out of the plane.
# Torque is calculated for the two nodes on the left of the bar. For the bottom
# node on the right, the torque/ moment lever is the x coordinate value, and for
# the top node on the right the torque lever is the hypotenuse of the x and y
# coordinates.  The expected sum of the torque reaction is just over 37.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./right_shear_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = right
    function = '0.001*t'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./small_strain]
    type = ComputeSmallStrain
    block = 0
  [../]
  [./elastic_stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]
[]

[Executioner]
  type = Transient

  line_search = 'none'

  l_max_its = 30
  nl_max_its = 20
  nl_abs_tol = 1e-12
  nl_rel_tol = 1e-10
  l_tol = 1e-8

  start_time = 0.0
  dt = 0.5

  end_time = 1
  num_steps = 2
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./torque]
    type = TorqueReaction
    boundary = right
    reaction_force_variables = 'saved_x saved_y'
    direction_vector = '0. 0. 1.'
  [../]
[]

[Outputs]
  file_base = torque_reaction_tm_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_drucker_prager/small_deform3_inner_edge.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-1.7E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E5
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E5
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    mc_interpolation_scheme = inner_edge
    yield_function_tolerance = 1      # irrelevant here
    internal_constraint_tolerance = 1 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-8
    tip_smoother = 8
    smoothing_tol = 1E-7
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3_inner_edge
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/porous_flow/test/tests/mass_conservation/mass03.i

# checking that the mass postprocessor correctly calculates the mass
# 1phase, 1component, constant porosity, with a constant fluid source
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = -0.5
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./source]
    type = BodyForce
    variable = pp
    value = 0.1 # kg/m^3/s
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Postprocessors]
  [./porepressure]
    type = PointValue
    point = '0 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./total_mass]
    type = PorousFlowFluidMass
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres bjacobi 1E-12 1E-20 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 10
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = mass03
  csv = true
[]

python/chigger/tests/input/multiapps.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Problem]
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
[]

[MultiApps]
  [./sub]
    app_type = MooseTestApp
    type = TransientMultiApp
    input_files = sub.i
    output_in_position = true
    positions = '0 0 0
                 0 0 0.25
                 0 0 0.5
                 0 0 0.75
                 0 0 1'
  [../]
[]

modules/tensor_mechanics/test/tests/multi/three_surface10.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 1.5E-6m in y direction and 0.0E-6 in z direction.
# trial stress_yy = 1.5 and stress_zz = 0.0
#
# Then SimpleTester1 should activate and the algorithm will return to
# stress_yy=1
# internal1 should be 0.5

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1.5E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface10
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/porous_flow/test/tests/jacobian/chem04.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Precipitation with temperature
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.6
  [../]
  [./b]
    initial_condition = 0.4
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1.234
  [../]
  [./ini_sec_conc]
    initial_condition = 0.222
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1E-5
    stoichiometry = 2
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 2.2E-5
    stoichiometry = 3
  [../]
  [./temp]
    type = Diffusion
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b temp'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '2.5 3.8'
    reactions = '1.1 1.2'
    specific_reactive_surface_area = -44.4E-2
    kinetic_rate_constant = 0.678
    activation_energy = 4.4
    molar_volume = 3.3
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = 1.1
    eta_exponent = 1.2
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_sec_conc
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

test/tests/multiapps/grid-sequencing/coarse.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [rxn]
    type = Reaction
    variable = u
  []
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]


[Executioner]
  type = Transient
  num_steps = 2
  dt = 1

  solve_type = 'PJFNK'
  petsc_options = '-snes_monitor_solution'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/gravity_head_1/gh_fu_11.i

# unsaturated = false
# gravity = true
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGnone
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh_fu_11
  exodus = true
[]

modules/combined/test/tests/sliding_block/in_and_out/dirac/frictional_04_penalty.i

#  This is a benchmark test that checks Dirac based frictional
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2 and a friction coefficient
#  of 0. is used.  The gold file is run on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./constitutive]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  file_base = frictional_04_penalty_out
  interval = 10
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    friction_coefficient = 0.4
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/richards/test/tests/excav/ex02.i

###########################################
#                                         #
#   THIS EXAMPLE CONTAINS AN EXCAVATION   #
#                                         #
###########################################


# Easiest way of figuring out what's happening:
# Run this example, load into paraview, take
# a slice through (0,0,0) with normal (0,0,1),
# colour by pressure and play the animation.


# This mesh has an interior sideset called excav_bdy
[Mesh]
  type = FileMesh
  file = ex01_input.e
[]



# This is a boundary condition acting on excav_bdy
# All it does is to set the pressure to p_excav=0
# at places on excav_bdy wherever excav_fcn tells it to.
[BCs]
  [./excav_bdy]
    type = RichardsExcav
    boundary = excav_bdy
    p_excav = 0.0
    variable = pressure
    excav_geom_function = excav_fcn
  [../]
[]



[Functions]
# excav_fcn controls where to set pressure=p_excav
# You supply start and end positions and times and
# by a linear interpolation these define the position
# of the coal face at all times
  [./excav_fcn]
    type = RichardsExcavGeom
    start_posn = '0 -500 0'
    start_time = 0
    end_posn = '0 500 0'
    end_time = 3E7
    active_length = 1E4
  [../]

# mass_bal_fcn calculates the mass balance
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((mi-fout-mf)/2/(mi+mf))
    vars = 'mi mf fout'
    vals = 'mass_init mass_final flux_out'
  [../]

# initial pressure - unimportant in this example
  [./initial_pressure]
    type = ParsedFunction
    value = -10000*(z-100)
  [../]
[]




# following is needed by postprocessors, kernels, etc
# unimportant in this example
[GlobalParams]
  richardsVarNames_UO = PPNames
[]




# following does the calculation of relevant
# masses and mass-flux to the excavation
[Postprocessors]

# note that this is calculated at beginning of timestep
  [./mass_init]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

# note this is calculated at end of timestep
  [./mass_final]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

# this is what calculates the mass flux to the excavation
# it is calculating it for boundary=excav_bdy, and the
# excavation time-dependence is set through the excav_fcn
  [./flux_out]
    type = RichardsExcavFlow
    boundary = excav_bdy
    variable = pressure
    excav_geom_function = excav_fcn
  [../]

# mass_bal just outputs the result to screen
  [./mass_bal]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
  [../]
[]




######################################
#                                    #
#  THE FOLLOWING STUFF IS STANDARD   #
#                                    #
######################################


[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E+2
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = '1 2 3 4'
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 -10'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 3E7
  dt = 1E6
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = ex02
  exodus = true
[]

test/tests/test_harness/output_csv_and_exodus.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [./x_field]
    type = PointValue
    variable = u
    point = '0.5 0.5 0'
  [../]
  [./y_field]
    type = PointValue
    variable = u
    point = '0.25 0.25 0'
  [../]
  [./z_field]
    type = PointValue
    variable = u
    point = '0.75 0.75 0'
  [../]
[]
[Outputs]
  exodus = true
  csv = true
[]

modules/porous_flow/test/tests/infiltration_and_drainage/rsc02.i

# RSC test with low-res time and spatial resolution
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 200
  ny = 1
  xmin = 0
  xmax = 10 # x is the depth variable, called zeta in RSC
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '3E-2 5E-1 8E-1'
    x = '0 1 5'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pwater poil'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
[]

[Modules]
  [./FluidProperties]
    [./water]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 10
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
    [./oil]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 20
      thermal_expansion = 0
      viscosity = 2e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = poil
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./water]
    type = PorousFlowSingleComponentFluid
    fp = water
    phase = 0
    compute_enthalpy = false
    compute_internal_energy = false
  [../]
  [./oil]
    type = PorousFlowSingleComponentFluid
    fp = oil
    phase = 1
    compute_enthalpy = false
    compute_internal_energy = false
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm_oil]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.25
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
  [../]
[]

[Variables]
  [./pwater]
  [../]
  [./poil]
  [../]
[]

[ICs]
  [./water_init]
    type = ConstantIC
    variable = pwater
    value = 0
  [../]
  [./oil_init]
    type = ConstantIC
    variable = poil
    value = 15
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pwater
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = poil
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = poil
  [../]
[]


[AuxVariables]
  [./SWater]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./SOil]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]


[AuxKernels]
  [./SWater]
    type = MaterialStdVectorAux
    property = PorousFlow_saturation_qp
    index = 0
    variable = SWater
  [../]
  [./SOil]
    type = MaterialStdVectorAux
    property = PorousFlow_saturation_qp
    index = 1
    variable = SOil
  [../]
[]


[BCs]
# we are pumping water into a system that has virtually incompressible fluids, hence the pressures rise enormously.  this adversely affects convergence because of almost-overflows and precision-loss problems.  The fixed things help keep pressures low and so prevent these awful behaviours.   the movement of the saturation front is the same regardless of the fixed things.
  active = 'recharge fixedoil fixedwater'
  [./recharge]
    type = PorousFlowSink
    variable = pwater
    boundary = 'left'
    flux_function = -1.0
  [../]
  [./fixedwater]
    type = DirichletBC
    variable = pwater
    boundary = 'right'
    value = 0
  [../]
  [./fixedoil]
    type = DirichletBC
    variable = poil
    boundary = 'right'
    value = 15
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10      1E-10      10000'
  [../]
[]

[VectorPostprocessors]
  [./swater]
    type = LineValueSampler
    variable = SWater
    start_point = '0 0 0'
    end_point = '7 0 0'
    sort_by = x
    num_points = 21
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 5
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = rsc02
  [./along_line]
    type = CSV
    execute_vector_postprocessors_on = final
  [../]
  [./exodus]
    type = Exodus
    execute_on = 'initial final'
  [../]
[]

modules/tensor_mechanics/test/tests/stickyBC/push_down.i

# Testing StickyBC
#
# Push the top of an element downward until the bottom hits an (invisible) obstruction.
# 10 timesteps are used.  In each timestep disp_y is decreased by 0.1.  The
# StickyBC has a min_value of -0.49, so at timestep 5 this bound will be violated
# and the bottom boundary will be fixed forever after.
#
# This test also illustrates that StickyBC is only ever meant to be used in
# special situations:
# - if, after the simulation ends, the top is moved upward again, the StickyBC
#   will keep the bottom fixed.  Ie, the StickyBC is truly "sticky".
# - setting min_value = -0.5 in this test illustrates the "approximate" nature
#   of StickyBC, in that some nodes will be fixed at disp_y=-0.5, while others
#   will be fixed at disp_y=-0.6, due to the timestepping and roundoff errors
#   in MOOSE's solution.
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
  [../]
[]

[BCs]
  [./obstruction]
    type = StickyBC
    variable = disp_y
    boundary = bottom
    min_value = -0.49
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = -t
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./front]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0
  [../]
[]

[Materials]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1.0
    poissons_ratio = 0.2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Linear
  dt = 0.1
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

test/tests/bcs/periodic/auto_periodic_bc_non_generated.i

[Mesh]
  file = square2.e
  uniform_refine = 3
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./periodic_dist]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff forcing dot'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
    x_center = 0.1
    y_center = 0.3
    x_spread = 0.1
    y_spread = 0.1
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./periodic_dist]
    type = PeriodicDistanceAux
    variable = periodic_dist
    point = '0.2 0.3 0.0'
  [../]
[]

# This test verifies that autodirection works with an arbitrary
# regular orthogonal mesh
[BCs]
  [./Periodic]
    [./all]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 20
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_auto_non_generated
  exodus = true
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test3nnstt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3tt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.09
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.09
    normal_smoothing_method = nodal_normal_based
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test3nnstt_out
  exodus = true
[]

[NodalNormals]
  boundary = 11
  corner_boundary = 20
[]

test/tests/transfers/multiapp_mesh_function_transfer/fromsub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [transferred_u]
  []
  [elemental_transferred_u]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [sub]
    positions = '.099 .099 0 .599 .599 0 0.599 0.099 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = fromsub_sub.i
  []
[]

[Transfers]
  [from_sub]
    source_variable = 'sub_u sub_u'
    direction = from_multiapp
    variable = 'transferred_u elemental_transferred_u'
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
  []
[]

modules/phase_field/test/tests/DeformedGrain/DeformedGrain.i

# This example tests the implementation of PolycrstalStoredEnergy kernels that assigns excess stored energy to grains with dislocation density
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 32
  ny = 32
  nz = 0
  xmin = 0
  xmax = 64
  ymin = 0
  ymax = 64
[]

[GlobalParams]
  block = 0
  op_num = 8
  deformed_grain_num = 16
  var_name_base = gr
  grain_num = 18
  grain_tracker = grain_tracker
  time_scale = 1e-2
  length_scale = 1e-8
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 81
    coloring_algorithm = bt
  [../]
  [./grain_tracker]
    type = GrainTracker
    threshold = 0.2
    connecting_threshold = 0.08
    compute_var_to_feature_map = true
    flood_entity_type = elemental
    execute_on = ' initial timestep_begin'
    outputs = none
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
  [./PolycrystalStoredEnergy]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./deformed]
    type = DeformedGrainMaterial
    int_width = 4.0
    outputs = exodus
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  nl_max_its = 15
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = -pc_type
  petsc_options_value = asm
  l_max_its = 15
  l_tol = 1.0e-3
  nl_rel_tol = 1.0e-8
  start_time = 0.0
  num_steps = 1
  nl_abs_tol = 1e-8
  dt = 0.20
[]

[Outputs]
  exodus = true
  interval = 1
  show = bnds
  perf_graph = true
[]

modules/richards/test/tests/gravity_head_1/gh21.i

# investigating validity of immobile saturation
# 5 elements, with SUPG

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 5
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1 10 100 1000 10000'
    x = '0 10 100 1000 10000'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.3
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E-6
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -1.0
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E0
  end_time = 1E5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = gh21
  execute_on = 'timestep_end final'
  interval = 10000
  exodus = true
[]

test/tests/outputs/dofmap/simple_transient.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  marker = marker
  initial_steps = 1
  initial_marker = marker
  [./Markers]
    [./marker]
      type = UniformMarker
      mark = REFINE
    [../]
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  [./dofmap]
    type = DOFMap
    execute_on = timestep_begin
  [../]
[]

test/tests/dampers/min_damping/min_nodal_damping.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./u_dt]
    type = TimeDerivative
    variable = u
  [../]
  [./u_source]
    type = BodyForce
    variable = u
    value = 1
  [../]
[]

[BCs]
  [./u_left]
    type = DirichletBC
    boundary = left
    variable = u
    value = 0.0
  [../]
[]

[Dampers]
  [./limit]
    type = BoundingValueNodalDamper
    variable = u
    max_value = 1.5
    min_value = -1.5
    min_damping = 0.001
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
[]

[Postprocessors]
  [./u_avg]
    type = ElementAverageValue
    variable = u
  [../]
  [./dt]
    type = TimestepSize
  [../]
[]

test/tests/mesh_modifiers/lower_d_block/lower_d.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[MeshModifiers]
  [./lower]
    type = LowerDBlockFromSideset
    new_block_id = 10
    sidesets = '0 0 1 2 3'
  [../]
[]

[Variables]
  [./u]
    block = 0
  [../]
  [./v]
    block = 10
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
    block = 0
  [../]
  [./srcv]
    type = BodyForce
    block = 10
    variable = v
    function = 1
  [../]
  [./time_v]
    type = TimeDerivative
    block = 10
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/warrick_lomen_islas/wli01.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1000
  ny = 1
  xmin = -10000
  xmax = 0
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 10
    bulk_mod = 2E9
  [../]
  [./SeffBW]
    type = RichardsSeff1BWsmall
    Sn = 0.0
    Ss = 1.0
    C = 1.5
    las = 2
  [../]
  [./RelPermBW]
    type = RichardsRelPermBW
    Sn = 0.0
    Ss = 1.0
    Kn = 0
    Ks = 1
    C = 1.5
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E2
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -1E-4
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffBW
    pressure_vars = pressure
  [../]
[]


[BCs]
  active = 'base'
  [./base]
    type = DirichletBC
    variable = pressure
    boundary = 'left'
    value = -1E-4
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.25
    mat_permeability = '1 0 0  0 1 0  0 0 1'
    density_UO = DensityConstBulk
    relperm_UO = RelPermBW
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffBW
    viscosity = 4
    gravity = '-0.1 0 0'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''
    petsc_options_iname = '-ksp_type -pc_type -ksp_rtol -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 1E-10 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 1000
  dt = 1
[]


[Outputs]
  file_base = wli01
  interval = 10000
  execute_on = 'timestep_end final'
  exodus = true
[]

modules/porous_flow/test/tests/basic_advection/except1.i

# phase number is too high in PorousFlowBasicAdvection
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./P]
  [../]
[]

[ICs]
  [./P]
    type = FunctionIC
    variable = P
    function = '2*(1-x)'
  [../]
  [./u]
    type = FunctionIC
    variable = u
    function = 'if(x<0.1,1,0)'
  [../]
[]

[Kernels]
  [./u_dot]
    type = TimeDerivative
    variable = u
  [../]
  [./u_advection]
    type = PorousFlowBasicAdvection
    variable = u
    phase = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = ''
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 4
      thermal_expansion = 0
      viscosity = 150.0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = P
    capillary_pressure = pc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '5 0 0 0 5 0 0 0 5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  [../]
  [./darcy_velocity]
    type = PorousFlowDarcyVelocityMaterial
    gravity = '0.25 0 0'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 1
    variable = u
  [../]
  [./right]
    type = DirichletBC
    boundary = right
    value = 0
    variable = u
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -snes_rtol'
    petsc_options_value = ' lu       1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 5
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
[]

test/tests/multiapps/move/multilevel_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '1 1 0'
    input_files = multilevel_sub.i
    output_in_position = true
    move_time = 0.05
    move_positions = '2 2 0'
    move_apps = 0
  [../]
[]

test/tests/transfers/multiapp_postprocessor_to_scalar/sub2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Postprocessors]
  [./point_value]
    type = PointValue
    variable = u
    point = '1 1 0'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/crystal_plasticity/crysp_user_object.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
  nx = 2
  ny = 2
[]

[Variables]
  [./disp_x]
    block = 0
  [../]
  [./disp_y]
    block = 0
  [../]
[]

[GlobalParams]
  volumetric_locking_correction=true
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./rotout]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./gss1]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[UserObjects]
  [./prop_read]
    type = ElementPropertyReadFile
    prop_file_name = 'euler_ang_file.txt'
    # Enter file data as prop#1, prop#2, .., prop#nprop
    nprop = 3
    read_type = element
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
  [./e_yy]
    type = RankTwoAux
    variable = e_yy
    rank_two_tensor = lage
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_yy]
    type = RankTwoAux
    variable = fp_yy
    rank_two_tensor = fp
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss1
    property = gss
    index = 0
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCrystalPlasticity
    block = 0
    gtol = 1e-2
    slip_sys_file_name = input_slip_sys.txt
    nss = 12
    num_slip_sys_flowrate_props = 2 #Number of properties in a slip system
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    hprops = '1.0 541.5 60.8 109.8 2.5'
    gprops = '1 4 60.8 5 8 60.8 9 12 60.8'
    tan_mod_type = exact
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
    read_prop_user_object = prop_read
  [../]
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_yy]
    type = ElementAverageValue
    variable = e_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_yy]
    type = ElementAverageValue
    variable = fp_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./gss1]
    type = ElementAverageValue
    variable = gss1
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 0.01
  dtmax = 10.0
  dtmin = 0.01

  num_steps = 10
[]

[Outputs]
  file_base = crysp_user_object_out
  exodus = true
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
    use_displaced_mesh = true
  [../]
[]

modules/tensor_mechanics/test/tests/temperature_dependent_hardening/temp_dep_hardening.i

#
# This is a test of the piece-wise linear strain hardening model using the
# small strain formulation.  This test exercises the temperature-dependent
# hardening curve capability.
#
# Test procedure:
# 1. The element is pulled to and then beyond the yield stress for a given
# temperature.
# 2. The displacement is then constant while the temperature increases and
# the yield stress decreases.  This results in a lower stress with more
# plastic strain.
# 3. The temperature decreases beyond its original value giving a higher
# yield stress.  The displacement increases, causing increases stress to
# the new yield stress.
# 4. The temperature and yield stress are constant with increasing
# displacement giving a constant stress and more plastic strain.
#
# Plotting total_strain_yy on the x axis and stress_yy on the y axis shows
# the stress history in a clear way.
#
#  s |
#  t |            *****
#  r |           *
#  e |   *****  *
#  s |  *    * *
#  s | *     *
#    |*
#    +------------------
#           total strain
#
# The exact same problem was run in Abaqus with exactly the same result.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 500.0
  [../]
[]

[AuxKernels]
  [./temp_aux]
    type = FunctionAux
    variable = temp
    function = temp_hist
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1     2    4    5    6'
    y = '0 0.025 0.05 0.05 0.06 0.085'
  [../]
  [./hf1]
    type = PiecewiseLinear
    x = '0.0  0.01 0.02 0.03 0.1'
    y = '5000 5030 5060 5090 5300'
  [../]
  [./hf2]
    type = PiecewiseLinear
    x = '0.0  0.01 0.02 0.03 0.1'
    y = '4000 4020 4040 4060 4200'
  [../]
  [./temp_hist]
    type = PiecewiseLinear
    x = '0   1   2   3   4'
    y = '500 500 500 600 400'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_yy strain_yy plastic_strain_xx plastic_strain_yy plastic_strain_zz'
  [../]
[]


[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 3
    function = top_pull
  [../]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 0
    value = 0.0
  [../]
[]

[Postprocessors]
  [./stress_yy_el]
    type = ElementalVariableValue
    variable = stress_yy
    elementid = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.3
  [../]
  [./temp_dep_hardening]
    type = TemperatureDependentHardeningStressUpdate
    hardening_functions = 'hf1 hf2'
    temperatures = '300.0 800.0'
    relative_tolerance = 1e-25
    absolute_tolerance = 1e-5
    temperature = temp
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    tangent_operator = elastic
    inelastic_models = 'temp_dep_hardening'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 6
  dt = 0.1
[]

[Outputs]
  [./out]
    type = Exodus
  [../]
[]

modules/phase_field/test/tests/SplitCH/forward_split_math_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  xmax = 25.0
  ymax = 25.0
  elem_type = QUAD
[]

[Variables]
  [./c]
  [../]
  [./w]
  [../]
[]

[ICs]
  [./c_IC]
    type = CrossIC
    variable = c
    x1 = 0
    x2 = 25
    y1 = 0
    y2 = 25
  [../]
[]

[Kernels]
  [./cdot]
    type = TimeDerivative
    variable = c
  [../]
  [./grad_w]
    type = MatDiffusion
    variable = c
    v = w
    diffusivity = 1.0
  [../]
  [./grad_c]
    type = MatDiffusion
    variable = w
    v = c
    diffusivity = 2.0
  [../]
  [./w2]
    type = CoupledMaterialDerivative
    variable = w
    v = c
    f_name = F
  [../]
  [./w3]
    type = CoefReaction
    variable = w
    coefficient = -1.0
  [../]
[]

[AuxVariables]
  [./local_energy]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./local_energy]
    type = TotalFreeEnergy
    variable = local_energy
    f_name = F
    kappa_names = kappa_c
    interfacial_vars = c
  [../]
[]

[Materials]
  [./kappa_c]
    type = GenericConstantMaterial
    prop_names = kappa_c
    prop_values = 2.0
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    args = c
    function = '(1 - c)^2 * (1 + c)^2'
    f_name = F
  [../]
[]

[Postprocessors]
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    variable = local_energy
  [../]
  [./total_c]
    type = ElementIntegralVariablePostprocessor
    variable = c
    execute_on = 'initial TIMESTEP_END'
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 10
  nl_rel_tol = 1.0e-10

  start_time = 0.0
  num_steps = 5
  dt = 0.7
[]

[Outputs]
  exodus = true
[]

test/tests/misc/displaced_mesh_coupling/ad.i

[GlobalParams]
  displacements = 'u'
[]

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./u]
    type = ADDiffusion
    use_displaced_mesh = true
    variable = u
  [../]
  [./v]
    type = ADDiffusion
    use_displaced_mesh = false
    variable = v
  [../]
[]

[BCs]
  [./no_x]
    type = ADNeumannBC
    variable = u
    boundary = left
    value = 1.0e-3
    use_displaced_mesh = true
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./lright]
    type = DirichletBC
    variable = v
    boundary = right
    value = 1
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/mortar_tm/2d/frictionless_second/small.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'small'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 'plank block'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/richards/test/tests/sinks/s_fu_04.i

# apply a total flux (in kg/s) to two boundaries
# and check that it removes the correct amount of fluid
# fully-upwind sink
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 3
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 4
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
  viscosity = 1E-3
  gravity = '-1 0 0'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.5
    al = 1 # same deal with PETSc constant state
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
  [../]
[]

[ICs]
  [./pressure]
    type = ConstantIC
    variable = pressure
    value = 2
  [../]
[]

[Postprocessors]
  [./area_left]
    type = AreaPostprocessor
    boundary = left
    execute_on = initial
  [../]
  [./area_right]
    type = AreaPostprocessor
    boundary = right
    execute_on = initial
  [../]
  [./mass_fin]
    type = RichardsMass
    variable = pressure
    execute_on = 'initial timestep_end'
  [../]
  [./p0]
    type = PointValue
    point = '0 0 0'
    variable = pressure
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = left
    pressures = '0'
    bare_fluxes = '0.1'
    variable = pressure
    use_mobility = false
    use_relperm = false
    area_pp = area_left
    fully_upwind = true
  [../]
  [./right_flux]
    type = RichardsPiecewiseLinearSink
    boundary = right
    pressures = '0'
    bare_fluxes = '0.1'
    variable = pressure
    use_mobility = false
    use_relperm = false
    area_pp = area_right
    fully_upwind = true
  [../]
[]

[Kernels]
  active = 'richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 13
[]

[Outputs]
  file_base = s_fu_04
  csv = true
[]

modules/tensor_mechanics/test/tests/tensile/planar2.i

# checking for small deformation
# A single element is stretched by 1E-6m in all directions, with lame mu = 1E6, so trial stress is 2Pa in principal directions
# tensile_strength is set to 1Pa
# Then the final stress should return to the all principal stresses being 1.0 (up to tolerance), and internal parameter = (0.5+0.5+0.5)E-6 = 1.5E-6
# Using 'planar' Tensile plasticity

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
    outputs = console
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./hard]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tens]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = hard
    shift = 1E-6
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    plastic_models = tens
    debug_fspb = crash
    debug_jac_at_stress = '1 2 3 2 -4 -5 3 -5 10'
    debug_jac_at_pm = '0.1 0.2 0.3'
    debug_jac_at_intnl = 1E-6
    debug_stress_change = 1E-6
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar2
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/transfers/multiapp_postprocessor_transfer/from_one_sub_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_sub]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./sub_average]
    type = Receiver
  [../]
  [./sub_sum]
    type = Receiver
  [../]
  [./sub_maximum]
    type = Receiver
  [../]
  [./sub_minimum]
    type = Receiver
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    positions = '0.2 0.2 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = 'sub0.i'
  [../]
[]

[Transfers]
  [./pp_transfer_ave]
    type = MultiAppPostprocessorTransfer
    reduction_type = average
    direction = from_multiapp
    multi_app = sub
    from_postprocessor = average
    to_postprocessor = sub_average
  [../]
  [./pp_transfer_sum]
    type = MultiAppPostprocessorTransfer
    reduction_type = sum
    direction = from_multiapp
    multi_app = sub
    from_postprocessor = average
    to_postprocessor = sub_sum
  [../]
  [./pp_transfer_min]
    type = MultiAppPostprocessorTransfer
    reduction_type = minimum
    direction = from_multiapp
    multi_app = sub
    from_postprocessor = average
    to_postprocessor = sub_minimum
  [../]
  [./pp_transfer_max]
    type = MultiAppPostprocessorTransfer
    reduction_type = maximum
    direction = from_multiapp
    multi_app = sub
    from_postprocessor = average
    to_postprocessor = sub_maximum
  [../]
[]

modules/phase_field/test/tests/grain_tracker_test/grain_tracker_advanced_op.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  nz = 0
  xmax = 1000
  ymax = 1000
  zmax = 0
  elem_type = QUAD4

  parallel_type = replicated # Periodic BCs
[]

[GlobalParams]
  op_num = 8
  var_name_base = gr
  order = CONSTANT
  family = MONOMIAL
[]

[Variables]
  [./PolycrystalVariables]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 1
    grain_num = 35
    coloring_algorithm = bt
    output_adjacency_matrix = true
  [../]
  [./grain_tracker]
    type = GrainTracker
    threshold = 0.5
    connecting_threshold = 0.5
    compute_halo_maps = true # For displaying HALO fields
    remap_grains = false
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
  [../]
  [./var_indices]
  [../]

  [./halos]
  [../]

  [./halo0]
  [../]

  [./halo1]
  [../]

  [./halo2]
  [../]

  [./halo3]
  [../]

  [./halo4]
  [../]

  [./halo5]
  [../]

  [./halo6]
  [../]

  [./halo7]
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
  [../]
  [./halo0]
    type = FeatureFloodCountAux
    variable = halo0
    map_index = 0
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo1]
    type = FeatureFloodCountAux
    variable = halo1
    map_index = 1
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo2]
    type = FeatureFloodCountAux
    variable = halo2
    map_index = 2
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo3]
    type = FeatureFloodCountAux
    variable = halo3
    map_index = 3
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo4]
    type = FeatureFloodCountAux
    variable = halo4
    map_index = 4
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo5]
    type = FeatureFloodCountAux
    variable = halo5
    map_index = 5
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo6]
    type = FeatureFloodCountAux
    variable = halo6
    map_index = 6
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo7]
    type = FeatureFloodCountAux
    variable = halo7
    map_index = 7
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./CuGrGr]
    type = GBEvolution
    T = 500 # K
    wGB = 100 # nm

    GBmob0 = 2.5e-6
    Q = 0.23
    GBenergy = 0.708
    molar_volume = 7.11e-6
  [../]
[]

[Postprocessors]
  [./DOFs]
    type = NumDOFs
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 0
  dt = 100.0
[]

[Outputs]
  csv = true
  perf_graph = true
[]

[Problem]
  solve = false
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_1/brick1_template1.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick1_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_x
  [../]
  [./disp_x13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_y
  [../]
  [./disp_y13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_x8 disp_x13 disp_x16 disp_y5 disp_y8 disp_y13 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/random2.i

# Using CappedMohrCoulomb with compressive failure only
# Plasticity models:
# Compressive strength = 1 MPa
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1234
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1234
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./tot_iters]
    type = ElementIntegralMaterialProperty
    mat_prop = plastic_NR_iterations
    outputs = console
  [../]
  [./raw_f0]
    type = ElementExtremeValue
    variable = f0
    outputs = console
  [../]
  [./raw_f1]
    type = ElementExtremeValue
    variable = f1
    outputs = console
  [../]
  [./raw_f2]
    type = ElementExtremeValue
    variable = f2
    outputs = console
  [../]
  [./iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./f0]
    type = FunctionValuePostprocessor
    function = should_be_zero0_fcn
  [../]
  [./f1]
    type = FunctionValuePostprocessor
    function = should_be_zero1_fcn
  [../]
  [./f2]
    type = FunctionValuePostprocessor
    function = should_be_zero2_fcn
  [../]
[]

[Functions]
  [./should_be_zero0_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f0'
  [../]
  [./should_be_zero1_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f1'
  [../]
  [./should_be_zero2_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f2'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E12
  [../]
  [./cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E6
    value_residual = 0
    internal_limit = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E12
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 1.3E9'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 1E5
    max_NR_iterations = 100
    yield_function_tol = 1.0E-1
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random2
  csv = true
[]

test/tests/adaptivity/max_h_level/max_h_level.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 1
  solve_type = PJFNK
[]

[Adaptivity]
  steps = 1
  marker = box
  max_h_level = 2
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = do_nothing
      type = BoxMarker
    [../]
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = Exodus
    execute_scalars_on = none
  [../]
[]

modules/tensor_mechanics/test/tests/orthotropic_plasticity/orthotropic.i

# UserObject Orthotropic test, with constant hardening.
# Linear strain is applied in the x and y direction.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin =  -.5
  xmax = .5
  ymin = -.5
  ymax = .5
  zmin = -.5
  zmax = .5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_xz'
  [../]
[]

[BCs]
  [./xdisp]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'right'
    function = '0.005*t'
  [../]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'top'
    function = '0.005*t'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    #boundary = 'bottom top'
    boundary = 'bottom'
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./zfix]
    type = DirichletBC
    variable = disp_z
    #boundary = 'front back'
    boundary = 'back'
    value = 0
  [../]
[]

[AuxVariables]
  [./plastic_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sdev]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sdet]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./plastic_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xx
    index_i = 0
    index_j = 0
  [../]
  [./plastic_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xy
    index_i = 0
    index_j = 1
  [../]
  [./plastic_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xz
    index_i = 0
    index_j = 2
  [../]
  [./plastic_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_yy
    index_i = 1
    index_j = 1
  [../]
  [./plastic_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_yz
    index_i = 1
    index_j = 2
  [../]
  [./plastic_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = intnl
  [../]
  [./sdev]
    type = RankTwoScalarAux
    variable = sdev
    rank_two_tensor = stress
    scalar_type = VonMisesStress
  [../]
[]

[Postprocessors]
  [./sdev]
    type = PointValue
    point = '0 0 0'
    variable = sdev
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./p_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./p_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xy
  [../]
  [./p_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xz
  [../]
  [./p_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_yz
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./p_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./p_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_zz
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 300
  [../]
  [./Orthotropic]
    type = TensorMechanicsPlasticOrthotropic
    b = -0.2
    c1 = '1 1 1 1 1 1'
    c2 = '1 1 1 1 1 1'
    associative = true
    yield_strength = str
    yield_function_tolerance = 1e-5
    internal_constraint_tolerance = 1e-9
    use_custom_returnMap = false
    use_custom_cto = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '121e3 80e3'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1e-9
    plastic_models = Orthotropic
    debug_fspb = crash
    tangent_operator = elastic
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  num_steps = 3
  dt = .5
  type = Transient

  nl_rel_tol = 1e-6
  nl_max_its = 10
  l_tol = 1e-4
  l_max_its = 50

  solve_type = PJFNK
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
[]


[Outputs]
  perf_graph = false
  csv = true
[]

test/tests/controls/time_periods/transfers/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_master_app]
    order = FIRST
    family = SCALAR
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.01
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Postprocessors]
  [./from_master]
    type = ScalarVariable
    variable = from_master_app
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
  hide = from_master_app
[]

modules/tensor_mechanics/test/tests/global_strain/global_strain.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 10
    xmin = -0.5
    xmax = 0.5
    ymin = -0.5
    ymax = 0.5
  []
  [cnode]
    type = ExtraNodesetGenerator
    coord = '0 0'
    new_boundary = 100
    input = generated_mesh
  []
[]

[Variables]
  [./u_x]
  [../]
  [./u_y]
  [../]
  [./global_strain]
    order = THIRD
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = GlobalDisplacementAux
    variable = disp_x
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 0
  [../]
  [./disp_y]
    type = GlobalDisplacementAux
    variable = disp_y
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 1
  [../]
[]

[GlobalParams]
  displacements = 'u_x u_y'
  block = 0
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[ScalarKernels]
  [./global_strain]
    type = GlobalStrain
    variable = global_strain
    global_strain_uo = global_strain_uo
  [../]
[]

[BCs]
  [./Periodic]
    [./left-right]
      auto_direction = 'x y'
      variable = 'u_x u_y'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = u_x
    value = 0
  [../]
  [./centerfix_y]
    type = DirichletBC
    boundary = 100
    variable = u_y
    value = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '1 1'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    global_strain = global_strain
  [../]
  [./global_strain]
    type = ComputeGlobalStrain
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[UserObjects]
  [./global_strain_uo]
    type = GlobalStrainUserObject
    applied_stress_tensor = '0.1 0.2 0 0 0 -0.2'
    execute_on = 'Initial Linear Nonlinear'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  line_search = basic

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  l_max_its = 30
  nl_max_its = 12

  l_tol = 1.0e-4

  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 2
[]

[Outputs]
exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_1/plane1_mu_0_2_pen_sm.i

[Mesh]
  file = plane1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_x = diag_saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = plane1_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = plane1_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/porous_flow/examples/co2_intercomparison/1Dradial/1Dradial.i

# Intercomparison problem 3: Radial flow from an injection well
#
# From Pruess et al, Code intercomparison builds confidence in
# numerical simulation models for geologic disposal of CO2, Energy 29 (2004)
#
# A variation with zero salinity can be run by changing the initial condition
# of the AuxVariable xnacl

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 500
  xmax = 10000
  bias_x = 1.01
[]

[Problem]
  type = FEProblem
  coord_type = 'RZ'
  rz_coord_axis = Y
[]

[GlobalParams]
  PorousFlowDictator = 'dictator'
  gravity = '0 0 0'
[]

[AuxVariables]
  [pressure_liquid]
    order = CONSTANT
    family = MONOMIAL
  []
  [saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  []
  [x1]
    order = CONSTANT
    family = MONOMIAL
  []
  [y0]
    order = CONSTANT
    family = MONOMIAL
  []
  [xnacl]
    initial_condition = 0.15
  []
[]

[AuxKernels]
  [pressure_liquid]
    type = PorousFlowPropertyAux
    variable = pressure_liquid
    property = pressure
    phase = 0
    execute_on = 'timestep_end'
  []
  [saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = 'timestep_end'
  []
  [x1]
    type = PorousFlowPropertyAux
    variable = x1
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = 'timestep_end'
  []
  [y0]
    type = PorousFlowPropertyAux
    variable = y0
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = 'timestep_end'
  []
[]

[Variables]
  [pgas]
    initial_condition = 12e6
  []
  [zi]
    initial_condition = 0
    scaling = 1e4
  []
[]

[Kernels]
  [mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pgas
  []
  [flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pgas
  []
  [mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = zi
  []
  [flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = zi
  []
[]

[UserObjects]
  [dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi'
    number_fluid_phases = 2
    number_fluid_components = 3
  []
  [pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 5.099e-5
    m = 0.457
    sat_lr = 0.0
    pc_max = 1e7
  []
  [fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  []
[]

[Modules]
  [FluidProperties]
    [co2sw]
      type = CO2FluidProperties
    []
    [co2]
      type = TabulatedFluidProperties
      fp = co2sw
    []
    [water]
      type = Water97FluidProperties
    []
    [watertab]
      type = TabulatedFluidProperties
      fp = water
      temperature_min = 273.15
      temperature_max = 573.15
      fluid_property_file = water_fluid_properties.csv
      save_file = false
    []
    [brine]
      type = BrineFluidProperties
      water_fp = watertab
    []
  []
[]

[Materials]
  [temperature]
    type = PorousFlowTemperature
    temperature = '45'
  []
  [brineco2]
    type = PorousFlowFluidState
    gas_porepressure = 'pgas'
    z = 'zi'
    temperature_unit = Celsius
    xnacl = 'xnacl'
    capillary_pressure = pc
    fluid_state = fs
  []
  [porosity]
    type = PorousFlowPorosityConst
    porosity = '0.12'
  []
  [permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-13 0 0 0 1e-13 0 0 0 1e-13'
  []
  [relperm_water]
    type = PorousFlowRelativePermeabilityVG
    m = 0.457
    phase = 0
    s_res = 0.3
    sum_s_res = 0.35
  []
  [relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
    s_res = 0.05
    sum_s_res = 0.35
  []
[]

[BCs]
  [rightwater]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'right'
    variable = pgas
    use_mobility = true
    PorousFlowDictator = dictator
    fluid_phase = 0
    multipliers = '0 1e9'
    PT_shift = '12e6'
    pt_vals = '0 1e9'
    mass_fraction_component = 0
    use_relperm = true
  []
  [rightco2]
    type = PorousFlowPiecewiseLinearSink
    variable = zi
    boundary = 'right'
    use_mobility = true
    PorousFlowDictator = dictator
    fluid_phase = 1
    multipliers = '0 1e9'
    PT_shift = '12e6'
    pt_vals = '0 1e9'
    mass_fraction_component = 1
    use_relperm = true
  []
[]

[DiracKernels]
  [source]
    type = PorousFlowSquarePulsePointSource
    point = '0 0 0'
    mass_flux = 1
    variable = zi
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type'
    petsc_options_value = 'gmres bjacobi lu NONZERO'
  []
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 8.64e8
  nl_max_its = 25
  l_max_its = 100
  dtmax = 5e6
  [TimeStepper]
    type = IterationAdaptiveDT
    dt = 100
  []
[]

[VectorPostprocessors]
  [vars]
    type = NodalValueSampler
    sort_by = x
    variable = 'pgas zi xnacl'
    execute_on = 'timestep_end'
    outputs = spatial
  []
  [auxvars]
    type = ElementValueSampler
    sort_by = x
    variable = 'saturation_gas x1 y0'
    execute_on = 'timestep_end'
    outputs = spatial
  []
[]

[Postprocessors]
  [pgas]
    type = PointValue
    point = '25.25 0 0'
    variable = pgas
    outputs = time
  []
  [sgas]
    type = PointValue
    point = '25.25 0 0'
    variable = saturation_gas
    outputs = time
  []
  [zi]
    type = PointValue
    point = '25.25 0 0'
    variable = zi
    outputs = time
  []
  [massgas]
    type = PorousFlowFluidMass
    fluid_component = 1
    outputs = time
  []
  [x1]
    type = PointValue
    point = '25.25 0 0'
    variable = x1
    outputs = time
  []
  [y0]
    type = PointValue
    point = '25.25 0 0'
    variable = y0
    outputs = time
  []
  [xnacl]
    type = PointValue
    point = '25.25 0 0'
    variable = xnacl
    outputs = time
  []
[]

[Outputs]
  print_linear_residuals = false
  perf_graph = true
  sync_times = '2.592e6 8.64e6 8.64e7 8.64e8'
  [time]
    type = CSV
  []
  [spatial]
    type = CSV
    sync_only = true
  []
[]

modules/solid_mechanics/test/tests/domain_integral_thermal/j_integral_2d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
[]

[Mesh]
  file = crack2d.e
  displacements = 'disp_x disp_y'
#  uniform_refine = 3
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*x/504)
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 400
    value = 0.0
  [../]

  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = 900
    value = 0.0
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1.35e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
    temp = temp
    stress_free_temperature = 0.0

  [../]
[]


[Executioner]

  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 40

   nl_rel_step_tol= 1e-10
   nl_rel_tol = 1e-10


   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = j_integral_2d_out
  exodus = true
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

modules/xfem/test/tests/solid_mechanics_basic/sm/test_crack_counter.i

# This test is used to verify that the pure test object (TestCrackCounter)
# is correctly using the API for extracting the crack_tip_origin_direction_map
# from XFEM.  The map contains information of the location of all the crack tips
# computed by XFEM.  The TestCrackCounter postprocessor simply returns the
# number of elements in the map which corresponds to the number of cracks.
#
# In this test case 4 prescribed cracks are applied.  Therefore, the
# TestCrackCounter postprocessor returns a value of 4.

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 11
  ny = 11
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '1.0  0.5  0.7  0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./line_seg_cut_uo2]
    type = LineSegmentCutUserObject
    cut_data = '0.0  0.5  0.3  0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./line_seg_cut_uo3]
    type = LineSegmentCutUserObject
    cut_data = '0.5  0.0  0.5  0.3'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
  [./line_seg_cut_uo4]
    type = LineSegmentCutUserObject
    cut_data = '0.5  1.0  0.5  0.7'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    planar_formulation = plane_strain
    add_variables = true
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x='0  50   100'
    y='0  0.02 0.1'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./topx]
    type = DirichletBC
    boundary = top
    variable = disp_x
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_y
    function = pull
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = 0
  [../]

  [./_elastic_strain]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]

[Postprocessors]
  [./number_of_cracks]
    type = TestCrackCounter
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-9

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
  num_steps = 5000

  max_xfem_update = 1
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/ad_2D_geometries/2D-RZ_test.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces, using 2D axisymmetric geometry.
# This test uses the strain calculators ComputeAxisymmetricRZSmallStrain
# and ComputeAxisymmetricRZIncrementalStrain which are generated by the
# TensorMechanics MasterAction depending on the cli_args given in the tests file.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000, respectively. The resulting compressive tangential
# stress is largest at the inner wall and, from the above equation, has a value
# of -271429.

[Mesh]
  file = 2D-RZ_mesh.e
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    generate_output = 'stress_zz'
    use_automatic_differentiation = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.345
  [../]
  [./stress]
  [../]
[]

[BCs]
# pin particle along symmetry planes
  [./no_disp_r]
    type = DirichletBC
    variable = disp_r
    boundary = xzero
    value = 0.0
  [../]

  [./no_disp_z]
    type = DirichletBC
    variable = disp_z
    boundary = yzero
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_r]
    type = ADPressure
    variable = disp_r
    boundary = outer
    component = 0
    constant = 200000
  [../]

 [./exterior_pressure_z]
    type = ADPressure
    variable = disp_z
    boundary = outer
    component = 1
    constant = 200000
  [../]

  [./interior_pressure_r]
    type = ADPressure
    variable = disp_r
    boundary = inner
    component = 0
    constant = 100000
  [../]

  [./interior_pressure_z]
    type = ADPressure
    variable = disp_z
    boundary = inner
    component = 1
    constant = 100000
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '  201               hypre    boomeramg      10'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

  start_time = 0.0
  end_time = 1
#  num_steps = 1000

  dtmax = 5e6
  dtmin = 1

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    optimal_iterations = 6
    iteration_window = 0
    linear_iteration_ratio = 100
  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_elastic/rz_small_elastic-noad.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
  [./disp_z]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = StressDivergenceRZTensors
    component = 0
    variable = disp_r
  [../]
  [./stress_z]
    type = StressDivergenceRZTensors
    component = 1
    variable = disp_z
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0
  [../]
  [./axial]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
  [./strain]
    type = ComputeAxisymmetricRZSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
  file_base = rz_small_elastic_out
[]

test/tests/transfers/multiapp_mesh_function_transfer/tosub_source_displaced.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  displacements = 'x_disp y_disp'
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./x_disp]
    initial_condition = -0.1
  [../]
  [./y_disp]
    initial_condition = -0.1
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    positions = '.1 .1 0 0.6 0.6 0 0.6 0.1 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = tosub_sub.i
    execute_on = timestep_end
  [../]
[]

[Transfers]
  [./to_sub]
    source_variable = u
    direction = to_multiapp
    variable = transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
    #displaced_source_mesh = true
  [../]

  [./elemental_to_sub]
    source_variable = u
    direction = to_multiapp
    variable = elemental_transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
    #displaced_source_mesh = true
  [../]
[]

modules/richards/test/tests/jacobian_2/jn_fu_17.i

# two phase
# water saturated

# gravity = true
# supg = true
# transient = true


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      block = 0
      function = init_p
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      block = 0
      function = init_p
    [../]
  [../]
[]

[Functions]
  [./init_p]
    type = ParsedFunction
    value = x+0.6*y+0.3*z
  [../]
[]

[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn17
  exodus = false
[]

modules/tensor_mechanics/test/tests/interaction_integral_benchmark/input.i

# Uses InteractionIntegralBenchmarkBC to test the mixed-mode stress intensity
# factor capability. InteractionIntegralBenchmarkBC applies a displacement
# field for which KI = KII = KIII = 1.0. Using the option 2d = true gives a
# q field that is constant along the tangent and returns Ki = 1.0 for all i.
# To get the correct value for all nodes with 2d = false, the mesh around the
# crack tip must be refined and the q-function radii must be reduced by at
# least two orders of magnitude.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = 360degree_model.e
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = FEProblem
[]

[Functions]
  [./kifunc]
    type = PiecewiseLinear
    x = '0.0 1.0 2.0'
    y = '0.0 1.0 2.0'
  [../]
[]

[DomainIntegral]
  integrals = 'JIntegral InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 1001
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '0.5 1.0 1.5 2.0'
  radius_outer = '1.0 1.5 2.0 2.5'
  youngs_modulus = 30000
  poissons_ratio = 0.3
  block = 1
  2d = true
  axis_2d = 2
  equivalent_k = True
  incremental = true
[]

[AuxVariables]
  [./dq_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dq_y]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./dq_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[BCs]
  [./all_x]
    type = InteractionIntegralBenchmarkBC
    variable = disp_x
    component = x
    boundary = 1
    KI_function = kifunc
    KII_function = 1.0
    KIII_function = 1.0
    youngs_modulus = 30000
    poissons_ratio = 0.3
    crack_front_definition = crackFrontDefinition
    crack_front_point_index = 0
  [../]
  [./all_y]
    type = InteractionIntegralBenchmarkBC
    variable = disp_y
    component = y
    boundary = 1
    KI_function = kifunc
    KII_function = 1.0
    KIII_function = 1.0
    youngs_modulus = 30000
    poissons_ratio = 0.3
    crack_front_definition = crackFrontDefinition
    crack_front_point_index = 0
  [../]
  [./all_z]
    type = InteractionIntegralBenchmarkBC
    variable = disp_z
    component = z
    boundary = 1
    KI_function = kifunc
    KII_function = 1.0
    KIII_function = 1.0
    youngs_modulus = 30000
    poissons_ratio = 0.3
    crack_front_definition = crackFrontDefinition
    crack_front_point_index = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 30000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-3
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 2
  num_steps = 2
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]

  [./nl_its]
    type = NumNonlinearIterations
  [../]

  [./lin_its]
    type = NumLinearIterations
  [../]

[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = 360degree_model_out
  exodus = true
  csv = true
[]

modules/richards/test/tests/gravity_head_2/gh17.i

# unsaturated = false
# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 1
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-15 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh17
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_2/ring2_template2.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring2_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

test/tests/restart/start_time_override/transient.i

[Mesh]
  type = GeneratedMesh
  nx = 5
  ny = 5
  dim = 2
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Postprocessors]
  [u_norm]
    type = ElementL2Norm
    variable = u
  []
[]

[Executioner]
  type = Transient
  dt = 0.1
  num_steps = 5
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  checkpoint = true
  csv = true
[]

test/tests/outputs/variables/output_vars_hidden_shown_check.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD9
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]

  # ODE variables
  [./x]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
  [./y]
    family = SCALAR
    order = FIRST
    initial_condition = 2
  [../]
[]

[AuxVariables]
  [./elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./elemental_restricted]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./nodal]
    order = FIRST
    family = LAGRANGE
  [../]

  [./nodal_restricted]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./conv_u]
    type = CoupledForce
    variable = u
    v = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[AuxKernels]
  [./elemental]
    type = ConstantAux
    variable = elemental
    value = 1
  [../]

  [./elemental_restricted]
    type = ConstantAux
    variable = elemental_restricted
    value = 1
  [../]

  [./nodal]
    type = ConstantAux
    variable = elemental
    value = 2
  [../]

  [./nodal_restricted]
    type = ConstantAux
    variable = elemental_restricted
    value = 2
  [../]
[]

[ScalarKernels]
  [./td1]
    type = ODETimeDerivative
    variable = x
  [../]
  [./ode1]
    type = ImplicitODEx
    variable = x
    y = y
  [../]

  [./td2]
    type = ODETimeDerivative
    variable = y
  [../]
  [./ode2]
    type = ImplicitODEy
    variable = y
    x = x
  [../]
[]

[BCs]
  active = 'left_u right_u left_v'

  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 9
  [../]

  [./left_v]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 5
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 2
  [../]
[]

[Postprocessors]
  [./x]
    type = ScalarVariable
    variable = x
    execute_on = timestep_end
  [../]
  [./y]
    type = ScalarVariable
    variable = y
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  dt = 0.01
  num_steps = 10
[]

[Outputs]
  file_base = out_hidden
  exodus = true
  hide = 'u elemental nodal x'
  show = u
[]

test/tests/multiapps/multilevel/dt_from_sub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.3

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0 0.5 0.5 0'
    input_files = dt_from_sub_subsub.i
  [../]
[]

modules/porous_flow/test/tests/jacobian/chem11.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Dissolution with temperature, with three primary variables and four reactions
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.05
  [../]
  [./b]
    initial_condition = 0.1
  [../]
  [./c]
    initial_condition = 0.15
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 0.1
  [../]
  [./eqm_k1]
    initial_condition = 0.2
  [../]
  [./eqm_k2]
    initial_condition = -0.2
  [../]
  [./eqm_k3]
    initial_condition = 0.0
  [../]
  [./ini_sec_conc0]
    initial_condition = 0.02
  [../]
  [./ini_sec_conc1]
    initial_condition = 0.04
  [../]
  [./ini_sec_conc2]
    initial_condition = 0.06
  [../]
  [./ini_sec_conc3]
    initial_condition = 0.08
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = '1E10 2E10 3E10 4E10'
    stoichiometry = '1 1 2 0.1'
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = '1.1E10 2.2E10 3.3E10 4.4E10'
    stoichiometry = '2 2 0.1 0.5'
  [../]
  [./c]
    type = PorousFlowPreDis
    variable = c
    mineral_density = '0.1E10 0.2E10 0.3E10 0.4E10'
    stoichiometry = '3 3 0.1 1'
  [../]
  [./temp]
    type = Diffusion
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b c temp'
    number_fluid_phases = 1
    number_fluid_components = 4
    number_aqueous_kinetic = 4
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b c'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b c'
    num_reactions = 4
    equilibrium_constants_as_log10 = true
    equilibrium_constants = 'eqm_k0 eqm_k1 eqm_k2 eqm_k3'
    primary_activity_coefficients = '0.5 0.8 0.9'
    reactions = '1 2 3
                 1 -2 -3
                 2 0.1 0.1
                 0.1 0.5 1'
    specific_reactive_surface_area = '-44.4E-2 22.1E-2 32.1E-1 -50E-2'
    kinetic_rate_constant = '0.678 0.999 1.23 0.3'
    activation_energy = '4.4 3.3 4.5 4.0'
    molar_volume = '3.3 4.4 5.5 6.6'
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = '1.0 1.1 1.2 0.9'
    eta_exponent = '1.2 1.01 1.1 1.2'
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = 'ini_sec_conc0 ini_sec_conc1 ini_sec_conc2 ini_sec_conc3'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

modules/richards/test/tests/jacobian_2/jn22.i

# two phase
# unsaturated = true

# gravity = true
# supg = true
# transient = true
# piecewiselinearflux = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = 'left right'
    pressures = '-0.9 0.9'
    bare_fluxes = '1E8 2E8'  # can not make too high as finite-difference constant state bums out due to precision loss
    use_mobility = true
    use_relperm = true
    variable = pwater
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn08
  exodus = false
[]

modules/xfem/test/tests/moving_interface/moving_bimaterial.i

# This test is for two layer materials with different youngs modulus
# The global stress is determined by switching the stress based on level set values
# The material interface is marked by a level set function
# The two layer materials are glued together

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
    heal_always = true
  [../]
[]

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 5
    ny = 5
    xmin = 0.0
    xmax = 5.
    ymin = 0.0
    ymax = 5.
    elem_type = QUAD4
  []
  [./left_bottom]
    type = ExtraNodesetGenerator
    new_boundary = 'left_bottom'
    coord = '0.0 0.0'
    input = generated_mesh
  [../]
  [./left_top]
    type = ExtraNodesetGenerator
    new_boundary = 'left_top'
    coord = '0.0 5.'
    input = left_bottom
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Functions]
  [./ls_func]
    type = ParsedFunction
    value = 'y-2.5 + t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./a_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./a_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./a_strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./b_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./b_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./b_strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_xx
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_yy
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
    variable = stress_xy
  [../]
  [./a_strain_xx]
    type = RankTwoAux
    rank_two_tensor = A_total_strain
    index_i = 0
    index_j = 0
    variable = a_strain_xx
  [../]
  [./a_strain_yy]
    type = RankTwoAux
    rank_two_tensor = A_total_strain
    index_i = 1
    index_j = 1
    variable = a_strain_yy
  [../]
  [./a_strain_xy]
    type = RankTwoAux
    rank_two_tensor = A_total_strain
    index_i = 0
    index_j = 1
    variable = a_strain_xy
  [../]
  [./b_strain_xx]
    type = RankTwoAux
    rank_two_tensor = B_total_strain
    index_i = 0
    index_j = 0
    variable = b_strain_xx
  [../]
  [./b_strain_yy]
    type = RankTwoAux
    rank_two_tensor = B_total_strain
    index_i = 1
    index_j = 1
    variable = b_strain_yy
  [../]
  [./b_strain_xy]
    type = RankTwoAux
    rank_two_tensor = B_total_strain
    index_i = 0
    index_j = 1
    variable = b_strain_xy
  [../]
[]

[Constraints]
  [./dispx_constraint]
    type = XFEMSingleVariableConstraint
    use_displaced_mesh = false
    variable = disp_x
    alpha = 1e8
    geometric_cut_userobject = 'level_set_cut_uo'
  [../]
  [./dispy_constraint]
    type = XFEMSingleVariableConstraint
    use_displaced_mesh = false
    variable = disp_y
    alpha = 1e8
    geometric_cut_userobject = 'level_set_cut_uo'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_x
    function = 0.03*t
  [../]
  [./topy]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_y
    function = '0.03*t'
  [../]
[]

[Materials]
  [./elasticity_tensor_A]
    type = ComputeIsotropicElasticityTensor
    base_name = A
    youngs_modulus = 1e9
    poissons_ratio = 0.3
  [../]
  [./strain_A]
    type = ComputeSmallStrain
    base_name = A
  [../]
  [./stress_A]
    type = ComputeLinearElasticStress
    base_name = A
  [../]
  [./elasticity_tensor_B]
    type = ComputeIsotropicElasticityTensor
    base_name = B
    youngs_modulus = 1e7
    poissons_ratio = 0.3
  [../]
  [./strain_B]
    type = ComputeSmallStrain
    base_name = B
  [../]
  [./stress_B]
    type = ComputeLinearElasticStress
    base_name = B
  [../]
  [./combined_stress]
    type = LevelSetBiMaterialRankTwo
    levelset_positive_base = 'A'
    levelset_negative_base = 'B'
    level_set_var = ls
    prop_name = stress
  [../]
  [./combined_dstressdstrain]
    type = LevelSetBiMaterialRankFour
    levelset_positive_base = 'A'
    levelset_negative_base = 'B'
    level_set_var = ls
    prop_name = Jacobian_mult
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'bt'

# controls for linear iterations
  l_max_its = 20
  l_tol = 1e-3

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-12

# time control
  start_time = 0.0
  dt = 0.1
  num_steps = 2

  max_xfem_update = 1
[]

[Outputs]
  exodus = true
  execute_on = timestep_end
  csv = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/gravity/gravity_sm.i

# Gravity Test
#
# This test is designed to exercise the gravity body force kernel.
#
# The mesh for this problem is a rectangular bar 10 units by 1 unit
#   by 1 unit.
#
# The boundary conditions for this problem are as follows.  The
#   displacement is zero on each of side that faces a negative
#   coordinate direction.  The acceleration of gravity is 20.
#
# The material has a Young's modulus of 1e6 and a density of 2.
#
# The analytic solution for the displacement along the bar is:
#
# u(x) = -b*x^2/(2*E)+b*L*x/E
#
# The displacement at x=L is b*L^2/(2*E) = 2*20*10*10/(2*1e6) = 0.002.
#
# The analytic solution for the stress along the bar assuming linear
#   elasticity is:
#
# S(x) = b*(L-x)
#
# The stress at x=0 is b*L = 2*20*10 = 400.
#
# Note:  The simulation does not measure stress at x=0.  The stress
#   is reported at element centers.  The element closest to x=0 sits
#   at x = 1/4 and has a stress of 390.  This matches the linear
#   stress distribution that is expected.  The same situation applies
#   at x = L where the stress is zero analytically.  The nearest
#   element is at x=9.75 where the stress is 10.
#

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = gravity_test.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Kernels]
  [./gravity]
    type = Gravity
    variable = disp_x
    value = 20
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 5
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    bulk_modulus = 0.333333333333333e6
  [../]

  [./density]
    type = Density
    block = 1
    density = 2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  file_base = gravity_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/multiapps/picard_failure/picard_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
  [./nan]
    type = NanAtCountKernel
    variable = v
    count = 32
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Postprocessors]
  [./elem_average_value]
    type = ElementAverageValue
    variable = v
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/gravity_head_1/gh13.i

# unsaturated = false
# gravity = false
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh13
  exodus = true
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_2d_topo_q_func.i

#This tests the J-Integral evaluation capability.
#This is a 2d plane strain model
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack2d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  q_function_type = Topology
  ring_first = 1
  ring_last = 4
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = j_integral_2d_topo_q_func_out
  exodus = true
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_2/plane2_template1_sm.i

[Mesh]
  file = plane2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_x = diag_saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/richards/test/tests/newton_cooling/nc01.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1000
  ny = 1
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 1.0E6
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]




[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = 2E6
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 2E6
  [../]
  [./newton]
    type = RichardsPiecewiseLinearSink
    variable = pressure
    boundary = right
    pressures = '0 100000 200000 300000 400000 500000 600000 700000 800000 900000 1000000 1100000 1200000 1300000 1400000 1500000 1600000 1700000 1800000 1900000 2000000'
    bare_fluxes = '0. 5.6677197748570516e-6 0.000011931518841831313 0.00001885408740732065 0.000026504708864284114 0.000034959953203725676 0.000044304443352900224 0.00005463170211001232 0.00006604508815181467 0.00007865883048198513 0.00009259917167338928 0.00010800563134618119 0.00012503240252705603 0.00014384989486488752 0.00016464644014777016 0.00018763017719085535 0.0002130311349595711 0.00024110353477682344 0.00027212833465544285 0.00030641604122040985 0.00034430981736352295'
    use_mobility = false
    use_relperm = false
  [../]
[]

[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]



[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGnone
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'andy'
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-15 10000'
  [../]


[]

[Executioner]
  type = Transient
  end_time = 1E8
  dt = 1E6
[]

[Outputs]
  file_base = nc01
  interval = 100000
  execute_on = 'initial final'
  exodus = true
[]

test/tests/geomsearch/3d_moving_penetration/pl_test4qtt.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4qtt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_abs_tol = 1e-7
  l_max_its = 10

  start_time = 0.0
  dt = 0.0125
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test4qtt_out
  exodus = true
[]

modules/chemical_reactions/test/tests/aqueous_equilibrium/2species.i

# Simple equilibrium reaction example to illustrate the use of the AqueousEquilibriumReactions
# action.
# In this example, two primary species a and b are transported by diffusion and convection
# from the left of the porous medium, reacting to form two equilibrium species pa2 and pab
# according to the equilibrium reaction specified in the AqueousEquilibriumReactions block as:
#
#      reactions = '2a = pa2     2
#                   a + b = pab -2'
#
# where the 2 is the weight of the equilibrium species, the 2 on the RHS of the first reaction
# refers to the equilibrium constant (log10(Keq) = 2), and the -2 on the RHS of the second
# reaction equates to log10(Keq) = -2.
#
# The AqueousEquilibriumReactions action creates all the required kernels and auxkernels
# to compute the reaction given by the above equilibrium reaction equation.
#
# Specifically, it adds to following:
# * An AuxVariable named 'pa2' (given in the reactions equations)
# * An AuxVariable named 'pab' (given in the reactions equations)
# * A AqueousEquilibriumRxnAux AuxKernel for each AuxVariable with all parameters
# * A CoupledBEEquilibriumSub Kernel for each primary species with all parameters
# * A CoupledDiffusionReactionSub Kernel for each primary species with all parameters
# * A CoupledConvectionReactionSub Kernel for each primary species with all parameters if
# pressure is a coupled variable

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
[]

[AuxVariables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./pressure]
    type = FunctionIC
    variable = pressure
    function = 2-x
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = 'a b'
    reactions = '2a = pa2     2,
                 a + b = pab -2'
    secondary_species = 'pa2 pab'
    pressure = pressure
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./a_conv]
    type = PrimaryConvection
    variable = a
    p = pressure
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./b_diff]
    type = PrimaryDiffusion
    variable = b
  [../]
  [./b_conv]
    type = PrimaryConvection
    variable = b
    p = pressure
  [../]
[]

[BCs]
  [./a_left]
    type = DirichletBC
    variable = a
    boundary = left
    value = 1.0e-2
  [../]
  [./a_right]
    type = ChemicalOutFlowBC
    variable = a
    boundary = right
  [../]
  [./b_left]
    type = DirichletBC
    variable = b
    boundary = left
    value = 1.0e-2
  [../]
  [./b_right]
    type = ChemicalOutFlowBC
    variable = b
    boundary = right
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-4 1e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-12
  start_time = 0.0
  end_time = 100
  dt = 10.0
[]

[Outputs]
  file_base = 2species_out
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

modules/tensor_mechanics/test/tests/domain_integral_thermal/j_integral_2d_mean_ctefunc.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack2d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*x/504)
  [../]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-6'
    value = 'scale * (0.5 * t^2 - 0.5 * tsf^2) / (t - tref)'
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  temperature = temp
  incremental = true
  eigenstrain_names = thermal_expansion
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
    eigenstrain_names = thermal_expansion
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 400
    value = 0.0
  [../]

  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = 900
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeMeanThermalExpansionFunctionEigenstrain
    block = 1
    thermal_expansion_function = cte_func_mean
    stress_free_temperature = 0.0
    thermal_expansion_function_reference_temperature = 0.5
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 40

  nl_rel_step_tol= 1e-10
  nl_rel_tol = 1e-10

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  csv = true
  execute_on = 'timestep_end'
[]

[Preconditioning]
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

modules/external_petsc_solver/test/tests/external_petsc_problem/external_petsc_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./cf]
    type = CoupledForce
    coef = 10000
    variable = u
    v=v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    type = TransientMultiApp
    input_files = 'petsc_problem_transient.i'
    app_type = ExternalPetscSolverApp
    library_path = '../../../../external_petsc_solver/lib'
  [../]
[]

[Transfers]
  [./fromsub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub_app
    source_variable = u
    variable = v
    fixed_meshes = true
  [../]
[]

modules/richards/test/tests/theis/th_lumped_01.i

# fully-saturated
# production
# lumped
[Mesh]
  type = FileMesh
  file = th01_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  sat_UO = Saturation
  seff_UO = Seff1VG
  SUPG_UO = SUPGstandard
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '0.5 1 2 10'
    x = '0 1 10 100'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]

  [./total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsLumpedMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsPolyLineSink
    pressures = '-1E9 1E9'
    fluxes = '200 200'
    point_file = th01.points
    SumQuantityUO = total_outflow_mass
    variable = pressure
  [../]
[]


[Postprocessors]
  [./flow_report]
    type = RichardsPlotQuantity
    uo = total_outflow_mass
  [../]
  [./p50]
    type = PointValue
    variable = pressure
    point = '50 0 0'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E5
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-6 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 100
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = th_lumped_01
  csv = true
[]

modules/phase_field/test/tests/anisotropic_interfaces/kobayashi.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 32
  ny = 32
  xmax = 0.7
  ymax = 0.7
[]

[Variables]
  [./w]
  [../]
  [./T]
  [../]
[]

[ICs]
  [./wIC]
    type = SmoothCircleIC
    variable = w
    int_width = 0.1
    x1 = 0.35
    y1 = 0.35
    radius = 0.08
    outvalue = 0
    invalue = 1
  [../]
[]

[Kernels]
  [./w_dot]
    type = TimeDerivative
    variable = w
  [../]
  [./anisoACinterface1]
    type = ACInterfaceKobayashi1
    variable = w
    mob_name = M
  [../]
  [./anisoACinterface2]
    type = ACInterfaceKobayashi2
    variable = w
    mob_name = M
  [../]
  [./AllenCahn]
    type = AllenCahn
    variable = w
    mob_name = M
    f_name = fbulk
    args = 'T'
  [../]
  [./T_dot]
    type = TimeDerivative
    variable = T
  [../]
  [./CoefDiffusion]
    type = Diffusion
    variable = T
  [../]
  [./w_dot_T]
    type = CoefCoupledTimeDerivative
    variable = T
    v = w
    coef = -1.8 #This is -K from kobayashi's paper
  [../]
[]

[Materials]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = fbulk
    args = 'w T'
    constant_names = 'alpha gamma T_e pi'
    constant_expressions = '0.9 10 1 4*atan(1)'
    function = 'm:=alpha/pi * atan(gamma * (T_e - T)); 1/4*w^4 - (1/2 - m/3) * w^3 + (1/4 - m/2) * w^2'
    derivative_order = 2
    outputs = exodus
  [../]
  [./material]
    type = InterfaceOrientationMaterial
    op = w
  [../]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'M'
    prop_values = '3333.333'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  scheme = bdf2
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-08
  l_tol = 1e-4
  l_max_its = 30

  dt = 0.001
  num_steps = 6
[]

[Outputs]
  exodus = true
  perf_graph = true
  execute_on = 'INITIAL FINAL'
[]

modules/phase_field/test/tests/initial_conditions/BoundingBoxIC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 2
  xmax = 50
  ymax = 25
  elem_type = QUAD4
  uniform_refine = 2
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c_IC]
    type = BoundingBoxIC
    x1 = 15.0
    x2 = 35.0
    y1 = 0.0
    y2 = 25.0
    inside = 1.0
    outside = -0.8
    variable = c
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 15
  nl_max_its = 10

  start_time = 0.0
  num_steps = 2
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/cp_user_object/exception.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
  [../]
  [./uy]
  [../]
  [./uz]
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./rotout]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./gss]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.1*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./gss]
    type = MaterialStdVectorAux
    variable = gss
    property = state_var_gss
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = tdisp
  [../]
[]

[UserObjects]
  [./slip_rate_gss]
    type = CrystalPlasticitySlipRateGSS
    variable_size = 12
    slip_sys_file_name = input_slip_sys.txt
    num_slip_sys_flowrate_props = 2
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    uo_state_var_name = state_var_gss
  [../]
  [./slip_resistance_gss]
    type = CrystalPlasticitySlipResistanceGSS
    variable_size = 12
    uo_state_var_name = state_var_gss
  [../]
  [./state_var_gss]
    type = CrystalPlasticityStateVariable
    variable_size = 12
    groups = '0 4 8 12'
    group_values = '60.8 60.8 60.8'
    uo_state_var_evol_rate_comp_name = state_var_evol_rate_comp_gss
    scale_factor = 1.0
  [../]
  [./state_var_evol_rate_comp_gss]
    type = CrystalPlasticityStateVarRateComponentGSS
    variable_size = 12
    hprops = '1.0 541.5 109.8 2.5'
    uo_slip_rate_name = slip_rate_gss
    uo_state_var_name = state_var_gss
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainUObasedCP
    block = 0
    stol = 1e-2
    tan_mod_type = exact
    uo_slip_rates = 'slip_rate_gss'
    uo_slip_resistances = 'slip_resistance_gss'
    uo_state_vars = 'state_var_gss'
    uo_state_var_evol_rate_comps = 'state_var_evol_rate_comp_gss'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'ux uy uz'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
  [../]
  [./gss]
    type = ElementAverageValue
    variable = gss
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.01
  num_steps = 10
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/fromsub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  elem_type = QUAD8
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxVariables]
  [./u_elemental]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./fun_aux]
    type = FunctionAux
    function = 'x + y'
    variable = u_elemental
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_2d.i

#This tests the J-Integral evaluation capability.
#This is a 2d plane strain model
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack2d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = j_integral_2d_out
  exodus = true
  csv = true
[]

modules/richards/test/tests/theis/th02.i

# fully-saturated
# production
[Mesh]
  type = FileMesh
  file = th02_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1 2 4 20'
    x = '0 1 10 100'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]

  [./total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsPolyLineSink
    pressures = '-1E9 1E9'
    fluxes = '200 200'
    point_file = th01.points
    SumQuantityUO = total_outflow_mass
    variable = pressure
  [../]
[]


[Postprocessors]
  [./flow_report]
    type = RichardsPlotQuantity
    uo = total_outflow_mass
  [../]
  [./p50]
    type = PointValue
    variable = pressure
    point = '50 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E5
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-6 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 100
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  file_base = th02
  csv = true
[]

modules/xfem/test/tests/pressure_bc/sm/inclined_edge_2d_pressure.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = False
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 9
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.0 0.33 0.5 0.67'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1.0 2.0'
    y = '0 500 1000'
  [../]
[]

[BCs]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    variable = disp_x
    value = 0.0
  [../]
[]

[DiracKernels]
  [./pressure_x]
    type = XFEMPressure
    variable = disp_x
    component = 0
    function = pressure
  [../]

  [./pressure_y]
    type = XFEMPressure
    variable = disp_y
    component = 1
    function = pressure
  [../]
[]


[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1
  end_time = 2
[]

[Outputs]
  file_base = inclined_edge_2d_pressure_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/multiapps/full_solve_multiapp_reset/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = ADDiffusion
    variable = u
  [../]
  [td]
    type = ADTimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.25
  solve_type = 'NEWTON'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_added_mass_inertia_damping_ti.i

# Test for small strain euler beam vibration in y direction

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The beam is massless with a lumped mass at the end of the beam. The lumped
# mass also has a moment of inertia associated with it.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 1e4
# Shear modulus (G) = 4e7
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 0.01
# Iy = 1e-4 = Iz
# Length (L)= 4 m
# mass (m) = 0.01899772
# Moment of inertia of lumped mass:
# Ixx = 0.2
# Iyy = 0.1
# Izz = 0.1
# mass proportional damping coefficient (eta) = 0.1

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 6.4e6
# Therefore, the beam behaves like a Euler-Bernoulli beam.

# The displacement time history from this analysis matches with that obtained from Abaqus.

# Values from the first few time steps are as follows:
# time   disp_y              vel_y               accel_y
# 0.0    0.0                 0.0                 0.0
# 0.1    0.001278249649738   0.025564992994761   0.51129985989521
# 0.2    0.0049813090917644  0.048496195845768  -0.052675802875074
# 0.3    0.0094704658873002  0.041286940064947  -0.091509312741339
# 0.4    0.013082280729802   0.03094935678508   -0.115242352856
# 0.5    0.015588313103503   0.019171290688959  -0.12031896906642

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./accel_x] # These auxkernels are only to check output
    type = TestNewmarkTI
    displacement = disp_x
    variable = accel_x
    first = false
  [../]
  [./accel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = accel_y
    first = false
  [../]
  [./accel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = accel_z
    first = false
  [../]
  [./vel_x]
    type = TestNewmarkTI
    displacement = disp_x
    variable = vel_x
  [../]
  [./vel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = vel_y
  [../]
  [./vel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = vel_z
  [../]
  [./rot_accel_x]
    type = TestNewmarkTI
    displacement = rot_x
    variable = rot_accel_x
    first = false
  [../]
  [./rot_accel_y]
    type = TestNewmarkTI
    displacement = rot_y
    variable = rot_accel_y
    first = false
  [../]
  [./rot_accel_z]
    type = TestNewmarkTI
    displacement = rot_z
    variable = rot_accel_z
    first = false
  [../]
  [./rot_vel_x]
    type = TestNewmarkTI
    displacement = rot_x
    variable = rot_vel_x
  [../]
  [./rot_vel_y]
    type = TestNewmarkTI
    displacement = rot_y
    variable = rot_vel_y
  [../]
  [./rot_vel_z]
    type = TestNewmarkTI
    displacement = rot_z
    variable = rot_vel_z
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
  [./x_inertial]
    type = NodalTranslationalInertia
    variable = disp_x
    boundary = right
    mass = 0.01899772
    eta = 0.1
  [../]
  [./y_inertial]
    type = NodalTranslationalInertia
    variable = disp_y
    boundary = right
    mass = 0.01899772
    eta = 0.1
  [../]
  [./z_inertial]
    type = NodalTranslationalInertia
    variable = disp_z
    boundary = right
    mass = 0.01899772
    eta = 0.1
  [../]
  [./rot_x_inertial]
    type = NodalRotationalInertia
    variable = rot_x
    rotations = 'rot_x rot_y rot_z'
    boundary = right
    Ixx = 2e-1
    Iyy = 1e-1
    Izz = 1e-1
    eta = 0.1
    component = 0
  [../]
  [./rot_y_inertial]
    type = NodalRotationalInertia
    variable = rot_y
    rotations = 'rot_x rot_y rot_z'
    boundary = right
    Ixx = 2e-1
    Iyy = 1e-1
    Izz = 1e-1
    eta = 0.1
    component = 1
  [../]
  [./rot_z_inertial]
    type = NodalRotationalInertia
    variable = rot_z
    rotations = 'rot_x rot_y rot_z'
    boundary = right
    Ixx = 2e-1
    Iyy = 1e-1
    Izz = 1e-1
    eta = 0.1
    component = 2
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 10.0'
    y = '0.0 1e-2  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  petsc_options_iname = '-ksp_type -pc_type'
  petsc_options_value = 'preonly   lu'

  start_time = 0.0
  dt = 0.1
  end_time = 5.0
  timestep_tolerance = 1e-6

  # Time integrator scheme
  scheme = "newmark-beta"
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e4
    poissons_ratio = -0.999875
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.01
    Ay = 0.0
    Az = 0.0
    Iy = 1.0e-4
    Iz = 1.0e-4
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  file_base = "dyn_euler_small_added_mass_inertia_damping_out"
  exodus = true
  csv = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/elem_prop_read_user_object/prop_grain_read.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
  nx = 10
  ny = 10
[]

[Variables]
  [./disp_x]
    block = 0
  [../]
  [./disp_y]
    block = 0
  [../]
[]

[GlobalParams]
  volumetric_locking_correction=true
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.05*t
  [../]
[]

[UserObjects]
  [./prop_read]
    type = ElementPropertyReadFile
    prop_file_name = 'input_file.txt'
    # Enter file data as prop#1, prop#2, .., prop#nprop
    nprop = 4
    read_type = grain
    ngrain = 3
    rand_seed = 25346
    rve_type = periodic
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
  [./e_yy]
    type = RankTwoAux
    variable = e_yy
    rank_two_tensor = elastic_strain
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = tdisp
  [../]
[]

[Materials]
  [./elasticity_tensor_with_Euler]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 0.176e5 0.176e5 1.684e5 0.176e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
    read_prop_user_object = prop_read
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y'
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_yy]
    type = ElementAverageValue
    variable = e_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.05
  num_steps = 1
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  file_base = prop_grain_read_out
  exodus = true
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
    use_displaced_mesh = true
  [../]
[]

test/tests/multiapps/relaxation/picard_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
    initial_condition = 1
  [../]
  [./inverse_v]
    initial_condition = 1
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = inverse_v
  [../]
[]

[AuxKernels]
  [./invert_v]
    type = QuotientAux
    variable = inverse_v
    denominator = v
    numerator = 20.0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./Neumann_right]
    type = NeumannBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_abs_tol = 1e-14
[]

[Outputs]
  exodus = true
  execute_on = 'INITIAL TIMESTEP_END'
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_begin
    positions = '0 0 0'
    input_files = picard_relaxed_sub.i
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

test/tests/materials/stateful_prop/stateful_prop_copy_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 10
  nx = 4
  ny = 4
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./prop1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./prop1_output]
    type = MaterialRealAux
    variable = prop1
    property = thermal_conductivity
  [../]
[]

[Kernels]
  [./heat]
    type = MatDiffusionTest
    variable = u
    prop_name = thermal_conductivity
  [../]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0.0
  [../]
  [./top]
    type = MTBC
    variable = u
    boundary = 1
    grad = 1.0
    prop_name = thermal_conductivity
  [../]
[]

[Materials]
  [./stateful]
    type = StatefulSpatialTest
    block = 0
  [../]
[]

[UserObjects]
  [./copy]
    type = MaterialCopyUserObject
    copy_times = 0.3
    copy_from_element = 0
    copy_to_element = 15
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  start_time = 0.0
  num_steps = 5
  dt = .1
[]

[Outputs]
  file_base = out_stateful_copy
  exodus = true
[]

modules/tensor_mechanics/test/tests/2D_geometries/2D-RZ_test.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces, using 2D axisymmetric geometry.
# This test uses the strain calculators ComputeAxisymmetricRZSmallStrain
# and ComputeAxisymmetricRZIncrementalStrain which are generated by the
# TensorMechanics MasterAction depending on the cli_args given in the tests file.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000, respectively. The resulting compressive tangential
# stress is largest at the inner wall and, from the above equation, has a value
# of -271429.

[Mesh]
  file = 2D-RZ_mesh.e
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    generate_output = 'stress_zz'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.345
  [../]
  [./stress]
  [../]
[]

[BCs]
# pin particle along symmetry planes
  [./no_disp_r]
    type = DirichletBC
    variable = disp_r
    boundary = xzero
    value = 0.0
  [../]

  [./no_disp_z]
    type = DirichletBC
    variable = disp_z
    boundary = yzero
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_r]
    type = Pressure
    variable = disp_r
    boundary = outer
    component = 0
    factor = 200000
  [../]

 [./exterior_pressure_z]
    type = Pressure
    variable = disp_z
    boundary = outer
    component = 1
    factor = 200000
  [../]

  [./interior_pressure_r]
    type = Pressure
    variable = disp_r
    boundary = inner
    component = 0
    factor = 100000
  [../]

  [./interior_pressure_z]
    type = Pressure
    variable = disp_z
    boundary = inner
    component = 1
    factor = 100000
  [../]
[]

[Debug]
    show_var_residual_norms = true
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '  201               hypre    boomeramg      10'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

  start_time = 0.0
  end_time = 1
#  num_steps = 1000

  dtmax = 5e6
  dtmin = 1

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    optimal_iterations = 6
    iteration_window = 0
    linear_iteration_ratio = 100
  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_thermal_expansion_function/finite_const.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function has a constant value,
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# This version of the test uses finite deformation theory.
# The two models produce very similar results.  There are slight
# differences due to the large deformation treatment.

[Mesh]
  file = 'blocks.e'
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
    use_automatic_differentiation = true
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain1]
    type = ADComputeMeanThermalExpansionFunctionEigenstrain
    block = 1
    thermal_expansion_function = cte_func_mean
    thermal_expansion_function_reference_temperature = 0.5
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
  [./thermal_expansion_strain2]
    type = ADComputeInstantaneousThermalExpansionFunctionEigenstrain
    block = 2
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (t - tsf) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 1.0
               2 1.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = NEWTON
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

modules/combined/examples/phase_field-mechanics/EBSD_reconstruction_grain_growth_mech.i

# This example reconstructs the grain structure from an EBSD data file
# Then, an isotropic grain model is run with linear elasticity and an anisotropic
# elasticity tensor that uses the measured EBSD angles.
[Mesh]
  uniform_refine = 2 #Mesh can go two levels coarser than the EBSD grid
  type = EBSDMesh
  filename = IN100_128x128.txt
[]

[GlobalParams]
  op_num = 8
  var_name_base = gr
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./PolycrystalVariables] #Polycrystal variable generation (30 order parameters)
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  [./gt_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./C1111]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./phi1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./Phi]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./phi2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./EBSD_grain]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./ReconVarIC]
      ebsd_reader = ebsd
      coloring_algorithm = bt
    [../]
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
  [./PolycrystalElasticDrivingForce]
  [../]
  [./TensorMechanics]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./gt_indices]
    type = FeatureFloodCountAux
    variable = gt_indices
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
  [./C1111]
    type = RankFourAux
    variable = C1111
    rank_four_tensor = elasticity_tensor
    index_l = 0
    index_j = 0
    index_k = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./vonmises_stress]
    type = RankTwoScalarAux
    variable = vonmises_stress
    rank_two_tensor = stress
    scalar_type = VonMisesStress
    execute_on = timestep_end
  [../]
  [./phi1]
    type = OutputEulerAngles
    variable = phi1
    euler_angle_provider = ebsd
    grain_tracker = grain_tracker
    output_euler_angle = 'phi1'
    execute_on = 'initial'
  [../]
  [./Phi]
    type = OutputEulerAngles
    variable = Phi
    euler_angle_provider = ebsd
    grain_tracker = grain_tracker
    output_euler_angle = 'Phi'
    execute_on = 'initial'
  [../]
  [./phi2]
    type = OutputEulerAngles
    variable = phi2
    euler_angle_provider = ebsd
    grain_tracker = grain_tracker
    output_euler_angle = 'phi2'
    execute_on = 'initial'
  [../]
  [./grain_aux]
    type = EBSDReaderPointDataAux
    variable = EBSD_grain
    ebsd_reader = ebsd
    data_name = 'feature_id'
    execute_on = 'initial'
  [../]
[]

[BCs]
  [./top_displacement]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = -2.0
  [../]
  [./x_anchor]
    type = DirichletBC
    variable = disp_x
    boundary = 'left right'
    value = 0.0
  [../]
  [./y_anchor]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
[]

[Modules]
  [./PhaseField]
    [./EulerAngles2RGB]
      crystal_structure = cubic
      euler_angle_provider = ebsd
      grain_tracker = grain_tracker
    [../]
  [../]
[]

[Materials]
  [./Copper]
    # T = 500 # K
    type = GBEvolution
    block = 0
    T = 500
    wGB = 0.6 # um
    GBmob0 = 2.5e-6 # m^4/(Js) from Schoenfelder 1997
    Q = 0.23 # Migration energy in eV
    GBenergy = 0.708 # GB energy in J/m^2
    molar_volume = 7.11e-6; # Molar volume in m^3/mol
    length_scale = 1.0e-6
    time_scale = 1.0e-6
  [../]
  [./ElasticityTensor]
    type = ComputePolycrystalElasticityTensor
    grain_tracker = grain_tracker
  [../]
  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
  [./n_elements]
    type = NumElems
    execute_on = 'initial timestep_end'
  [../]
  [./n_nodes]
    type = NumNodes
    execute_on = 'initial timestep_end'
  [../]
  [./DOFs]
    type = NumDOFs
  [../]
[]

[UserObjects]
  [./ebsd]
    type = EBSDReader
  [../]
  [./grain_tracker]
    type = GrainTrackerElasticity
    compute_var_to_feature_map = true
    ebsd_reader = ebsd

    fill_method = symmetric9
    C_ijkl = '1.27e5 0.708e5 0.708e5 1.27e5 0.708e5 1.27e5 0.7355e5 0.7355e5 0.7355e5'
    euler_angle_provider = ebsd
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -pc_hypre_boomeramg_strong_threshold'
  petsc_options_value = '  hypre    boomeramg                   0.7'
  l_tol = 1.0e-4
  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1.0e-8
  start_time = 0.0
  num_steps = 30
  dt = 10
  [./Adaptivity]
    initial_adaptivity = 0
    refine_fraction = 0.7
    coarsen_fraction = 0.1
    max_h_level = 2
  [../]
  [./TimeStepper]
    type = IterationAdaptiveDT
    cutback_factor = 0.9
    dt = 10.0
    growth_factor = 1.1
    optimal_iterations = 7
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

test/tests/multiapps/restart/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 10
[]

[Functions]
  [./u_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./fn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = u_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/initial_conditions/MultiSmoothSuperellipsoidIC_3D.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 22
  ny = 22
  nz = 22
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 100
  zmin = 0
  zmax = 100
  elem_type = HEX8
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./c]
    type = MultiSmoothSuperellipsoidIC
    variable = c
    invalue = 1.0
    outvalue = 0.1
    bubspac = '10 5'
    numbub = '5 5'
    semiaxis_b_variation = '0.25 0.35'
    semiaxis_variation_type = uniform
    semiaxis_a_variation = '0.2 0.3'
    semiaxis_a = '7 5'
    semiaxis_c_variation = '0.3 0.5'
    semiaxis_b = '10 8'
    semiaxis_c = '15 5'
    exponent = '2 3'
    prevent_overlap = true
    check_extremes = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 31 ds'
  l_max_its = 20
  l_tol = 1e-4
  nl_max_its = 20
  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-11
  start_time = 0.0
  num_steps = 1
  dt = 100.0
  enable = false
  [./Adaptivity]
    refine_fraction = .5
  [../]
[]

[Outputs]
  exodus = true
[]

[Problem]
  type = FEProblem
  solve = false
[]

modules/combined/test/tests/elastic_patch/elastic_patch_rspherical_sm.i

#
# Patch test for 1D spherical elements
#
# The 1D mesh is pinned at x=0.  The displacement at the outer node is set to
#   3e-3*X where X is the x-coordinate of that node.  That gives a strain of
#   3e-3 for the x, y, and z directions.
#
# Young's modulus is 1e6, and Poisson's ratio is 0.25.  This gives:
#
# Stress xx, yy, zz = E/(1+nu)/(1-2nu)*strain*((1-nu) + nu + nu) = 6000
#

[GlobalParams]
  displacements = 'disp_x'
[]

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]
  file = elastic_patch_rspherical.e
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '3e-3*x'
  [../]
[]

[Variables]
  [./disp_x]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    temp = temp
    use_displaced_mesh = false
  [../]
[]

[Kernels]
  [./heat]
    type = TimeDerivative
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./density]
    type = MaterialRealAux
    property = density
    variable = density
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '1 2'
    function = ur
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = '1 2 3'

    disp_r = disp_x

    youngs_modulus = 1e6
    poissons_ratio = 0.25

    temp = temp
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = '1 2 3'

    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    block = '1 2 3'
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  file_base = elastic_patch_rspherical_out
  exodus = true
[]

test/tests/transfers/multiapp_userobject_transfer/two_pipe_sub.i

[Mesh]
  type = FileMesh
  file = two_pipe.e
[]

[Problem]
  kernel_coverage_check = false
[]

[Variables]
  [u]
  []
[]


[AuxVariables]
  [./var]
    order = CONSTANT
    family = MONOMIAL
    block = p1
  [../]
[]

[ICs]
  [./var]
    type = FunctionIC
    variable = var
    function = setvar
    block = p1
  [../]
[]

[Functions]
  [./setvar]
    type = ParsedFunction
    value = '1 + z * z'
  [../]
[]

[UserObjects]
  [./sub_app_uo]
    type = LayeredAverage
    direction = z
    variable = var
    num_layers = 10
    execute_on = TIMESTEP_END
    block = p1
  [../]
[]

[Executioner]
  type = Transient
[]

test/tests/kernels/ode/ode_sys_impl_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
  elem_type = QUAD4
[]

[Functions]
  [./f_fn]
    type = ParsedFunction
    value = -4
  [../]
  [./bc_all_fn]
    type = ParsedFunction
    value = x*x+y*y
  [../]

  # ODEs
  [./exact_x_fn]
    type = ParsedFunction
    value = (-1/3)*exp(-t)+(4/3)*exp(5*t)
  [../]
[]

# NL

[Variables]
  [./u]
    family = LAGRANGE
    order = FIRST
  [../]

  # ODE variables
  [./x]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
  [./y]
    family = SCALAR
    order = FIRST
    initial_condition = 2
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./uff]
    type = BodyForce
    variable = u
    function = f_fn
  [../]
[]

[ScalarKernels]
  [./td1]
    type = ODETimeDerivative
    variable = x
  [../]
  [./ode1]
    type = ImplicitODEx
    variable = x
    y = y
  [../]

  [./td2]
    type = ODETimeDerivative
    variable = y
  [../]
  [./ode2]
    type = ImplicitODEy
    variable = y
    x = x
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = bc_all_fn
  [../]
[]

[Postprocessors]
  active = 'exact_x l2err_x x y'

  [./x]
    type = ScalarVariable
    variable = x
    execute_on = 'initial timestep_end'
  [../]
  [./y]
    type = ScalarVariable
    variable = y
    execute_on = 'initial timestep_end'
  [../]

  [./exact_x]
    type = FunctionValuePostprocessor
    function = exact_x_fn
    execute_on = 'initial timestep_end'
    point = '0 0 0'
  [../]

  [./l2err_x]
    type = ScalarL2Error
    variable = x
    function = exact_x_fn
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  dt = 0.01
  num_steps = 100

  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/planar_hard3.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# Both return to the edge (lode angle = 30deg, ie 010100) and tip are experienced.
#
# It is checked that the yield functions are less than their tolerance values
# It is checked that the cohesion hardens correctly

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.05E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if((a<1E-5)&(b<1E-5)&(c<1E-5)&(d<1E-5)&(g<1E-5)&(h<1E-5),0,abs(a)+abs(b)+abs(c)+abs(d)+abs(g)+abs(h))'
    vars = 'a b c d g h'
    vals = 'f0 f1 f2 f3 f4 f5'
  [../]
  [./coh_analytic]
    type = ParsedFunction
    value = '20-10*exp(-1E5*intnl)'
    vars = intnl
    vals = internal
  [../]
  [./coh_from_yieldfcns]
    type = ParsedFunction
    value = '(f0+f1-(sxx+syy)*sin(phi))/(-2)/cos(phi)'
    vars = 'f0 f1 sxx syy phi'
    vals = 'f0 f1 s_xx s_yy 0.8726646'
  [../]
  [./should_be_zero_coh]
    type = ParsedFunction
    value = 'if(abs(a-b)<1E-6,0,1E6*abs(a-b))'
    vars = 'a b'
    vals = 'Coh_analytic Coh_moose'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn5]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn0]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn0
  [../]
  [./yield_fcn1]
    type = MaterialStdVectorAux
    index = 1
    property = plastic_yield_function
    variable = yield_fcn1
  [../]
  [./yield_fcn2]
    type = MaterialStdVectorAux
    index = 2
    property = plastic_yield_function
    variable = yield_fcn2
  [../]
  [./yield_fcn3]
    type = MaterialStdVectorAux
    index = 3
    property = plastic_yield_function
    variable = yield_fcn3
  [../]
  [./yield_fcn4]
    type = MaterialStdVectorAux
    index = 4
    property = plastic_yield_function
    variable = yield_fcn4
  [../]
  [./yield_fcn5]
    type = MaterialStdVectorAux
    index = 5
    property = plastic_yield_function
    variable = yield_fcn5
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn2
  [../]
  [./f3]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn3
  [../]
  [./f4]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn4
  [../]
  [./f5]
   type = PointValue
    point = '0 0 0'
    variable = yield_fcn5
  [../]
  [./yfcns_should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
  [./Coh_analytic]
    type = FunctionValuePostprocessor
    function = coh_analytic
  [../]
  [./Coh_moose]
    type = FunctionValuePostprocessor
    function = coh_from_yieldfcns
  [../]
  [./cohesion_difference_should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_coh
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 10
    value_residual = 20
    rate = 1E5
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8726646
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 1 #0.8726646 # 50deg
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    yield_function_tolerance = 1E-5
    use_custom_returnMap = true
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = mc
  [../]
[]


[Executioner]
  end_time = 5
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar_hard3
  exodus = false
  [./csv]
    type = CSV
    hide = 'f0 f1 f2 f3 f4 f5 s_xy s_xz s_yz Coh_analytic Coh_moose'
    execute_on = 'timestep_end'
  [../]
[]

python/chigger/tests/simple/multiapps.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Problem]
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
[]

[MultiApps]
  [./sub]
    app_type = MooseTestApp
    type = TransientMultiApp
    input_files = sub.i
    output_in_position = true
    positions = '0 0 0
                 0 0 0.25
                 0 0 0.5
                 0 0 0.75
                 0 0 1'
  [../]
[]

test/tests/materials/stateful_prop/implicit_stateful.i

# This test checks that material properties are correctly implicitly be
# promoted to "stateful" when a stateful old or older value is requested for
# them even when the properties were never explicitly declared with old/older
# support.  So the ImplicitStateful material simply requests stateful
# old/older values from a generic constant material that doesn't declare its
# material property with old/older support.  This material adds the current
# simulation time to that to calculate its own material property. A second
# implicit stateful material requests the older value of the firsts stateful
# material - also not declared to support old/older as its material property
# value.  The sequence of material properties generated by the second implicit
# stateful material should be delayed by the first's by one time step.

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 10
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxVariables]
  [./prop1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./prop2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./prop1_output]
    type = MaterialRealAux
    variable = prop1
    property = s1
  [../]
  [./prop2_output]
    type = MaterialRealAux
    variable = prop2
    property = s2
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 'left'
    value = 1.0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 1.0
  [../]
[]

[Materials]
  [./mat]
    type = GenericConstantMaterial
    prop_names = 'a'
    prop_values = '.42'
  [../]
  [./stateful1]
    type = ImplicitStateful
    prop_name = 's1'
    coupled_prop_name = 'a'
    add_time = true
    older = false
  [../]
  [./stateful2]
    type = ImplicitStateful
    prop_name = 's2'
    coupled_prop_name = 's1'
    add_time = false
    older = false
  [../]
[]

[Postprocessors]
  [./integ1]
    type = ElementAverageValue
    variable = prop1
    execute_on = 'initial timestep_end'
  [../]
  [./integ2]
    type = ElementAverageValue
    variable = prop2
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  start_time = 0
  num_steps = 10
  dt = 1
[]

[Outputs]
  exodus = true
[]

test/tests/problems/external_problem/external_transient.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[Executioner]
  type = Transient
  num_steps = 5
[]

[Problem]
  type = DummyExternalProblem
[]

modules/porous_flow/test/tests/desorption/desorption02.i

# Illustrates desorption works as planned.
#
# A mesh contains 3 elements in arranged in a line.
# The central element contains desorped fluid.
# This desorps to the nodes of that element.
#
# In the central element, of volume V, the following occurs.
# The initial porepressure=1, and concentration=1.
# The initial mass of fluid is
# V * (2 * porosity * density + (1 - porosity) * concentration)
# = V * 1.289547
# Notice the factor of "2" in the porespace contribution:
# it is because the porepressure is evaluated at nodes, so
# the nodes on the exterior of the centre_block have
# nodal-volume contributions from the elements not in centre_block.
#
# The mass-conservation equation reads
# 2 * porosity * density + (1 - porosity) * concentration = 1.289547
# and the desorption equation reads
# d( (1-porosity)C )/dt = - (1/tau)(C - dens_L * P / (P_L + P))
# where C = concentration, P = porepressure, P_L = Langmuir pressure
# dens_L = Langmuir density, tau = time constant.
# Using the mass-conservation equation in the desorption equation
# yields a nonlinear equation of P.  For dt=1, and the numerical values
# given below this yields
# P = 1.83697
# and
# C = 0.676616
# The desired result is achieved by MOOSE
[Mesh]
  type = FileMesh
  file = three_eles.e
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./conc]
    family = MONOMIAL
    order = CONSTANT
    block = centre_block
  [../]
[]

[ICs]
  [./p_ic]
    type = ConstantIC
    variable = pp
    value = 1.0
  [../]
  [./conc_ic]
    type = ConstantIC
    variable = conc
    value = 1.0
    block = centre_block
  [../]
[]

[Kernels]
  [./porespace_mass_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./fluid_flow]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
     variable = pp
     gravity = '0 0 0'
  [../]
  [./desorped_mass_dot]
    type = PorousFlowDesorpedMassTimeDerivative
    block = centre_block
    conc_var = conc
    variable = pp
  [../]
  [./desorped_mass_dot_conc_var]
    type = PorousFlowDesorpedMassTimeDerivative
    block = centre_block
    conc_var = conc
    variable = conc
  [../]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    block = centre_block
    variable = conc
    pressure_var = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp conc'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      viscosity = 1
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./lang_stuff]
    type = LangmuirMaterial
    block = centre_block
    one_over_adsorption_time_const = 10.0
    one_over_desorption_time_const = 10.0
    langmuir_density = 1
    langmuir_pressure = 1
    pressure_var = pp
    conc_var = conc
  [../]

  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]

  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0 0 0  0 0 0  0 0 0'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityFLAC
    m = 1
    phase = 0
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/2d_moving_penetration/pl_test3tt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-10
  l_max_its = 10

  start_time = 0.0
  dt = 0.0125
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test3tt_out
  exodus = true
[]

test/tests/multiapps/picard/picard_rel_tol_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-12
  picard_max_its = 10
  picard_rel_tol = 1e-7
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = picard_sub.i
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

modules/richards/test/tests/jacobian_1/jn21.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true
# piecewiselinearflux = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 1
    [../]
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsHalfGaussianSink
    boundary = 'left right'
    max = 2E6
    sd = 0.7
    centre = 0.9
    variable = pressure
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn21
  exodus = false
[]

test/tests/multiapps/move_and_reset/multilevel_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '1 1 0'
    input_files = multilevel_sub.i
    output_in_position = true
    reset_apps = 0
    reset_time = 0.05
    move_time = 0.05
    move_positions = '2 2 0'
    move_apps = 0
  [../]
[]

test/tests/auxkernels/solution_aux/solution_aux_exodus_interp.i

[Mesh]
  type = FileMesh
  file = cubesource.e
  # This test uses SolutionUserObject which doesn't work with DistributedMesh.
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./nn]
    type = SolutionAux
    variable = nn
    solution = soln
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = cubesource.e
    system_variables = source_nodal
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'
  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 50
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/phase_field/test/tests/KKS_system/kks_multiphase.i

#
# This test is for the 3-phase KKS model
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  nz = 0
  xmin = 0
  xmax = 40
  ymin = 0
  ymax = 40
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[AuxVariables]
  [./Energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Variables]
  # concentration
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]

  # order parameter 1
  [./eta1]
    order = FIRST
    family = LAGRANGE
  [../]

  # order parameter 2
  [./eta2]
    order = FIRST
    family = LAGRANGE
  [../]

  # order parameter 3
  [./eta3]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]

  # phase concentration 1
  [./c1]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.2
  [../]

  # phase concentration 2
  [./c2]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.5
  [../]

  # phase concentration 3
  [./c3]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.8
  [../]

  # Lagrange multiplier
  [./lambda]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[ICs]
  [./eta1]
    variable = eta1
    type = SmoothCircleIC
    x1 = 20.0
    y1 = 20.0
    radius = 10
    invalue = 0.9
    outvalue = 0.1
    int_width = 4
  [../]
  [./eta2]
    variable = eta2
    type = SmoothCircleIC
    x1 = 20.0
    y1 = 20.0
    radius = 10
    invalue = 0.1
    outvalue = 0.9
    int_width = 4
  [../]
  [./c]
    variable = c
    type = SmoothCircleIC
    x1 = 20.0
    y1 = 20.0
    radius = 10
    invalue = 0.2
    outvalue = 0.5
    int_width = 2
  [../]
[]


[Materials]
  # simple toy free energies
  [./f1]
    type = DerivativeParsedMaterial
    f_name = F1
    args = 'c1'
    function = '20*(c1-0.2)^2'
  [../]
  [./f2]
    type = DerivativeParsedMaterial
    f_name = F2
    args = 'c2'
    function = '20*(c2-0.5)^2'
  [../]
  [./f3]
    type = DerivativeParsedMaterial
    f_name = F3
    args = 'c3'
    function = '20*(c3-0.8)^2'
  [../]

  # Switching functions for each phase
  # h1(eta1, eta2, eta3)
  [./h1]
    type = SwitchingFunction3PhaseMaterial
    eta_i = eta1
    eta_j = eta2
    eta_k = eta3
    f_name = h1
  [../]
  # h2(eta1, eta2, eta3)
  [./h2]
    type = SwitchingFunction3PhaseMaterial
    eta_i = eta2
    eta_j = eta3
    eta_k = eta1
    f_name = h2
  [../]
  # h3(eta1, eta2, eta3)
  [./h3]
    type = SwitchingFunction3PhaseMaterial
    eta_i = eta3
    eta_j = eta1
    eta_k = eta2
    f_name = h3
  [../]

  # Coefficients for diffusion equation
  [./Dh1]
    type = DerivativeParsedMaterial
    material_property_names = 'D h1'
    function = D*h1
    f_name = Dh1
  [../]
  [./Dh2]
    type = DerivativeParsedMaterial
    material_property_names = 'D h2'
    function = D*h2
    f_name = Dh2
  [../]
  [./Dh3]
    type = DerivativeParsedMaterial
    material_property_names = 'D h3'
    function = D*h3
    f_name = Dh3
  [../]

  # Barrier functions for each phase
  [./g1]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta1
    function_name = g1
  [../]
  [./g2]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta2
    function_name = g2
  [../]
  [./g3]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta3
    function_name = g3
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'L   kappa  D'
    prop_values = '0.7 1.0    1'
  [../]
[]

[Kernels]
  #Kernels for diffusion equation
  [./diff_time]
    type = TimeDerivative
    variable = c
  [../]
  [./diff_c1]
    type = MatDiffusion
    variable = c
    diffusivity = Dh1
    v = c1
  [../]
  [./diff_c2]
    type = MatDiffusion
    variable = c
    diffusivity = Dh2
    v = c2
  [../]
  [./diff_c3]
    type = MatDiffusion
    variable = c
    diffusivity = Dh3
    v = c3
  [../]

  # Kernels for Allen-Cahn equation for eta1
  [./deta1dt]
    type = TimeDerivative
    variable = eta1
  [../]
  [./ACBulkF1]
    type = KKSMultiACBulkF
    variable  = eta1
    Fj_names  = 'F1 F2 F3'
    hj_names  = 'h1 h2 h3'
    gi_name   = g1
    eta_i     = eta1
    wi        = 1.0
    args      = 'c1 c2 c3 eta2 eta3'
  [../]
  [./ACBulkC1]
    type = KKSMultiACBulkC
    variable  = eta1
    Fj_names  = 'F1 F2 F3'
    hj_names  = 'h1 h2 h3'
    cj_names  = 'c1 c2 c3'
    eta_i     = eta1
    args      = 'eta2 eta3'
  [../]
  [./ACInterface1]
    type = ACInterface
    variable = eta1
    kappa_name = kappa
  [../]
  [./multipler1]
    type = MatReaction
    variable = eta1
    v = lambda
    mob_name = L
  [../]

  # Kernels for Allen-Cahn equation for eta2
  [./deta2dt]
    type = TimeDerivative
    variable = eta2
  [../]
  [./ACBulkF2]
    type = KKSMultiACBulkF
    variable  = eta2
    Fj_names  = 'F1 F2 F3'
    hj_names  = 'h1 h2 h3'
    gi_name   = g2
    eta_i     = eta2
    wi        = 1.0
    args      = 'c1 c2 c3 eta1 eta3'
  [../]
  [./ACBulkC2]
    type = KKSMultiACBulkC
    variable  = eta2
    Fj_names  = 'F1 F2 F3'
    hj_names  = 'h1 h2 h3'
    cj_names  = 'c1 c2 c3'
    eta_i     = eta2
    args      = 'eta1 eta3'
  [../]
  [./ACInterface2]
    type = ACInterface
    variable = eta2
    kappa_name = kappa
  [../]
  [./multipler2]
    type = MatReaction
    variable = eta2
    v = lambda
    mob_name = L
  [../]

  # Kernels for the Lagrange multiplier equation
  [./mult_lambda]
    type = MatReaction
    variable = lambda
    mob_name = 3
  [../]
  [./mult_ACBulkF_1]
    type = KKSMultiACBulkF
    variable  = lambda
    Fj_names  = 'F1 F2 F3'
    hj_names  = 'h1 h2 h3'
    gi_name   = g1
    eta_i     = eta1
    wi        = 1.0
    mob_name  = 1
    args      = 'c1 c2 c3 eta2 eta3'
  [../]
  [./mult_ACBulkC_1]
    type = KKSMultiACBulkC
    variable  = lambda
    Fj_names  = 'F1 F2 F3'
    hj_names  = 'h1 h2 h3'
    cj_names  = 'c1 c2 c3'
    eta_i     = eta1
    args      = 'eta2 eta3'
    mob_name  = 1
  [../]
  [./mult_CoupledACint_1]
    type = SimpleCoupledACInterface
    variable = lambda
    v = eta1
    kappa_name = kappa
    mob_name = 1
  [../]
  [./mult_ACBulkF_2]
    type = KKSMultiACBulkF
    variable  = lambda
    Fj_names  = 'F1 F2 F3'
    hj_names  = 'h1 h2 h3'
    gi_name   = g2
    eta_i     = eta2
    wi        = 1.0
    mob_name  = 1
    args      = 'c1 c2 c3 eta1 eta3'
  [../]
  [./mult_ACBulkC_2]
    type = KKSMultiACBulkC
    variable  = lambda
    Fj_names  = 'F1 F2 F3'
    hj_names  = 'h1 h2 h3'
    cj_names  = 'c1 c2 c3'
    eta_i     = eta2
    args      = 'eta1 eta3'
    mob_name  = 1
  [../]
  [./mult_CoupledACint_2]
    type = SimpleCoupledACInterface
    variable = lambda
    v = eta2
    kappa_name = kappa
    mob_name = 1
  [../]
  [./mult_ACBulkF_3]
    type = KKSMultiACBulkF
    variable  = lambda
    Fj_names  = 'F1 F2 F3'
    hj_names  = 'h1 h2 h3'
    gi_name   = g3
    eta_i     = eta3
    wi        = 1.0
    mob_name  = 1
    args      = 'c1 c2 c3 eta1 eta2'
  [../]
  [./mult_ACBulkC_3]
    type = KKSMultiACBulkC
    variable  = lambda
    Fj_names  = 'F1 F2 F3'
    hj_names  = 'h1 h2 h3'
    cj_names  = 'c1 c2 c3'
    eta_i     = eta3
    args      = 'eta1 eta2'
    mob_name  = 1
  [../]
  [./mult_CoupledACint_3]
    type = SimpleCoupledACInterface
    variable = lambda
    v = eta3
    kappa_name = kappa
    mob_name = 1
  [../]

  # Kernels for constraint equation eta1 + eta2 + eta3 = 1
  # eta3 is the nonlinear variable for the constraint equation
  [./eta3reaction]
    type = MatReaction
    variable = eta3
    mob_name = 1
  [../]
  [./eta1reaction]
    type = MatReaction
    variable = eta3
    v = eta1
    mob_name = 1
  [../]
  [./eta2reaction]
    type = MatReaction
    variable = eta3
    v = eta2
    mob_name = 1
  [../]
  [./one]
    type = BodyForce
    variable = eta3
    value = -1.0
  [../]

  # Phase concentration constraints
  [./chempot12]
    type = KKSPhaseChemicalPotential
    variable = c1
    cb       = c2
    fa_name  = F1
    fb_name  = F2
  [../]
  [./chempot23]
    type = KKSPhaseChemicalPotential
    variable = c2
    cb       = c3
    fa_name  = F2
    fb_name  = F3
  [../]
  [./phaseconcentration]
    type = KKSMultiPhaseConcentration
    variable = c3
    cj = 'c1 c2 c3'
    hj_names = 'h1 h2 h3'
    etas = 'eta1 eta2 eta3'
    c = c
  [../]
[]

[AuxKernels]
  [./Energy_total]
    type = KKSMultiFreeEnergy
    Fj_names = 'F1 F2 F3'
    hj_names = 'h1 h2 h3'
    gj_names = 'g1 g2 g3'
    variable = Energy
    w = 1
    interfacial_vars =  'eta1  eta2  eta3'
    kappa_names =       'kappa kappa kappa'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       ilu            nonzero'
  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-11

  num_steps = 2
  dt = 0.5
[]

[Preconditioning]
  active = 'full'
  [./full]
    type = SMP
    full = true
  [../]
  [./mydebug]
    type = FDP
    full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/inclined_bc/inclined_bc_action.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 2
    ny = 4
    nz = 2
    xmin = 0.0
    xmax = 1.0
    ymin = 0.0
    ymax = 2.0
    zmin = 0.0
    zmax = 1.0
    elem_type = HEX8
  []
  [rotate]
    type = TransformGenerator
    transform = ROTATE
    vector_value = '0 -20 -60'
    input = generated_mesh
  []
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  add_variables = true
[]

[BCs]
  [./Pressure]
    [./top]
      boundary = top
      function = '-1000*t'
    [../]
  [../]
  [./InclinedNoDisplacementBC]
    [./right]
      boundary = right
      penalty = 1.0e8
      displacements = 'disp_x disp_y disp_z'
    [../]
    [./bottom]
      boundary = bottom
      penalty = 1.0e8
      displacements = 'disp_x disp_y disp_z'
    [../]
    [./back]
      boundary = back
      penalty = 1.0e8
      displacements = 'disp_x disp_y disp_z'
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  # controls for linear iterations
  l_max_its = 10
  l_tol = 1e-4

  # controls for nonlinear iterations
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-12

  # time control
  start_time = 0.0
  dt = 1
  end_time = 5
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  file_base = 'inclined_bc_3d_out'
  exodus = true
[]

modules/functional_expansion_tools/test/tests/errors/multiapp_bad_user_object.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = Diffusion
    variable = m
  [../]
  [./time_diff_m]
    type = TimeDerivative
    variable = m
  [../]
  [./s_in]
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'left right'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
  [./AnotheruserObject]
    type = EmptyPostprocessor
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = multiapp_sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = AnotheruserObject
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

modules/richards/test/tests/pressure_pulse/pp22.i

# investigating pressure pulse in 1D with 2 phase
# transient

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E3
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E3
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[ICs]
  [./water_ic]
    type = ConstantIC
    value = 2E6
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2E6
    variable = pgas
  [../]
[]


[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pwater
  [../]
  [./left_gas]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pgas
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas pconstraint'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
  [./pconstraint]
    type = RichardsPPenalty
    variable = pgas
    a = 1E-8
    lower_var = pwater
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 1E-5'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-pc_factor_shift_type'
    petsc_options_value = 'nonzero'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  dtmin = 1E3
  nl_rel_tol=1.e-10
  nl_max_its=20
  end_time = 1E4
[]

[Outputs]
  file_base = pp22
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

modules/tensor_mechanics/test/tests/tensile/random_planar.i

# Plasticity models:
# Planar tensile with strength = 1MPa
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 1250
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1250
  zmin = 0
  zmax = 1
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./tot_iters]
    type = ElementIntegralMaterialProperty
    mat_prop = plastic_NR_iterations
    outputs = console
  [../]
  [./raw_f0]
    type = ElementExtremeValue
    variable = f0
    outputs = console
  [../]
  [./raw_f1]
    type = ElementExtremeValue
    variable = f1
    outputs = console
  [../]
  [./raw_f2]
    type = ElementExtremeValue
    variable = f2
    outputs = console
  [../]
  [./iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./f0]
    type = FunctionValuePostprocessor
    function = should_be_zero0_fcn
  [../]
  [./f1]
    type = FunctionValuePostprocessor
    function = should_be_zero1_fcn
  [../]
  [./f2]
    type = FunctionValuePostprocessor
    function = should_be_zero2_fcn
  [../]
[]

[Functions]
  [./should_be_zero0_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f0'
  [../]
  [./should_be_zero1_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f1'
  [../]
  [./should_be_zero2_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f2'
  [../]
[]

[UserObjects]
  [./hard]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E6
    value_residual = 0
    internal_limit = 1
  [../]
  [./tensile]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = hard
    yield_function_tolerance = 1.0E-1
    shift = 1.0E-1
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 1.3E9'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    deactivation_scheme = 'safe_to_dumb'
    ep_plastic_tolerance = 1E-7
    plastic_models = 'tensile'
    max_NR_iterations = 5
    min_stepsize = 1E-3
    max_stepsize_for_dumb = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1'
    debug_jac_at_intnl = '1 1 1'
    debug_stress_change = 1E1
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random_planar
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/heat_conduction/test/tests/recover/ad_recover.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = recover_in.e
[]

[Variables]
  [./temp]
    initial_condition = 580.0
  [../]
[]

[AuxVariables]
  [./gap_cond]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = ADHeatConduction
    variable = temp
  [../]
  [./heat_source]
    type = ADMatHeatSource
    material_property = volumetric_heat
    variable = temp
    scalar = 1e3
    block = pellet_type_1
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 5
    slave = 10
    quadrature = true
  [../]
[]

[BCs]
  [./outside]
    type = DirichletBC
    value = 580
    boundary = '1 2 3'
    variable = temp
  [../]
  [./edge]
    type = DirichletBC
    value = 700
    boundary = 10
    variable = temp
  [../]
[]

[Materials]
  [./volumetric_heat]
    type = GenericFunctionMaterial
    prop_names = 'volumetric_heat'
    prop_values = 't'
  [../]
  [./thermal_3]
    type = HeatConductionMaterial
    block = 3
    thermal_conductivity = 5
    specific_heat = 12
  [../]
  [./thermal_1]
    type = HeatConductionMaterial
    block = 1
    thermal_conductivity = 16.0
    specific_heat = 330.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = ' lu       superlu_dist'

  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-11

  start_time = -200
  n_startup_steps = 1
  end_time = 1.02e5
  num_steps = 10

  dtmax = 2e6
  dtmin = 1

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 2.0e2
    optimal_iterations = 15
    iteration_window = 2
  [../]

  [./Quadrature]
    order = FIFTH
    side_order = SEVENTH
  [../]
[]

[Postprocessors]
  [./ave_temp_interior]
     type = SideAverageValue
     boundary = 9
     variable = temp
     execute_on = 'initial linear'
  [../]
  [./avg_clad_temp]
    type = SideAverageValue
    boundary = 7
    variable = temp
    execute_on = 'initial timestep_end'
  [../]
  [./flux_from_clad]
    type = SideFluxIntegral
    variable = temp
    boundary = 5
    diffusivity = thermal_conductivity
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/gravity_head_2/gh_lumped_07.i

# unsaturated = true
# gravity = false
# supg = true
# transient = true
# lumped = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 0.5E-3'
  gravity = '0 0 0'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-3
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-3
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = RandomIC
    min = 0.2
    max = 0.8
    variable = pwater
  [../]
  [./gas_ic]
    type = RandomIC
    min = 1.2
    max = 1.8
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((p0-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((p0-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-13 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh_lumped_07
  csv = true
[]

modules/tensor_mechanics/test/tests/material_limit_time_step/damage/scalar_material_damage_timestep_limit.i

# This is a basic test of the system for continuum damage mechanics
# materials. It uses ScalarMaterialDamage for the damage model,
# which simply gets its damage index from another material. In this
# case, we prescribe the evolution of the damage index using a
# function. A single element has a fixed prescribed displacement
# on one side that puts the element in tension, and then the
# damage index evolves from 0 to 1 over time, and this verifies
# that the stress correspondingly drops to 0.

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
[]

[AuxVariables]
  [damage_index]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[Modules/TensorMechanics/Master]
  [all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_xx strain_xx'
  []
[]

[AuxKernels]
  [damage_index]
    type = MaterialRealAux
    variable = damage_index
    property = damage_index_prop
    execute_on = timestep_end
  []
[]

[BCs]
  [symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  []
  [symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  []
  [symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  []
  [axial_load]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.01
  []
[]

[Functions]
  [damage_evolution]
    type = PiecewiseLinear
    xy_data = '0.0   0.0
               0.1   0.0
               2.1   2.0'
  []
[]

[Materials]
  [damage_index]
    type = GenericFunctionMaterial
    prop_names = damage_index_prop
    prop_values = damage_evolution
  []
  [damage]
    type = ScalarMaterialDamage
    damage_index = damage_index_prop
  []
  [stress]
    type = ComputeDamageStress
    damage_model = damage
  []
  [elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.2
    youngs_modulus = 10e9
  []
[]

[Postprocessors]
  [stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  []
  [strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  []
  [damage_index]
    type = ElementAverageValue
    variable = damage_index
  []
  [time_step_limit]
    type = MaterialTimeStepPostprocessor
  []
[]

[Executioner]
  type = Transient

  l_max_its  = 50
  l_tol      = 1e-8
  nl_max_its = 20
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-8

  dt = 0.1
  dtmin = 0.001
  end_time = 1.1
  [TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.1
    growth_factor = 2.0
    cutback_factor = 0.5
    timestep_limiting_postprocessor = time_step_limit
  []
[]

[Outputs]
  csv=true
[]

modules/phase_field/test/tests/grain_tracker_test/grain_tracker_volume_changing.i

# This simulation predicts GB migration of a 2D copper polycrystal with 100 grains represented with 18 order parameters
# Mesh adaptivity and time step adaptivity are used
# An AuxVariable is used to calculate the grain boundary locations
# Postprocessors are used to record time step and the number of grains

[Mesh]
  # Mesh block.  Meshes can be read in or automatically generated
  type = GeneratedMesh
  dim = 2 # Problem dimension
  nx = 12 # Number of elements in the x-direction
  ny = 12 # Number of elements in the y-direction
  xmax = 1000 # maximum x-coordinate of the mesh
  ymax = 1000 # maximum y-coordinate of the mesh
  elem_type = QUAD4 # Type of elements used in the mesh
  uniform_refine = 1 # Initial uniform refinement of the mesh
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = 8 # Number of order parameters used
  var_name_base = gr # Base name of grains
  order = CONSTANT
  family = MONOMIAL
[]

[Variables]
  # Variable block, where all variables in the simulation are declared
  [./PolycrystalVariables]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    grain_num = 12 # Number of grains
    coloring_algorithm = jp
    rand_seed = 15
    output_adjacency_matrix = true
  [../]
  [./grain_tracker]
    type = GrainTracker
    threshold = 0.2
    verbosity_level = 1
    connecting_threshold = 0.08
    compute_var_to_feature_map = true
    compute_halo_maps = true # For displaying HALO fields
    polycrystal_ic_uo = voronoi
    execute_on = 'initial timestep_end'
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  # Dependent variables
  [./bnds]
    # Variable used to visualize the grain boundaries in the simulation
    order = FIRST
    family = LAGRANGE
  [../]

  [./unique_grains]
  [../]

  [./var_indices]
  [../]

  [./ghost_regions]
  [../]

  [./halos]
  [../]

  [./halo0]
  [../]

  [./halo1]
  [../]

  [./halo2]
  [../]

  [./halo3]
  [../]

  [./halo4]
  [../]

  [./halo5]
  [../]

  [./halo6]
  [../]

  [./halo7]
  [../]

  [./centroids]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  # Kernel block, where the kernels defining the residual equations are set up.
  [./PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  [../]
[]

[AuxKernels]
  # AuxKernel block, defining the equations used to calculate the auxvars
  [./bnds_aux]
    # AuxKernel that calculates the GB term
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
    execute_on = 'initial timestep_end'
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
    execute_on = 'initial timestep_end'
  [../]
  [./ghosted_entities]
    type = FeatureFloodCountAux
    variable = ghost_regions
    flood_counter = grain_tracker
    field_display = GHOSTED_ENTITIES
    execute_on = 'initial timestep_end'
  [../]
  [./halos]
    type = FeatureFloodCountAux
    variable = halos
    flood_counter = grain_tracker
    field_display = HALOS
    execute_on = 'initial timestep_end'
  [../]
  [./halo0]
    type = FeatureFloodCountAux
    variable = halo0
    map_index = 0
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo1]
    type = FeatureFloodCountAux
    variable = halo1
    map_index = 1
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo2]
    type = FeatureFloodCountAux
    variable = halo2
    map_index = 2
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo3]
    type = FeatureFloodCountAux
    variable = halo3
    map_index = 3
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo4]
    type = FeatureFloodCountAux
    variable = halo4
    map_index = 4
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo5]
    type = FeatureFloodCountAux
    variable = halo5
    map_index = 5
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo6]
    type = FeatureFloodCountAux
    variable = halo6
    map_index = 6
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo7]
    type = FeatureFloodCountAux
    variable = halo7
    map_index = 7
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./centroids]
    type = FeatureFloodCountAux
    variable = centroids
    execute_on = timestep_end
    field_display = CENTROID
    flood_counter = grain_tracker
  [../]
[]

[BCs]
  # Boundary Condition block
[]

[Materials]
  [./CuGrGr]
    # Material properties
    type = GBEvolution
    T = 450 # Constant temperature of the simulation (for mobility calculation)
    wGB = 125 # Width of the diffuse GB
    GBmob0 = 2.5e-6 # m^4(Js) for copper from Schoenfelder1997
    Q = 0.23 # eV for copper from Schoenfelder1997
    GBenergy = 0.708 # J/m^2 from Schoenfelder1997
  [../]
[]

[Postprocessors]
  # Scalar postprocessors
  [./dt]
    # Outputs the current time step
    type = TimestepSize
  [../]
  [./avg_grain_volumes]
    type = AverageGrainVolume
    feature_counter = grain_tracker
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  # Uses newton iteration to solve the problem.
  type = Transient # Type of executioner, here it is transient with an adaptive time step
  scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 101 ds'
  l_max_its = 30 # Max number of linear iterations
  l_tol = 1e-4 # Relative tolerance for linear solves
  nl_max_its = 40 # Max number of nonlinear iterations
  nl_rel_tol = 1e-10 # Absolute tolerance for nonlienar solves
  start_time = 0.0
  num_steps = 15
  dt = 300
[]

[Problem]
  type = FEProblem
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/combined_creep_plasticity/combined_stress_relaxation.i

#
# 1x1x1 unit cube with constant displacement on top face
#
# This problem was taken from "Finite element three-dimensional elastic-plastic
#    creep analysis" by A. Levy, Eng. Struct., 1981, Vol. 3, January, pp. 9-16.
#
# The problem is a one-dimensional creep analysis.  The top face is displaced 0.01
#    units and held there.  The stress relaxes in time according to the creep law.
#
# The analytic solution to this problem is (contrary to what is shown in the paper):
#
#                 /      (E*ef)^3      \^(1/3)
#    stress_yy = |---------------------|
#                \ 3*a*E^4*ef^3*t + 1 /
#
#    where E  = 2.0e11  (Young's modulus)
#          a  = 3e-26  (creep coefficient)
#          ef = 0.01   (displacement)
#          t  = 2160.0    (time)
#
#    such that the analytical solution is computed to be 2.9518e3 Pa
#
# Averaged over the single element block, MOOSE calculates the stress in the yy direction to be
#     to be 3.046e3 Pa, which is a 3.2% error from the analytical solution.
#

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1e-2 1e-1 1e0 1e1 1e2'
    x = '0    7e-1 7e0 7e1 1e2'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy creep_strain_xx creep_strain_yy creep_strain_zz elastic_strain_yy'
  [../]
[]

[BCs]
  [./u_top_pull]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.01
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.0e11
    poissons_ratio = 0.3
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    tangent_operator = elastic
    inelastic_models = 'power_law_creep'
  [../]
  [./power_law_creep]
    type = PowerLawCreepStressUpdate
    coefficient = 3.0e-26
    n_exponent = 4
    activation_energy = 0.0
    relative_tolerance = 1e-14
    absolute_tolerance = 1e-14
  [../]
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-5
  nl_abs_tol = 1e-8
  l_tol = 1e-5
  start_time = 0.0
  end_time = 2160

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/homogenization/anisoLongFiber.i

#
# Test from:
#   Multiple Scale Analysis of Heterogeneous Elastic Structures Using
#   Homogenization Theory and Voronoi Cell Finite Element Method
#   by S.Ghosh et. al, Int J. Solids Structures, Vol. 32, No. 1,
#   pp. 27-62, 1995.
#
# From that paper, elastic constants should be:
# E1111: 136.1
# E2222: 245.8
# E1212:  46.85
# E1122:  36.08
#
# Note: this is for plane stress conditions
#

[Mesh]
  file = anisoLongFiber.e
[]

[Variables]
  [./dx_xx]
    order = FIRST
    family = LAGRANGE
  [../]
  [./dy_xx]
    order = FIRST
    family = LAGRANGE
  [../]

  [./dx_yy]
    order = FIRST
    family = LAGRANGE
  [../]
  [./dy_yy]
    order = FIRST
    family = LAGRANGE
  [../]

  [./dx_xy]
    order = FIRST
    family = LAGRANGE
  [../]
  [./dy_xy]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[Kernels]

  [./div_x_xx]
    type = StressDivergenceTensors
    component = 0
    variable = dx_xx
    displacements = 'dx_xx dy_xx'
    use_displaced_mesh = false
    base_name = xx
  [../]
  [./div_y_xx]
    type = StressDivergenceTensors
    component = 1
    variable = dy_xx
    displacements = 'dx_xx dy_xx'
    use_displaced_mesh = false
    base_name = xx
  [../]
  [./div_x_yy]
    type = StressDivergenceTensors
    component = 0
    variable = dx_yy
    displacements = 'dx_yy dy_yy'
    use_displaced_mesh = false
    base_name = yy
  [../]
  [./div_y_yy]
    type = StressDivergenceTensors
    component = 1
    variable = dy_yy
    displacements = 'dx_yy dy_yy'
    use_displaced_mesh = false
    base_name = yy
  [../]
  [./div_x_xy]
    type = StressDivergenceTensors
    component = 0
    variable = dx_xy
    displacements = 'dx_xy dy_xy'
    use_displaced_mesh = false
    base_name = xy
  [../]
  [./div_y_xy]
    type = StressDivergenceTensors
    component = 1
    variable = dy_xy
    displacements = 'dx_xy dy_xy'
    use_displaced_mesh = false
    base_name = xy
  [../]

  [./homo_dx_xx]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dx_xx
    component = 0
    column = xx
    base_name = xx
  [../]
  [./homo_dy_xx]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dy_xx
    component = 1
    column = xx
    base_name = xx
  [../]

  [./homo_dx_yy]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dx_yy
    component = 0
    column = yy
    base_name = yy
  [../]
  [./homo_dy_yy]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dy_yy
    component = 1
    column = yy
    base_name = yy
  [../]

  [./homo_dx_xy]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dx_xy
    component = 0
    column = xy
    base_name = xy
  [../]
  [./homo_dy_xy]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dy_xy
    component = 1
    column = xy
    base_name = xy
  [../]
[]

[BCs]

  [./Periodic]
    [./top_bottom]
      primary = 30
      secondary = 40
      translation = '0 1 0'
    [../]

    [./left_right]
      primary = 10
      secondary = 20
      translation = '1 0 0'
    [../]
  [../]

  [./dx_xx_anchor]
    type = DirichletBC
    variable = dx_xx
    boundary = 1
    value = 0.0
  [../]

  [./dy_xx_anchor]
    type = DirichletBC
    variable = dy_xx
    boundary = 1
    value = 0.0
  [../]

  [./dx_yy_anchor]
    type = DirichletBC
    variable = dx_yy
    boundary = 1
    value = 0.0
  [../]

  [./dy_yy_anchor]
    type = DirichletBC
    variable = dy_yy
    boundary = 1
    value = 0.0
  [../]

  [./dx_xy_anchor]
    type = DirichletBC
    variable = dx_xy
    boundary = 1
    value = 0.0
  [../]

  [./dy_xy_anchor]
    type = DirichletBC
    variable = dy_xy
    boundary = 1
    value = 0.0
  [../]
[]

[Materials]

  [./elastic_stress_xx]
    type = ComputeLinearElasticStress
    base_name = xx
  [../]
  [./elastic_stress_yy]
    type = ComputeLinearElasticStress
    base_name = yy
  [../]
  [./elastic_stress_xy]
    type = ComputeLinearElasticStress
    base_name = xy
  [../]
  [./strain_xx]
    type = ComputeSmallStrain
    displacements = 'dx_xx dy_xx'
    base_name = xx
  [../]
  [./strain_yy]
    type = ComputeSmallStrain
    displacements = 'dx_yy dy_yy'
    base_name = yy
  [../]
  [./strain_xy]
    type = ComputeSmallStrain
    displacements = 'dx_xy dy_xy'
    base_name = xy
  [../]


  [./block1]
    type =  ComputeElasticityTensor
    block = 1
    fill_method = symmetric9
    C_ijkl = '81.360117 26.848839 26.848839 81.360117 26.848839 81.360117 27.255639 27.255639 27.255639'
    base_name = xx
  [../]

  [./block2]
    type =  ComputeElasticityTensor
    block = 1
    fill_method = symmetric9
    C_ijkl = '81.360117 26.848839 26.848839 81.360117 26.848839 81.360117 27.255639 27.255639 27.255639'
    base_name = yy
  [../]

  [./block3]
    type =  ComputeElasticityTensor
    block = 1
    fill_method = symmetric9
    C_ijkl = '81.360117 26.848839 26.848839 81.360117 26.848839 81.360117 27.255639 27.255639 27.255639'
    base_name = xy
  [../]

  [./block4]
    type =  ComputeElasticityTensor
    block = 2
    fill_method = symmetric9
    C_ijkl = '416.66667 83.33333 83.33333 416.6667 83.33333 416.66667 166.66667 166.66667 166.66667'
    base_name = xx
  [../]

  [./block5]
    type =  ComputeElasticityTensor
    block = 2
    fill_method = symmetric9
    C_ijkl = '416.66667 83.33333 83.33333 416.6667 83.33333 416.66667 166.66667 166.66667 166.66667'
    base_name = yy
  [../]

  [./block6]
    type =  ComputeElasticityTensor
    block = 2
    fill_method = symmetric9
    C_ijkl = '416.66667 83.33333 83.33333 416.6667 83.33333 416.66667 166.66667 166.66667 166.66667'
    base_name = xy
 [../]

[]

[Postprocessors]

  [./E1111]
    type = AsymptoticExpansionHomogenizationElasticConstants
    base_name = xx
    row = xx
    column = xx
    dx_xx = dx_xx
    dy_xx = dy_xx
    dx_yy = dx_yy
    dy_yy = dy_yy
    dx_xy = dx_xy
    dy_xy = dy_xy
    execute_on = 'initial timestep_end'
  [../]

  [./E2222]
    type = AsymptoticExpansionHomogenizationElasticConstants
    base_name = xx
    row = yy
    column = yy
    dx_xx = dx_xx
    dy_xx = dy_xx
    dx_yy = dx_yy
    dy_yy = dy_yy
    dx_xy = dx_xy
    dy_xy = dy_xy
    execute_on = 'initial timestep_end'
  [../]

  [./E1122]
    type = AsymptoticExpansionHomogenizationElasticConstants
    base_name = xx
    row = xx
    column = yy
    dx_xx = dx_xx
    dy_xx = dy_xx
    dx_yy = dx_yy
    dy_yy = dy_yy
    dx_xy = dx_xy
    dy_xy = dy_xy
    execute_on = 'initial timestep_end'
  [../]


  [./E2211]
    type = AsymptoticExpansionHomogenizationElasticConstants
    base_name = xx
    row = yy
    column = xx
    dx_xx = dx_xx
    dy_xx = dy_xx
    dx_yy = dx_yy
    dy_yy = dy_yy
    dx_xy = dx_xy
    dy_xy = dy_xy
    execute_on = 'initial timestep_end'
  [../]


  [./E1212]
    type = AsymptoticExpansionHomogenizationElasticConstants
    base_name = xx
    row = xy
    column = xy
    dx_xx = dx_xx
    dy_xx = dy_xx
    dx_yy = dx_yy
    dy_yy = dy_yy
    dx_xy = dx_xy
    dy_xy = dy_xy
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
   full = true
  [../]
[]


[Executioner]

  type = Transient

  solve_type = 'PJFNK'

  petsc_options = '-ksp_gmres_modifiedgramschmidt'
  petsc_options_iname = '-ksp_gmres_restart -pc_type   -pc_hypre_type -pc_hypre_boomeramg_max_iter -pc_hypre_boomeramg_grid_sweeps_all -ksp_type -mat_mffd_type'
  petsc_options_value = '201                 hypre       boomeramg      2                            2                                   fgmres    ds'

  line_search = 'none'


  l_tol = 1e-4
  l_max_its = 40
  nl_max_its = 40
  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-10

  start_time = 0.0
  end_time = 10.0
  num_steps = 1
  dt = 10

[]


[Outputs]
  exodus = true
  csv = true
[]

modules/combined/test/tests/contact/sm/4ElemTensionRelease_mechanical_constraint_sm.i

# This is a mechanical constraint (contact formulation) version of 4ElemTensionRelease.i
[Mesh]
  file = 4ElemTensionRelease.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1      2 3'
    y = '0 0.0001 0 -.0001'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = frictionless
    tangential_tolerance = 0.01
    system = constraint
  [../]
[]

[BCs]
  [./lateral]
    type = DirichletBC
    variable = disp_x
    boundary = '1 4'
    value = 0
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = up
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    block = 2

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 10
  dt = 0.2
  dtmin = 0.2
  end_time = 3

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/sm/frictionless_penalty_contact_line_search_sm.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2. The gold file is run
#  on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
  [./tot_nonlin_it]
    type = CumulativeValuePostprocessor
    postprocessor = nonlinear_its
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-ksp_monitor_true_residual'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'contact'
  contact_line_search_ltol = .5
  contact_line_search_allowed_lambda_cuts = 0

  l_max_its = 100
  nl_max_its = 20
  dt = 0.1
  end_time = 3
  # num_steps = 30
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01
[]

[Outputs]
  perf_graph = true
  print_linear_residuals = false
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

test/tests/controls/time_periods/bcs/bcs_integrated.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./right2]
    type = FunctionNeumannBC
    variable = u
    boundary = right
    function = (y*(t-1))+1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Controls]
  [./period0]
    type = TimePeriod
    disable_objects = 'BCs::right2'
    start_time = '0'
    end_time = '0.95'
    execute_on = 'initial timestep_begin'
  [../]

  [./period2]
    type = TimePeriod
    disable_objects = 'BCs::right'
    start_time = '1'
    execute_on = 'initial timestep_begin'
  [../]
[]

modules/tensor_mechanics/test/tests/ad_finite_strain_jacobian/bending_jacobian.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 10
    ymin = 0
    ymax = 2
    nx = 10
    ny = 2
    elem_type = QUAD4
  []
  [corner]
    type = ExtraNodesetGenerator
    new_boundary = 101
    coord = '0 0'
    input = generated_mesh
  []
  [side]
    type = ExtraNodesetGenerator
    new_boundary = 102
    coord = '10 0'
    input = corner
  []
  [mid]
    type = ExtraNodesetGenerator
    new_boundary = 103
    coord = '5 2'
    input = side
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    use_finite_deform_jacobian = true
    volumetric_locking_correction = false
    use_automatic_differentiation = true
  [../]
[]

[Materials]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric9
    C_ijkl = '1.684e5 0.176e5 0.176e5 1.684e5 0.176e5 1.684e5 0.754e5 0.754e5 0.754e5'
  [../]
[]

[BCs]
 [./fix_corner_x]
   type = ADDirichletBC
   variable = disp_x
   boundary = 101
   value = 0
 [../]
 [./fix_corner_y]
   type = ADDirichletBC
   variable = disp_y
   boundary = 101
   value = 0
 [../]
 [./fix_y]
   type = ADDirichletBC
   variable = disp_y
   boundary = 102
   value = 0
 [../]
 [./move_y]
   type = ADFunctionDirichletBC
   variable = disp_y
   boundary = 103
   function = '-t'
 [../]
[]

[Executioner]
  type = Transient

  solve_type = NEWTON
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_max_its = 10

  l_tol  = 1e-4
  l_max_its = 50

  dt = 0.1
  dtmin = 0.1

  num_steps = 2
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/phase_field_kernels/AllenCahn.i

#
# Test the parsed function free enery Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 12
  ymax = 12
  elem_type = QUAD4
[]

[Variables]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0.0
      y1 = 0.0
      radius = 6.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 3.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]

  [./ACBulk]
    type = AllenCahn
    variable = eta
    f_name = F
  [../]

  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = 1
    variable_L = false
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'L'
    prop_values = '1'
  [../]

  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta'
    function = '2 * eta^2 * (1-eta)^2 - 0.2*eta'
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'
  num_steps = 2
  dt = 0.5
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/multilevel/dt_from_sub_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0 0.5 0.5 0'
    input_files = dt_from_sub_sub.i
  [../]
[]

test/tests/postprocessors/avg_nodal_var_value/avg_nodal_var_value.i

[Mesh]
  file = square-2x2-nodeids.e
[]

[Variables]
  active = 'u v'

  [./u]
    order = SECOND
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Functions]
  active = 'force_fn exact_fn left_bc'

  [./force_fn]
    type = ParsedFunction
    value = '1-x*x+2*t'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = '(1-x*x)*t'
  [../]

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = '
    time_u diff_u ffn_u
    time_v diff_v'

  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'all_u left_v right_v'

  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = exact_fn
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '2'
    value = 0
  [../]
[]

[Postprocessors]
  [./l2]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./node1]
    type = AverageNodalVariableValue
    variable = u
    boundary = 10
  [../]

  [./node4]
    type = AverageNodalVariableValue
    variable = v
    boundary = 13
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_avg_nodal_var_value
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/HHT_time_integrator/sm/one_element_b_0_3025_g_0_6_cubic_sm.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = false
[]
[Mesh]
  file = one_element.e
#  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

[]

[AuxVariables]
  [./vel_x]
  [../]
  [./vel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_x]
  [../]
  [./accel_y]
  [../]
  [./accel_z]
  [../]
#  [./saved_x]
#  [../]
#  [./saved_y]
#  [../]
#  [./saved_z]
#  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
#    save_in_disp_x = saved_x
#    save_in_disp_y = saved_y
#    save_in_disp_z = saved_z
  [../]
[]

[Kernels]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.3025
    gamma = 0.6
#    save_in = saved_x
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.3025
    gamma = 0.6
#    save_in = saved_y
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.3025
    gamma = 0.6
#    save_in = saved_z
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.6
    execute_on = timestep_end
  [../]
[]


[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]

  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = pull
  [../]

[]

[Materials]

  [./constant]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    youngs_modulus = 1.26e6
    poissons_ratio = .33
    thermal_expansion = 1e-5
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 1
    prop_names = 'density'
    prop_values = '0.00023832'
  [../]

[]

[Executioner]
#  type = Transient
#  #Preconditioned JFNK (default)
#  solve_type = 'PJFNK'
#  nl_rel_tol = 1e-10
#  l_tol = 1e-3
#  l_max_its = 100
#  dt = 2e-6
#  end_time = 2e-5

  type = Transient
  # PETSC options
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'
  line_search = 'none'
  # controls for linear iterations
#  l_max_its = 80
#  l_tol = 8e-3
  # controls for nonlinear iterations
#  nl_max_its = 10
#  nl_rel_tol = 1e-4
#  nl_abs_tol = 1e-7
  # time control
  # Time steps set up to match halden data
  start_time = 0
  end_time = 1
#  num_steps = 5000
  dtmax = 0.1
  dtmin = 0.1
  # control for adaptive time steping
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
#    optimal_iterations = 12
#    linear_iteration_ratio = 100
#    time_t  = '-100 0' # direct control of time steps vs time (optional)
#    time_dt = '100  900'
  [../]

#  [./Quadrature]
#    order = THIRD
#  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0.0 0.1      0.2     0.3    0.4        0.5      0.6   0.7      0.8    0.9    1.0'
    y = '0.0 0.000167 0.00133 0.0045 0.010667   0.020833 0.036 0.057167 0.0853 0.1215 0.16667'
    scale_factor = 1
#    type = PiecewiseLinear
#    data_file = wave_one_element.csv
#    format = columns
  [../]
[]

[Postprocessors]
#  [./ref_resid_x]
#    type = NodalL2Norm
#    execute_on = timestep_end
#    variable = saved_x
#  [../]
#  [./ref_resid_y]
#    type = NodalL2Norm
#    execute_on = timestep_end
#    variable = saved_y
#  [../]
#  [./ref_resid_z]
#    type = NodalL2Norm
#    execute_on = timestep_end
#    variable = saved_z
#  [../]
#  [./nonlinear_its]
#    type = NumNonlinearIterations
#  []
   [./_dt]
     type = TimestepSize
   [../]
   [./nonlinear_its]
     type = NumNonlinearIterations
#   [../]
#     [./disp_8]
#     type =
   [../]

[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_postprocessor_interpolation_transfer/master_quad.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./pp_aux]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./quad]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0.1 0.1 0 0.9 0.1 0 0.1 0.9 0 0.9 0.9 0'
    input_files = 'quad_sub1.i quad_sub1.i quad_sub2.i quad_sub2.i'
  [../]
[]

[Transfers]
  [./sub_to_master_pp]
    type = MultiAppPostprocessorInterpolationTransfer
    direction = from_multiapp
    multi_app = quad
    variable = pp_aux
    postprocessor = pp
  [../]
[]

modules/porous_flow/test/tests/dirackernels/bh_except02.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    mass_fraction_component = 1
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer_vector/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [prop_a]
    family = MONOMIAL
    order = CONSTANT
  []
  [prop_b]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[AuxKernels]
  [prop_a]
    type = MaterialRealAux
    variable = prop_a
    property = prop_a
  []
  [prop_b]
    type = MaterialRealAux
    variable = prop_b
    property = prop_b
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Materials]
  [mat]
    type = GenericConstantMaterial
    prop_names = 'prop_a prop_b'
    prop_values = '100    200'
  []
  [mat2]
    type = GenericConstantMaterial
    prop_names = 'prop_c prop_d prop_e'
    prop_values = '300    400    500'
  []
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Postprocessors]
  [left_bc]
    type = NodalVariableValue
    variable = u
    nodeid = 0
  []
  [right_bc]
    type = NodalVariableValue
    variable = u
    nodeid = 10
  []
  [prop_a]
    type = ElementalVariableValue
    variable = prop_a
    elementid = 0
  []
  [prop_b]
    type = ElementalVariableValue
    variable = prop_b
    elementid = 0
  []
[]

[Outputs]
  csv = true
[]

modules/phase_field/test/tests/grain_growth/off-diagonal.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1000
  zmin = 0
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 2
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalCircleGrainIC]
      radius = 333.333
      x = 500
      y = 500
      int_width = 80
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./gr_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON

  l_max_its = 30
  nl_max_its = 20

  start_time = 0.0
  num_steps = 7
  dt = 80.0

  [./Adaptivity]
   initial_adaptivity = 2
    refine_fraction = 0.3
    coarsen_fraction = 0.2
    max_h_level = 2
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/sliding_block/sliding/constraint/frictional_02_aug.i

#  This is a benchmark test that checks constraint based frictional
#  contact using the augmented lagrangian method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  A friction coefficient of 0.2 is used.  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[AuxVariables]
  [./contact_traction]
  [../]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]


[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 200
  dt = 0.1
  end_time = 15
  num_steps = 200
  l_tol = 1e-6
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  solution_variables = 'disp_x disp_y'
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 100
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    friction_coefficient = 0.2
    formulation = augmented_lagrange
    system = constraint
    normalize_penalty = true
    al_penetration_tolerance = 1e-6
    al_incremental_slip_tolerance = 1.0e-2
    al_frictional_force_tolerance =  1e-3
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

modules/chemical_reactions/test/tests/jacobian/2species.i

# Tests the Jacobian when no secondary species are present

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./pressure]
    type = RandomIC
    variable = pressure
    max = 10
    min = 1
  [../]
  [./a]
    type = RandomIC
    variable = a
    max = 1
    min = 0
  [../]
  [./b]
    type = RandomIC
    variable = b
    max = 1
    min = 0
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./a_conv]
    type = PrimaryConvection
    variable = a
    p = pressure
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./b_diff]
    type = PrimaryDiffusion
    variable = b
  [../]
  [./b_conv]
    type = PrimaryConvection
    variable = b
    p = pressure
  [../]
  [./pressure]
    type = DarcyFluxPressure
    variable = pressure
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-4 1e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
[]

[Outputs]
  perf_graph = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

test/tests/tag/tag_dirac_kernels.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
  elem_type = QUAD4
  uniform_refine = 4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./ddt_u]
    type = TimeDerivative
    variable = u
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]

  [./ddt_v]
    type = TimeDerivative
    variable = v
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]
[]

[DiracKernels]
  [./nonlinear_source]
    type = NonlinearSource
    variable = u
    coupled_var = v
    scale_factor = 1000
    point = '0.2 0.3 0'
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1 vec_tag2'
  [../]
[]

[BCs]
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]

  [./left_v]
    type = DirichletBC
    variable = v
    boundary = 3
    value = 1
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 0
    extra_matrix_tags = 'mat_tag1 mat_tag2'
    extra_vector_tags = 'vec_tag1'
  [../]
[]

[Preconditioning]
  [./precond]
    type = SMP
    full = true
  [../]
[]

[Problem]
  type = TagTestProblem
  test_tag_vectors =  'time nontime residual vec_tag1 vec_tag2'
  test_tag_matrices = 'mat_tag1 mat_tag2'

  extra_tag_matrices = 'mat_tag1 mat_tag2'
  extra_tag_vectors  = 'vec_tag1 vec_tag2'
[]

[AuxVariables]
  [./tag_variable1]
    order = FIRST
    family = LAGRANGE
  [../]

  [./tag_variable2]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./TagVectorAux1]
    type = TagVectorAux
    variable = tag_variable1
    v = u
    vector_tag = vec_tag2
    execute_on = timestep_end
  [../]

  [./TagVectorAux2]
    type = TagMatrixAux
    variable = tag_variable2
    v = u
    matrix_tag = mat_tag2
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON' # NEWTON provides a more stringent test of off-diagonal Jacobians
  num_steps = 5
  dt = 1
  dtmin = 1
  l_max_its = 100
  nl_max_its = 6
  nl_abs_tol = 1.e-13
[]

[Postprocessors]
  [./point_value]
    type = PointValue
    variable = u
    point = '0.2 0.3 0'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update34.i

# MC update version, with only MohrCoulomb, cohesion=40, friction angle = 35deg, psi = 5deg, smoothing_tol = 0.5
# Compressive strength = 1MPa
# Lame lambda = 1E3.  Lame mu = 1.3E3

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E2
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 4E1
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-100.1 -0.1 0.2  -0.1 -0.9 0  0.2 0 -1.1'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/frictionless_kinematic.i

[Mesh]
  file = blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e7
    poissons_ratio = 0.3
  [../]
  [./right]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    system = Constraint
    master = 2
    slave = 3
    model = frictionless
    penalty = 1e+6
  [../]
[]

modules/richards/test/tests/gravity_head_2/gh_lumped_18.i

# with immobile saturation
# unsaturated = true
# gravity = true
# supg = true
# transient = true
# lumped = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 0.5E-3'
  gravity = '-1 0 0'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 0.5E1 0.5E2 0.4E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.4
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.3
    n = 2
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./water_ic]
    type = ConstantIC
    value = 1
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[AuxVariables]
  [./seffgas]
  [../]
  [./seffwater]
  [../]
[]

[AuxKernels]
  [./seffgas_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffGas
    variable = seffgas
  [../]
  [./seffwater_kernel]
    type = RichardsSeffAux
    pressure_vars = 'pwater pgas'
    seff_UO = SeffWater
    variable = seffwater
  [../]
[]

[Postprocessors]
  [./mwater_init]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mgas_init]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_begin
    outputs = none
  [../]
  [./mwater_fin]
    type = RichardsMass
    variable = pwater
    execute_on = timestep_end
    outputs = none
  [../]
  [./mgas_fin]
    type = RichardsMass
    variable = pgas
    execute_on = timestep_end
    outputs = none
  [../]

  [./mass_error_water]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_w
  [../]
  [./mass_error_gas]
    type = FunctionValuePostprocessor
    function = fcn_mass_error_g
  [../]

  [./pw_left]
    type = PointValue
    point = '0 0 0'
    variable = pwater
    outputs = none
  [../]
  [./pw_right]
    type = PointValue
    point = '1 0 0'
    variable = pwater
    outputs = none
  [../]
  [./error_water]
    type = FunctionValuePostprocessor
    function = fcn_error_water
  [../]

  [./pg_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
    outputs = none
  [../]
  [./pg_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
    outputs = none
  [../]
  [./error_gas]
    type = FunctionValuePostprocessor
    function = fcn_error_gas
  [../]
[]

[Functions]
  [./fcn_mass_error_w]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mwater_init mwater_fin'
  [../]
  [./fcn_mass_error_g]
    type = ParsedFunction
    value = 'abs(0.5*(mi-mf)/(mi+mf))'
    vars = 'mi mf'
    vals = 'mgas_init mgas_fin'
  [../]
  [./fcn_error_water]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '1E2 -1 pw_left 1 pw_right'
  [../]
  [./fcn_error_gas]
    type = ParsedFunction
    value = 'abs((-b*log(-(gdens0*xval+(-b*exp(-p0/b)))/b)-p1)/p1)'
    vars = 'b gdens0 p0 xval p1'
    vals = '0.5E2 -0.5 pg_left 1 pg_right'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = gh_lumped_18
  execute_on = 'timestep_end final'
  interval = 100000
  exodus = true
[]

modules/solid_mechanics/test/tests/generalized_plane_strain/out_of_plane_pressure.i

# Tests the use of OutOfPlanePressure with generalized plane strain.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = square.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./strain_zz]
  [../]
[]

[AuxVariables]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./aux_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegralSM
    tensor = stress
    index = 2
  [../]
  [./min_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = min
  [../]
  [./max_strain_zz]
    type = NodalExtremeValue
    variable = strain_zz
    value_type = max
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
  [../]
[]

[Kernels]
  [./solid_z]
    type = OutOfPlaneStress
    variable = strain_zz
    save_in = saved_z
    disp_x = disp_x
    disp_y = disp_y
  [../]
  [./pressure_z]
    type = OutOfPlanePressure
    variable = strain_zz
    function = pressure_function
    save_in = saved_z
    factor = 1e5
  [../]
[]

[Constraints]
  [./szz]
    type = EqualValueBoundaryConstraint
    variable = strain_zz
    master = '8'
    slave = 10
    penalty = 1e12
    formulation = kinematic
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]

  [./strain_xx]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xx
    index = 0
  [../]
  [./strain_xy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_xy
    index = 3
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = strain_yy
    index = 1
  [../]
  [./strain_zz]
    type = MaterialTensorAux
    tensor = total_strain
    variable = aux_strain_zz
    index = 2
  [../]
[]

[Functions]
  [./pressure_function]
    type = PiecewiseLinear
    x='0  2'
    y='0  1'
  [../]
[]

[BCs]
  [./leftx]
    type = DirichletBC
    boundary = 4
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    formulation = PlaneStrain
    strain_zz = strain_zz
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none


# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-11

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/waterncg_twophase_nonisothermal.i

# Tests correct calculation of properties derivatives in PorousFlowWaterNCG
# for nonisothermal two phase conditions

[Mesh]
  [./mesh]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    ny = 2
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pgas]
  [../]
  [./z]
  [../]
  [./temperature]
  [../]
[]

[ICs]
  [./pgas]
    type = RandomIC
    min = 1e5
    max = 5e5
    variable = pgas
  [../]
  [./z]
    type = RandomIC
    min = 0.01
    max = 0.06
    variable = z
  [../]
  [./temperature]
    type = RandomIC
    min = 20
    max = 80
    variable = temperature
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    variable = pgas
    fluid_component = 0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    variable = z
    fluid_component = 1
  [../]
  [./energy]
    type = PorousFlowEnergyTimeDerivative
    variable = temperature
  [../]
  [./heat]
    type = PorousFlowHeatAdvection
    variable = temperature
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z temperature'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e1
    pc_max = 1e4
  [../]
  [./fs]
    type = PorousFlowWaterNCG
    water_fp = water
    gas_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    temperature = temperature
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1000
    density = 2500
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[AuxVariables]
  [./sgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./sgas]
    type = PorousFlowPropertyAux
    property = saturation
    phase = 1
    variable = sgas
  [../]
[]

[Postprocessors]
  [./sgas_min]
    type = ElementExtremeValue
    variable = sgas
    value_type = min
  [../]
  [./sgas_max]
    type = ElementExtremeValue
    variable = sgas
    value_type = max
  [../]
[]

modules/tensor_mechanics/test/tests/combined_creep_plasticity/combined_creep_plasticity.i

#
# This test is Example 2 from "A Consistent Formulation for the Integration
#   of Combined Plasticity and Creep" by P. Duxbury, et al., Int J Numerical
#   Methods in Engineering, Vol. 37, pp. 1277-1295, 1994.
#
# The problem is a one-dimensional bar which is loaded from yield to a value of twice
#   the initial yield stress and then unloaded to return to the original stress. The
#   bar must harden to the required yield stress during the load ramp, with no
#   further yielding during unloading. The initial yield stress (sigma_0) is prescribed
#   as 20 with a plastic strain hardening of 100. The mesh is a 1x1x1 cube with symmetry
#   boundary conditions on three planes to provide a uniaxial stress field.
#
#  In the PowerLawCreep model, the creep strain rate is defined by:
#
#   edot = A(sigma)**n * exp(-Q/(RT)) * t**m
#
#   The creep law specified in the paper, however, defines the creep strain rate as:
#
#   edot = Ao * mo * (sigma)**n * t**(mo-1)
#      with the creep parameters given by
#         Ao = 1e-7
#         mo = 0.5
#         n  = 5
#
#   thus, input parameters for the test were specified as:
#         A = Ao * mo = 1e-7 * 0.5 = 0.5e-7
#         m = mo-1 = -0.5
#         n = 5
#         Q = 0
#
#   The variation of load P with time is:
#       P = 20 + 20t      0 < t < 1
#       P = 40 - 40(t-1)  1 < t 1.5
#
#  The analytic solution for total strain during the loading period 0 < t < 1 is:
#
#    e_tot = (sigma_0 + 20*t)/E + 0.2*t + A * t**0.5  * sigma_0**n * [ 1 + (5/3)*t +
#               + 2*t**2 + (10/7)*t**3 + (5/9)**t**4 + (1/11)*t**5 ]
#
#    and during the unloading period 1 < t < 1.5:
#
#    e_tot = (sigma_1 - 40*(t-1))/E + 0.2 + (4672/693) * A * sigma_0**n +
#               A * sigma_0**n * [ t**0.5 * ( 32 - (80/3)*t + 16*t**2 - (40/7)*t**3
#                                  + (10/9)*t**4 - (1/11)*t**5 ) - (11531/693) ]
#
#         where sigma_1 is the stress at time t = 1.
#
#  Assuming a Young's modulus (E) of 1000 and using the parameters defined above:
#
#    e_tot(1) = 2.39734
#    e_tot(1.5) = 3.16813
#
#
#   The numerically computed solution is:
#
#    e_tot(1) = 2.39718         (~0.006% error)
#    e_tot(1.5) = 3.15555       (~0.40% error)
#
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy elastic_strain_yy creep_strain_yy plastic_strain_yy'
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '  0   1   1.5'
    y = '-20 -40   -20'
  [../]

  [./dts]
    type = PiecewiseLinear
    x = '0        0.5    1.0    1.5'
    y = '0.015  0.015  0.005  0.005'
  [../]
[]

[BCs]
  [./u_top_pull]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    factor = 1
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    youngs_modulus = 1e3
    poissons_ratio = 0.3
  [../]
  [./creep_plas]
    type = ComputeMultipleInelasticStress
    block = 0
    tangent_operator = elastic
    inelastic_models = 'creep plas'
    max_iterations = 50
    absolute_tolerance = 1e-05
    combined_inelastic_strain_weights = '0.0 1.0'
  [../]
  [./creep]
    type = PowerLawCreepStressUpdate
    block = 0
    coefficient = 0.5e-7
    n_exponent = 5
    m_exponent = -0.5
    activation_energy = 0
  [../]
  [./plas]
    type = IsotropicPlasticityStressUpdate
    block = 0
    hardening_constant = 100
    yield_stress = 20
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 6
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-10
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/flux_limited_TVD_pflow/jacobian_03.i

# Checking the Jacobian of Flux-Limited TVD Advection, 2 phases, 2 components, using flux_limiter_type = None
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 2
  ymin = -1
  ymax = 2
  bias_y = 1.5
[]

[GlobalParams]
  gravity = '1 2 -0.5'
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]


[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./flux_ph0_sp0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = ppwater
    advective_flux_calculator = advective_flux_calculator_ph0_sp0
  [../]
  [./flux_ph0_sp1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = ppgas
    advective_flux_calculator = advective_flux_calculator_ph0_sp1
  [../]
  [./flux_ph1_sp0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = massfrac_ph0_sp0
    advective_flux_calculator = advective_flux_calculator_ph1_sp0
  [../]
  [./flux_ph1_sp1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = massfrac_ph1_sp0
    advective_flux_calculator = advective_flux_calculator_ph1_sp1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1.4
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas massfrac_ph0_sp0 massfrac_ph1_sp0'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1
    m = 0.5
  [../]
  [./advective_flux_calculator_ph0_sp0]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = None
    phase = 0
    fluid_component = 0
  [../]
  [./advective_flux_calculator_ph0_sp1]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = None
    phase = 0
    fluid_component = 1
  [../]
  [./advective_flux_calculator_ph1_sp0]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = None
    phase = 1
    fluid_component = 0
  [../]
  [./advective_flux_calculator_ph1_sp1]
    type = PorousFlowAdvectiveFluxCalculatorUnsaturatedMultiComponent
    flux_limiter_type = None
    phase = 1
    fluid_component = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.21 0 0  0 1.5 0  0 0 0.8'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
  num_steps = 1
  dt = 1
[]

modules/tensor_mechanics/test/tests/multi/three_surface02.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 0E-6m in y direction and 2.0E-6 in z direction.
# trial stress_yy = 0 and stress_zz = 2.0
#
# Then SimpleTester0 and SimpleTester2 should activate and the algorithm will return to
# the corner stress_yy=0.5, stress_zz=1, but this will require a negative plasticity
# multiplier for SimpleTester2, so it will be deactivated, and the algorithm will return to
# stress_yy = 0, stress_zz = 1
# internal0 should be 1.0, and others zero

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '2.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface02
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/examples/bridge/bridge_large_strain.i

#
# Bridge linear elasticity example
#
# This example models a bridge using linear elasticity.
# It can be either steel or concrete.
# Gravity is applied
# A pressure of 0.5 MPa is also applied
#

[Mesh]
  displacements = 'disp_x disp_y disp_z' #Define displacements for deformed mesh
  type = FileMesh #Read in mesh from file
  file = bridge.e

  boundary_id = '1 2 3 4 5 6' #Assign names to boundaries to make things clearer
  boundary_name = 'top left right bottom1 bottom2 bottom3'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./gravity_y]
    #Gravity is applied to bridge
    type = Gravity
    variable = disp_y
    value = -9.81
  [../]
  [./TensorMechanics]
    #Stress divergence kernels
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[AuxVariables]
  [./von_mises]
    #Dependent variable used to visualize the Von Mises stress
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./von_mises_kernel]
    #Calculates the von mises stress and assigns it to von_mises
    type = RankTwoScalarAux
    variable = von_mises
    rank_two_tensor = stress
    execute_on = timestep_end
    scalar_type = VonMisesStress
  [../]
[]

[BCs]
  [./Pressure]
    [./load]
      #Applies the pressure
      boundary = top
      factor = 5e5 # Pa
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
    [../]
  [../]
  [./anchor_x]
    #Anchors the bottom and sides against deformation in the x-direction
    type = DirichletBC
    variable = disp_x
    boundary = 'left right bottom1 bottom2 bottom3'
    value = 0.0
  [../]
  [./anchor_y]
    #Anchors the bottom and sides against deformation in the y-direction
    type = DirichletBC
    variable = disp_y
    boundary = 'left right bottom1 bottom2 bottom3'
    value = 0.0
  [../]
  [./anchor_z]
    #Anchors the bottom and sides against deformation in the z-direction
    type = DirichletBC
    variable = disp_z
    boundary = 'left right bottom1 bottom2 bottom3'
    value = 0.0
  [../]
[]

[Materials]
  active = 'density_steel stress strain elasticity_tensor_steel'
  [./elasticity_tensor_steel]
    #Creates the elasticity tensor using steel parameters
    youngs_modulus = 210e9 #Pa
    poissons_ratio = 0.3
    type = ComputeIsotropicElasticityTensor
    block = 1
  [../]
  [./elasticity_tensor_concrete]
    #Creates the elasticity tensor using concrete parameters
    youngs_modulus = 16.5e9 #Pa
    poissons_ratio = 0.2
    type = ComputeIsotropicElasticityTensor
    block = 1
  [../]
  [./strain]
    #Computes the strain, assuming small strains
    type = ComputeFiniteStrain
    block = 1
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    #Computes the stress, using linear elasticity
    type = ComputeFiniteStrainElasticStress
    block = 1
  [../]
  [./density_steel]
    #Defines the density of steel
    type = GenericConstantMaterial
    block = 1
    prop_names = density
    prop_values = 7850 # kg/m^3
  [../]
  [./density_concrete]
    #Defines the density of concrete
    type = GenericConstantMaterial
    block = 1
    prop_names = density
    prop_values = 2400 # kg/m^3
  [../]
[]

[Preconditioning]
  [./SMP]
    #Creates the entire Jacobian, for the Newton solve
    type = SMP
    full = true
  [../]
[]

[Executioner]
  #We solve a steady state problem using Newton's iteration
  type = Transient
  solve_type = NEWTON
  nl_rel_tol = 1e-9
  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 10
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'
  dt = 0.1
  num_steps = 1
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_1/plane1_template2_sm.i

[Mesh]
  file = plane1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 200
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_x = diag_saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

test/tests/multiapps/move/multilevel_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '1 1 0'
    input_files = sub.i
    output_in_position = true
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cto03.i

# checking jacobian for linear plasticity (weak_plane_tensile)
# with hardening
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningCubic
    value_0 = 0
    value_residual = 1
    internal_limit = 1
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '1 2'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1 2 3  2 -4 -5  3 -5 2'
    eigenstrain_name = ini_stress
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    tangent_operator = linear
    plastic_models = wpt
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-5
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/multiapps/time_offset/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.2

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    type = TransientMultiApp
    input_files = 'sub.i'
    global_time_offset = 0.8
  [../]
[]

modules/level_set/examples/vortex/vortex_reinit_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmax = 1
  ymax = 1
  nx = 16
  ny = 16
  uniform_refine = 2
  elem_type = QUAD9
  second_order = true
[]

[Variables/phi]
    family = LAGRANGE
[]

[AuxVariables]
  [phi_0]
    family = LAGRANGE
  []
  [marker]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = phi
  []
  [reinit]
    type = LevelSetOlssonReinitialization
    variable = phi
    phi_0 = phi_0
    epsilon = 0.03
  []
[]

[Problem]
  type = LevelSetReinitializationProblem
[]

[UserObjects]
  [arnold]
    type = LevelSetOlssonTerminator
    tol = 0.5
    min_steps = 3
  []
[]

[Preconditioning/smp]
    type = SMP
    full = true
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  start_time = 0
  num_steps = 100
  nl_abs_tol = 1e-14
  scheme = crank-nicolson
  line_search = none
  dt = 0.003
[]

[Outputs]
[]

test/tests/multiapps/sub_cycling/master_short.i

# The master app will do 4 timesteps, while sub app only 2. This tests that the sub app will not
# do anything during the inactive period.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.4
  dt = 0.1

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub_short.i
    sub_cycling = true
  [../]
[]

test/tests/functions/image_function/image_mesh_2d.i

[Mesh]
  type = ImageMesh
  dim = 2
  file = stack/test_00.png
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    # ImageFunction gets its file range parameters from ImageMesh,
    # when it is present.  This prevents duplicating information in
    # input files.
    type = ImageFunction
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[../]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/postprocessor_dependency/element_side_pp.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 3
  ny = 3
  elem_type = QUAD9
[]

[Variables]
  active = 'u v'

  [./u]
    order = SECOND
    family = LAGRANGE
    [./InitialCondition]
      type = ConstantIC
      value = 2.8
    [../]
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
    [./InitialCondition]
      type = ConstantIC
      value = 5.4
    [../]
  [../]
[]

[Functions]
  active = 'force_fn exact_fn left_bc'

  [./force_fn]
    type = ParsedFunction
    value = '1-x*x+2*t'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = '(1-x*x)*t'
  [../]

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = '
    time_u diff_u ffn_u
    time_v diff_v'

  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'all_u left_v right_v'

  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '1'
    value = 0
  [../]
[]

[Postprocessors]

  [./sidepp]
    type = SideIntegralVariablePostprocessor
    variable = v
    execute_on = timestep_end
    boundary = '0 1 2 3'
  [../]

  [./passsidepp]
    type = ElementSidePP
    side_pp = sidepp
    execute_on = timestep_end
  [../]

[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 0.3
[]

[Outputs]
  file_base = out
  csv = true
[]

modules/tensor_mechanics/test/tests/drucker_prager/small_deform2_outer_tip.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1.5E-6*x+2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./mc]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    smoother = 4
    mc_interpolation_scheme = outer_tip
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2_outer_tip
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/crystal_plasticity/karthik-eg-1.i

[Mesh]
  type = GeneratedMesh
  elem_type = HEX8
  dim = 3
  nz = 10
  xmax = 10
  ymax = 10
  zmax = 100
[]

[Variables]
  [./x_disp]
    block = 0
  [../]
  [./y_disp]
    block = 0
  [../]
  [./z_disp]
    block = 0
  [../]
[]

[TensorMechanics]
  [./solid]
#    disp_x = x_disp
#    disp_y = y_disp
#    disp_z = z_disp
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Materials]
  active = 'fcrysp'
  [./felastic]
    type = FiniteStrainElasticMaterial
    block = 0
    fill_method = symmetric9
    disp_x = x_disp
    disp_y = y_disp
    disp_z = z_disp
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
  [../]
  [./fcrysp]
    type = FiniteStrainCrystalPlasticity
    block = 0
    disp_y = y_disp
    disp_x = x_disp
    disp_z = z_disp
    flowprops = '1 12 0.001 0.1'
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    nss = 12
    hprops = '1.0 541.5 60.8 109.8'
    gprops = '1 12 60.8'
    fill_method = symmetric9
    slip_sys_file_name = input_slip_sys.txt
  [../]
[]

[Functions]
  [./topdisp]
    type = ParsedFunction
    value = 0.7*t
  [../]
  [./tpress]
    type = ParsedFunction
    value = -200*t
  [../]
[]

[BCs]
  [./zbc]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0
  [../]
  [./ybc]
    type = DirichletBC
    variable = y_disp
    boundary = bottom
    value = 0
  [../]
  [./xbc]
    type = DirichletBC
    variable = x_disp
    boundary = left
    value = 0
  [../]
  [./zmove]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = front
    function = topdisp
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 3
    index_j = 3
    execute_on = timestep_end
    block = 0
  [../]
  [./e_zz]
    type = RankTwoAux
    rank_two_tensor = lage
    variable = e_zz
    index_i = 3
    index_j = 3
    execute_on = timestep_end
    block = 0
  [../]
[]

[Postprocessors]
  [./szz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./ezz]
    type = ElementAverageValue
    variable = e_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  num_steps = 1000
  end_time = 1
  dt = 0.02
  dtmax = 0.02
  dtmin = 0.02
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-08
  nl_rel_step_tol = 1e-08
  nl_abs_step_tol = 1e-08
  abort_on_solve_fail = true
  n_startup_steps = 0.0
[]

[Outputs]
  file_base = out
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/global_strain/global_strain_direction.i

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    ny = 2
    xmin = -0.5
    xmax = 0.5
    ymin = -0.5
    ymax = 0.5
  []
  [cnode]
    type = ExtraNodesetGenerator
    coord = '0 0'
    new_boundary = 100
    input = generated_mesh
  []
[]

[Variables]
  [./u_x]
  [../]
  [./u_y]
  [../]
  [./global_strain]
    order = THIRD
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = GlobalDisplacementAux
    variable = disp_x
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 0
  [../]
  [./disp_y]
    type = GlobalDisplacementAux
    variable = disp_y
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 1
  [../]
[]

[GlobalParams]
  displacements = 'u_x u_y'
  block = 0
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[ScalarKernels]
  [./global_strain]
    type = GlobalStrain
    variable = global_strain
    global_strain_uo = global_strain_uo
  [../]
[]

[BCs]
  [./Periodic]
    [./left-right]
      auto_direction = 'x'
      variable = 'u_x u_y'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = u_x
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    boundary = bottom
    variable = u_y
    value = 0
  [../]
  [./appl_y]
    type = DirichletBC
    boundary = top
    variable = u_y
    value = -0.1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '1 1'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    global_strain = global_strain
  [../]
  [./global_strain]
    type = ComputeGlobalStrain
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[UserObjects]
  [./global_strain_uo]
    type = GlobalStrainUserObject
    execute_on = 'Initial Linear Nonlinear'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'
  line_search = basic
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  l_max_its = 30
  nl_max_its = 12

  l_tol = 1.0e-4

  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 2
[]

[Outputs]
exodus = true
[]

modules/combined/test/tests/sliding_block/sliding/dirac/frictionless_penalty.i

#  This is a benchmark test that checks Dirac based frictionless
#  contact using the penalty method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
    order = FIRST
    family = LAGRANGE
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./stiffStuff]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]  # Materials


[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.05
  end_time = 10
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

test/tests/multiapps/sub_cycling/sub_short.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.01
  end_time = 0.2

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/heat_conduction/test/tests/heat_conduction/2d_quadrature_gap_heat_transfer/moving.i

[Mesh]
  file = nonmatching.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./temp]
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Functions]
  [./disp_y]
    type = ParsedFunction
    value = 0.1*t
  [../]
  [./left_temp]
    type = ParsedFunction
    value = 1000+t
  [../]
[]

[Kernels]
  [./hc]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./disp_y]
    type = FunctionAux
    variable = disp_y
    function = disp_y
    block = left
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = temp
    boundary = leftleft
    function = left_temp
  [../]
  [./right]
    type = DirichletBC
    variable = temp
    boundary = rightright
    value = 400
  [../]
[]

[ThermalContact]
  [./left_to_right]
    slave = leftright
    quadrature = true
    master = rightleft
    variable = temp
    type = GapHeatTransfer
  [../]
[]

[Materials]
  [./hcm]
    type = HeatConductionMaterial
    block = 'left right'
    specific_heat = 1
    thermal_conductivity = 1
    use_displaced_mesh = true
  [../]
[]

[Postprocessors]
  [./left]
    type = SideFluxIntegral
    variable = temp
    boundary = leftright
    diffusivity = thermal_conductivity
  [../]
  [./right]
    type = SideFluxIntegral
    variable = temp
    boundary = rightleft
    diffusivity = thermal_conductivity
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 9
  dt = 1

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/actions/both_direct_2vars.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 9
  ny = 6
  xmin = 10
  xmax = 40
  ymin = 15
  ymax = 35
  elem_type = QUAD
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./c]
        free_energy = F
        mobility = 1.0
        kappa = 20.0
        args = 'eta'
        solve_type = direct
      [../]
    [../]
    [./Nonconserved]
      [./eta]
        free_energy = F
        mobility = 1.0
        kappa = 20
        args = 'c'
        family = HERMITE
        order = THIRD
      [../]
    [../]
  [../]
[]

[ICs]
  [./c_IC]
    type = BoundingBoxIC
    variable = c
    x1 = 10
    x2 = 25
    y1 = 15
    y2 = 35
    inside = 0.1
    outside = 0.9
  [../]
  [./eta_IC]
    type = ConstantIC
    variable = eta
    value = 0.5
  [../]
[]

[Materials]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta c'
    function = '(1 - eta)*10.0*(c - 0.1)^2 + eta*(8.0*(c - 0.9)^2) + 10.0*eta^2*(1-eta)^2'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm lu'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 5
  dt = 0.05
[]

[Outputs]
  perf_graph = true
  [./out]
    type = Exodus
    refinements = 2
  [../]
[]

test/tests/nodalkernels/constraint_enforcement/lower-bound.i

l=10
nx=100
num_steps=10

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmax = ${l}
  nx = ${nx}
[]

[Variables]
  [u]
  []
  [lm]
  []
[]

[ICs]
  [u]
    type = FunctionIC
    variable = u
    function = '${l} - x'
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = Diffusion
    variable = u
  []
  [ffn]
    type = BodyForce
    variable = u
    function = '-1'
  []
[]

[NodalKernels]
  [positive_constraint]
    type = LowerBoundNodalKernel
    variable = lm
    v = u
    exclude_boundaries = 'left right'
  []
  [forces]
    type = CoupledForceNodalKernel
    variable = u
    v = lm
  []
[]


[BCs]
  [left]
    type = DirichletBC
    boundary = left
    value = ${l}
    variable = u
  []
  [right]
    type = DirichletBC
    boundary = right
    value = 0
    variable = u
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  num_steps = ${num_steps}
  solve_type = NEWTON
  dtmin = 1
  petsc_options_iname = '-snes_max_linear_solve_fail -ksp_max_it -pc_type -sub_pc_factor_levels -snes_linesearch_type'
  petsc_options_value = '0                           30          asm      16                    basic'
[]

[Outputs]
  exodus = true
  [csv]
    type = CSV
    execute_on = 'nonlinear timestep_end'
  []
  [dof]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Debug]
  show_var_residual_norms = true
[]

[Postprocessors]
  [active_lm]
    type = GreaterThanLessThanPostprocessor
    variable = lm
    execute_on = 'nonlinear timestep_end'
    value = 1e-8
  []
  [violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = -1e-8
    comparator = 'less'
  []
[]

modules/porous_flow/test/tests/sinks/PorousFlowPiecewiseLinearSink_BC_eg1.i

## This is an example input file showing how to set a Type I (Dirichlet) BC with PorousFlowPiecewiseLinearSink
##
## Problem setup:
##   - The boundaries are set to P(x = 0) = 2e6 Pa, P(x = 1) = 1e6 and run to steady state.
##   - The 2d domain is 1 m x 1 m
##   - The permeability is set to 1E-15 m2, fluid viscosity = 1E-3 Pa-s
##   - The steady state flux is calculated q = -k/mu*grad(P) = 1e-6 m/s
##
## Problem verification (in csv output):
##   - The flux in and out of the domain are 1e-6 m/s (matching steady state solution)
##   - The pressure at the left and right boundaries are set to 2e6 and 1e6 Pa, respectively

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  xmin = 0
  xmax = 1
  ny = 2
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
    initial_condition = 1.5e6 # initial pressure in domain
  [../]
[]

[PorousFlowBasicTHM]
  porepressure = porepressure
  coupling_type = Hydro
  gravity = '0 0 0'
  fp = the_simple_fluid
[]

[AuxVariables]
  [./fluxes_out]
  [../]
  [./fluxes_in]
  [../]
[]

[BCs]
  [./in_left]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = 'left'
    pt_vals = '-1e9 1e9' # x coordinates defining g
    multipliers = '-1e9 1e9' # y coordinates defining g
    PT_shift = 2.E6   # BC pressure
    flux_function = 1E-5 # Variable C
    fluid_phase = 0
    save_in = fluxes_out
  [../]
  [./out_right]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = 'right'
    pt_vals = '-1e9 1e9' # x coordinates defining g
    multipliers = '-1e9 1e9' # y coordinates defining g
    PT_shift = 1.E6   # BC pressure
    flux_function = 1E-6 # Variable C
    fluid_phase = 0
    save_in = fluxes_in
  [../]
[]

[Postprocessors]
  [./left_flux]
    type = NodalSum
    boundary = 'left'
    variable = fluxes_out
    execute_on = 'timestep_end'
  [../]
  [./right_flux]
    type = NodalSum
    boundary = 'right'
    variable = fluxes_in
    execute_on = 'timestep_end'
  [../]
  [./left_pressure]
    type = SideAverageValue
    boundary = 'left'
    variable = porepressure
    execute_on = 'timestep_end'
  [../]
  [./right_pressure]
    type = SideAverageValue
    boundary = 'right'
    variable = porepressure
    execute_on = 'timestep_end'
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0
      viscosity = 1.0E-3
      density0 = 1000.0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.8
    solid_bulk_compliance = 2E-7
    fluid_bulk_modulus = 1E7
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0   0 1E-15 0   0 0 1E-15'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E5
  nl_abs_tol = 1E-10
[]

[Outputs]
  csv = true
[]

modules/solid_mechanics/test/tests/LSH_smallstrain/LSH_smallstrain_test.i

#This is a test of the LSHPlasticMaterial (linear strain hardening) model using the small strain formulation.
#The exact same problem was run in Abaqus with exactly the same result.

[Mesh]
  file = 1x1x1cube.e

#  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t*(1.0/5.0)
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]

  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]

  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]

 []


[BCs]

  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

[]

[Materials]
  [./delaware]
    type = LinearStrainHardening
    formulation = linear
    block = 1
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
    yield_stress = 2.4e2
    hardening_constant = 1206
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
  start_time = 0.0
  end_time = 0.0105
#  num_steps = 100
  dt = 1.5e-3
[]



[Outputs]
  file_base = out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update17.i

# MC update version, with only Compressive with compressive strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.
# Returns to close to the edge of compressive yield

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1 -0.1 -0.2  -0.1 -15 0.3  -0.2 0.3 -14'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/multiapps/positions_from_file/dt_from_multi.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1 # This will be constrained by the multiapp

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    positions_file = positions.txt
    type = TransientMultiApp
    input_files = 'dt_from_multi_sub.i'
    app_type = MooseTestApp
  [../]
[]

modules/chemical_reactions/test/tests/exceptions/missing_gamma2.i

# Missing activity coefficient in CoupledBEEquilibriumSub Kernel

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
  [./c]
  [../]
[]

[AuxVariables]
  [./gamma_a]
  [../]
  [./gamma_b]
  [../]
  [./gamma_c]
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./c_ie]
    type = PrimaryTimeDerivative
    variable = c
  [../]
  [./aeq]
    type = CoupledBEEquilibriumSub
    variable = a
    log_k = 1
    weight = 2
    sto_u = 2
    v = 'b c'
    sto_v = '1 1'
    gamma_v = gamma_b
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = porosity
    prop_values = 0.2
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
[]

modules/xfem/test/tests/second_order_elements/diffusion_2d_quad9.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 4
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD9
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.35 1.0 0.35 0.2'
    time_start_cut = 0.0
    time_end_cut = 2.0
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 3
    function = u_left
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_2/brick2_aug.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick2_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 100
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_x26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_x
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./disp_y26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x7 disp_y7 disp_x26 disp_y26 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    tangential_tolerance = 1e-3
    formulation = augmented_lagrange
    system = constraint
    normalize_penalty = true
    penalty = 1e8
    model = frictionless
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/tensor_mechanics/test/tests/ad_2D_geometries/2D-RZ_finiteStrain_test.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces, using 2D axisymmetric geometry.
# This test uses the strain calculator ComputeAxisymmetricRZFiniteStrain,
# which is generated through the use of the TensorMechanics MasterAction.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000 at t = 1.0, respectively. The resulting compressive
# tangential stress is largest at the inner wall and, from the above equation, has a
# value of -271429.
#
# RESULTS are below. Since stresses are average element values, values for the
# edge element and one-element-in are used to extrapolate the stress to the
# inner surface. The vesrion of the tests that are checked use the coarsest meshes.
#
#  Mesh    Radial elem   S(edge elem)  S(one elem in)  S(extrap to surf)
# 1D-SPH
# 2D-RZ        12 (x10)    -265004      -254665        -270174
#  3D          12 (6x6)    -261880      -252811        -266415
#
# 1D-SPH
# 2D-RZ        48 (x10)    -269853      -266710        -271425
#  3D          48 (10x10)  -268522      -265653        -269957
#
# The numerical solution converges to the analytical solution as the mesh is
# refined.

[Mesh]
  file = 2D-RZ_mesh.e
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    block = 1
    use_automatic_differentiation = true
  [../]
[]

[AuxVariables]
  [./stress_theta]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_theta]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_theta]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_theta
    execute_on = timestep_end
  [../]
  [./strain_theta]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 2
    index_j = 2
    variable = strain_theta
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.345
    block = 1
  [../]

  [./_elastic_strain]
    type = ADComputeFiniteStrainElasticStress
    block = 1
  [../]
[]

[BCs]
# pin particle along symmetry planes
  [./no_disp_r]
    type = ADDirichletBC
    variable = disp_r
    boundary = xzero
    value = 0.0
  [../]

  [./no_disp_z]
    type = ADDirichletBC
    variable = disp_z
    boundary = yzero
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_r]
    type = ADPressure
    variable = disp_r
    boundary = outer
    component = 0
    function = '200000*t'
  [../]

 [./exterior_pressure_z]
    type = ADPressure
    variable = disp_z
    boundary = outer
    component = 1
    function = '200000*t'
  [../]

  [./interior_pressure_r]
    type = ADPressure
    variable = disp_r
    boundary = inner
    component = 0
    function = '100000*t'
  [../]

  [./interior_pressure_z]
    type = ADPressure
    variable = disp_z
    boundary = inner
    component = 1
    function = '100000*t'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '  201               hypre    boomeramg      10'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

  start_time = 0.0
  end_time = 0.2
  dt = 0.1
[]

[Postprocessors]
  [./strainTheta]
    type = ElementAverageValue
    variable = strain_theta
  [../]
  [./stressTheta]
    type = ElementAverageValue
    variable = stress_theta
  [../]
  [./stressTheta_pt]
    type = PointValue
    point = '5.0 0.0 0.0'
    #bottom inside edge for comparison to theory; use csv = true
    variable = stress_theta
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/gap_heat_transfer_convex/gap_heat_transfer_convex.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  temperature = temp
[]

[Mesh]
  file = gap_heat_transfer_convex.e
[]

[Functions]
  [./disp]
    type = PiecewiseLinear
    x = '0 2.0'
    y = '0 1.0'
  [../]
  [./temp]
    type = PiecewiseLinear
    x = '0     1'
    y = '200 200'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]

  [./temp]
    initial_condition = 100
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 2
    slave = 3
  [../]
[]

[Modules/TensorMechanics/Master/All]
  volumetric_locking_correction = true
  strain = FINITE
  eigenstrain_names = eigenstrain
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./move_right]
    type = FunctionDirichletBC
    boundary = '3'
    variable = disp_x
    function = disp
  [../]

  [./fixed_x]
    type = DirichletBC
    boundary = '1'
    variable = disp_x
    value = 0
  [../]
  [./fixed_y]
    type = DirichletBC
    boundary = '1 2 3 4'
    variable = disp_y
    value = 0
  [../]
  [./fixed_z]
    type = DirichletBC
    boundary = '1 2 3 4'
    variable = disp_z
    value = 0
  [../]

  [./temp_bottom]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]
  [./temp_top]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 100
    thermal_expansion_coeff = 0
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./heat1]
    type = HeatConductionMaterial
    block = 1

    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]
  [./heat2]
    type = HeatConductionMaterial
    block = 2

    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    block = '1 2'
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  dt = 0.1
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/disp02.i

# Test the Jacobian of the dispersive contribution to the diffusive component of
# the PorousFlowDisperiveFlux kernel along with a non-zero diffusion.
# By setting disp_long and disp_trans to the same non-zero value, the purely
# dispersive component of the flux is zero, and the only flux is due to diffusion
# and its contribution from disp_trans.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
[]

[ICs]
  [./pp]
    type = RandomIC
    variable = pp
    max = 2e1
    min = 1e1
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = pp
    gravity = '1 0 0'
    disp_long = 0.1
    disp_trans = 0.1
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    gravity = '1 0 0'
    disp_long = 0.1
    disp_trans = 0.1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1e7
      density0 = 10
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temp]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1e-2 1e-1'
    tortuosity = '0.1'
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
[]

[Preconditioning]
  active = smp
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/tensor_mechanics/test/tests/tensile/small_deform6.i

# checking for small deformation
# A single element is incrementally stretched in the in the z direction
# This causes the return direction to be along the hypersurface sigma_II = sigma_III,
# and the resulting stresses are checked to lie on the expected yield surface
#
# tensile_strength is set to 1Pa, tip_smoother = 0.5
# Lode angle = -30degrees


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.25E-6*z*t*t'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./mc]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    yield_function_tolerance = 1E-6
    tensile_tip_smoother = 0.5
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform6
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/porous_flow/test/tests/poro_elasticity/pp_generation_action.i

# Same as pp_generation.i, but using an Action
#
# A sample is constrained on all sides and its boundaries are
# also impermeable.  Fluid is pumped into the sample via a
# volumetric source (ie kg/second per cubic meter), and the
# rise in porepressure is observed.
#
# Source = s  (units = kg/m^3/second)
#
# Expect:
# fluid_mass = mass0 + s*t
# stress = 0 (remember this is effective stress)
# Porepressure = fluid_bulk*log(fluid_mass_density/density_P0), where fluid_mass_density = fluid_mass*porosity
# porosity = biot+(phi0-biot)*exp(pp(biot-1)/solid_bulk)
#
# Parameters:
# Biot coefficient = 0.3
# Phi0 = 0.1
# Solid Bulk modulus = 2
# fluid_bulk = 13
# density_P0 = 1

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]
[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.0
      bulk_modulus = 13.0
      viscosity = 1.0
      density0 = 1.0
    [../]
  [../]
[]

[PorousFlowUnsaturated]
  coupling_type = HydroMechanical
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  biot_coefficient = 0.3
  gravity = '0 0 0'
  fp = the_simple_fluid
  van_genuchten_alpha = 1.0
  van_genuchten_m = 0.8
  relative_permeability_type = Corey
  relative_permeability_exponent = 0.0
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
[]

[Kernels]
  [./source]
    type = BodyForce
    function = 0.1
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./porosity]
    type = PorousFlowPropertyAux
    variable = porosity
    property = porosity
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.1
    biot_coefficient = 0.3
    solid_bulk = 2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0   0 1 0   0 0 1' # unimportant
  [../]
[]

[Functions]
  [./porosity_analytic]
    type = ParsedFunction
    value = 'biot+(phi0-biot)*exp(pp*(biot-1)/bulk)'
    vars = 'biot phi0 pp bulk'
    vals = '0.3 0.1 p0 2'
  [../]
[]

[Postprocessors]
  [./fluid_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
    use_displaced_mesh = true
  [../]
  [./porosity]
    type = PointValue
    outputs = 'console csv'
    point = '0 0 0'
    variable = porosity
  [../]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./porosity_analytic]
    type = FunctionValuePostprocessor
    function = porosity_analytic
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]

[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = pp_generation_action
  csv = true
[]

test/tests/transfers/multiapp_copy_transfer/multivariable_copy/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]
  [./right_u]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
  [./left_v]
    type = DirichletBC
    variable = u
    boundary = left
    value = 2
  [../]
  [./right_v]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/controls/time_periods/bcs/bcs.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./right2]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = (y*(t-1))+1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Controls]
  [./period0]
    type = TimePeriod
    disable_objects = 'BCs::right2'
    start_time = '0'
    end_time = '0.95'
    execute_on = 'initial timestep_begin'
  [../]

  [./period2]
    type = TimePeriod
    disable_objects = 'BCs::right'
    start_time = '1'
    execute_on = 'initial timestep_begin'
  [../]
[]

test/tests/time_integrators/convergence/implicit_convergence.i

[Mesh]
  type = GeneratedMesh
  dim  = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx   = 4
  ny   = 4
  elem_type = QUAD9
[]

[Variables]
  active = 'u'

  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
    preset = false
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  start_time = 0.0
  end_time = 1.0
  dt = 0.0625

 [./TimeIntegrator]
   type = ImplicitMidpoint
 [../]
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  csv = true
[]

test/tests/materials/output/output_boundary.i

[Mesh]
  type = FileMesh
  file = rectangle.e
  dim = 2
  uniform_refine = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Materials]
  [./block]
    type = OutputTestMaterial
    block = '1 2'
    output_properties = tensor_property
    variable = u
    outputs = exodus
  [../]
  [./boundary_1]
    type = OutputTestMaterial
    boundary = 1
    output_properties = real_property
    outputs = exodus
    variable = u
    real_factor = 2
  [../]
  [./boundary_2]
    type = OutputTestMaterial
    boundary = 2
    output_properties = 'real_property vector_property'
    real_factor = 2
    variable = u
    outputs = exodus
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/level_set/test/tests/transfers/markers/single_level/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Adaptivity]
  marker = marker
  max_h_level = 1
  [./Markers]
    [./marker]
      type = BoxMarker
      bottom_left = '0.25 0.25 0'
      top_right = '0.75 0.75 0'
      outside =  DO_NOTHING
      inside = REFINE
    [../]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Problem]
  type = LevelSetProblem
[]

[Executioner]
  type = Transient
  num_steps = 2
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = LevelSetReinitializationMultiApp
    input_files = 'sub.i'
    execute_on = TIMESTEP_BEGIN
  [../]
[]

[Transfers]
  [./marker_to_sub]
    type = LevelSetMeshRefinementTransfer
    multi_app = sub
    source_variable = marker
    variable = marker
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/chem13.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Dissolution with temperature, with three primary variables and four reactions, and some zero concnetrations
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0
  [../]
  [./b]
    initial_condition = 0
  [../]
  [./c]
    initial_condition = 0
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1.234
  [../]
  [./eqm_k1]
    initial_condition = 1.999
  [../]
  [./eqm_k2]
    initial_condition = 0.789
  [../]
  [./eqm_k3]
    initial_condition = 1.111
  [../]
  [./ini_sec_conc0]
    initial_condition = 0.02
  [../]
  [./ini_sec_conc1]
    initial_condition = 0.04
  [../]
  [./ini_sec_conc2]
    initial_condition = 0.06
  [../]
  [./ini_sec_conc3]
    initial_condition = 0.08
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = '1E10 2E10 3E10 4E10'
    stoichiometry = '1 1 2 0'
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = '1.1E10 2.2E10 3.3E10 4.4E10'
    stoichiometry = '2 -2 0 0.5'
  [../]
  [./c]
    type = PorousFlowPreDis
    variable = c
    mineral_density = '0.1E10 0.2E10 0.3E10 0.4E10'
    stoichiometry = '3 -3 0 1'
  [../]
  [./temp]
    type = Diffusion
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b c temp'
    number_fluid_phases = 1
    number_fluid_components = 4
    number_aqueous_kinetic = 4
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b c'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b c'
    num_reactions = 4
    equilibrium_constants = 'eqm_k0 eqm_k1 eqm_k2 eqm_k3'
    primary_activity_coefficients = '0.5 0.8 0.9'
    reactions = '0.5 2 3
                 1.5 -2 3
                 2 0 0
                 0 0.5 1'
    specific_reactive_surface_area = '-44.4E-2 22.1E-2 32.1E-1 -50E-2'
    kinetic_rate_constant = '0.678 0.999 1.23 0.3'
    activation_energy = '4.4 3.3 4.5 4.0'
    molar_volume = '3.3 4.4 5.5 6.6'
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = '1.0 1.1 1.2 0.9'
    eta_exponent = '1.2 1.01 1.1 1.2'
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = 'ini_sec_conc0 ini_sec_conc1 ini_sec_conc2 ini_sec_conc3'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

test/tests/outputs/iterative/iterative_inline.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = Exodus
    nonlinear_residual_dt_divisor = 100
    linear_residual_dt_divisor = 100
    nonlinear_residual_start_time = 1.8
    linear_residual_start_time = 1.8
    nonlinear_residual_end_time = 1.85
    linear_residual_end_time = 1.85
  [../]
[]

test/tests/mesh/adapt/adapt_test.i

[Mesh]
  dim = 2
  file = square.e
  uniform_refine = 3
[]

[Variables]
  active = 'u v'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'udiff uconv uie vdiff vconv vie'

  [./udiff]
    type = Diffusion
    variable = u
  [../]

  [./uconv]
    type = Convection
    variable = u
    velocity = '10 1 0'
  [../]

  [./uie]
    type = TimeDerivative
    variable = u
  [../]

  [./vdiff]
    type = Diffusion
    variable = v
  [../]

  [./vconv]
    type = Convection
    variable = v
    velocity = '-10 1 0'
  [../]

  [./vie]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  active = 'uleft uright vleft vright'

  [./uleft]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./uright]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]

  [./vleft]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 1
  [../]

  [./vright]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 2
  dt = .1

  [./Adaptivity]
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
  [../]
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/auxkernels/solution_aux/solution_aux_exodus_elemental_only.i

[Mesh]
  file = cubesource.e
  # The SolutionUserObject uses the copy_nodal_solution() capability
  # of the Exodus reader, and therefore won't work if the initial mesh
  # has been renumbered (it will be reunumbered if you are running with
  # DistributedMesh in parallel).  Hence, we restrict this test to run with
  # ReplicatedMesh only.
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./en]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./en]
    type = SolutionAux
    solution = soln
    variable = en
    scale_factor = 2.0
    from_variable = source_element
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = cubesource.e
    system_variables = 'source_element'
    timestep = 2
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 50
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/time_steppers/function_dt/function_dt_min.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax =  1
  ymin = -1
  ymax =  1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]

  [./dts]
    type = PiecewiseLinear
    x = '0   0.85 2'
    y = '0.2 0.2  0.2'
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  start_time = 0
  num_steps = 10
  [./TimeStepper]
    type = FunctionDT
    function = dts
    min_dt = 0.1
  [../]
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/jacobian_2/jn38.i

# two phase, with RSC Seff
# unsaturated = true

# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 1
  [../]
  [./SeffGas]
    type = RichardsSeff2gasRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 1
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn08
  exodus = false
[]

modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_second/finite_rr.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_rr'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    use_automatic_differentiation = true
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
    extra_vector_tags = 'ref'
  [../]
  [./plank]
    use_automatic_differentiation = true
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
    extra_vector_tags = 'ref'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ADComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
  nl_abs_tol = 1e-12
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/peridynamics/test/tests/simple_tests/2D_regularD_constH_OSPD.i

# Test for ordinary state-based peridynamic formulation
# for regular grid from generated mesh with const bond constants
# partial Jacobian
# Jacobian from bond-based formulation is used for preconditioning

# Square plate with Dirichlet boundary conditions applied
# at the left, top and bottom edges

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1002
    value = 0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1000
    function = '-0.001 * t'
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = ORDINARY_STATE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.0
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialOSPD
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  end_time = 1
[]

[Outputs]
  file_base = 2D_regularD_constH_OSPD
  exodus = true
[]

modules/richards/test/tests/jacobian_2/jn40.i

# two phase with RichardsPolyLineSink
#
# unsaturated = true
# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 0.5E-3'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]

  [./stream_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]



[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[DiracKernels]
  [./stream_water]
    type = RichardsPolyLineSink
    pressures = '-2 2'
    fluxes = '-1E12 1E12'
    point_file = stream.xyz
    SumQuantityUO = stream_total_outflow_mass
    variable = pwater
  [../]
  [./stream_gas]
    type = RichardsPolyLineSink
    pressures = '-2 2'
    fluxes = '1E12 -1.5E12'
    point_file = stream.xyz
    SumQuantityUO = stream_total_outflow_mass
    variable = pgas
  [../]
[]



[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn30
  exodus = false
[]

test/tests/restart/restart_subapp_not_master/two_step_solve_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax =  1
  ymin = -1
  ymax =  1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0.0
  end_time = 2.0
  dt = 1.0
[]

[Outputs]
  [./checkpoint]
    type = Checkpoint
    num_files = 3
  [../]
[]

modules/tensor_mechanics/test/tests/multi/mc_wpt_1.i

# checking for small deformation
# A single element is stretched by 1E-6m in x,y and z directions.
# stress_zz = Youngs Modulus*Strain = 2E6*1E-6 = 2 Pa
# wpt_tensile_strength is set to 1Pa
# Then the final stress should return to the yeild surface and its value should be 1pa.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = disp_x
    boundary = front
    value = 0E-6
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = front
    value = 0E-6
  [../]
  [./topz]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 1E-6
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./mc]
    type = FiniteStrainMultiPlasticity
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
    ep_plastic_tolerance = 1E-9
    plastic_models = 'mc wpt'
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = 1
    debug_jac_at_intnl = 1
    debug_stress_change = 1E-5
    debug_pm_change = 1E-6
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = mc_wpt_1
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/poro_mechanics/jacobian1.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./disp_y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./disp_z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
  [./p]
    type = RandomIC
    min = -1
    max = 1
    variable = porepressure
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./poro]
    type = PoroFullSatTimeDerivative
    variable = porepressure
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '2 3'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./poro_material]
    type = PoroFullSatMaterial
    porosity0 = 0.1
    biot_coefficient = 0.6
    solid_bulk_compliance = 0.25
    fluid_bulk_compliance = 0.125
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jacobian1
  exodus = false
[]

test/tests/transfers/multiapp_copy_transfer/second_lagrange_from_sub/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  elem_type = QUAD8
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/3d_moving_penetration/pl_test2tt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test2tt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test2tt_out
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/pressure/pressure_rz_test.i

#
# Pressure Test
#
# This test is taken from the Abaqus verification manual:
#   "1.3.4 Axisymmetric solid elements"
#
# The two lower nodes are not allowed to translate in the z direction.
# Step 1:
#   Pressure of 1000 is applied on each face.
# Step 2:
#   Step 1 load plus a pressure on the vertical faces that varies from
#   0 to 1000 from top to bottom.
#
# Solution:
# Step 1:
#    Stress xx, yy, zz = -1000
#    Stress xy = 0
# Step 2:
#    Stress xx, zz = -1500
#    Stress yy = -1000
#    Stress xy = 0

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]#Comment
  file = pressure_rz_test.e
[] # Mesh

[Functions]
  [./constant]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1e3
  [../]
  [./vary]
    type = ParsedFunction
    value = 'if(t <= 1, 1000 , 1000+1000*(1-y))'
  [../]
[] # Functions

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = SMALL
    additional_generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  []
[]

[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./Pressure]
    [./Pressure1]
      boundary = '3 4'
      function = constant
    [../]
    [./Pressure2]
      boundary = '1 2'
      function = vary
    [../]
  [../]
[] # BCs

[Materials]
  [./constant]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
  [./constant_stress]
    type = ComputeLinearElasticStress
    block = '1'
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-12

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[] # Executioner

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

modules/richards/test/tests/buckley_leverett/bl01.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 150
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2.0E6
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-4
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]

[AuxKernels]
  active = 'calculate_seff'
  [./calculate_seff]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[BCs]
  active = 'left'
  [./left]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 980000
  [../]
[]

[Kernels]
  active = 'richardsf richardst'

  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[Functions]
 active = 'initial_pressure'
  [./initial_pressure]
    type = ParsedFunction
    value = max((1000000-x/5*1000000)-20000,-20000)
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 20'
  [../]

[]

[Executioner]
  type = Transient
  end_time = 50
  dt = 2
[]

[Outputs]
  file_base = bl01
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

test/tests/transfers/multiapp_copy_transfer/third_monomial_to_sub/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./aux]
    family = MONOMIAL
    order = THIRD
  [../]
[]

[AuxKernels]
  [./aux]
    type = FunctionAux
    function = x*y
    variable = aux
    execute_on = initial
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = sub.i
    execute_on = timestep_end
  [../]
[]

[Transfers]
  [./to_sub]
    type = MultiAppCopyTransfer
    direction = to_multiapp
    source_variable = aux
    variable = u
    multi_app = sub
  [../]
[]

[Outputs]
  hide = 'u'
  exodus = true
[]

test/tests/transfers/multiapp_copy_transfer/constant_monomial_to_sub/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./aux]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./aux]
    type = FunctionAux
    function = x*y
    variable = aux
    execute_on = initial
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = sub.i
    execute_on = timestep_end
  [../]
[]

[Transfers]
  [./to_sub]
    type = MultiAppCopyTransfer
    direction = to_multiapp
    source_variable = aux
    variable = u
    multi_app = sub
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_copy_transfer/second_lagrange_from_sub/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  elem_type = QUAD8
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = sub.i
    execute_on = initial
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppCopyTransfer
    direction = from_multiapp
    source_variable = u
    variable = u
    multi_app = sub
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_3/cyl3_template2_sm.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[Mesh]
  file = cyl3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/phase_field/test/tests/grain_tracker_test/one_grain.i

[Mesh]
  type = GeneratedMesh
  dim = 2 # Problem dimension
  nx = 4
  ny = 4
[]

[Variables]
  [u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1.0
  []
[]

[AuxVariables]
  [halos]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[AuxKernels]
  [halos]
    type = FeatureFloodCountAux
    variable = halos
    flood_counter = grain_tracker
    field_display = HALOS
    execute_on = 'initial timestep_end'
  []
[]

[UserObjects]
  [grain_tracker]
    type = GrainTracker
    variable = 'u'
    compute_halo_maps = true # For displaying HALO fields
    execute_on = 'initial timestep_end'
    verbosity_level = 3
  []
[]


[Executioner]
  type = Transient
  num_steps = 2
[]

[Outputs]
  csv = true
[]

[Problem]
  solve = false
[]

test/tests/outputs/csv/csv_restart_part2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./mid]
    type = PointValue
    variable = u
    point = '0.5 0.5 0'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./csv]
    type = CSV
    file_base = csv_restart_part2_out
  [../]
[]

[Problem]
  restart_file_base = csv_restart_part1_out_cp/0010
[]

test/tests/kernels/simple_transient_diffusion/simple_transient_diffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/fflux08.i

# 1phase, 1component, constant viscosity, Kozeny-Carman permeability
# density with constant bulk, Corey relative perm, nonzero gravity, unsaturated with vanGenuchten
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pp]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
  [./pp]
    type = RandomIC
    variable = pp
    min = -1
    max = 1
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.1
    biot_coefficient = 0.5
    solid_bulk = 1
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityKozenyCarman
    poroperm_function = kozeny_carman_phi0
    k_anisotropy = '1 0 0 0 2 0 0 0 3'
    phi0 = 0.1
    n = 1.0
    m = 2.0
    k0 = 2
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/porous_flow/examples/coal_mining/coarse_with_fluid.i

# Strata deformation and fluid flow aaround a coal mine - 3D model
#
# A "half model" is used.  The mine is 400m deep and
# just the roof is studied (-400<=z<=0).  The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long.  The outer boundaries
# are 1km from the excavation boundaries.
#
# The excavation takes 0.5 years.
#
# The boundary conditions for this simulation are:
#  - disp_x = 0 at x=0 and x=1150
#  - disp_y = 0 at y=-1000 and y=1000
#  - disp_z = 0 at z=-400, but there is a time-dependent
#               Young modulus that simulates excavation
#  - wc_x = 0 at y=-1000 and y=1000
#  - wc_y = 0 at x=0 and x=1150
#  - no flow at x=0, z=-400 and z=0
#  - fixed porepressure at y=-1000, y=1000 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# A single-phase unsaturated fluid is used.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa, and time units are measured in years.
#
# The initial porepressure is hydrostatic with P=0 at z=0, so
# Porepressure ~ - 0.01*z MPa, where the fluid has density 1E3 kg/m^3 and
# gravity = = 10 m.s^-2 = 1E-5 MPa m^2/kg.
# To be more accurate, i use
# Porepressure = -bulk * log(1 + g*rho0*z/bulk)
# where bulk=2E3 MPa and rho0=1Ee kg/m^3.
# The initial stress is consistent with the weight force from undrained
# density 2500 kg/m^3, and fluid porepressure, and a Biot coefficient of 0.7, ie,
# stress_zz^effective = 0.025*z + 0.7 * initial_porepressure
# The maximum and minimum principal horizontal effective stresses are
# assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 2 MPa
# MC friction angle = 35 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
# Fluid density at zero porepressure = 1E3 kg/m^3
# Fluid bulk modulus = 2E3 MPa
# Fluid viscosity = 1.1E-3 Pa.s = 1.1E-9 MPa.s = 3.5E-17 MPa.year
#
[GlobalParams]
  perform_finite_strain_rotations = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
  PorousFlowDictator = dictator
  biot_coefficient = 0.7
[]

[Mesh]
  [file]
    type = FileMeshGenerator
    file = mesh/coarse.e
  []
  [./xmin]
    type = SideSetsAroundSubdomainGenerator
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    new_boundary = xmin
    normal = '-1 0 0'
    input = file
  [../]
  [./xmax]
    type = SideSetsAroundSubdomainGenerator
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    new_boundary = xmax
    normal = '1 0 0'
    input = xmin
  [../]
  [./ymin]
    type = SideSetsAroundSubdomainGenerator
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    new_boundary = ymin
    normal = '0 -1 0'
    input = xmax
  [../]
  [./ymax]
    type = SideSetsAroundSubdomainGenerator
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    new_boundary = ymax
    normal = '0 1 0'
    input = ymin
  [../]
  [./zmax]
    type = SideSetsAroundSubdomainGenerator
    block = 16
    new_boundary = zmax
    normal = '0 0 1'
    input = ymax
  [../]
  [./zmin]
    type = SideSetsAroundSubdomainGenerator
    block = 2
    new_boundary = zmin
    normal = '0 0 -1'
    input = zmax
  [../]
  [./excav]
    type = SubdomainBoundingBoxGenerator
    input = zmin
    block_id = 1
    bottom_left = '0 0 -400'
    top_right = '150 1000 -397'
  [../]
  [./roof]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = 3
    paired_block = 1
    input = excav
    new_boundary = roof
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./porepressure]
    scaling = 1E-5
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = ini_pp
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_y
    component = 1
  [../]
  [./gravity]
    type = Gravity
    use_displaced_mesh = false
    variable = disp_z
    value = -10E-6 # remember this is in MPa
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    use_displaced_mesh = false
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    use_displaced_mesh = false
    component = 2
    variable = disp_z
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    use_displaced_mesh = false
    fluid_component = 0
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    use_displaced_mesh = false
    variable = porepressure
    gravity = '0 0 -10E-6'
    fluid_component = 0
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    use_displaced_mesh = false
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    variable = porepressure
    fluid_component = 0
  [../]
[]


[AuxVariables]
  [./saturation]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./darcy_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./darcy_y]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./darcy_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./darcy_x]
    type = PorousFlowDarcyVelocityComponent
    variable = darcy_x
    gravity = '0 0 -10E-6'
    component = x
  [../]
  [./darcy_y]
    type = PorousFlowDarcyVelocityComponent
    variable = darcy_y
    gravity = '0 0 -10E-6'
    component = y
  [../]
  [./darcy_z]
    type = PorousFlowDarcyVelocityComponent
    variable = darcy_z
    gravity = '0 0 -10E-6'
    component = z
  [../]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
    execute_on = timestep_end
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
    execute_on = timestep_end
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
    execute_on = timestep_end
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./total_strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./total_strain_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./total_strain_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_xz
    index_i = 0
    index_j = 2
    execute_on = timestep_end
  [../]
  [./total_strain_yx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_yx
    index_i = 1
    index_j = 0
    execute_on = timestep_end
  [../]
  [./total_strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./total_strain_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_yz
    index_i = 1
    index_j = 2
    execute_on = timestep_end
  [../]
  [./total_strain_zx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_zx
    index_i = 2
    index_j = 0
    execute_on = timestep_end
  [../]
  [./total_strain_zy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_zy
    index_i = 2
    index_j = 1
    execute_on = timestep_end
  [../]
  [./total_strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./perm_xx]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_xx
    row = 0
    column = 0
    execute_on = timestep_end
  [../]
  [./perm_yy]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_yy
    row = 1
    column = 1
    execute_on = timestep_end
  [../]
  [./perm_zz]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_zz
    row = 2
    column = 2
    execute_on = timestep_end
  [../]
  [./mc_shear]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_internal_parameter
    variable = mc_shear
    execute_on = timestep_end
  [../]
  [./mc_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = mc_plastic_internal_parameter
    variable = mc_tensile
    execute_on = timestep_end
  [../]
  [./wp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_internal_parameter
    variable = wp_shear
    execute_on = timestep_end
  [../]
  [./wp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_internal_parameter
    variable = wp_tensile
    execute_on = timestep_end
  [../]
  [./mc_shear_f]
    type = MaterialStdVectorAux
    index = 6
    property = mc_plastic_yield_function
    variable = mc_shear_f
    execute_on = timestep_end
  [../]
  [./mc_tensile_f]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_yield_function
    variable = mc_tensile_f
    execute_on = timestep_end
  [../]
  [./wp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_yield_function
    variable = wp_shear_f
    execute_on = timestep_end
  [../]
  [./wp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_yield_function
    variable = wp_tensile_f
    execute_on = timestep_end
  [../]
[]



[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'xmin xmax'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'ymin ymax'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = zmin
    value = 0.0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = 'ymin ymax'
    value = 0.0
  [../]
  [./no_wc_y]
    type = DirichletBC
    variable = wc_y
    boundary = 'xmin xmax'
    value = 0.0
  [../]
  [./fix_porepressure]
    type = FunctionDirichletBC
    variable = porepressure
    boundary = 'ymin ymax xmax'
    function = ini_pp
  [../]
  [./roof_porepressure]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    pt_vals = '-1E3 1E3'
    multipliers = '-1 1'
    fluid_phase = 0
    flux_function = roof_conductance
    boundary = roof
  [../]
  [./roof_bcs]
    type = StickyBC
    variable = disp_z
    min_value = -3.0
    boundary = roof
  [../]
[]

[Functions]
  [./ini_pp]
    type = ParsedFunction
    vars = 'bulk p0 g    rho0'
    vals = '2E3 0.0 1E-5 1E3'
    value = '-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)'
  [../]
  [./ini_xx]
    type = ParsedFunction
    vars = 'bulk p0 g    rho0 biot'
    vals = '2E3 0.0 1E-5 1E3  0.7'
    value = '0.8*(2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)))'
  [../]
  [./ini_zz]
    type = ParsedFunction
    vars = 'bulk p0 g    rho0 biot'
    vals = '2E3 0.0 1E-5 1E3  0.7'
    value = '2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk))'
  [../]
  [./excav_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval slope'
    vals = '0.5   0    1000.0 1E-9 1 60'
    # excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
    # slope is the distance over which the modulus reduces from maxval to minval
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
  [../]
  [./density_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval'
    vals = '0.5   0    1000.0 0 2500'
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
  [../]
  [./roof_conductance]
    type = ParsedFunction
    vars = 'end_t ymin ymax   maxval minval'
    vals = '0.5   0    1000.0 1E7      0'
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),maxval,minval)'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1 # MPa^-1
  [../]

  [./mc_coh_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.99 # MPa
    value_residual = 2.01 # MPa
    rate = 1.0
  [../]
  [./mc_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.61 # 35deg
  [../]
  [./mc_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.15 # 8deg
  [../]

  [./mc_tensile_str_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0 # MPa
    value_residual = 1.0 # MPa
    rate = 1.0
  [../]
  [./mc_compressive_str]
    type = TensorMechanicsHardeningCubic
    value_0 = 100 # Large!
    value_residual = 100
    internal_limit = 0.1
  [../]

  [./wp_coh_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.05
    value_residual = 0.05
    internal_limit = 10
  [../]
  [./wp_tan_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.26 # 15deg
  [../]
  [./wp_tan_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.18 # 10deg
  [../]

  [./wp_tensile_str_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.05
    value_residual = 0.05
    internal_limit = 10
  [../]
  [./wp_compressive_str_soften]
    type = TensorMechanicsHardeningCubic
    value_0 = 100
    value_residual = 1
    internal_limit = 1.0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E3
      density0 = 1000
      thermal_expansion = 0
      viscosity = 3.5E-17
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity_bulk]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    ensure_positive = true
    porosity_zero = 0.02
    solid_bulk = 5.3333E3
  [../]
  [./porosity_excav]
    type = PorousFlowPorosityConst
    block = 1
    porosity = 1.0
  [../]
  [./permeability_bulk]
    type = PorousFlowPermeabilityKozenyCarman
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    poroperm_function = kozeny_carman_phi0
    k0 = 1E-15
    phi0 = 0.02
    n = 2
    m = 2
  [../]
  [./permeability_excav]
    type = PorousFlowPermeabilityConst
    block = 1
    permeability = '0 0 0   0 0 0   0 0 0'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 4
    s_res = 0.4
    sum_s_res = 0.4
    phase = 0
  [../]

  [./elasticity_tensor_0]
    type = ComputeLayeredCosseratElasticityTensor
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
  [../]
  [./elasticity_tensor_1]
    type = ComputeLayeredCosseratElasticityTensor
    block = 1
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
    elasticity_tensor_prefactor = excav_sideways
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    eigenstrain_name = ini_stress
    initial_stress = 'ini_xx 0 0  0 ini_xx 0  0 0 ini_zz'
  [../]

  [./stress_0]
    type = ComputeMultipleInelasticCosseratStress
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    inelastic_models = 'mc wp'
    cycle_models = true
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./stress_1]
    type = ComputeMultipleInelasticCosseratStress
    block = 1
    inelastic_models = ''
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedMohrCoulombCosseratStressUpdate
    warn_about_precision_loss = false
    host_youngs_modulus = 8E3
    host_poissons_ratio = 0.25
    base_name = mc
    tensile_strength = mc_tensile_str_strong_harden
    compressive_strength = mc_compressive_str
    cohesion = mc_coh_strong_harden
    friction_angle = mc_fric
    dilation_angle = mc_dil
    max_NR_iterations = 100000
    smoothing_tol = 0.1 # MPa  # Must be linked to cohesion
    yield_function_tol = 1E-9 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    warn_about_precision_loss = false
    base_name = wp
    cohesion = wp_coh_harden
    tan_friction_angle = wp_tan_fric
    tan_dilation_angle = wp_tan_dil
    tensile_strength = wp_tensile_str_harden
    compressive_strength = wp_compressive_str_soften
    max_NR_iterations = 10000
    tip_smoother = 0.05
    smoothing_tol = 0.05 # MPa  # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0E-3
  [../]


  [./undrained_density_0]
    type = GenericConstantMaterial
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    prop_names = density
    prop_values = 2500
  [../]
  [./undrained_density_1]
    type = GenericFunctionMaterial
    block = 1
    prop_names = density
    prop_values = density_sideways
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Postprocessors]
  [./min_roof_disp]
    type = NodalExtremeValue
    boundary = roof
    value_type = min
    variable = disp_z
  [../]
  [./min_roof_pp]
    type = NodalExtremeValue
    boundary = roof
    value_type = min
    variable = porepressure
  [../]
  [./min_surface_disp]
    type = NodalExtremeValue
    boundary = zmax
    value_type = min
    variable = disp_z
  [../]
  [./min_surface_pp]
    type = NodalExtremeValue
    boundary = zmax
    value_type = min
    variable = porepressure
  [../]
  [./max_perm_zz]
    type = ElementExtremeValue
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    variable = perm_zz
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options = '-snes_converged_reason'

  # best overall
  # petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  # petsc_options_value = ' lu       mumps'

  # best if you do not have mumps:
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = ' lu       superlu_dist'

  # best if you do not have mumps or superlu_dist:
  #petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  #petsc_options_value = ' asm      2              lu            gmres     200'

  # very basic:
  #petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
  #petsc_options_value = ' bjacobi  gmres     200'

  line_search = bt

  nl_abs_tol = 1e-3
  nl_rel_tol = 1e-5

  l_max_its = 200
  nl_max_its = 30

  start_time = 0.0
  dt = 0.014706
  end_time = 0.014706 #0.5
[]

[Outputs]
  interval = 1
  print_linear_residuals = true
  exodus = true
  csv = true
  console = true
[]

modules/phase_field/test/tests/phase_field_kernels/SplitCahnHilliard.i

#
# Test the split parsed function free enery Cahn-Hilliard Bulk kernel
# The free energy used here has the same functional form as the SplitCHPoly kernel
# If everything works, the output of this test should replicate the output
# of marmot/tests/chpoly_test/CHPoly_Cu_Split_test.i (exodiff match)
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0
  xmax = 60
  ymin = 0
  ymax = 60
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0
      y1 = 0
      radius = 30.0
      invalue = 1.0
      outvalue = -0.5
      int_width = 30.0
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '100 40'
  [../]

  [./free_energy]
    # equivalent to `MathFreeEnergy`
    type = DerivativeParsedMaterial
    f_name = F
    args = 'c'
    function = '0.25*(1+c)^2*(1-c)^2'
    derivative_order = 2
  [../]
[]

[Preconditioning]
  # active = ' '
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = 'NEWTON'
  petsc_options_iname = -pc_type
  petsc_options_value = lu

  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 2

  dt = 1
[]

[Outputs]
  exodus = true
[]

test/tests/materials/output/limited_via_outputs.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 10
  ymax = 10
  uniform_refine = 1
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 10
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./test_material]
    type = OutputTestMaterial
    block = 0
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    output_material_properties = true
    show_material_properties = 'real_property vector_property'
  [../]
[]

modules/tensor_mechanics/test/tests/multi/paper3.i

# This runs the third example models described in the 'MultiSurface' plasticity paper
# Just change the deactivation_scheme
#
# Plasticity models:
# Mohr-Coulomb with cohesion = 40MPa, friction angle = 35deg, dilation angle = 5deg
# Tensile with strength = 1MPa
# WeakPlaneTensile with strength = 1000Pa
# WeakPlaneShear with cohesion = 0.1MPa and friction angle = 25, dilation angle = 5deg
#
# Lame lambda = 1.2GPa.  Lame mu = 1.2GPa (Young = 3GPa, poisson = 0.5)
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[GlobalParams]
  volumetric_locking_correction=true
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./linesearch]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ld]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./constr_added]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./linesearch]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = linesearch
  [../]
  [./ld]
    type = MaterialRealAux
    property = plastic_linear_dependence_encountered
    variable = ld
  [../]
  [./constr_added]
    type = MaterialRealAux
    property = plastic_constraints_added
    variable = constr_added
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./max_iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console csv'
  [../]
  [./av_linesearch]
    type = ElementAverageValue
    variable = linesearch
    outputs = 'console csv'
  [../]
  [./av_ld]
    type = ElementAverageValue
    variable = ld
    outputs = 'console csv'
  [../]
  [./av_constr_added]
    type = ElementAverageValue
    variable = constr_added
    outputs = 'console csv'
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 4E7
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    yield_function_tolerance = 1.0
    shift = 1.0
    internal_constraint_tolerance = 1.0E-7
  [../]
  [./mc_smooth]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4E6
    yield_function_tolerance = 1.0
    internal_constraint_tolerance = 1.0E-7
  [../]

  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./tensile]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = ts
    yield_function_tolerance = 1.0
    shift = 1.0
    internal_constraint_tolerance = 1.0E-7
    use_custom_returnMap = false
    use_custom_cto = false
  [../]
  [./tensile_smooth]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    tensile_tip_smoother = 1E5
    yield_function_tolerance = 1.0
    internal_constraint_tolerance = 1.0E-7
  [../]

  [./wpt_str]
    type = TensorMechanicsHardeningConstant
    value = 1.0E3
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = wpt_str
    yield_function_tolerance = 1.0
    internal_constraint_tolerance = 1.0E-7
  [../]

  [./wps_c]
    type = TensorMechanicsHardeningConstant
    value = 1.0E5
  [../]
  [./wps_tan_phi]
    type = TensorMechanicsHardeningConstant
    value = 0.466
  [../]
  [./wps_tan_psi]
    type = TensorMechanicsHardeningConstant
    value = 0.087
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = wps_c
    tan_friction_angle = wps_tan_phi
    tan_dilation_angle = wps_tan_psi
    smoother = 1.0E4
    yield_function_tolerance = 1.0
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1.2E9 1.2E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-7

    plastic_models = 'tensile_smooth mc_smooth wpt wps'
    max_NR_iterations = 30
    specialIC = 'none'
    deactivation_scheme = 'optimized'
    min_stepsize = 1E-6
    max_stepsize_for_dumb = 1E-2

    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1 1'
    debug_jac_at_intnl = '1 1 1 1'
    debug_stress_change = 1E1
    debug_pm_change = '1E-6 1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = paper3
  exodus = false
  csv = true
[]

modules/combined/test/tests/solid_mechanics/Wave_1_D/Rayleigh_HHT/wave_bc_1d.i

# Wave propogation in 1-D using HHT time integration in the presence
# of Rayleigh damping
#
# The test is for an 1-D bar element of length 4m fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the
# other end.  alpha, beta and gamma are HHT time integration
# parameters eta and zeta are mass dependent and stiffness dependent
# Rayleigh damping coefficients, respectively.  The equation of motion
# in terms of matrices is:
#
# M*accel + (eta*M+zeta*K)*((1+alpha)*vel-alpha*vel_old)+(1+alpha)*K*disp-alpha*K*disp_old = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# The displacement at the first, second, third and fourth node at t = 0.1 are
# -7.787499960311491942e-02, 1.955566679096475483e-02 and -4.634888180231294501e-03, respectively.
[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./DynamicTensorMechanics]
    use_displaced_mesh = false
    zeta = 0.1
    alpha = -0.3
  [../]

 [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.422
    gamma = 0.8
    eta=0.1
    alpha = -0.3
    use_displaced_mesh = false
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.422
    gamma = 0.8
    eta=0.1
    alpha = -0.3
    use_displaced_mesh = false
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.422
    gamma = 0.8
    eta = 0.1
    alpha = -0.3
    use_displaced_mesh = false
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.8
    execute_on = timestep_end
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
   type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
    [./bottom_x]
      type = DirichletBC
      variable = disp_x
      boundary = bottom
      value=0.0
    [../]
    [./bottom_z]
      type = DirichletBC
      variable = disp_z
      boundary = bottom
      value=0.0
    [../]
    [./bottom_y]
      type = FunctionDirichletBC
      variable = disp_y
      boundary = bottom
      function = displacement_bc
    [../]
[]

[Materials]
  [./constant]
    type = ComputeIsotropicElasticityTensor
    block = '0'
    youngs_modulus = 1.0
    poissons_ratio = 0.0
  [../]

  [./constant_strain]
    type= ComputeFiniteStrain
    block = '0'
  [../]
  [./constant_stress]
    type = ComputeFiniteStrainElasticStress
    block = '0'
  [../]
  [./density]
    type = GenericConstantMaterial
    block = '0'
    prop_names = 'density'
    prop_values = '1'
  [../]
[]


[Executioner]

  type = Transient
  start_time = 0
  end_time = 6.0
  dtmax = 0.1
  dtmin = 0.1
  l_tol = 1e-8
  nl_rel_tol = 1e-8
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.001 1 0.001 0.0 0.0'
    scale_factor = 7750
  [../]
  [./displacement_ic]
    type = PiecewiseLinear
    axis = y
    x = '0.0 0.3 0.4 0.5 0.6 0.7 1.0'
    y = '0.0 0.0 0.0001 1.0 0.0001 0.0 0.0'
    scale_factor = 0.1
  [../]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
    [./disp_1]
       type = NodalVariableValue
       nodeid = 1
       variable = disp_y
     [../]
    [./disp_2]
       type = NodalVariableValue
       nodeid = 3
       variable = disp_y
     [../]
    [./disp_3]
       type = NodalVariableValue
       nodeid = 10
       variable = disp_y
     [../]
    [./disp_4]
       type = NodalVariableValue
       nodeid = 14
       variable = disp_y
     [../]
[]

[Outputs]
  exodus = true
  csv = true
  print_linear_residuals = true
  perf_graph = true
[]

modules/porous_flow/test/tests/heat_mass_transfer/variable_transfer_variable_0D.i


[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[Variables]
  [./u]
    initial_condition = 1
  [../]
[]

[AuxVariables]
  [./v]
    initial_condition = 10
  [../]
  [./c]
    initial_condition = 1e-1
  [../]
[]

[Kernels]
  [./u_dot]
    type = TimeDerivative
    variable = u
  [../]
  [./value_transfer]
    type = PorousFlowHeatMassTransfer
    variable = u
    v = v
    transfer_coefficient = c
  [../]
[]

[Postprocessors]
  [./point_value]
    type = PointValue
    variable = u
    point = '0.5 0.5 0.'
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  num_steps = 11
  dt = 1
[]


[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/beam/static/euler_pipe_axial_force.i

# Test for small strain Euler beam axial loading in x direction.

# Modeling a pipe with an OD of 10 inches and ID of 8 inches
# The length of the pipe is 5 feet (60 inches) and E = 30e6
# G = 11.5384615385e6 with nu = 0.3
# The applied axial load is 50000 lb which results in a
# displacement of 3.537e-3 inches at the end

# delta = PL/AE = 50000 * 60 / pi (5^2 - 4^2) * 30e6 = 3.537e-3

# In this analysis the applied force is used as a BC

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 60.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_x2]
    type = ConstantRate
    variable = disp_x
    boundary = right
    rate = 50000.0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    shear_coefficient = 1.0
    youngs_modulus = 30e6
    poissons_ratio = 0.3
    block = 0
    outputs = exodus
    output_properties = 'material_stiffness material_flexure'
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 28.274
    Ay = 0.0
    Az = 0.0
    Iy = 1.0
    Iz = 1.0
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
    outputs = exodus
    output_properties = 'forces moments'
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '60.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '60.0 0.0 0.0'
    variable = disp_y
  [../]
  [./forces_x]
    type = PointValue
    point = '60.0 0.0 0.0'
    variable = forces_x
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/phase_field/test/tests/grain_growth/boundingbox.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1000
  zmin = 0
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 2
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalBoundingBoxIC]
      x1 = 0
      y1 = 0
      x2 = 500
      y2 = 1000
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 # m^4/(Js) from Schoenfelder 1997
    Q = 0.23 # Migration energy in eV
    GBenergy = 0.708 # GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./gr1area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 10
  dt = 80.0
  [./Adaptivity]
    initial_adaptivity = 2
    refine_fraction = 0.8
    coarsen_fraction = 0.05
    max_h_level = 2
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  csv = true
  exodus = true
[]

modules/xfem/test/tests/solid_mechanics_basic/sm/elliptical_crack.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  file = quarter_sym.e
  displacements = 'disp_x disp_y disp_z'
[]

[UserObjects]
  [./ellip_cut_uo]
    type = EllipseCutUserObject
    cut_data = '-0.5 -0.5 0
                -0.5 -0.1 0
                 0.1 -0.5 0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  []

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./top_trac_z]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_z]
    type = FunctionNeumannBC
    boundary = 2
    variable = disp_z
    function = top_trac_z
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = 1
    variable = disp_z
    value = 0.0
  [../]
  [./sym_y]
    type = DirichletBC
    boundary = 3
    variable = disp_y
    value = 0.0
  [../]
  [./sym_x]
    type = DirichletBC
    boundary = 4
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 207000
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = elliptical_crack_out
  exodus = true
  execute_on = timestep_end
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/functions/image_function/image.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 10
  nz = 10
[]

[Adaptivity]
  max_h_level = 5
  initial_steps = 5
  initial_marker = marker
  [./Indicators]
    [./indicator]
      type = GradientJumpIndicator
      variable = u
    [../]
  [../]
  [./Markers]
    [./marker]
      type = ErrorFractionMarker
      indicator = indicator
      refine = 0.9
    [../]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file = stack/test_00.png
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[../]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

python/mms/test/mms_temporal.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 8
  ny = 8
[]

[Variables]
  [u][]
[]

[Kernels]
  [time]
    type = ADTimeDerivative
    variable = u
  []
  [diff]
    type = ADDiffusion
    variable = u
  []
  [force]
    type = BodyForce
    variable = u
    function = force
  []
[]

[Functions]
  [exact]
    type = ParsedFunction
    value = 't^3*x*y'
  []
  [force]
    type = ParsedFunction
    value = '3*x*y*t^2'
  []
[]

[BCs]
  [all]
    type = FunctionDirichletBC
    variable = u
    function = exact
    boundary = 'left right top bottom'
  []
[]

[Postprocessors]
  [error]
    type = ElementL2Error
    function = exact
    variable = u
  []
  [h]
    type = AverageElementSize
  []
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 3
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/combined/test/tests/simple_contact/sm/simple_contact_rspherical_dirac_sm.i

#
# This is similar to the patch test for 1D spherical elements with the
#   addition of a contact interface.
#
# The 1D mesh is pinned at x=0.  The displacement at the outer node is set to
#   -3e-3*X where X is the x-coordinate of that node.  That gives a strain of
#   -3e-3 for the x, y, and z directions.
#
# Young's modulus is 1e6, and Poisson's ratio is 0.25.  This gives:
#
# Stress xx, yy, zz = E/(1+nu)/(1-2nu)*strain*((1-nu) + nu + nu) = -6000
#

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]
  file = simple_contact_rspherical.e
  construct_side_list_from_node_list = true
[]

[GlobalParams]
  displacements = 'disp_x'
  volumetric_locking_correction = false
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '-3e-3*x'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '1 4'
    function = ur
  [../]
[]

[Contact]
  [./fred]
    master = 2
    slave = 3
    system = DiracKernel
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    formulation = SphericalR
    block = '1 2 3'

    disp_r = disp_x

    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-11

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_postprocessor_to_scalar/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = CoefDiffusion
    variable = u
    coef = 0.01
  []
  [td]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Postprocessors]
  [average]
    type = ElementAverageValue
    variable = u
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  num_steps = 5
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [pp_sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0.5 0.5 0 0.7 0.7 0'
    execute_on = timestep_end
    input_files = sub.i
  []
[]

[Transfers]
  [pp_transfer]
    type = MultiAppPostprocessorToAuxScalarTransfer
    direction = to_multiapp
    multi_app = pp_sub
    from_postprocessor = average
    to_aux_scalar = from_master_app
  []
[]

test/tests/transfers/multiapp_postprocessor_interpolation_transfer/sub0.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/materials/stateful_prop/stateful_prop_test.i

[Mesh]
  dim = 3
  file = cube.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./prop1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = MatDiffusionTest
    variable = u
    prop_name = thermal_conductivity
    prop_state = 'old'                  # Use the "Old" value to compute conductivity
  [../]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./prop1_output]
    type = MaterialRealAux
    variable = prop1
    property = thermal_conductivity
  [../]

  [./prop1_output_init]
    type = MaterialRealAux
    variable = prop1
    property = thermal_conductivity
    execute_on = initial
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0.0
  [../]
  [./top]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1.0
  [../]
[]

[Materials]
  [./stateful]
    type = StatefulTest
    prop_names = thermal_conductivity
    prop_values = 1.0
  [../]
[]

[Postprocessors]
  [./integral]
    type = ElementAverageValue
    variable = prop1
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  l_max_its = 10
  start_time = 0.0
  num_steps = 5
  dt = .1
[]

[Outputs]
  file_base = out
  exodus = true
  csv = true
[]

modules/xfem/test/tests/diffusion_xfem/levelsetcut3d.i

# 3D: Mesh is cut by level set based cutter
# The level set is a MOOSE auxvariable

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 1.0
  elem_type = HEX8
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '0  0.1'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = 'sqrt(x*x + y*y + z*z) - 0.5'
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = left
    value = 2
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/examples/phase_field-mechanics/poly_grain_growth_2D_eldrforce.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  nz = 0
  xmax = 1000
  ymax = 1000
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 2
[]

[GlobalParams]
  op_num = 8
  var_name_base = gr
  grain_num = 36
[]

[Variables]
  [./PolycrystalVariables]
  [../]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[UserObjects]
  [./euler_angle_file]
    type = EulerAngleFileReader
    file_name = grn_36_rand_2D.tex
  [../]
  [./voronoi]
    type = PolycrystalVoronoi
    coloring_algorithm = bt
  [../]
  [./grain_tracker]
    type = GrainTrackerElasticity
    threshold = 0.2
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
    flood_entity_type = ELEMENTAL

    C_ijkl = '1.27e5 0.708e5 0.708e5 1.27e5 0.708e5 1.27e5 0.7355e5 0.7355e5 0.7355e5'
    fill_method = symmetric9
    euler_angle_provider = euler_angle_file
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./elastic_strain11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain22]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain12]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./C1111]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./euler_angle]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
  [./PolycrystalElasticDrivingForce]
  [../]
  [./TensorMechanics]
    use_displaced_mesh = true
    displacements = 'disp_x disp_y'
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
  [./elastic_strain11]
    type = RankTwoAux
    variable = elastic_strain11
    rank_two_tensor = elastic_strain
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./elastic_strain22]
    type = RankTwoAux
    variable = elastic_strain22
    rank_two_tensor = elastic_strain
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./elastic_strain12]
    type = RankTwoAux
    variable = elastic_strain12
    rank_two_tensor = elastic_strain
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    execute_on = timestep_end
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    execute_on = timestep_end
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
  [../]
  [./C1111]
    type = RankFourAux
    variable = C1111
    rank_four_tensor = elasticity_tensor
    index_l = 0
    index_j = 0
    index_k = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./vonmises_stress]
    type = RankTwoScalarAux
    variable = vonmises_stress
    rank_two_tensor = stress
    scalar_type = VonMisesStress
    execute_on = timestep_end
  [../]
  [./euler_angle]
    type = OutputEulerAngles
    variable = euler_angle
    euler_angle_provider = euler_angle_file
    grain_tracker = grain_tracker
    output_euler_angle = 'phi1'
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x'
      variable = 'gr0 gr1 gr2 gr3 gr4 gr5 gr6 gr7'
    [../]
  [../]
  [./top_displacement]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = -50.0
  [../]
  [./x_anchor]
    type = DirichletBC
    variable = disp_x
    boundary = 'left right'
    value = 0.0
  [../]
  [./y_anchor]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    block = 0
    T = 500 # K
    wGB = 15 # nm
    GBmob0 = 2.5e-6 # m^4/(Js) from Schoenfelder 1997
    Q = 0.23 # Migration energy in eV
    GBenergy = 0.708 # GB energy in J/m^2
  [../]
  [./ElasticityTensor]
    type = ComputePolycrystalElasticityTensor
    grain_tracker = grain_tracker
  [../]
  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]
[]

[Postprocessors]
  [./ngrains]
    type = FeatureFloodCount
    variable = bnds
    threshold = 0.7
  [../]
  [./dofs]
    type = NumDOFs
  [../]
  [./dt]
    type = TimestepSize
  [../]
  [./run_time]
    type = PerfGraphData
    section_name = "Root"
    data_type = total
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    coupled_groups = 'disp_x,disp_y'
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -pc_hypre_boomeramg_strong_threshold'
  petsc_options_value = 'hypre boomeramg 31 0.7'
  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 25
  nl_rel_tol = 1.0e-7
  start_time = 0.0
  num_steps = 50
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1.5
    growth_factor = 1.2
    cutback_factor = 0.8
    optimal_iterations = 8
  [../]
  [./Adaptivity]
    initial_adaptivity = 2
    refine_fraction = 0.8
    coarsen_fraction = 0.05
    max_h_level = 3
  [../]
[]

[Outputs]
  file_base = poly36_grtracker
  exodus = true
[]

modules/combined/test/tests/internal_volume/rz_displaced_quad8_sm.i

#
# Volume Test
#
# This test is designed to compute the volume of a space when displacements
#   are imposed.
#
# The mesh is composed of one block (1) with two elements.  The mesh is
#   such that the initial volume is 1.  One element face is displaced to
#   produce a final volume of 2.
#
#     r1
#   +----+   -
#   |    |   |
#   +----+   h    V1 = pi * h * r1^2
#   |    |   |
#   +----+   -
#
#   becomes
#
#   +----+
#   |     \
#   +------+      v2 = pi * h/2 * ( r2^2 + 1/3 * ( r2^2 + r2*r1 + r1^2 ) )
#   |      |
#   +------+
#      r2
#
#   r1 = 1
#   r2 = 1.5380168369562588
#   h  = 1/pi
#
#  Note:  Because the InternalVolume PP computes cavity volumes as positive,
#         the volumes reported are negative.
#
[GlobalParams]
  volumetric_locking_correction = false
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = meshes/rz_displaced_quad8.e
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./disp_x]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.5380168369562588'
  [../]
  [./disp_x2]
    type = PiecewiseLinear
    scale_factor = 0.5
    x = '0. 1.'
    y = '0. 0.5380168369562588'
  [../]
[]

[Variables]
  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]

  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./x]
    type = FunctionDirichletBC
    boundary = 3
    variable = disp_x
    function = disp_x
  [../]
  [./x2]
    type = FunctionDirichletBC
    boundary = 4
    variable = disp_x
    function = disp_x2
  [../]
[]

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
    formulation = NonlinearRZ
    increment_calculation = Eigen
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 2
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_3/brick3_template2.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick3_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_x
  [../]
  [./disp_x33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_x
  [../]
  [./disp_y28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_y
  [../]
  [./disp_y33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-7
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x28 disp_y28 disp_x33 disp_y33 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+7
    al_penetration_tolerance = 1e-8
  [../]
[]

test/tests/kernels/ode/ode_expl_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 5
  ny = 5
  elem_type = QUAD4
[]

[Functions]
  [./f_fn]
    type = ParsedFunction
    value = -4
  [../]
  [./bc_all_fn]
    type = ParsedFunction
    value = x*x+y*y
  [../]
[]

# NL

[Variables]
  [./u]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./uff]
    type = BodyForce
    variable = u
    function = f_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = bc_all_fn
  [../]
[]

# Aux

[AuxVariables]
  [./y]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  [../]
[]

[AuxScalarKernels]
  [./ode1]
    type = ExplicitODE
    variable = y
  [../]
[]

[Postprocessors]
  [./y]
    type = ScalarVariable
    variable = y
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  dt = 0.1
  num_steps = 10
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/examples/thm_example/2D.i

# Two phase, temperature-dependent, with mechanics, radial with fine mesh, constant injection of cold co2 into a overburden-reservoir-underburden containing mostly water
# species=0 is water
# species=1 is co2
# phase=0 is liquid, and since massfrac_ph0_sp0 = 1, this is all water
# phase=1 is gas, and since massfrac_ph1_sp0 = 0, this is all co2
#
# The mesh used below has very high resolution, so the simulation takes a long time to complete.
# Some suggested meshes of different resolution:
# nx=50, bias_x=1.2
# nx=100, bias_x=1.1
# nx=200, bias_x=1.05
# nx=400, bias_x=1.02
# nx=1000, bias_x=1.01
# nx=2000, bias_x=1.003
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2000
  bias_x = 1.003
  xmin = 0.1
  xmax = 5000
  ny = 1
  ymin = 0
  ymax = 11
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
  PorousFlowDictator = dictator
  gravity = '0 0 0'
  biot_coefficient = 1.0
[]

[Variables]
  [./pwater]
    initial_condition = 18.3e6
  [../]
  [./sgas]
    initial_condition = 0.0
  [../]
  [./temp]
    initial_condition = 358
  [../]
  [./disp_r]
  [../]
[]

[AuxVariables]
  [./rate]
  [../]
  [./disp_z]
  [../]
  [./massfrac_ph0_sp0]
    initial_condition = 1 # all H20 in phase=0
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0 # no H2O in phase=1
  [../]
  [./pgas]
    family = MONOMIAL
    order = FIRST
  [../]
  [./swater]
    family = MONOMIAL
    order = FIRST
  [../]
  [./stress_rr]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_tt]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./mass_water_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    use_displaced_mesh = false
    variable = pwater
  [../]
  [./flux_water]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    use_displaced_mesh = false
    variable = pwater
  [../]
  [./mass_co2_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    use_displaced_mesh = false
    variable = sgas
  [../]
  [./flux_co2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    use_displaced_mesh = false
    variable = sgas
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    use_displaced_mesh = false
    variable = temp
  [../]
  [./advection]
    type = PorousFlowHeatAdvection
    use_displaced_mesh = false
    variable = temp
  [../]
  [./conduction]
    type = PorousFlowExponentialDecay
    use_displaced_mesh = false
    variable = temp
    reference = 358
    rate = rate
  [../]
  [./grad_stress_r]
    type = StressDivergenceRZTensors
    temperature = temp
    thermal_eigenstrain_name = thermal_contribution
    variable = disp_r
    use_displaced_mesh = false
    component = 0
  [../]
  [./poro_r]
    type = PorousFlowEffectiveStressCoupling
    variable = disp_r
    use_displaced_mesh = false
    component = 0
  [../]
[]

[AuxKernels]
  [./rate]
    type = FunctionAux
    variable = rate
    execute_on = timestep_begin
    function = decay_rate
  [../]
  [./pgas]
    type = PorousFlowPropertyAux
    property = pressure
    phase = 1
    variable = pgas
  [../]
  [./swater]
    type = PorousFlowPropertyAux
    property = saturation
    phase = 0
    variable = swater
  [../]
  [./stress_rr]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_rr
    index_i = 0
    index_j = 0
  [../]
  [./stress_tt]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_tt
    index_i = 2
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 1
    index_j = 1
  [../]
[]

[Functions]
  [./decay_rate]
# Eqn(26) of the first paper of LaForce et al.
# Ka * (rho C)_a = 10056886.914
# h = 11
    type = ParsedFunction
    value = 'sqrt(10056886.914/t)/11.0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pwater sgas disp_r'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./water]
      type = SimpleFluidProperties
      bulk_modulus = 2.27e14
      density0 = 970.0
      viscosity = 0.3394e-3
      cv = 4149.0
      cp = 4149.0
      porepressure_coefficient = 0.0
      thermal_expansion = 0
    [../]
    [./co2]
      type = SimpleFluidProperties
      bulk_modulus = 2.27e14
      density0 = 516.48
      viscosity = 0.0393e-3
      cv = 2920.5
      cp = 2920.5
      porepressure_coefficient = 0.0
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = pwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./water]
    type = PorousFlowSingleComponentFluid
    fp = water
    phase = 0
  [../]
  [./gas]
    type = PorousFlowSingleComponentFluid
    fp = co2
    phase = 1
  [../]
  [./porosity_reservoir]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability_reservoir]
    type = PorousFlowPermeabilityConst
    permeability = '2e-12 0 0  0 0 0  0 0 0'
  [../]
  [./relperm_liquid]
    type = PorousFlowRelativePermeabilityCorey
    n = 4
    phase = 0
    s_res = 0.200
    sum_s_res = 0.405
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityBC
    phase = 1
    s_res = 0.205
    sum_s_res = 0.405
    nw_phase = true
    lambda = 2
  [../]
  [./thermal_conductivity_reservoir]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '0 0 0  0 1.320 0  0 0 0'
    wet_thermal_conductivity = '0 0 0  0 3.083 0  0 0 0'
  [../]
  [./internal_energy_reservoir]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1100
    density = 2350.0
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    shear_modulus = 6.0E9
    poissons_ratio = 0.2
  [../]
  [./strain]
    type = ComputeAxisymmetricRZSmallStrain
    eigenstrain_names = 'thermal_contribution ini_stress'
  [../]
  [./ini_strain]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-12.8E6 0 0  0 -51.3E6 0  0 0 -12.8E6'
    eigenstrain_name = ini_stress
  [../]
  [./thermal_contribution]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    stress_free_temperature = 358
    thermal_expansion_coeff = 5E-6
    eigenstrain_name = thermal_contribution
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
[]

[BCs]
  [./outer_pressure_fixed]
    type = DirichletBC
    boundary = right
    value = 18.3e6
    variable = pwater
  [../]
  [./outer_saturation_fixed]
    type = DirichletBC
    boundary = right
    value = 0.0
    variable = sgas
  [../]
  [./outer_temp_fixed]
    type = DirichletBC
    boundary = right
    value = 358
    variable = temp
  [../]
  [./fixed_outer_r]
    type = DirichletBC
    variable = disp_r
    value = 0
    boundary = right
  [../]
  [./co2_injection]
    type = PorousFlowSink
    boundary = left
    variable = sgas
    use_mobility = false
    use_relperm = false
    fluid_phase = 1
    flux_function = 'min(t/100.0,1)*(-2.294001475)' # 5.0E5 T/year = 15.855 kg/s, over area of 2Pi*0.1*11
  [../]
  [./cold_co2]
    type = DirichletBC
    boundary = left
    variable = temp
    value = 294
  [../]
  [./cavity_pressure_x]
    type = Pressure
    boundary = left
    variable = disp_r
    component = 0
    postprocessor = p_bh # note, this lags
    use_displaced_mesh = false
  [../]
[]

[Postprocessors]
  [./p_bh]
    type = PointValue
    variable = pwater
    point = '0.1 0 0'
    execute_on = timestep_begin
    use_displaced_mesh = false
  [../]
[]

[VectorPostprocessors]
  [./ptsuss]
    type = LineValueSampler
    use_displaced_mesh = false
    start_point = '0.1 0 0'
    end_point = '5000 0 0'
    sort_by = x
    num_points = 50000
    outputs = csv
    variable = 'pwater temp sgas disp_r stress_rr stress_tt'
  [../]
[]

[Preconditioning]
  active = 'mumps'
  [./smp]
    type = SMP
    full = true
    #petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E2       1E-5        500'
  [../]
  [./mumps]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -pc_factor_mat_solver_package -pc_factor_shift_type -snes_rtol -snes_atol -snes_max_it'
    petsc_options_value = 'gmres      lu       mumps                         NONZERO               1E-5       1E2       50'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1.5768e8
  #dtmax = 1e6
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    growth_factor = 1.1
  [../]
[]

[Outputs]
  print_linear_residuals = false
  sync_times = '3600 86400 2.592E6 1.5768E8'
  perf_graph = true
  exodus = true
  [./csv]
    type = CSV
    sync_only = true
  [../]
[]

modules/stochastic_tools/test/tests/transfers/monte_carlo/monte_carlo.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 10
    distributions = 'uniform_left uniform_right'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
    execute_on = INITIAL
    check_multiapp_execute_on = false
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

test/tests/vectorpostprocessors/least_squares_fit_history/least_squares_fit_history.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = 't'
  [../]
  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = left
    function = 't'
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[VectorPostprocessors]
  [./line_sample]
    type = LineValueSampler
    variable = 'u v'
    start_point = '0 0.5 0'
    end_point = '1 0.5 0'
    num_points = 11
    sort_by = id
    outputs = none
  [../]
  [./least_squares_fit_coeffs]
    type = LeastSquaresFitHistory
    vectorpostprocessor = line_sample
    x_name = 'id'
    y_name = 'u'
    order = 1
  [../]
  [./shift_and_scale_x_least_squares_fit_coeffs]
    type = LeastSquaresFitHistory
    vectorpostprocessor = line_sample
    x_name = 'id'
    y_name = 'u'
    x_shift = 1
    x_scale = 10
    order = 1
  [../]
  [./shift_and_scale_y_least_squares_fit_coeffs]
    type = LeastSquaresFitHistory
    vectorpostprocessor = line_sample
    x_name = 'id'
    y_name = 'u'
    y_shift = 1
    y_scale = 10
    order = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0.0
  num_steps = 3
  dt = 1.0
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  file_base = out
  execute_on = 'timestep_end'
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian/cwp06.i

# Capped weak-plane plasticity
# checking jacobian for shear failure, with smoothing
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 1
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 1.0
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.1
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 100
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 1  0 0 -1  1 -1 0'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 1
    smoothing_tol = 2
    yield_function_tol = 1E-10
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/catch_release/sm/catch_release_sm.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = catch_release.e
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1 2.00 3 4'
    y = '0 1 1.01 1 0'
    scale_factor = 0.5
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = frictionless
    system = Constraint
  [../]
[]

[BCs]
  [./lateral]
    type = DirichletBC
    variable = disp_x
    boundary = '1 4'
    value = 0.0
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    function = up
  [../]

  [./out]
    type = DirichletBC
    variable = disp_z
    boundary = '1 4'
    value = 0.0
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  #petsc_options_iname = '-pc_type -snes_type -snes_ls -snes_linesearch_type -ksp_gmres_restart'
  #petsc_options_value = 'ilu      ls         basic    basic                    101'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-4
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 20
  dt = 1.0
  end_time = 4.0
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/normalized_penalty/sm/normalized_penalty_Q8_sm.i

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  order = SECOND
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Mesh]
  file = normalized_penalty_Q8.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Functions]
  [./left_x]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 0.02 0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    extra_vector_tags = 'ref'
  [../]
[]

[Contact]
  [./m3_s2]
    master = 3
    slave = 2
    penalty = 1e10
    normalize_penalty = true
    formulation = penalty
    tangential_tolerance = 1e-3
    system = Constraint
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./left_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = left_x
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2 3 4'
    value = 0.0
  [../]

  [./right]
    type = DirichletBC
    variable = disp_x
    boundary = '3 4'
    value = 0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = '1 2 3 4 1000'

    youngs_modulus = 3e8
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-12
  nl_abs_tol = 5e-8

  l_max_its = 100
  nl_max_its = 20
  dt = 0.5
  num_steps = 4
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/torque_reaction/torque_reaction_cylinder.i

# This test uses the DisplacementAboutAxis boundary condition to twist the top
# of a cylinder while the bottom face of the cylinder remains fixed.  The
# TorqueReaction postprocessor is used to calculate the applied torque acting
# on the cylinder at the top face.  This test can be extended, with a new mesh,
# to model a crack in the center of the cylinder face under type III loading.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = cylinder.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[GlobalParams]
  volumetric_locking_correction=true
[]

[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
[]

[Functions]
  [./rampConstantAngle]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 0.1
  [../]
[]

[Kernels]
  [./TensorMechanics]
    save_in = 'saved_x saved_y saved_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
  [./top_x]
    type = DisplacementAboutAxis
    boundary = 2
    function = rampConstantAngle
    angle_units = degrees
    axis_origin = '10. 10. 10.'
    axis_direction = '0 -1.0 1.0'
    component = 0
    variable = disp_x
  [../]
  [./top_y]
    type = DisplacementAboutAxis
    boundary = 2
    function = rampConstantAngle
    angle_units = degrees
    axis_origin = '10. 10. 10.'
    axis_direction = '0 -1.0 1.0'
    component = 1
    variable = disp_y
  [../]
  [./top_z]
    type = DisplacementAboutAxis
    boundary = 2
    function = rampConstantAngle
    angle_units = degrees
    axis_origin = '10. 10. 10.'
    axis_direction = '0 -1.0 1.0'
    component = 2
    variable = disp_z
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 1
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
    block = 1
  [../]
[]

[Executioner]

  type = Transient
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-12
  nl_rel_tol = 1e-11
  l_tol = 1e-10

  start_time = 0.0
  dt = 0.25

  end_time = 0.5
[]

[Postprocessors]
  [./torque]
    type = TorqueReaction
    boundary = 2
    reaction_force_variables = 'saved_x saved_y saved_z'
    axis_origin = '10. 10. 10.'
    direction_vector = '0 -1.0 1.0'
  [../]
[]

[Outputs]
  file_base = torque_reaction_cylinder_out
  exodus = true
[]

python/chigger/tests/simple/mug_blocks.i

[Mesh]
  type = FileMesh
  file = mug.e
[]

[MeshModifiers]
  [./subdomains]
    type = SubdomainBoundingBox
    top_right = '3 3 3'
    bottom_left = '0 -3 -2.1'
    block_id = '76'
  [../]
[]

[Variables]
  [./convected]
    order = FIRST
    family = LAGRANGE
  [../]
  [./diffused]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./aux_elem]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff_convected]
    type = Diffusion
    variable = convected
  [../]
  [./conv]
    # Couple a variable into the convection kernel using local_name = simulationg_name syntax
    type = Convection
    variable = convected
    velocity = '1 1 1'
  [../]
  [./diff_diffused]
    type = Diffusion
    variable = diffused
  [../]
  [./diff_t]
    type = TimeDerivative
    variable = diffused
  [../]
  [./conv_t]
    type = TimeDerivative
    variable = convected
    block = '76'
  [../]
[]

[BCs]
  [./bottom_convected]
    type = DirichletBC
    variable = convected
    boundary = bottom
    value = 1
  [../]
  [./top_convected]
    type = DirichletBC
    variable = convected
    boundary = top
    value = 0
  [../]
  [./bottom_diffused]
    type = DirichletBC
    variable = diffused
    boundary = bottom
    value = 2
  [../]
  [./top_diffused]
    type = DirichletBC
    variable = diffused
    boundary = top
    value = 0
  [../]
[]

[Postprocessors]
  [./func_pp]
    type = FunctionValuePostprocessor
    function = 2*t
  [../]
[]

[Executioner]
  # Preconditioned JFNK (default)
  type = Transient
  num_steps = 20
  solve_type = PJFNK
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

[ICs]
  [./aux_ic]
    variable = aux_elem
    max = 10
    seed = 2
    type = RandomIC
  [../]
[]

examples/ex07_ics/transient.i

[Mesh]
  file = half-cone.e
[]

[Variables]
  [./diffused]
    order = FIRST
    family = LAGRANGE

    # Use the initial Condition block underneath the variable
    # for which we want to apply this initial condition
    [./InitialCondition]
      type = ExampleIC
      coefficient = 2.0
    [../]
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = diffused
  [../]

  [./diff]
    type = Diffusion
    variable = diffused
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = diffused
    boundary = 'top'
    value = 2
  [../]

  [./right]
    type = DirichletBC
    variable = diffused
    boundary = 'bottom'
    value = 8
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  start_time = 0
  num_steps = 10

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


[]

[Outputs]
  # Request that we output the initial condition so we can inspect
  # the values with our visualization tool
  exodus = true
[]

modules/combined/test/tests/beam_eigenstrain_transfer/subapp_err_4.i

# SubApp with 2D model to test multi app vectorpostprocessor to aux var transfer

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 5
  xmin = 0.0
  xmax = 0.5
  ymin = 0.0
  ymax = 0.150080
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./temp]
  [../]
  [./axial_strain]
    order = FIRST
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t*(500.0)+300.0
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = SMALL
        incremental = true
        add_variables = true
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
  [../]
  [./axial_strain]
    type = RankTwoAux
    variable = axial_strain
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 298
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-9

  start_time = 0.0
  end_time = 0.075
  dt = 0.0125
  dtmin = 0.0001
[]

[Outputs]
  csv = true
  exodus = true
[]

[VectorPostprocessors]
  [./axial_str]
    type = LineValueSampler
    start_point = '0.5 0.0 0.0'
    end_point = '0.5 0.1 0.0'
    variable = axial_strain
    num_points = 21
    sort_by = 'id'
  [../]
[]

[Postprocessors]
  [./end_disp]
    type = PointValue
    variable = disp_y
    point = '0.5 0.150080 0.0'
  [../]
[]

modules/tensor_mechanics/test/tests/rom_stress_update/3d.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temperature]
    initial_condition = 900.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'vonmises_stress'
    use_automatic_differentiation = true
  [../]
[]

[BCs]
  [./symmy]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = ADDirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./pressure_x]
    type = ADPressure
    variable = disp_x
    component = 0
    boundary = right
    constant = 1.0e5
  [../]
  [./pressure_y]
    type = ADPressure
    variable = disp_y
    component = 1
    boundary = top
    constant = -1.0e5
  [../]
  [./pressure_z]
    type = ADPressure
    variable = disp_z
    component = 2
    boundary = front
    constant = -1.0e5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 3.30e11
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ADComputeMultipleInelasticStress
    inelastic_models = rom_stress_prediction
  [../]
  [./rom_stress_prediction]
    type = SS316HLAROMANCEStressUpdateTest
    temperature = temperature
    initial_mobile_dislocation_density = 6.0e12
    initial_immobile_dislocation_density = 4.4e11
    outputs = all
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  nl_abs_tol = 1e-12
  automatic_scaling = true
  compute_scaling_once = false

  num_steps = 5
[]

[Postprocessors]
  [./effective_strain_avg]
    type = ElementAverageValue
    variable = effective_creep_strain
  [../]
  [./temperature]
    type = ElementAverageValue
    variable = temperature
  [../]
  [./mobile_dislocations]
    type = ElementAverageValue
    variable = mobile_dislocations
  [../]
  [./immobile_disloactions]
    type = ElementAverageValue
    variable = immobile_dislocations
  [../]
[]

[Outputs]
  csv = true
[]

test/tests/outputs/csv/csv_align.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux0]
    order = SECOND
    family = SCALAR
  [../]
  [./aux1]
    family = SCALAR
    initial_condition = 5
  [../]
  [./aux2]
    family = SCALAR
    initial_condition = 10
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./right_u]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]

[]

[Postprocessors]
  [./num_vars]
    type = NumVars
    system = 'NL'
  [../]
  [./num_aux]
    type = NumVars
    system = 'AUX'
  [../]
  [./norm]
    type = ElementL2Norm
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  num_steps = 4
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = CSV
    align = true
    delimiter = ', '
    sync_times = '0.123456789123412 0.15 0.2'
    precision = 8
  [../]
[]

[ICs]
  [./aux0_IC]
    variable = aux0
    values = '12 13'
    type = ScalarComponentIC
  [../]
[]

modules/porous_flow/test/tests/chemistry/2species_equilibrium.i

# PorousFlow analogy of chemical_reactions/test/tests/aqueous_equilibrium/2species.i
#
# Simple equilibrium reaction example to illustrate the use of PorousFlowMassFractionAqueousEquilibriumChemistry
#
# In this example, two primary species a and b are transported by diffusion and convection
# from the left of the porous medium, reacting to form two equilibrium species pa2 and pab
# according to the equilibrium reaction:
#
#      reactions = '2a = pa2     rate = 10^2
#                   a + b = pab  rate = 10^-2'
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1.0e-10
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1E2
  [../]
  [./eqm_k1]
    initial_condition = 1E-2
  [../]
  [./pressure]
  [../]
  [./pa2]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./pab]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./pa2]
    type = PorousFlowPropertyAux
    property = secondary_concentration
    secondary_species = 0
    variable = pa2
  [../]
  [./pab]
    type = PorousFlowPropertyAux
    property = secondary_concentration
    secondary_species = 1
    variable = pab
  [../]
[]

[ICs]
  [./pressure]
    type = FunctionIC
    variable = pressure
    function = 2-x
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Kernels]
  [./mass_a]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = a
  [../]
  [./flux_a]
    type = PorousFlowFullySaturatedDarcyFlow
    variable = a
    fluid_component = 0
  [../]
  [./diff_a]
    type = PorousFlowDispersiveFlux
    variable = a
    fluid_component = 0
    disp_trans = 0
    disp_long = 0
  [../]
  [./mass_b]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = b
  [../]
  [./flux_b]
    type = PorousFlowFullySaturatedDarcyFlow
    variable = b
    fluid_component = 1
  [../]
  [./diff_b]
    type = PorousFlowDispersiveFlux
    variable = b
    fluid_component = 1
    disp_trans = 0
    disp_long = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_equilibrium = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9 # huge, so mimic chemical_reactions
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'a b'
    num_reactions = 2
    equilibrium_constants = 'eqm_k0 eqm_k1'
    primary_activity_coefficients = '1 1'
    secondary_activity_coefficients = '1 1'
    reactions = '2 0
                 1 1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    # porous_flow permeability / porous_flow viscosity = chemical_reactions conductivity = 1E-4
    permeability = '1E-7 0 0 0 1E-7 0 0 0 1E-7'
  [../]
  [./relp]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    # porous_flow diffusion_coeff * tortuousity * porosity = chemical_reactions diffusivity = 1E-4
    diffusion_coeff = '5E-4 5E-4 5E-4'
    tortuosity = 1.0
  [../]
[]

[BCs]
  [./a_left]
    type = DirichletBC
    variable = a
    boundary = left
    value = 1.0e-2
  [../]
  [./b_left]
    type = DirichletBC
    variable = b
    boundary = left
    value = 1.0e-2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 10
  end_time = 100
[]

[Outputs]
  print_linear_residuals = true
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/jacobian/cosserat01.i

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  active = 'cx_elastic cy_elastic cz_elastic x_moment y_moment z_moment'
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./TensorMechanics]
    displacements = 'wc_x wc_y wc_z'
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
  [./z_moment]
    type = MomentBalancing
    variable = wc_z
    component = 2
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeCosseratElasticityTensor
    B_ijkl = 0.5
    E_ijkl = '1 2 1.3333'
    fill_method = 'general_isotropic'
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/mean_cap_TC/small_deform6.i

# apply nonuniform stretch in x, y and z directions using
# Lame lambda = 0.7E7, Lame mu = 1.0E7,
# trial_stress(0, 0) = 2.9
# trial_stress(1, 1) = 10.9
# trial_stress(2, 2) = 14.9
# With tensile_strength = 2, decaying to zero at internal parameter = 4E-7
# via a Cubic, the algorithm should return to:
# internal parameter = 2.26829E-7
# trace(stress) = 0.799989 = tensile_strength
# stress(0, 0) = -6.4
# stress(1, 1) = 1.6
# stress(2, 2) = 5.6

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1E-7*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '3E-7*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '5E-7*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
[]

[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 2
    value_residual = 0
    internal_limit = 4E-7
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = -1
    value_residual = 0
    internal_limit = 1E-8
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
    use_custom_returnMap = true
    use_custom_cto = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mean_cap]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-11
    plastic_models = cap
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform6
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_3/cyl3_mu_0_2_pen.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = cyl3_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = cyl3_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = cyl3_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

test/tests/postprocessors/cumulative_value_postprocessor/cumulative_value_postprocessor.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./time_derivative]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  scheme = implicit-euler

  [./TimeStepper]
    type = ConstantDT
    dt = 0.01
  [../]

  start_time = 0.0
  num_steps = 2

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
[]

[Postprocessors]
  [./nonlin_it]
    type = NumNonlinearIterations
  [../]
  [./cumulative_nonlin_it]
    type = CumulativeValuePostprocessor
    postprocessor = nonlin_it
  [../]
[]

[Outputs]
  csv = true
[]

modules/peridynamics/test/tests/jacobian_check/generalized_planestrain_thermomechanics_OSPD.i


# NOTE: this jacobian test for the coupled thermomechanical model must use displaced mesh, otherwise the difference for the first step is huge

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
  scalar_out_of_plane_strain = scalar_strain_zz
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 0.5
  [../]

  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/Peridynamics/Mechanics]
  [./Master]
    [./all]
      formulation = ORDINARY_STATE
    [../]
  [../]
  [./GeneralizedPlaneStrain]
    [./all]
      formulation = ORDINARY_STATE
      out_of_plane_stress_variable = stress_zz
    [../]
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConductionBPD
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = NodalRankTwoPD
    variable = stress_zz

    poissons_ratio = 0.3
    youngs_modulus = 1e6
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5

    rank_two_tensor = stress
    output_type = component
    index_i = 2
    index_j = 2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialOSPD
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
  [../]
  [./thermal_mat]
    type = ThermalConstantHorizonMaterialBPD
    thermal_conductivity = 1.0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1
[]

modules/solid_mechanics/test/tests/j_integral/j_integral_2d_topo_q_func.i

#This tests the J-Integral evaluation capability.
#This is a 2d plane strain model
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
[]

[Mesh]
  file = crack2d.e
  displacements = 'disp_x disp_y'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  q_function_type = Topology
  ring_first = 1
  ring_last = 4
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = j_integral_2d_topo_q_func_out
  exodus = true
  csv = true
[]

modules/xfem/test/tests/solid_mechanics_basic/elliptical_crack.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  file = quarter_sym.e
[]

[UserObjects]
  [./ellip_cut_uo]
    type = EllipseCutUserObject
    cut_data = '-0.5 -0.5 0
                -0.5 -0.1 0
                 0.1 -0.5 0'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[Functions]
  [./top_trac_z]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_z]
    type = FunctionNeumannBC
    boundary = 2
    variable = disp_z
    function = top_trac_z
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = 1
    variable = disp_z
    value = 0.0
  [../]
  [./sym_y]
    type = DirichletBC
    boundary = 3
    variable = disp_y
    value = 0.0
  [../]
  [./sym_x]
    type = DirichletBC
    boundary = 4
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = elliptical_crack_out
  exodus = true
  execute_on = timestep_end
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/xfem/test/tests/single_var_constraint_2d/propagating_1field.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.0'
    time_start_cut = 0.0
    time_end_cut = 2.0
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0
    jump_flux = 0
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/materials/stateful_internal_side_uo/internal_side_uo_stateful.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  ymin = -1
  xmax = 1
  ymax = 1
  nx = 2
  ny = 2
  elem_type = QUAD4
[]

[Functions]
  [./fn_exact]
    type = ParsedFunction
    value = 'x*x+y*y'
  [../]

  [./ffn]
    type = ParsedFunction
    value = -4
  [../]
[]

[UserObjects]
  [./isuo]
    type = InsideUserObject
    variable = u
    diffusivity = diffusivity
    execute_on = 'initial timestep_end'
#    use_old_prop = true # Access a stateful material on an internal side
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = ffn
  [../]

  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = fn_exact
  [../]
[]

[Postprocessors]
  [./value]
    type = InsideValuePPS
    user_object = isuo
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  num_steps = 5
[]

[Materials]
  [./stateful]
    type = StatefulMaterial
    block = 0
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/parser/cli_multiapp_all/dt_from_master_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1 # This will be constrained by the master solve

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

tutorials/darcy_thermo_mech/step05_heat_conduction/problems/step5c_outflow.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 10
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
[]

[Variables]
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[Kernels]
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
[]

[BCs]
  [inlet_temperature]
    type = DirichletBC
    variable = temperature
    boundary = left
    value = 350 # (K)
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = right
  []
[]

[Materials]
  [steel]
    type = GenericConstantMaterial
    prop_names = 'thermal_conductivity specific_heat density'
    prop_values = '18 466 8000' # W/m*K, J/kg-K, kg/m^3 @ 296K
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  num_steps = 10
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/denergy03.i

# 2phase, 1 component, with solid displacements, time derivative of energy-density, TM porosity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pgas]
  [../]
  [./pwater]
  [../]
  [./temp]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
  [./pgas]
    type = RandomIC
    variable = pgas
    max = 1.0
    min = 0.0
  [../]
  [./pwater]
    type = RandomIC
    variable = pwater
    max = 0.0
    min = -1.0
  [../]
  [./temp]
    type = RandomIC
    variable = temp
    max = 1.0
    min = 0.0
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./dummy_pgas]
    type = Diffusion
    variable = pgas
  [../]
  [./dummy_pwater]
    type = Diffusion
    variable = pwater
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas temp pwater disp_x disp_y disp_z'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      cv = 1.3
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      cv = 0.7
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./porosity]
    type = PorousFlowPorosity
    thermal = true
    mechanical = true
    porosity_zero = 0.7
    thermal_expansion_coeff = 0.5
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.1
    density = 0.5
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = pgas
    capillary_pressure = pc
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/kernels/2d_diffusion/2d_diffusion_bodyforce_test.i

###########################################################
# This is a simple test of the Kernel System.
# It solves the Laplacian equation on a small 2x2 grid.
# The "Diffusion" kernel is used to calculate the
# residuals of the weak form of this operator. The
# "BodyForce" kernel is used to apply a time-dependent
# volumetric source.
###########################################################

[Mesh]
  file = square.e
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./bf]
    type = BodyForce
    variable = u
    postprocessor = ramp
  [../]
[]

[Functions]
  [./ramp]
    type = ParsedFunction
    value = 't'
  [../]
[]

[Postprocessors]
  [./ramp]
    type = FunctionValuePostprocessor
    function = ramp
    execute_on = linear
  [../]
[]

[BCs]
  active = 'left right'

  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  dt = 1.0
  end_time = 1.0

  solve_type = 'NEWTON'
[]

[Outputs]
  file_base = bodyforce_out
  exodus = true
[]

test/tests/test_harness/csvdiff_comparison.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [./x_field]
    type = PointValue
    variable = u
    point = '0.5 0.5 0'
  [../]
  [./y_field]
    type = PointValue
    variable = u
    point = '0.25 0.25 0'
  [../]
  [./z_field]
    type = PointValue
    variable = u
    point = '0.75 0.75 0'
  [../]
[]

[Outputs]
  csv = true
[]

test/tests/controls/real_function_control/multi_real_function_control.i

###########################################################
# This is a test of the Control Logic System. This test
# uses the RealFunctionControl to change a multiple Kernel
# coefficients based on an analytical function at the end
# of each timestep.
#
# @Requirement F8.10
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./diff_u]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time_u]
    type = TimeDerivative
    variable = u
  [../]
  [./diff_v]
    type = CoefDiffusion
    variable = v
    coef = 0.2
  [../]
  [./time_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

[Functions]
  [./func_coef]
    type = ParsedFunction
    value = '2*t + 0.1'
  [../]
[]

[Postprocessors]
  [./u_coef]
    type = RealControlParameterReporter
    parameter = 'Kernels/diff_u/coef'
  [../]
  [./v_coef]
    type = RealControlParameterReporter
    parameter = 'Kernels/diff_v/coef'
  [../]
[]

[Controls]
  [./func_control]
    type = RealFunctionControl
    parameter = '*/*/coef'
    function = 'func_coef'
    execute_on = 'timestep_begin'
  [../]
[]

modules/solid_mechanics/test/tests/strain_energy_density/incr_model.i

# Single element test to check the strain energy density calculation

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 2
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -100
  [../]
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./strain_xx]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = strain_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = strain_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./strain_zz]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = strain_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0.0
  [../]
  [./Pressure]
    [./top]
      boundary = 'top'
      function = rampConstantUp
    [../]
  [../]
[]

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    youngs_modulus = 30e6
    poissons_ratio = 0.3
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
  [../]
[]

[Executioner]
   type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 3e-7
   nl_rel_tol = 1e-12
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1
[]

[Postprocessors]
  [./epxx]
    type = ElementalVariableValue
    variable = strain_xx
    elementid = 0
  [../]
  [./epyy]
    type = ElementalVariableValue
    variable = strain_yy
    elementid = 0
  [../]
  [./epzz]
    type = ElementalVariableValue
    variable = strain_zz
    elementid = 0
  [../]
  [./sigxx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./sigyy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigzz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./SED]
    type = ElementAverageValue
    variable = SED
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

test/tests/meshgenerators/lower_d_block_generator/ids.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 10
  []

  [./lower_d_block]
    type = LowerDBlockFromSidesetGenerator
    input = gmg
    new_block_id = 10
    sidesets = '0 0 1 2 3'
  []
[]

[Variables]
  [./u]
    block = 0
  [../]
  [./v]
    block = 10
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
    block = 0
  [../]
  [./srcv]
    type = BodyForce
    block = 10
    variable = v
    function = 1
  [../]
  [./time_v]
    type = TimeDerivative
    block = 10
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/DerivativeSumMaterial/DerivativeSumMaterial.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmin = 0
  xmax = 250
  ymin = 0
  ymax = 250
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 125.0
      y1 = 125.0
      radius = 80.0
      invalue = 1.0
      outvalue = 0.1
      int_width = 80.0
    [../]
  [../]
[]

[Kernels]
  [./w_res]
    type = Diffusion
    variable = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./free_energy1]
    type = DerivativeParsedMaterial
    f_name = Fa
    args = 'c'
    function = (c-0.1)^4*(1-0.1-c)^4
  [../]
  [./free_energy2]
    type = DerivativeParsedMaterial
    f_name = Fb
    args = 'c'
    function = -0.25*(c-0.1)^4*(1-0.1-c)^4
  [../]

  # Fa+Fb+Fb == Fc
  [./free_energy3]
    type = DerivativeParsedMaterial
    f_name = Fc
    args = 'c'
    function = 0.5*(c-0.1)^4*(1-0.1-c)^4
  [../]

  [./free_energy]
    type = DerivativeSumMaterial
    f_name = F
    sum_materials = 'Fa Fb Fb'
    args = 'c'
    outputs = exodus
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = 'NEWTON'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 1

  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/check_error/contact_displacements_sm.i

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Contact]
  [./fred]
    master = 1
    slave = 2
    displacements = 'disp_x disp_y disp_z'
    system = Constraint
  [../]
[]

[Materials]
  [./goo]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/time_steppers/iteration_adaptive/adapt_tstep_shrink_init_dt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmax = 5
[]

[Variables]
  [u]
    order = FIRST
    family = LAGRANGE
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [dt]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 10
  []
  [right]
    type = NeumannBC
    variable = u
    boundary = right
    value = -1
  []
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  start_time = 0.0
  dtmin = 1.0
  end_time = 10.0
  [TimeStepper]
    type = IterationAdaptiveDT
    optimal_iterations = 1
    linear_iteration_ratio = 1
    dt = 5.0
  []
[]

[Postprocessors]
  [_dt]
    type = TimestepSize
  []
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  checkpoint = true
[]

modules/porous_flow/test/tests/actions/basicthm_thm.i

# PorousFlowBasicTHM action with coupling_type = ThermoHydroMechanicalGenerator

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 3
    xmax = 10
    ymax = 3
  []
  [./aquifer]
    input = gen
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 1 0'
    top_right = '10 2 0'
  [../]
  [./injection_area]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = 'injection_area'
    normal = '-1 0 0'
    input = 'aquifer'
  [../]
  [./outflow_area]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = 'outflow_area'
    normal = '1 0 0'
    input = 'injection_area'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caprock aquifer'
    input = 'outflow_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y'
  biot_coefficient = 1.0
[]

[Variables]
  [./porepressure]
    initial_condition = 1e6
  [../]
  [./temperature]
    initial_condition = 293
    scaling = 1e-6
  [../]
  [./disp_x]
    scaling = 1e-6
  [../]
  [./disp_y]
    scaling = 1e-6
  [../]
[]

[PorousFlowBasicTHM]
  porepressure = porepressure
  temperature = temperature
  coupling_type = ThermoHydroMechanical
  gravity = '0 0 0'
  fp = simple_fluid
  thermal_eigenstrain_name = thermal_contribution
  use_displaced_mesh = false
  add_stress_aux = false
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1.5e6
    boundary = injection_area
  [../]
  [./constant_injection_temperature]
    type = DirichletBC
    variable = temperature
    value = 313
    boundary = injection_area
  [../]
  [./constant_outflow_porepressure]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = outflow_area
    pt_vals = '0 1e9'
    multipliers = '0 1e9'
    flux_function = 1e-6
    PT_shift = 1e6
  [../]
  [./constant_outflow_temperature]
    type = DirichletBC
    variable = temperature
    value = 293
    boundary = outflow_area
  [../]
  [./top_bottom]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'top bottom'
  [../]
  [./right]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = right
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.8
    solid_bulk_compliance = 2e-7
    fluid_bulk_modulus = 1e7
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1e-13 0 0   0 1e-13 0   0 0 1e-13'
  [../]
  [./permeability_caprock]
    type = PorousFlowPermeabilityConst
    block = caprock
    permeability = '1e-15 0 0   0 1e-15 0   0 0 1e-15'
  [../]
  [./thermal_expansion]
    type = PorousFlowConstantThermalExpansionCoefficient
    drained_coefficient = 0.003
    fluid_coefficient = 0.0002
  [../]
  [./rock_internal_energy]
    type = PorousFlowMatrixInternalEnergy
    density = 2500.0
    specific_heat_capacity = 1200.0
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '10 0 0  0 10 0  0 0 10'
    block = 'caprock aquifer'
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 5e9
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeSmallStrain
    eigenstrain_names = thermal_contribution
  [../]
  [./thermal_contribution]
    type = ComputeThermalExpansionEigenstrain
    temperature = temperature
    thermal_expansion_coeff = 0.001
    eigenstrain_name = thermal_contribution
    stress_free_temperature = 293
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1e4
  dt = 1e3
  nl_abs_tol = 1e-12
  nl_rel_tol = 1E-10
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/multi/three_surface04.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 0.8E-6m in y direction and 1.5E-6 in z direction.
# trial stress_yy = 0.8 and stress_zz = 1.5
#
# Then SimpleTester0 and SimpleTester2 should activate and the algorithm will return to
# the corner stress_yy=0.5, stress_zz=1
# internal0 should be 0.2, and internal2 should be 0.3

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.8E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.5E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface04
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/xfem/test/tests/second_order_elements/diffusion_quad9_levelsetcut.i

# A simple diffusion problem with quad9 elements
# The mesh is cut using levle set based cutter

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  elem_type = QUAD9
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '3   5'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = 'x-0.53'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 3
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/functions/piecewise_multilinear/twoDb.i

# PiecewiseMultilinear function tests in 2D
# The spatial grid is 1<=x<=5 and 1<=y<=5
# At t<=1 a disk of radius 0.5 sits at (x,y)=(1.45,1.45): it has f=1.  Elsewhere f=0
# At t>=0 a disk of radius 0.5 sits at (x,y)=(4,55,4,55): it has f=1.  Elsewhere f=0
# The disks' centers were chosen specially so that the disk partially sits outside the grid
# which illustrates the extrapolation process used by GriddedData and PiecewiseMultilinear
[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 6
  nx = 60
  ymin = 0
  ymax = 6
  ny = 60
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./moving_disk_var]
  [../]
[]

[AuxKernels]
  [./moving_disk_AuxK]
    type = FunctionAux
    variable = moving_disk_var
    function = moving_disk_fcn
  [../]
[]


[Functions]
  [./moving_disk_fcn]
    type = PiecewiseMultilinear
    data_file = twoD2.txt
  [../]
[]


[Executioner]
  type = Transient
  dt = 0.5
  end_time = 10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = twoDb
  hide = dummy
  exodus = true
  csv = true
[]

test/tests/multiapps/picard_multilevel/picard_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./v2]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./coupled_force]
    type = CoupledForce
    variable = v
    v = v2
  [../]
  [./td_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub2]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = picard_sub2.i
    sub_cycling = true
    execute_on = timestep_end
  [../]
[]

[Transfers]
  [./v2]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub2
    source_variable = v
    variable = v2
  [../]
[]

test/tests/transfers/multiapp_mesh_function_transfer/missing_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    positions = '0.9 0.5 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = tosub_sub.i
    execute_on = timestep_end
  [../]
[]

[Transfers]
  [./to_sub]
    source_variable = u
    direction = to_multiapp
    variable = transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
    error_on_miss = true
  [../]
  [./elemental_to_sub]
    source_variable = u
    direction = to_multiapp
    variable = elemental_transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
    error_on_miss = true
  [../]
[]

test/tests/time_steppers/iteration_adaptive/adapt_tstep_shrink_init_dt_restart.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmax = 5
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 10
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = -1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dtmin = 1.0
  end_time = 25.0
  [./TimeStepper]
    type = IterationAdaptiveDT
    optimal_iterations = 1
    linear_iteration_ratio = 1
    dt = 2.0
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

[Problem]
  restart_file_base = adapt_tstep_shrink_init_dt_out_cp/LATEST
[]

modules/combined/examples/mortar/eigenstrain_action.i

#
# Eigenstrain with Mortar gradient periodicity
#

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 50
    ny = 50
    xmin = -0.5
    xmax = 0.5
    ymin = -0.5
    ymax = 0.5
  []
  [./cnode]
    input = gen
    type = ExtraNodesetGenerator
    coord = '0.0 0.0'
    new_boundary = 100
  [../]
  [./anode]
    input = cnode
    type = ExtraNodesetGenerator
    coord = '0.0 0.5'
    new_boundary = 101
  [../]
[]

[Modules/PhaseField/MortarPeriodicity]
  [./strain]
    variable = 'disp_x disp_y'
    periodicity = gradient
    periodic_directions = 'x y'
  [../]
[]

[GlobalParams]
  derivative_order = 2
  enable_jit = true
  displacements = 'disp_x disp_y'
[]

# AuxVars to compute the free energy density for outputting
[AuxVariables]
  [./local_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./local_free_energy]
    type = TotalFreeEnergy
    block = 0
    execute_on = 'initial LINEAR'
    variable = local_energy
    interfacial_vars = 'c'
    kappa_names = 'kappa_c'
  [../]
[]

[Variables]
  # Solute concentration variable
  [./c]
    [./InitialCondition]
      type = RandomIC
      min = 0.49
      max = 0.51
    [../]
    block = 0
  [../]
  [./w]
    block = 0
  [../]

  # Mesh displacement
  [./disp_x]
    block = 0
  [../]
  [./disp_y]
    block = 0
  [../]
[]

[Kernels]
  # Set up stress divergence kernels
  [./TensorMechanics]
  [../]

  # Cahn-Hilliard kernels
  [./c_dot]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
[]

[Materials]
  # declare a few constants, such as mobilities (L,M) and interface gradient prefactors (kappa*)
  [./consts]
    type = GenericConstantMaterial
    block = '0'
    prop_names  = 'M   kappa_c'
    prop_values = '0.2 0.01   '
  [../]

  [./shear1]
    type = GenericConstantRankTwoTensor
    block = 0
    tensor_values = '0 0 0 0 0 0.5'
    tensor_name = shear1
  [../]
  [./shear2]
    type = GenericConstantRankTwoTensor
    block = 0
    tensor_values = '0 0 0 0 0 -0.5'
    tensor_name = shear2
  [../]
  [./expand3]
    type = GenericConstantRankTwoTensor
    block = 0
    tensor_values = '1 1 0 0 0 0'
    tensor_name = expand3
  [../]

  [./weight1]
    type = DerivativeParsedMaterial
    block = 0
    function = '0.3*c^2'
    f_name = weight1
    args = c
  [../]
  [./weight2]
    type = DerivativeParsedMaterial
    block = 0
    function = '0.3*(1-c)^2'
    f_name = weight2
    args = c
  [../]
  [./weight3]
    type = DerivativeParsedMaterial
    block = 0
    function = '4*(0.5-c)^2'
    f_name = weight3
    args = c
  [../]

  # matrix phase
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '1 1'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y'
  [../]

  [./eigenstrain]
    type = CompositeEigenstrain
    block = 0
    tensors = 'shear1  shear2  expand3'
    weights = 'weight1 weight2 weight3'
    args = c
    eigenstrain_name = eigenstrain
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]

  # chemical free energies
  [./chemical_free_energy]
    type = DerivativeParsedMaterial
    block = 0
    f_name = Fc
    function = '4*c^2*(1-c)^2'
    args = 'c'
    outputs = exodus
    output_properties = Fc
  [../]

  # elastic free energies
  [./elastic_free_energy]
    type = ElasticEnergyMaterial
    f_name = Fe
    block = 0
    args = 'c'
    outputs = exodus
    output_properties = Fe
  [../]

  # free energy (chemical + elastic)
  [./free_energy]
    type = DerivativeSumMaterial
    block = 0
    f_name = F
    sum_materials = 'Fc Fe'
    args = 'c'
  [../]
[]

[BCs]
  [./Periodic]
    [./up_down]
      primary = top
      secondary = bottom
      translation = '0 -1 0'
      variable = 'c w'
    [../]
    [./left_right]
      primary = left
      secondary = right
      translation = '1 0 0'
      variable = 'c w'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = disp_x
    value = 0
  [../]
  [./centerfix_y]
    type = DirichletBC
    boundary = 100
    variable = disp_y
    value = 0
  [../]

  # fix side point x coordinate to inhibit rotation
  [./angularfix]
    type = DirichletBC
    boundary = 101
    variable = disp_x
    value = 0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

# We monitor the total free energy and the total solute concentration (should be constant)
[Postprocessors]
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    block = 0
    execute_on = 'initial TIMESTEP_END'
    variable = local_energy
  [../]
  [./total_solute]
    type = ElementIntegralVariablePostprocessor
    block = 0
    execute_on = 'initial TIMESTEP_END'
    variable = c
  [../]
  [./min]
    type = ElementExtremeValue
    block = 0
    execute_on = 'initial TIMESTEP_END'
    value_type = min
    variable = c
  [../]
  [./max]
    type = ElementExtremeValue
    block = 0
    execute_on = 'initial TIMESTEP_END'
    value_type = max
    variable = c
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  line_search = basic

  # mortar currently does not support MPI parallelization
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = ' lu       NONZERO               1e-10'

  l_max_its = 30
  nl_max_its = 12

  l_tol = 1.0e-4

  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 200

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.01
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  print_linear_residuals = false
  exodus = true
  [./table]
    type = CSV
    delimiter = ' '
  [../]
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_added_mass2.i

# Test for small strain euler beam vibration in y direction

# An impulse load is applied at the end of a cantilever beam of length 5ft (60 in).
# The beam is massless with a lumped mass at the end of the beam of 5000 lb
# The properties of the cantilever beam are as follows:
# E = 1e7 and I = 120 in^4
# Assuming a square cross section A = sqrt(12 * I) = 37.95
# Shear modulus (G) = 3.846e6
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 1.0
# mass (m) = 5000 lb / 386 = 12.95

# The theoretical first frequency of this beam is:
# f1 = 1/(2 pi) * sqrt(3EI/(mL^3)) = 5.71 cps

# This implies that the corresponding time period of this beam is 0.175 s.

# The FEM solution for this beam with 10 elements gives
# a time period of 0.175 s with time step of 0.005 s.

# Reference: Strength of Materials by Marin ans Sauer, 2nd Ed.
# Example Problem 11-50, pg. 375

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 60.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
  [./x_inertial]
    type = NodalTranslationalInertia
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 12.95
  [../]
  [./y_inertial]
    type = NodalTranslationalInertia
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 12.95
  [../]
  [./z_inertial]
    type = NodalTranslationalInertia
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 12.95
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 10.0'
    y = '0.0 1e2  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  l_tol = 1e-8
  l_max_its = 50
  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  start_time = 0.0
  dt = 0.005
  end_time = 1.5
  timestep_tolerance = 1e-6
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e7
    poissons_ratio = 0.30005200208
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 37.95
    Ay = 0.0
    Az = 0.0
    Iy = 120.0
    Iz = 120.0
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '60.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '60.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '60.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '60.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
[]

modules/combined/test/tests/contact_verification/patch_tests/single_pnt_2d/single_point_2d_sm.i

[Mesh]
  file = single_point_2d.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./appl_disp]
    type = PiecewiseLinear
    x = '0 0.001  0.101'
    y = '0 0.0   -0.10'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
  [../]
[]

[AuxKernels]
  [./incslip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./incslip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = appl_disp
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = -0.002001
  [../]
[]

[Materials]
  [./bottom]
    type = Elastic
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e9
    formulation = NonlinearPlaneStrain
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    formulation = NonlinearPlaneStrain
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./disp_x]
    type = NodalVariableValue
    nodeid = 5
    variable = disp_x
  [../]
  [./disp_y]
    type = NodalVariableValue
    nodeid = 5
    variable = disp_y
  [../]
  [./inc_slip_x]
    type = NodalVariableValue
    nodeid = 5
    variable = inc_slip_x
  [../]
  [./inc_slip_y]
    type = NodalVariableValue
    nodeid = 5
    variable = inc_slip_y
  [../]
  [./accum_slip_x]
    type = NodalVariableValue
    nodeid = 5
    variable = accum_slip_x
  [../]
  [./accum_slip_y]
    type = NodalVariableValue
    nodeid = 5
    variable = accum_slip_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu    superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 200
  dt = 0.001
  end_time = 0.001
  num_steps = 10000
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-8
  dtmin = 0.001
  l_tol = 1e-3
[]

[Outputs]
  file_base = single_point_2d_out_glued_kin
  exodus = true
  print_linear_residuals = true
  perf_graph = true
  csv = true
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    disp_y = disp_y
    disp_x = disp_x
    model = glued
    system = constraint
    formulation = kinematic
    penalty = 1e12
    normalize_penalty = true
    tangential_tolerance = 1e-3
  [../]
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test7.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
    xmin = 0
    xmax = 4
    ymin = 0
    ymax = 4
  []

  [./SubdomainBoundingBox1]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '1 1 1'
  [../]
  [./SubdomainBoundingBox2]
    type = SubdomainBoundingBoxGenerator
    input = SubdomainBoundingBox1
    block_id = 1
    bottom_left = '2 2 0'
    top_right = '3 3 1'
  [../]
  [./ed0]
    type = BlockDeletionGenerator
    block_id = 1
    input = SubdomainBoundingBox2
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/poro_elasticity/vol_expansion_poroperm.i

# Apply an increasing porepressure, with zero mechanical forces,
# and observe the corresponding volumetric expansion and porosity increase.
# Check that permeability is calculated correctly from porosity.
#
# P = t
# With the Biot coefficient being 1, the effective stresses should be
# stress_xx = stress_yy = stress_zz = t
# With bulk modulus = 1 then should have
# vol_strain = strain_xx + strain_yy + strain_zz = t.
#
# With the biot coefficient being 1, the porosity (phi) # at time t is:
# phi = 1 - (1 - phi0) / exp(vol_strain)
# where phi0 is the porosity at t = 0 and P = 0.
#
# The permeability (k) is
# k = k_anisotropic * f * d^2 * phi^n / (1-phi)^m

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = 0
  PorousFlowDictator = dictator
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./p]
  [../]
[]

[BCs]
  [./p]
    type = FunctionDirichletBC
    boundary = 'bottom top'
    variable = p
    function = t
  [../]
  [./xmin]
    type = DirichletBC
    boundary = left
    variable = disp_x
    value = 0
  [../]
  [./ymin]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0
  [../]
  [./zmin]
    type = DirichletBC
    boundary = back
    variable = disp_z
    value = 0
  [../]
[]

[Kernels]
  [./p_does_not_really_diffuse]
    type = Diffusion
    variable = p
  [../]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 1
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 1
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 1
    variable = disp_z
    component = 2
  [../]
[]

[AuxVariables]
  [./poro]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_y]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./poro]
    type = PorousFlowPropertyAux
    property = porosity
    variable = poro
  [../]
  [./perm_x]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_x
    row = 0
    column = 0
  [../]
  [./perm_y]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_y
    row = 1
    column = 1
  [../]
  [./perm_z]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_z
    row = 2
    column = 2
  [../]
[]

[Postprocessors]
  [./poro]
    type = PointValue
    variable = poro
    point = '0 0 0'
  [../]
  [./perm_x]
    type = PointValue
    variable = perm_x
    point = '0 0 0'
  [../]
  [./perm_y]
    type = PointValue
    variable = perm_y
    point = '0 0 0'
  [../]
  [./perm_z]
    type = PointValue
    variable = perm_z
    point = '0 0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'p'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 1
    shear_modulus = 1
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = p
    capillary_pressure = pc
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.1
    solid_bulk = 1
    biot_coefficient = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityKozenyCarman
    k_anisotropy = '1 0 0  0 2 0  0 0 0.1'
    poroperm_function = kozeny_carman_fd2
    f = 0.1
    d = 5
    m = 2
    n = 7
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol'
    petsc_options_value = 'gmres bjacobi 1E-10 1E-10 10 1E-15 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  dt = 0.1
  end_time = 1
[]

[Outputs]
  file_base = vol_expansion_poroperm
  csv = true
  execute_on = 'timestep_end'
[]

modules/tensor_mechanics/test/tests/interaction_integral/interaction_integral_3d.i

#This tests the Interaction-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the Interaction-Integrals using options
#to treat it as 3d.

[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack3d.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]


[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = interaction_integral_3d_out
  exodus = true
  csv = true
[]

test/tests/functions/generic_function_material/generic_function_material_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./diff_func]
    type = ParsedFunction
    value = 1/t
  [../]
[]

[Kernels]
  [./diff]
    type = GenericDiffusion
    variable = u
    property = diffusion
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./conv]
    type = Convection
    variable = u
    velocity = '1 0 0'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./gfm]
    type = GenericFunctionMaterial
    block = 0
    prop_names = diffusion
    prop_values = diff_func
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/max_procs_per_app/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_3/brick3_template1_sm.i

[Mesh]
  file = brick3_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_x
  [../]
  [./disp_x33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_x
  [../]
  [./disp_y28]
    type = NodalVariableValue
    nodeid = 27
    variable = disp_y
  [../]
  [./disp_y33]
    type = NodalVariableValue
    nodeid = 32
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x28 disp_y28 disp_x33 disp_y33 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    order = SECOND
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/richards/test/tests/jacobian_1/jn_fu_22.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true
# piecewiselinearflux = true, with fully_upwind = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
  fully_upwind = true
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 1
    [../]
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = 'left right'
    pressures = '-0.9 0.9'
    bare_fluxes = '1E8 2E8'  # can not make too high as finite difference constant state bums out due to precision loss
    use_mobility = true
    use_relperm = true
    variable = pressure
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn_fu_22
  exodus = false
[]

modules/porous_flow/test/tests/jacobian/fflux13.i

# 2phase (PP), 3components (that exist in both phases), constant viscosity, constant insitu permeability
# density with constant bulk, Corey relative perm, nonzero gravity, unsaturated with vanGenuchten
# using harmonic-mean mobility
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp1]
  [../]
  [./massfrac_ph1_sp0]
  [../]
  [./massfrac_ph1_sp1]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph0_sp1]
    type = RandomIC
    variable = massfrac_ph0_sp1
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 0.4
  [../]
  [./massfrac_ph1_sp1]
    type = RandomIC
    variable = massfrac_ph1_sp1
    min = 0
    max = 0.4
  [../]
[]


[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = ppwater
    gravity = '-1 -0.1 0'
    full_upwind_threshold = 0
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = ppgas
    gravity = '-1 -0.1 0'
    full_upwind_threshold = 0
    fallback_scheme = harmonic
  [../]
  [./flux2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 2
    variable = massfrac_ph0_sp0
    gravity = '-1 -0.1 0'
    full_upwind_threshold = 0
    fallback_scheme = harmonic
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas massfrac_ph0_sp0'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/materials/stateful_prop/stateful_prop_test_older.i

[Mesh]
  dim = 3
  file = cube.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./prop1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = MatDiffusionTest
    variable = u
    prop_name = thermal_conductivity
    prop_state = 'older'                  # Use the "Older" value to compute conductivity
  [../]

  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./prop1_output_init]
    type = MaterialRealAux
    variable = prop1
    property = thermal_conductivity
    execute_on = initial
  [../]

  [./prop1_output]
    type = MaterialRealAux
    variable = prop1
    property = thermal_conductivity
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0.0
  [../]

  [./top]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1.0
  [../]
[]

[Materials]
  [./stateful]
    type = StatefulTest
    prop_names = thermal_conductivity
    prop_values = 1.0
  [../]
[]

[Postprocessors]
  [./integral]
    type = ElementAverageValue
    variable = prop1
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  l_max_its = 10

  start_time = 0.0
  num_steps = 5
  dt = .1
[]

[Outputs]
  file_base = out_older
  exodus = true
  csv = true
[]

modules/richards/test/tests/gravity_head_1/gh_fu_09.i

# unsaturated = false
# gravity = false
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGnone
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh_fu_09
  exodus = true
[]

modules/combined/test/tests/axisymmetric_2d3d_solution_function/3dy_sm.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  file = 3dy.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hoop_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydrostatic_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = 2d_out.e
    system_variables = 'disp_x disp_y temp'
  [../]
[]

[Functions]
  [./soln_func_temp]
    type = Axisymmetric2D3DSolutionFunction
    solution = soln
    from_variables = 'temp'
  [../]
  [./soln_func_disp_x]
    type = Axisymmetric2D3DSolutionFunction
    solution = soln
    from_variables = 'disp_x disp_y'
    component = 0
  [../]
  [./soln_func_disp_y]
    type = Axisymmetric2D3DSolutionFunction
    solution = soln
    from_variables = 'disp_x disp_y'
    component = 1
  [../]
  [./soln_func_disp_z]
    type = Axisymmetric2D3DSolutionFunction
    solution = soln
    from_variables = 'disp_x disp_y'
    component = 2
  [../]
[]

[SolidMechanics]
  [./solid]
    temp = temp
  [../]
[]

[AuxKernels]
  [./t_soln_aux]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = soln_func_temp
  [../]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./vonmises_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
  [../]
  [./hoop_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = hoop_stress
    quantity = hoop
    execute_on = timestep_end
  [../]
  [./hydrostatic_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = hydrostatic_stress
    quantity = hydrostatic
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./x_soln_bc]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '1 2'
    function = soln_func_disp_x
  [../]
  [./y_soln_bc]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = '1 2'
    function = soln_func_disp_y
  [../]
  [./z_soln_bc]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = '1 2'
    function = soln_func_disp_z
  [../]
[]

[Materials]
  [./solid_mechanics1]
    type = Elastic
    block = '1 2'
    temp = temp
    youngs_modulus = 193.05e9
    poissons_ratio = 0.3
    thermal_expansion = 13e-6
    stress_free_temperature = 295.00
  [../]

  [./density]
    type = Density
    block = '1'
    density = 8000.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-ksp_snes_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = ' 201                hypre    boomeramg      4'
  line_search = 'none'
  l_max_its = 25
  nl_max_its = 20
  nl_rel_tol = 1e-10
  l_tol = 1e-2

  start_time = 0.0
  dt = 1
  end_time = 1
  dtmin = 1
[]

[Outputs]
  file_base = 3dy_out
  exodus = true
  [./console]
    type = Console
    max_rows = 25
  [../]
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform8.i

# Plastic deformation, compression with hardening
# With Lame lambda=0 and Lame mu=1, applying the following
# deformation to the zmax surface of a unit cube:
# disp_z = -t
# should yield trial stress:
# stress_zz = -2*t
# The compressive strength varies as a cubic between 1 (at intnl=0)
# and 2 (at intnl=1).  The equation to solve is
# 2 - Ezzzz * ga = -2 * (ga - 1/2)^3 + (3/2) (ga - 1/2) + 3/2
# where the left-hand side comes from p = p_trial + ga * Ezzzz
# and the right-hand side is the cubic compressive strength
# The solution is ga = 0.355416 ( = intnl[1]), and the cubic
# is 1.289168 ( = -p) at that point
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 0
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = -t
  [../]
[]

[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 20
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 2
    value_residual = 1
    internal_0 = -1
    internal_limit = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 5
    smoothing_tol = 5
    yield_function_tol = 1E-10
  [../]
[]

[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform8
  csv = true
[]

modules/tensor_mechanics/test/tests/ad_2D_geometries/2D-RZ_finiteStrain_resid.i

# This tests the save_in_disp residual aux-variables for
# ComputeAxisymmetricRZFiniteStrain, which is generated through the use of the
# TensorMechanics MasterAction. The GeneratedMesh is 1x1, rotated via axisym to
# create a cylinder of height 1, radius 1.
#
# PostProcessor force_z plots the force on the top surface of the cylinder.
#
# Displacement of 0.1 is applied to top of cylinder while other surfaces are
# constrained. Plotting force_z vs stress_z will show a slope of 3.14159 (pi),
# consistent with formula for normal stress:
#
# Stress = force / area
#
# where area is A = pi * r^2 for a circle.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    save_in = 'force_r force_z'
    use_automatic_differentiation = true
  [../]
[]

[AuxVariables]
  [./stress_r]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_r]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./force_r]
    order = FIRST
    family = LAGRANGE
  [../]
  [./force_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./stress_r]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_r
    execute_on = timestep_end
  [../]
  [./strain_r]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 0
    variable = strain_r
    execute_on = timestep_end
  [../]
  [./stress_z]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_z
    execute_on = timestep_end
  [../]
  [./strain_z]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
    variable = strain_z
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./_elastic_strain]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[BCs]
  [./no_disp_r_left]
    type = ADDirichletBC
    variable = disp_r
    boundary = left
    value = 0.0
  [../]
  [./no_disp_r_right]
    type = ADDirichletBC
    variable = disp_r
    boundary = right
    value = 0.0
  [../]
  [./no_disp_z_bottom]
    type = ADDirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]
  [./top]
    type = ADFunctionDirichletBC
    variable = disp_z
    boundary = top
    function = 't'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '  201               hypre    boomeramg      10'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

  start_time = 0.0
  end_time = 0.1
  dt = 0.01
[]

[Postprocessors]
  [./strainR]
    type = ElementAverageValue
    variable = strain_r
  [../]
  [./stressR]
    type = ElementAverageValue
    variable = stress_r
  [../]
  [./strainZ]
    type = ElementAverageValue
    variable = strain_z
  [../]
  [./stressZ]
    type = ElementAverageValue
    variable = stress_z
  [../]
  [./force_r]
    type = NodalSum
    variable = force_r
    boundary = top
  [../]
  [./force_z]
    type = NodalSum
    variable = force_z
    boundary = top
  [../]
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto29.i

# CappedDruckerPragerCosserat

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]


[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 2
    internal_limit = 100
  [../]
  [./cs]
    type = TensorMechanicsHardeningCubic
    value_0 = 5
    value_residual = 3
    internal_limit = 100
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningCubic
    value_0 = 10
    value_residual = 1
    internal_limit = 100
  [../]
  [./phi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.8
    value_residual = 0.4
    internal_limit = 50
  [../]
  [./psi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.4
    value_residual = 0
    internal_limit = 10
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    yield_function_tolerance = 1E-11     # irrelevant here
    internal_constraint_tolerance = 1E-9 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 2.1
    poisson = 0.1
    layer_thickness = 1.0
    joint_normal_stiffness = 3.0
    joint_shear_stiffness = 2.5
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6 5 4  5.1 7 2  4 2.1 2'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = dp
  [../]
  [./dp]
    type = CappedDruckerPragerCosseratStressUpdate
    host_youngs_modulus = 2.1
    host_poissons_ratio = 0.1
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-11
    tip_smoother = 0.1
    smoothing_tol = 0.1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/tensile/random_smoothed.i

# Plasticity models:
# Smoothed tensile with strength = 1MPa
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 1234
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1234
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./tot_iters]
    type = ElementIntegralMaterialProperty
    mat_prop = plastic_NR_iterations
    outputs = console
  [../]
  [./raw_f0]
    type = ElementExtremeValue
    variable = f0
    outputs = console
  [../]
  [./iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./f0]
    type = FunctionValuePostprocessor
    function = should_be_zero0_fcn
  [../]
[]

[Functions]
  [./should_be_zero0_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f0'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./tensile]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    tensile_tip_smoother = 1E5
    yield_function_tolerance = 1.0E-1
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 1.3E9'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-7
    plastic_models = 'tensile'
    max_NR_iterations = 20
    min_stepsize = 1E-4
    max_stepsize_for_dumb = 1E-3
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1 1'
    debug_jac_at_intnl = '1 1 1 1'
    debug_stress_change = 1E1
    debug_pm_change = '1E-6 1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random_smoothed
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/phase_field/test/tests/misc/equal_gradient_lagrange.i

#
# This test demonstrates an InterfaceKernel set that can enforce the componentwise
# continuity of the gradient of a variable using the Lagrange multiplier method.
#

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 20
    ny = 10
    ymax = 0.5
  []
  [./box1]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '0.51 1 0'
    input = gen
  [../]
  [./box2]
    type = SubdomainBoundingBoxGenerator
    block_id = 2
    bottom_left = '0.49 0 0'
    top_right = '1 1 0'
    input = box1
  [../]
  [./iface_u]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = 1
    paired_block = 2
    new_boundary = 10
    input = box2
  [../]
[]

[Variables]
  [./u2]
    block = 1
    [./InitialCondition]
      type = FunctionIC
      function = 'r:=sqrt((x-0.4)^2+(y-0.5)^2);if(r<0.05,5,1)'
    [../]
  [../]
  [./v2]
    block = 2
    initial_condition = 0.8
  [../]
  [./lambda]
  [../]
[]

[Kernels]
  [./u2_diff]
    type = Diffusion
    variable = u2
    block = 1
  [../]
  [./u2_dt]
    type = TimeDerivative
    variable = u2
    block = 1
  [../]
  [./v2_diff]
    type = Diffusion
    variable = v2
    block = 2
  [../]
  [./v2_dt]
    type = TimeDerivative
    variable = v2
    block = 2
  [../]
  [./lambda]
    type = NullKernel
    variable = lambda
  [../]
[]

[InterfaceKernels]
  [./iface]
    type = InterfaceDiffusionBoundaryTerm
    boundary = 10
    variable = u2
    neighbor_var = v2
  [../]
  [./lambda]
    type = EqualGradientLagrangeMultiplier
    variable = lambda
    boundary = 10
    element_var = u2
    neighbor_var = v2
    component = 0
  [../]
  [./constraint]
    type = EqualGradientLagrangeInterface
    boundary = 10
    lambda = lambda
    variable = u2
    neighbor_var = v2
    component = 0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[VectorPostprocessors]
  [./uv]
    type = LineValueSampler
    variable = 'u2 v2'
    start_point = '0 0.5 0'
    end_point = '1 0.5 0'
    sort_by = x
    num_points = 100
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pctype -sub_pc_type -sub_pc_factor_shift_type -pc_factor_shift_type'
  petsc_options_value = ' asm    lu          nonzero                    nonzero'

  dt = 0.002
  num_steps = 10
[]

[Outputs]
  exodus = true
  csv = true
  hide = lambda
  print_linear_residuals = false
[]

modules/tensor_mechanics/test/tests/weak_plane_tensile/except1.i

# checking for small deformation
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = x_disp
    boundary = front
    value = 1E-6
  [../]
  [./topy]
    type = DirichletBC
    variable = y_disp
    boundary = front
    value = 1E-6
  [../]
  [./topz]
    type = DirichletBC
    variable = z_disp
    boundary = front
    value = 1E-6
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialRealAux
    property = weak_plane_tensile_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = -1.0
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wpt
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-5
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/tensile/planar5.i

# A single unit element is stretched by 1E-6m in z direction.
# with Lame lambda = 0.6E6 and Lame mu (shear) = 1E6
# stress_zz = 2.6 Pa
# stress_xx = 0.6 Pa
# stress_yy = 0.6 Pa
# tensile_strength is set to 0.5Pa with cubic hardening to 1Pa at intnl=1E-6
#
# The return should be to a plane (but the algorithm
# will try tip-return first), with, according to mathematica
# plastic_multiplier = 6.655327991E-7
# stress_zz = 0.869613817289
# stress_xx = 0.20068032054

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.0E-6*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./hard]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.5
    value_residual = 1
    internal_limit = 1E-6
  [../]
  [./tens]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = hard
    shift = 1E-6
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.6E6 1E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = tens
    debug_fspb = none
    debug_jac_at_stress = '1 2 3 2 -4 -5 3 -5 10'
    debug_jac_at_pm = '0.1 0.2 0.3'
    debug_jac_at_intnl = 1E-6
    debug_stress_change = 1E-6
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar5
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/outputs/intervals/no_final_repeat.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = Exodus
    execute_on = 'final timestep_end'
  [../]
[]

modules/tensor_mechanics/test/tests/drucker_prager/small_deform3_inner_tip.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-1.7E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    smoother = 8
    mc_interpolation_scheme = inner_tip
    yield_function_tolerance = 1E-7
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-13
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3_inner_tip
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/phase_field/test/tests/MultiSmoothCircleIC/latticesmoothcircleIC_normal_test.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 22
  ny = 22
  nz = 22
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 100
  zmin = 0
  zmax = 100
  elem_type = HEX8

[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./c]
     type = LatticeSmoothCircleIC
     variable = c
     invalue = 1.0
     outvalue = 0.0001
     circles_per_side = '3 3 3'
     pos_variation = 10.0
     radius = 10.0
     int_width = 12.0
     radius_variation = 2
     radius_variation_type = normal
  [../]
[]

[Kernels]
active = 'ie_c diff'

  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]

  [./diff]
    type = MatDiffusion
    variable = c
    diffusivity = D_v
  [../]
[]

[BCs]

[]

[Materials]
active = 'Dv'

  [./Dv]
    type = GenericConstantMaterial
    prop_names = D_v
    prop_values = 0.074802
  [../]
[]

[Postprocessors]
  active = 'bubbles'

  [./bubbles]
    type = FeatureFloodCount
    variable = c
    execute_on = 'initial timestep_end'
    flood_entity_type = NODAL
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'




  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 101 ds'

  l_max_its = 20
  l_tol = 1e-4

  nl_max_its = 20
  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-11

  start_time = 0.0
  num_steps =1
  dt = 100.0
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/j_integral/j_integral_2d.i

#This tests the J-Integral evaluation capability.
#This is a 2d plane strain model
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.



[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
[]

[Mesh]
  file = crack2d.e
  displacements = 'disp_x disp_y'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = j_integral_2d_out
  exodus = true
  csv = true
[]

modules/porous_flow/test/tests/dirackernels/theis2.i

# Theis problem: Flow to single sink
# Constant rate injection between 200 and 1000 s.
# Cartesian mesh with logarithmic distribution in x and y.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  bias_x = 1.1
  bias_y = 1.1
  ymax = 100
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
  compute_enthalpy = false
  compute_internal_energy = false
[]

[Variables]
  [./pp]
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = pp
    gravity = '0 0 0'
    fluid_component = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      viscosity = 0.001
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 200
  end_time = 1000
  nl_abs_tol = 1e-10
[]

[Outputs]
  perf_graph = true
  file_base = theis2
  [./csv]
    type = CSV
    execute_on = final
  [../]
[]

[ICs]
  [./PressureIC]
    variable = pp
    type = ConstantIC
    value = 20e6
  [../]
[]

[DiracKernels]
  [./sink]
    type = PorousFlowSquarePulsePointSource
    start_time = 200
    end_time = 1000
    point = '0 0 0'
    mass_flux = -0.04
    variable = pp
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = pp
    value = 20e6
    boundary = right
  [../]
  [./top]
    type = DirichletBC
    variable = pp
    value = 20e6
    boundary = top
  [../]
[]

[VectorPostprocessors]
  [./pressure]
    type = SideValueSampler
    variable = pp
    sort_by = x
    execute_on = timestep_end
    boundary = bottom
  [../]
[]

modules/phase_field/test/tests/grain_growth/explicit.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmin = 0
  xmax = 400
  ymin = 0
  ymax = 400
  zmin = 0
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 1
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
  implicit = false
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalCircleGrainIC]
      radius = 300
      x = 400
      y = 0
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./gr1area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = explicit-euler
  solve_type = NEWTON

  # petsc_options_iname = '-pc_type'
  # petsc_options_value = 'bjacobi'
  #
  l_tol = 1.0e-6
  nl_rel_tol = 1.0e-10
  num_steps = 61
  dt = 0.08
[]

[Outputs]
  execute_on = 'initial timestep_end final'
  csv = true
  interval = 20
  exodus = true
[]

test/tests/time_integrators/actually_explicit_euler_verification/ee-2d-quadratic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD9
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = ((x*x)+(y*y))-(4*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  l_tol = 1e-13
  start_time = 0.0
  num_steps = 20
  dt = 0.00005

  [./TimeIntegrator]
    type = ActuallyExplicitEuler
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

test/tests/restart/kernel_restartable/kernel_restartable_custom_name_second.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = RestartDiffusion
    variable = u
    coef = 1
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 1e-2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Problem]
  restart_file_base = kernel_restartable_custom_name_restart_cp/LATEST
  name = "SomeCrazyName" # Testing this
[]

modules/porous_flow/test/tests/dirackernels/bh_except03.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
    at_nodes = true # Needed to force expected error
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/tensor_mechanics/test/tests/jacobian/cwp02.i

# Capped weak-plane plasticity
# checking jacobian for tensile failure
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 2
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 1
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 0 0  0 0 2'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 1
    smoothing_tol = 2
    yield_function_tol = 1E-10
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/porous_flow/test/tests/dirackernels/theis1.i

# Theis problem: Flow to single sink
# SinglePhase
# Cartesian mesh with logarithmic distribution in x and y.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  bias_x = 1.1
  bias_y = 1.1
  ymax = 100
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
  compute_enthalpy = false
  compute_internal_energy = false
[]

[Variables]
  [./pp]
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = pp
    gravity = '0 0 0'
    fluid_component = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      viscosity = 0.001
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-14 0 0 0 1E-14 0 0 0 1E-14'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  [../]
[]

[Postprocessors]
  [./porepressure]
    type = PointValue
    point = '0 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./total_mass]
    type = PorousFlowFluidMass
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 200
  end_time = 1E3
  nl_abs_tol = 1e-10
[]

[Outputs]
  perf_graph = true
  file_base = theis1
  [./csv]
    type = CSV
    execute_on = final
  [../]
[]

[ICs]
  [./PressureIC]
    variable = pp
    type = ConstantIC
    value = 20e6
  [../]
[]

[DiracKernels]
  [./sink]
    type = PorousFlowSquarePulsePointSource
    end_time = 1000
    point = '0 0 0'
    mass_flux = -0.04
    variable = pp
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = pp
    value = 20e6
    boundary = right
  [../]
  [./top]
    type = DirichletBC
    variable = pp
    value = 20e6
    boundary = top
  [../]
[]

[VectorPostprocessors]
  [./pressure]
    type = SideValueSampler
    variable = pp
    sort_by = x
    execute_on = timestep_end
    boundary = bottom
  [../]
[]

modules/porous_flow/test/tests/jacobian/denergy04.i

# 2phase, 1 component, with solid displacements, time derivative of energy-density, THM porosity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pgas]
  [../]
  [./pwater]
  [../]
  [./temp]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
  [./pgas]
    type = RandomIC
    variable = pgas
    max = 1.0
    min = 0.0
  [../]
  [./pwater]
    type = RandomIC
    variable = pwater
    max = 0.0
    min = -1.0
  [../]
  [./temp]
    type = RandomIC
    variable = temp
    max = 1.0
    min = 0.0
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./dummy_pgas]
    type = Diffusion
    variable = pgas
  [../]
  [./dummy_pwater]
    type = Diffusion
    variable = pwater
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas temp pwater disp_x disp_y disp_z'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      cv = 1.3
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      cv = 0.7
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    thermal = true
    ensure_positive = false
    porosity_zero = 0.7
    thermal_expansion_coeff = 0.7
    biot_coefficient = 0.9
    solid_bulk = 1
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.1
    density = 0.5
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = pgas
    capillary_pressure = pc
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/tensor_mechanics/test/tests/jacobian/cto09.i

# checking jacobian for 3-plane linear plasticity using SimpleTester.
#
# This is like the test multi/three_surface14.i
# Plasticity models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# trial stress_yy = 0.15 and stress_zz = 1.5
#
# trial stress_yy = 2.1 and stress_zz = 3.0
#
# Then all three will be active, but there is linear-dependence.
# SimpleTester1 will turn off, since it is closest,
# and the algorithm will return to stress_zz=1, stress_yy=2, but
# then SimpleTester1 will be positive, so it will be turned back
# on, and then SimpleTester0 or SimpleTester2 will be turned off
# (a random choice will be made).
# If SimpleTester2 is turned
# off then algorithm returns to stress_zz=1=stress_yy, but then
# SimpleTester2 violates Kuhn-Tucker (f<0 and pm>0), so the algorithm
# will restart, and return to stress_zz=1=stress_yy, with internal0=2
# and internal1=1.1
# If SimpleTester0 is turned off then the algorithm will return to
# stress_zz=2, stress_yy=1, where f0>0.  Once again, a random choice
# of turning off SimpleTester1 or SimpleTester2 can be made.  Hence,
# oscillations can occur.  If too many oscillations occur then the algorithm
# will fail




[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 2.1 0  0 0 3.0'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    tangent_operator = linear
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/materials/output/output_multiple_files.i

[Mesh]
  type = FileMesh
  file = rectangle.e
  dim = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.5
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Materials]
  [./block_1]
    type = OutputTestMaterial
    block = 1
    output_properties = 'real_property'
    outputs = exodus1
    variable = u
  [../]
  [./block_2]
    type = OutputTestMaterial
    block = 2
    output_properties = 'vector_property'
    outputs = exodus2
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./exodus1]
    type = Exodus
    hide = u
  [../]
  [./exodus2]
    type = Exodus
    hide = u
  [../]
[]

modules/xfem/test/tests/solid_mechanics_basic/sm/penny_crack_cfp.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
  xmin = -1.1
  xmax = 1.1
  ymin = -1.1
  ymax = 1.1
  zmin = -1.1
  zmax = 1.1
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[UserObjects]
  [./circle_cut_uo]
    type = CircleCutUserObject
    cut_data = '0  0 0
                0 -0.5 0
                -0.5 0 0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
   order = CONSTANT
    family = MONOMIAL
  [../]
[]

[DomainIntegral]
  integrals = 'Jintegral'
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  crack_direction_method = CurvedCrackFront
  radius_inner = '0.3'
  radius_outer = '0.6'
  poissons_ratio = 0.3
  youngs_modulus = 207000
  block = 0
  crack_front_points_provider = circle_cut_uo
  number_points_from_provider = 10
  convert_J_to_K = true
  closed_loop = true
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
    block = 0
  [../]
[]

[Functions]
  [./top_trac_z]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_z]
    type = FunctionNeumannBC
    boundary = front
    variable = disp_z
    function = top_trac_z
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = back
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = back
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = back
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 207000
    compute_JIntegral = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/phase_field/test/tests/actions/Nonconserved_highorder.i

#
# Test the parsed function free enery Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  xmax = 40
  ymax = 40
  elem_type = QUAD
  second_order = true
[]

[Modules]
  [./PhaseField]
    [./Nonconserved]
      [./eta]
        family = LAGRANGE
        order = SECOND
        free_energy = F
        kappa = 2.0
        mobility = 1.0
        variable_mobility = false
      [../]
    [../]
  [../]
[]

[ICs]
  [./InitialCondition]
    type = SmoothCircleIC
    variable = eta
    x1 = 20.0
    y1 = 20.0
    radius = 6.0
    invalue = 0.9
    outvalue = 0.1
    int_width = 3.0
  [../]
[]

[Materials]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta'
    function = '2 * eta^2 * (1-eta)^2 - 0.2*eta'
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  num_steps = 10
  dt = 1.0
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/ad_thermal_expansion_function/mean.i

# This test checks the thermal expansion calculated via a mean thermal expansion coefficient.
# The coefficient is selected so as to result in a 1e-4 strain in the x-axis, and to cross over
# from positive to negative strain.

[Mesh]
  [./gen]
    type = GeneratedMeshGenerator
    dim = 3
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
    use_automatic_differentiation = true
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    function = '1 + t'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ADComputeLinearElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ADComputeMeanThermalExpansionFunctionEigenstrain
    thermal_expansion_function = cte_func_mean
    thermal_expansion_function_reference_temperature = 1.2
    stress_free_temperature = 1.5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'T T_stress_free T_ref end_strain'
    vals = '2 1.5           1.2   1e-4'
    value = 'end_strain / (T - T_stress_free - end_strain * (T_stress_free - T_ref))'
  [../]
[]

[Postprocessors]
  [./disp_x_max]
    type = SideAverageValue
    variable = disp_x
    boundary = right
  [../]
  [./temp_avg]
    type = ElementAverageValue
    variable = temp
  [../]
[]

[Executioner]
  type = Transient

  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test3qnstt.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3qtt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.09
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.09
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_abs_tol = 1e-7
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test3qnstt_out
  exodus = true
[]

test/tests/bcs/periodic/periodic_bc_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  nz = 0
  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./x]
      variable = u
      primary = 3
      secondary = 1
      translation = '40 0 0'
    [../]

    [./y]
      variable = u
      primary = 0
      secondary = 2
      translation = '0 40 0'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 20
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out
  exodus = true
[]

modules/functional_expansion_tools/test/tests/standard_use/multiapp_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./empty]
  [../]
[]

[AuxVariables]
  [./s]
    order = FIRST
    family = LAGRANGE
  [../]
  [./m_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./null_kernel]
    type = NullKernel
    variable = empty
  [../]
[]

[AuxKernels]
  [./reconstruct_m_in]
    type = FunctionSeriesToAux
    function = FX_Basis_Value_Sub
    variable = m_in
  [../]
  [./calculate_s]
    type = ParsedAux
    variable = s
    args = m_in
    function = '2*exp(-m_in/0.8)'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Sub
    variable = s
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

modules/tensor_mechanics/test/tests/ad_isotropic_elasticity_tensor/2D-axisymmetric_rz_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD8
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    use_automatic_differentiation = true
  [../]
[]

[AuxVariables]
  [./stress_theta]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_theta]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_theta
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./elasticity_tensor]
    #Material constants selected to match isotropic lambda and shear modulus case
    type = ComputeElasticityTensor
    C_ijkl = '1022726 113636 113636 1022726 454545'
    fill_method = axisymmetric_rz
  [../]
  [./elastic_stress]
    type = ADComputeLinearElasticStress
  [../]
[]

[BCs]
# pin particle along symmetry planes
  [./no_disp_r]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0.0
  [../]

  [./no_disp_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_r]
    type = ADPressure
    variable = disp_r
    boundary = right
    component = 0
    constant = 200000
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '  201               hypre    boomeramg      10'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

  start_time = 0.0
  end_time = 1
  num_steps = 1000

  dtmax = 5e6
  dtmin = 1

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    optimal_iterations = 6
    iteration_window = 0
    linear_iteration_ratio = 100
  [../]

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  file_base = 2D-axisymmetric_rz_test_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform11.i

# use an initial stress, then apply a shear deformation and tensile stretch to observe all hardening.
# Here p_trial=12, q_trial=2*Sqrt(20)
# MOOSE yields:
# q_returned = 1.696
# p_returned = 0.100
# intnl_shear = 1.81
# intnl_tens = 0.886
# These give, at the returned point
# cohesion = 1.84
# tanphi = 0.513
# tanpsi = 0.058
# tensile = 0.412
# This means that
# f_shear = -0.0895
# f_tensile = -0.312
# Note that these are within smoothing_tol (=1) of each other
# Hence, smoothing must be used:
# ismoother = 0.0895
# (which gives the yield function value = 0)
# smoother = 0.328
# This latter gives dg/dq = 0.671, dg/dp = 0.368
# for the flow directions.  Finally ga = 2.70, and
# the returned point satisfies the normality conditions.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    eigenstrain_names = ini_stress
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = '0.5*t'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 't'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '0.5*t'
  [../]
[]


[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 2
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 0
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 1E8
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 4.0
    shear_modulus = 4.0
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 2 0 0 4 2 4 6'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-3
    perfect_guess = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform11
  [./csv]
    type = CSV
  [../]
[]

test/tests/mesh/adapt_weight/adapt_weight_test.i

[Mesh]
  dim = 2
  file = square.e
  uniform_refine = 3
[]

[Variables]
  active = 'u v'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'udiff uconv uie vdiff vconv vie'

  [./udiff]
    type = Diffusion
    variable = u
  [../]

  [./uconv]
    type = Convection
    variable = u
    velocity = '10 1 0'
  [../]

  [./uie]
    type = TimeDerivative
    variable = u
  [../]

  [./vdiff]
    type = Diffusion
    variable = v
  [../]

  [./vconv]
    type = Convection
    variable = v
    velocity = '-10 1 0'
  [../]

  [./vie]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  active = 'uleft uright vleft vright'

  [./uleft]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./uright]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]

  [./vleft]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 1
  [../]

  [./vright]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 2
  dt = .1

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  [./Adaptivity]
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
    weight_names = 'u'
    weight_values = '1.0'
  [../]
[]

[Outputs]
  file_base = out
  exodus = true
[]

test/tests/kernels/coupled_time_derivative/coupled_time_derivative_test.i

###########################################################
# This is a simple test of the CoupledTimeDerivative kernel.
# The expected solution for the variable v is
# v(x) = 1/2 * (x^2 + x)
###########################################################

[Mesh]
  type = GeneratedMesh
  nx = 5
  ny = 5
  dim = 2
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./time_u]
    type = TimeDerivative
    variable = u
  [../]
  [./fn_u]
    type = BodyForce
    variable = u
    function = 1
  [../]
  [./time_v]
    type = CoupledTimeDerivative
    variable = v
    v = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = v
    boundary = 'left'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = v
    boundary = 'right'
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'NEWTON'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/mortar_tm/2d/ad_frictionless_sec/finite.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
    use_automatic_differentiation = true
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/porous_flow/examples/restart/gas_injection_new_mesh.i

# Using the results from the equilibrium run to provide the initial condition for
# porepressure, we now inject a gas phase into the brine-saturated reservoir. In this
# example, the mesh is not identical to the mesh used in gravityeq.i. Rather, it is
# generated so that it is more refined near the injection boundary and at the top of
# the model, as that is where the gas plume will be present.
#
# To use the hydrostatic pressure calculated using the gravity equilibrium run as the initial
# condition for the pressure, a SolutionUserObject is used, along with a SolutionFunction to
# interpolate the pressure from the gravity equilibrium run to the initial condition for liqiud
# porepressure in this example.
#
# Even though the gravity equilibrium is established using a 2D mesh, in this example,
# we use a mesh shifted 0.1 m to the right and rotate it about the Y axis to make a 2D radial
# model.
#
# Methane injection takes place over the surface of the hole created by rotating the mesh,
# and hence the injection area is 2 pi r h. We can calculate this using an AreaPostprocessor,
# and then use this in a ParsedFunction to calculate the injection rate so that 10 kg/s of
# methane is injected.
#
# Note: as this example uses the results from a previous simulation, gravityeq.i MUST be
# run before running this input file.

[Mesh]
  type = GeneratedMesh
  dim = 2
  ny = 25
  nx = 50
  ymax = 100
  xmin = 0.1
  xmax = 5000
  bias_x = 1.05
  bias_y = 0.95
[]

[Problem]
  coord_type = RZ
  rz_coord_axis = Y
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 -9.81 0'
  temperature_unit = Celsius
[]

[Variables]
  [./pp_liq]
  [../]
  [./sat_gas]
    initial_condition = 0
  [../]
[]

[ICs]
  [./ppliq_ic]
    type = FunctionIC
    variable = pp_liq
    function = ppliq_ic
  [../]
[]

[AuxVariables]
  [./temperature]
    initial_condition = 50
  [../]
  [./xnacl]
    initial_condition = 0.1
  [../]
  [./brine_density]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./methane_density]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
  [./pp_gas]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./sat_liq]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pp_liq
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    variable = pp_liq
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = sat_gas
    fluid_component = 1
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    variable = sat_gas
    fluid_component = 1
  [../]
[]

[AuxKernels]
  [./brine_density]
    type = PorousFlowPropertyAux
    property = density
    variable = brine_density
    execute_on = 'initial timestep_end'
  [../]
  [./methane_density]
    type = PorousFlowPropertyAux
    property = density
    variable = methane_density
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./pp_gas]
    type = PorousFlowPropertyAux
    property = pressure
    phase = 1
    variable = pp_gas
    execute_on = 'initial timestep_end'
  [../]
  [./sat_liq]
    type = PorousFlowPropertyAux
    property = saturation
    variable = sat_liq
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./gas_injection]
    type = PorousFlowSink
    boundary = left
    variable = sat_gas
    flux_function = injection_rate
    fluid_phase = 1
  [../]
  [./brine_out]
    type = PorousFlowPiecewiseLinearSink
    boundary = right
    variable = pp_liq
    multipliers = '0 1e9'
    pt_vals = '0 1e9'
    fluid_phase = 0
    flux_function = 1e-6
    use_mobility = true
    use_relperm = true
    mass_fraction_component = 0
  [../]
[]

[Functions]
  [./injection_rate]
    type = ParsedFunction
    vals = injection_area
    vars = area
    value = '-1/area'
  [../]
  [./ppliq_ic]
    type = SolutionFunction
    solution = soln
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp_liq sat_gas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1e-5
    m = 0.5
    sat_lr = 0.2
    pc_max = 1e7
  [../]
  [./soln]
    type = SolutionUserObject
    mesh = gravityeq_out.e
    system_variables = porepressure
  [../]
[]

[Modules]
  [./FluidProperties]
    [./brine]
      type = BrineFluidProperties
    [../]
    [./methane]
      type = MethaneFluidProperties
    [../]
    [./methane_tab]
      type = TabulatedFluidProperties
      fp = methane
      save_file = false
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./ps]
    type = PorousFlow2PhasePS
    phase0_porepressure = pp_liq
    phase1_saturation = sat_gas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./brine]
    type = PorousFlowBrine
    compute_enthalpy = false
    compute_internal_energy = false
    xnacl = xnacl
    phase = 0
  [../]
  [./methane]
    type = PorousFlowSingleComponentFluid
    compute_enthalpy = false
    compute_internal_energy = false
    fp = methane_tab
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-13 0 0 0 5e-14 0  0 0 1e-13'
  [../]
  [./relperm_liq]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.2
    sum_s_res = 0.3
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
    s_res = 0.1
    sum_s_res = 0.3
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type'
    petsc_options_value = ' asm      lu           NONZERO'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1e8
  nl_abs_tol = 1e-12
  nl_rel_tol = 1e-06
  nl_max_its = 20
  dtmax = 1e6
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1e1
    growth_factor = 1.5
  [../]
[]

[Postprocessors]
  [./mass_ph0]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./mass_ph1]
    type = PorousFlowFluidMass
    fluid_component = 1
    execute_on = 'initial timestep_end'
  [../]
  [./injection_area]
    type = AreaPostprocessor
    boundary = left
    execute_on = initial
  [../]
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  perf_graph = true
[]

test/tests/postprocessors/num_dofs/UserObjTest.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
[]



[Postprocessors]
  [./num_dofs_nl]
    type = NumDOFs
    system = NL
  [../]
[]

[Outputs]
  csv = true
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

modules/combined/test/tests/nodal_area/nodal_area_Hex20.i

[Mesh]
  file = nodal_area_Hex20.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'displ_x displ_y displ_z'
[]

[Functions]
  [./disp]
    type = PiecewiseLinear
    x = '0     1'
    y = '0  20e-6'
  [../]
[]

[Variables]
  [./displ_x]
  [../]
  [./displ_y]
  [../]
  [./displ_z]
  [../]
[]

[AuxVariables]
  [./react_x]
  [../]
  [./react_y]
  [../]
  [./react_z]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    incremental = true
    save_in = 'react_x react_y react_z'
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx'
  [../]
[]

[BCs]
  [./move_right]
    type = FunctionDirichletBC
    boundary = '1'
    variable = displ_x
    function = disp
  [../]

  [./fixed_x]
    type = DirichletBC
    boundary = '3 4'
    variable = displ_x
    value = 0
  [../]

  [./fixed_y]
    type = DirichletBC
    boundary = 10
    variable = displ_y
    value = 0
  [../]

  [./fixed_z]
    type = DirichletBC
    boundary = 11
    variable = displ_z
    value = 0
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e7
    tangential_tolerance = 1e-5
    system = Constraint
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'
  nl_rel_tol = 1e-9
  l_tol = 1e-4
  l_max_its = 40

  start_time = 0.0
  dt = 1.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./react_x]
    type = NodalSum
    variable = react_x
    boundary = 1
    execute_on = 'initial timestep_end'
  [../]
  [./total_area]
    type = NodalSum
    variable = nodal_area_dummy_name
    boundary = 2
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/functions/solution_function/solution_function_exodus_interp_test.i

[Mesh]
  file = cubesource.e
  # This test uses SolutionUserObject which doesn't work with DistributedMesh.
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
#  [./ne]
#    order = FIRST
#    family = LAGRANGE
#  [../]
  [./en]
    order = CONSTANT
    family = MONOMIAL
  [../]
#  [./ee]
#    order = CONSTANT
#    family = MONOMIAL
#  [../]
[]

[Functions]
  [./sourcen]
    type = SolutionFunction
    solution = cube_soln
  [../]
#  [./sourcee]
#    type = SolutionFunction
#    file_type = exodusII
#    mesh = cubesource.e
#    variable = source_element
#  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./nn]
     type = FunctionAux
     variable = nn
     function = sourcen
  [../]
#  [./ne]
#     type = FunctionAux
#     variable = ne
#     function = sourcee
#  [../]
  [./en]
     type = FunctionAux
     variable = en
     function = sourcen
  [../]
#  [./ee]
#     type = FunctionAux
#     variable = ee
#     function = sourcee
#  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]
[]

[UserObjects]
  [./cube_soln]
    type = SolutionUserObject
    mesh = cubesource.e
    system_variables = source_nodal
  [../]
[]

#[Executioner]
#  type = Steady
#  petsc_options = '-snes'
#  l_max_its = 800
#  nl_rel_tol = 1e-10
#[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 50
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_3/ring3_template1.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring3_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'
  petsc_options = '-mat_superlu_dist_iterrefine -mat_superlu_dist_replacetinypivot'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/porous_flow/test/tests/jacobian/fflux10.i

# 1phase, 3components, constant viscosity, constant insitu permeability
# density with constant bulk, BW relative perm, nonzero gravity, unsaturated with BW
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
  [./massfrac1]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = -0.7+x+y
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 0.3
  [../]
  [./massfrac1]
    type = RandomIC
    variable = massfrac1
    min = 0
    max = 0.4
  [../]
[]

[Kernels]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
    gravity = '-1 -0.1 0'
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = massfrac0
    gravity = '-1 -0.1 0'
  [../]
  [./flux2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 2
    variable = massfrac1
    gravity = '-1 -0.1 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0 massfrac1'
    number_fluid_phases = 1
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureBW
    Sn = 0.05
    Ss = 0.9
    las = 2.2
    C = 1.5
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0 massfrac1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityBW
    Sn = 0.05
    Ss = 0.9
    Kn = 0.02
    Ks = 0.95
    C = 1.5
    phase = 0
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/phase_field/test/tests/PolynomialFreeEnergy/split_order8_test.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 15
  xmin = 0
  xmax = 125
[]

[GlobalParams]
  polynomial_order = 8
[]

[Variables]
  [./c]
  [../]
  [./w]
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 60.0
    invalue = 1.0
    outvalue = 0.1
    int_width = 60.0
    variable = c
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    kappa_name = kappa
    w = w
    f_name = F
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[Materials]
  [./Copper]
    type = PFParamsPolyFreeEnergy
    c = c
    T = 1000 # K
    int_width = 30.0
    length_scale = 1.0e-9
    time_scale = 1.0e-9
    D0 = 3.1e-5 # m^2/s, from Brown1980
    Em = 0.71 # in eV, from Balluffi1978 Table 2
    Ef = 1.28 # in eV, from Balluffi1978 Table 2
    surface_energy = 0.7 # Total guess
  [../]
  [./free_energy]
    type = PolynomialFreeEnergy
    c = c
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  start_time = 0.0
  num_steps = 50
  dt = 15
  petsc_options_iname = -pc_type
  petsc_options_value = lu
[]

[Outputs]
   exodus = true
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_rayleigh_hht_action.i

# Test for damped small strain euler beam vibration in y direction

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 1e4
# Shear modulus (G) = 4e7
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 0.01
# Iy = 1e-4 = Iz
# Length (L)= 4 m
# density (rho) = 1.0
# mass proportional rayleigh damping(eta) = 0.1
# stiffness proportional rayleigh damping(eta) = 0.1
# HHT time integration parameter (alpha) = -0.3
# Corresponding Newmark beta time integration parameters beta = 0.4225 and gamma = 0.8

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 6.4e6
# Therefore, the behaves like a Euler-Bernoulli beam.

# The displacement time history from this analysis matches with that obtained from Abaqus.

# Values from the first few time steps are as follows:
# time  disp_y                vel_y                accel_y
# 0.0   0.0                   0.0                  0.0
# 0.2   0.019898364318588     0.18838688112273     1.1774180070171
# 0.4   0.045577003505278     0.087329917525455   -0.92596052423724
# 0.6   0.063767907208218     0.084330765885995    0.21274543331268
# 0.8   0.073602908614573     0.020029576220975   -0.45506879373455
# 1.0   0.06841704414745     -0.071840076837194   -0.46041813317992

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.2 0.4 10.0'
    y = '0.0 0.01  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  l_tol = 1e-11
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10
  start_time = 0.0
  dt = 0.2
  end_time = 5.0
  timestep_tolerance = 1e-6
[]

[Modules/TensorMechanics/LineElementMaster]
  [./all]
    add_variables = true
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'

    # Geometry parameters
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    y_orientation = '0.0 1.0 0.0'

    # dynamic simulation using consistent mass/inertia matrix
    dynamic_consistent_inertia = true

    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'

    density = 1.0
    beta = 0.4225 # Newmark time integraion parameter
    gamma = 0.8 # Newmark time integraion parameter

    # optional parameters for numerical (alpha) and Rayleigh damping
    alpha = -0.3 # HHT time integration parameter
    eta = 0.1 # Mass proportional Rayleigh damping
    zeta = 0.1 # Stiffness proportional Rayleigh damping
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e4
    poissons_ratio = -0.999875
    shear_coefficient = 1.0
    block = 0
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  file_base = 'dyn_euler_small_rayleigh_hht_out'
  exodus = true
  csv = true
  perf_graph = true
[]

modules/porous_flow/test/tests/jacobian/mass10.i

# 1phase
# vanGenuchten, constant-bulk density, HM porosity, 1component, unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = -1
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pp]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
  [./pp]
    type = RandomIC
    variable = pp
    min = -1
    max = 1
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
    strain_at_nearest_qp = true
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.1
    biot_coefficient = 0.5
    solid_bulk = 1
    strain_at_nearest_qp = true
  [../]
  [./nearest_qp]
    type = PorousFlowNearestQp
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/dirackernels/front_tracking/front_tracking.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./time_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./v_all_around]
    type = DirichletBC
    variable = v
    boundary = 'bottom left right top'
    value = 0
  [../]
[]

[UserObjects]
  [./tdf]
    type = TrackDiracFront
    var = u
    execute_on = timestep_begin
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[DiracKernels]
  [./front_source]
    front_uo = tdf
    variable = v
    type = FrontSource
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cdpc01.i

#Cosserat capped weak plane and capped drucker prager
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 0.4
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    yield_function_tolerance = 1E-11     # irrelevant here
    internal_constraint_tolerance = 1E-9 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 10.0
    poisson = 0.25
    layer_thickness = 10.0
    joint_normal_stiffness = 2.5
    joint_shear_stiffness = 2.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '10 0 0  0 10 0  0 0 10'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = 'dp'
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
  [../]
  [./dp]
    type = CappedDruckerPragerCosseratStressUpdate
    host_youngs_modulus = 10.0
    host_poissons_ratio = 0.25
    base_name = dp
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-11
    tip_smoother = 1
    smoothing_tol = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  end_time = 1
  dt = 1
  type = Transient
[]

modules/combined/test/tests/internal_volume/rz_quad8.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a space considering
#   an embedded volume inside.
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total volume
#   is 7.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = meshes/rz_quad8.e
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e4
  [../]
[]

[Variables]
  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]

  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    incremental = true
    strain = FINITE
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2'
    value = 0.0
  [../]

  [./Pressure]
    [./the_pressure]
      boundary = 3
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 2
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/thermal_expansion_function/instantaneous.i

# This test checks the thermal expansion calculated via a instantaneous thermal expansion coefficient.
# The coefficient is selected so as to result in a 1e-4 strain in the x-axis, and to cross over
# from positive to negative strain.

[Mesh]
  [./gen]
    type = GeneratedMeshGenerator
    dim = 3
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    function = '1 + t'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeInstantaneousThermalExpansionFunctionEigenstrain
    thermal_expansion_function = 4e-4
    stress_free_temperature = 1.5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Postprocessors]
  [./disp_x_max]
    type = SideAverageValue
    variable = disp_x
    boundary = right
  [../]
  [./temp_avg]
    type = ElementAverageValue
    variable = temp
  [../]
[]

[Executioner]
  type = Transient

  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/elastic_thermal_patch/elastic_thermal_patch_sm.i

# Patch Test

# This test is designed to compute constant xx, yy, zz, xy, yz, and zx
#  stress on a set of irregular hexes.  The mesh is composed of one
#  block with seven elements.  The elements form a unit cube with one
#  internal element.  There is a nodeset for each exterior node.

# The cube is displaced by 1e-6 units in x, 2e-6 in y, and 3e-6 in z.
#  The faces are sheared as well (1e-6, 2e-6, and 3e-6 for xy, yz, and
#  zx).  This gives a uniform strain/stress state for all six unique
#  tensor components.

# With Young's modulus at 1e6 and Poisson's ratio at 0, the shear
#  modulus is 5e5 (G=E/2/(1+nu)).  Therefore, for the mechanical strain,
#
#  stress xx = 1e6 * 1e-6 = 1
#  stress yy = 1e6 * 2e-6 = 2
#  stress zz = 1e6 * 3e-6 = 3
#  stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 5e5 * 2e-6 / 2 = 1
#  stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5

# However, we must also consider the thermal strain.
# The temperature moves 100 degrees, and the coefficient of thermal
#  expansion is 1e-8.  Therefore, the thermal strain (and the displacement
#  since this is a unit cube) is 1e-6.

# Therefore, the overall effect is (at time 1, with a 50 degree delta):
#
#  stress xx = 1e6 * (1e-6-0.5e-6) = 0.5
#  stress yy = 1e6 * (2e-6-0.5e-6) = 1.5
#  stress zz = 1e6 * (3e-6-0.5e-6) = 2.5
#  stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 5e5 * 2e-6 / 2 = 1
#  stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5
#
# At time 2:
#
#  stress xx = 1e6 * (1e-6-1e-6) = 0
#  stress yy = 1e6 * (2e-6-1e-6) = 1
#  stress zz = 1e6 * (3e-6-1e-6) = 2
#  stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 5e5 * 2e-6 / 2 = 1
#  stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5

[Mesh]
  file = elastic_thermal_patch_test.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./rampConstant1]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1e-6
  [../]
  [./rampConstant2]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 2e-6
  [../]
  [./rampConstant3]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 3e-6
  [../]
  [./rampConstant4]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 4e-6
  [../]
  [./rampConstant6]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 6e-6
  [../]
  [./tempFunc]
    type = PiecewiseLinear
    x = '0. 2.'
    y = '117.56 217.56'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./node1_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./node1_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = rampConstant2
  [../]
  [./node1_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 1
    function = rampConstant3
  [../]

  [./node2_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = rampConstant1
  [../]
  [./node2_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = rampConstant2
  [../]
  [./node2_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 2
    function = rampConstant6
  [../]

  [./node3_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 3
    function = rampConstant1
  [../]
  [./node3_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./node3_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 3
    function = rampConstant3
  [../]

  [./node4_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./node4_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
  [./node4_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]

  [./node5_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 5
    function = rampConstant1
  [../]
  [./node5_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = rampConstant4
  [../]
  [./node5_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 5
    function = rampConstant3
  [../]

  [./node6_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 6
    function = rampConstant2
  [../]
  [./node6_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 6
    function = rampConstant4
  [../]
  [./node6_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 6
    function = rampConstant6
  [../]

  [./node7_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 7
    function = rampConstant2
  [../]
  [./node7_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 7
    function = rampConstant2
  [../]
  [./node7_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 7
    function = rampConstant3
  [../]

  [./node8_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 8
    function = rampConstant1
  [../]
  [./node8_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 8
    function = rampConstant2
  [../]
  [./node8_z]
    type = DirichletBC
    variable = disp_z
    boundary = 8
    value = 0.0
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = '10 12'
    function = tempFunc
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = '1 2 3 4 5 6 7'

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    bulk_modulus = 0.333333333333333e6
    shear_modulus = 0.5e6

    temp = temp
    thermal_expansion = 1e-8

    increment_calculation = eigen
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = '1 2 3 4 5 6 7'

    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    block = '1 2 3 4 5 6 7'
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-12
  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = elastic_thermal_patch_out
  exodus = true
[]

modules/porous_flow/test/tests/fluidstate/theis_brineco2_nonisothermal.i

# Two phase nonisothermal Theis problem: Flow from single source.
# Constant rate injection 2 kg/s of cold CO2 into warm reservoir
# 1D cylindrical mesh
# Initially, system has only a liquid phase, until enough gas is injected
# to form a gas phase, in which case the system becomes two phase.

[Mesh]
  [./mesh]
    type = GeneratedMeshGenerator
    dim = 1
    nx = 40
    xmin = 0.1
    xmax = 200
    bias_x = 1.05
  [../]
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = Y
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[AuxVariables]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./y0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1]
    type = PorousFlowPropertyAux
    variable = x1
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./y0]
    type = PorousFlowPropertyAux
    variable = y0
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = timestep_end
  [../]
[]

[Variables]
  [./pgas]
    initial_condition = 20e6
  [../]
  [./zi]
    initial_condition = 0
  [../]
  [./xnacl]
    initial_condition = 0.1
  [../]
  [./temperature]
    initial_condition = 70
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pgas
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pgas
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = zi
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = zi
  [../]
  [./mass2]
    type = PorousFlowMassTimeDerivative
    fluid_component = 2
    variable = xnacl
  [../]
  [./flux2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 2
    variable = xnacl
  [../]
  [./energy]
    type = PorousFlowEnergyTimeDerivative
    variable = temperature
  [../]
  [./heatadv]
    type = PorousFlowHeatAdvection
    variable = temperature
  [../]
  [./conduction]
    type = PorousFlowHeatConduction
    variable = temperature
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi xnacl temperature'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = zi
    temperature = temperature
    temperature_unit = Celsius
    xnacl = xnacl
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
  [../]
  [./rockheat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1000
    density = 2500
  [../]
  [./rock_thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '50 0 0  0 50 0  0 0 50'
  [../]
[]

[BCs]
  [./cold_gas]
    type = DirichletBC
    boundary = left
    variable = temperature
    value = 20
  [../]
  [./gas_injecton]
    type = PorousFlowSink
    boundary = left
    variable = zi
    flux_function = -0.159155
  [../]
  [./rightwater]
    type = DirichletBC
    boundary = right
    value = 20e6
    variable = pgas
  [../]
  [./righttemp]
    type = DirichletBC
    boundary = right
    value = 70
    variable = temperature
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1e4
  automatic_scaling = true
  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-5
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    growth_factor = 1.5
  [../]
[]

[Postprocessors]
  [./pgas]
    type = PointValue
    point =  '2 0 0'
    variable = pgas
  [../]
  [./sgas]
    type = PointValue
    point =  '2 0 0'
    variable = saturation_gas
  [../]
  [./zi]
    type = PointValue
    point = '2 0 0'
    variable = zi
  [../]
  [./temperature]
    type = PointValue
    point = '2 0 0'
    variable = temperature
  [../]
  [./massgas]
    type = PorousFlowFluidMass
    fluid_component = 1
  [../]
  [./x1]
    type = PointValue
    point =  '2 0 0'
    variable = x1
  [../]
  [./y0]
    type = PointValue
    point =  '2 0 0'
    variable = y0
  [../]
[]

[Outputs]
  print_linear_residuals = false
  perf_graph = true
  csv = true
[]

test/tests/postprocessors/default_value/real_value_override.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = DefaultPostprocessorDiffusion
    variable = u
    pps_name = 0.5  # Here we supply a real value to use as the Postprocessor
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  dt = 0.1
  num_steps = 10
[]

[Outputs]
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/errors/master_num_parameters_wrong.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_left uniform_right'
    execute_on = 'initial timestep_end'
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value BCs/right/value'
    to_control = 'stochastic'
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

test/tests/userobjects/toggle_mesh_adaptivity/toggle_mesh_adaptivity_gaussian_ic_stop_time.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./gaussian_ic]
    type = FunctionIC
    variable = u
    function = gaussian_2d
  [../]
[]

[Functions]
  [./gaussian_2d]
    type = ParsedFunction
    value = exp(-((x-x0)*(x-x0)+(y-y0)*(y-y0))/2.0/sigma/sigma)
    vars = 'sigma x0 y0'
    vals = '0.05 0.35 0.25'
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.02
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  initial_steps = 1
  initial_marker = marker
  cycles_per_step = 1
  marker = marker
  max_h_level = 2
  stop_time = 0.0
  [./Markers]
    [./marker]
      type = CircleMarker
      point = '0.35 0.25 0'
      radius = 0.2
      inside = refine
      outside = coarsen
    [../]
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    print_mesh_changed_info = true
  [../]
[]

modules/phase_field/test/tests/initial_conditions/PolycrystalVoronoiVoidIC_moregrains.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  nz = 0
  xmax = 250
  ymax = 250
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 12
  grain_num = 25
  var_name_base = gr
  numbub = 15
  bubspac = 22
  radius = 8
  int_width = 10
  invalue = 1
  outvalue = 0.1
[]

[Variables]
  [./c]
  [../]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalVoronoiVoidIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
  [./c_IC]
    variable = c
    type = PolycrystalVoronoiVoidIC
    structure_type = voids
    polycrystal_ic_uo = voronoi
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    int_width = 0
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/catch_release/catch_release.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = catch_release.e
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1 2.00 3 4'
    y = '0 1 1.01 1 0'
    scale_factor = 0.5
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_yy'
  []
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = frictionless
    system = Constraint
  [../]
[]

[BCs]
  [./lateral]
    type = DirichletBC
    variable = disp_x
    boundary = '1 4'
    value = 0.0
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    function = up
  [../]

  [./out]
    type = DirichletBC
    variable = disp_z
    boundary = '1 4'
    value = 0.0
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuffStress]
    type = ComputeFiniteStrainElasticStress
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  #petsc_options_iname = '-pc_type -snes_type -snes_ls -snes_linesearch_type -ksp_gmres_restart'
  #petsc_options_value = 'ilu      ls         basic    basic                    101'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-4
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 20
  dt = 1.0
  end_time = 4.0
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/pressure_pulse/pp_lumped_02.i

# investigating pressure pulse in 1D with 1 phase
# transient

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E3
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = 2E6
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsLumpedMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[Outputs]
  file_base = pp_lumped_02
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

modules/porous_flow/test/tests/mass_conservation/mass04.i

# The sample is a single unit element, with roller BCs on the sides
# and bottom.  A constant displacement is applied to the top: disp_z = -0.01*t.
# There is no fluid flow.
# Fluid mass conservation is checked.
#
# Under these conditions
# porepressure = porepressure(t=0) - (Fluid bulk modulus)*log(1 - 0.01*t)
# stress_xx = (bulk - 2*shear/3)*disp_z/L (remember this is effective stress)
# stress_zz = (bulk + 4*shear/3)*disp_z/L (remember this is effective stress)
# where L is the height of the sample (L=1 in this test)
#
# Parameters:
# Bulk modulus = 2
# Shear modulus = 1.5
# fluid bulk modulus = 0.5
# initial porepressure = 0.1
#
# Desired output:
# zdisp = -0.01*t
# p0 = 0.1 - 0.5*log(1-0.01*t)
# stress_xx = stress_yy = -0.01*t
# stress_zz = -0.04*t
#
# Regarding the "log" - it comes from preserving fluid mass

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
    initial_condition = 0.1
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./basefixed]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  [../]
  [./top_velocity]
    type = FunctionDirichletBC
    variable = disp_z
    function = -0.01*t
    boundary = front
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = porepressure
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0.5 0 0   0 0.5 0   0 0 0.5'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'initial timestep_end'
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    use_displaced_mesh = false
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./fluid_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-8 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 2
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = mass04
  [./csv]
    type = CSV
  [../]
[]

modules/stochastic_tools/examples/batch/transient.i

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Problem]
  kernel_coverage_check = false
  solve = false
[]

[Distributions]
  [uniform]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 9
  []
[]

[Samplers]
  [mc]
    type = MonteCarloSampler
    n_samples = 10
    distributions = 'uniform uniform'
  []
[]

[Executioner]
  type = Transient
  num_steps = 10
[]

[MultiApps]
  [runner]
    type = SamplerFullSolveMultiApp
    sampler = mc
    input_files = 'sub.i'
    execute_on = 'INITIAL TIMESTEP_END'
    mode = batch-restore
  []
[]

[Transfers]
  [runner]
    type = SamplerParameterTransfer
    multi_app = runner
    parameters = 'BCs/left/value BCs/right/value'
    to_control = receiver
  []
  [data]
    type = SamplerPostprocessorTransfer
    multi_app = runner
    vector_postprocessor = storage
    postprocessor = average
  []
[]

[VectorPostprocessors]
  [storage]
    type = StochasticResults
  []
[]

[Postprocessors]
  [total]
    type = MemoryUsage
    execute_on = 'INITIAL TIMESTEP_END'
  []
  [per_proc]
    type = MemoryUsage
    value_type = "average"
    execute_on = 'INITIAL TIMESTEP_END'
  []
  [max_proc]
    type = MemoryUsage
    value_type = "max_process"
    execute_on = 'INITIAL TIMESTEP_END'
  []
[]

[Outputs]
  csv = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/planar_hard5.i

# apply repeated stretches in z direction, and smaller stretches along the y direction, and compression along x direction
# Both return to the plane and edge (lode angle = 30deg, ie 010100) are experienced.
#
# It is checked that the yield functions are less than their tolerance values
# It is checked that the cohesion hardens correctly

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.05E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if((a<1E-5)&(b<1E-5)&(c<1E-5)&(d<1E-5)&(g<1E-5)&(h<1E-5),0,abs(a)+abs(b)+abs(c)+abs(d)+abs(g)+abs(h))'
    vars = 'a b c d g h'
    vals = 'f0 f1 f2 f3 f4 f5'
  [../]
  [./coh_analytic]
    type = ParsedFunction
    value = '20-10*exp(-1E6*intnl)'
    vars = intnl
    vals = internal
  [../]
  [./coh_from_yieldfcns]
    type = ParsedFunction
    value = '(f0+f1-(sxx+syy)*sin(phi))/(-2)/cos(phi)'
    vars = 'f0 f1 sxx syy phi'
    vals = 'f0 f1 s_xx s_yy 0.8726646'
  [../]
  [./should_be_zero_coh]
    type = ParsedFunction
    value = 'if(abs(a-b)<1E-6,0,1E6*abs(a-b))'
    vars = 'a b'
    vals = 'Coh_analytic Coh_moose'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn5]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn0]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn0
  [../]
  [./yield_fcn1]
    type = MaterialStdVectorAux
    index = 1
    property = plastic_yield_function
    variable = yield_fcn1
  [../]
  [./yield_fcn2]
    type = MaterialStdVectorAux
    index = 2
    property = plastic_yield_function
    variable = yield_fcn2
  [../]
  [./yield_fcn3]
    type = MaterialStdVectorAux
    index = 3
    property = plastic_yield_function
    variable = yield_fcn3
  [../]
  [./yield_fcn4]
    type = MaterialStdVectorAux
    index = 4
    property = plastic_yield_function
    variable = yield_fcn4
  [../]
  [./yield_fcn5]
    type = MaterialStdVectorAux
    index = 5
    property = plastic_yield_function
    variable = yield_fcn5
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn2
  [../]
  [./f3]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn3
  [../]
  [./f4]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn4
  [../]
  [./f5]
   type = PointValue
    point = '0 0 0'
    variable = yield_fcn5
  [../]
  [./yfcns_should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
  [./Coh_analytic]
    type = FunctionValuePostprocessor
    function = coh_analytic
  [../]
  [./Coh_moose]
    type = FunctionValuePostprocessor
    function = coh_from_yieldfcns
  [../]
  [./cohesion_difference_should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_coh
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 10
    value_residual = 20
    rate = 1E6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8726646
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 1 #0.8726646 # 50deg
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    use_custom_returnMap = true
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = mc
  [../]
[]


[Executioner]
  end_time = 5
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar_hard5
  exodus = false
  [./csv]
    type = CSV
    hide = 'f0 f1 f2 f3 f4 f5 s_xy s_xz s_yz Coh_analytic Coh_moose'
    execute_on = 'timestep_end'
  [../]
[]

modules/combined/test/tests/grain_texture/EulerAngle2RGBAction.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 12
  xmax = 1000
  ymax = 300
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalBoundingBoxIC]
      x1 = 0
      y1 = 0
      x2 = 500
      y2 = 1000
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./active_bounds_elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./bnds_aux]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    execute_on = 'initial timestep_begin'
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    execute_on = 'initial timestep_begin'
    field_display = VARIABLE_COLORING
  [../]
  [./active_bounds_elemental]
    type = FeatureFloodCountAux
    variable = active_bounds_elemental
    field_display = ACTIVE_BOUNDS
    execute_on = 'initial timestep_begin'
    flood_counter = grain_tracker
  [../]
[]

[Modules]
  [./PhaseField]
    [./EulerAngles2RGB]
      crystal_structure = cubic
      euler_angle_provider = euler_angle_file
      grain_tracker = grain_tracker
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    block = 0
    T = 500 # K
    wGB = 75 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
    time_scale = 1.0e-6
  [../]
[]

[UserObjects]
  [./grain_tracker]
    type = FauxGrainTracker
    connecting_threshold = 0.05
    compute_var_to_feature_map = true
    flood_entity_type = elemental
    execute_on = 'initial timestep_begin'
    outputs = none
  [../]
  [./euler_angle_file]
    type = EulerAngleFileReader
    file_name = test.tex
  [../]
[]

[Postprocessors]
  [./gr0_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr0
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -pc_hypre_boomeramg_strong_threshold'
  petsc_options_value = 'hypre boomeramg 31 0.7'

  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 30
  nl_rel_tol = 1e-9

  start_time = 0.0
  num_steps = 3
  dt = 0.2
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  perf_graph = true
[]

modules/phase_field/examples/rigidbodymotion/AC_CH_Multigrain.i

# Tests the rigid body motion due to applied force of multiple particles.

# ***COPY AND PASTE THESE AS NEEDED***
# 'gr0 gr1 gr2 gr3 gr4 gr5 gr6 gr7 gr8 gr9 gr10 gr11 gr12 gr13 gr14 gr15 gr16 gr17 gr18 gr19'
# (gr0^2+gr1^2+gr2^2+gr3^2+gr4^2+gr5^2+gr6^2+gr7^2+gr8^2+gr9^2+gr10^2+gr11^2+gr12^2+gr13^2+gr14^2+gr15^2+gr16^2+gr17^2+gr18^2+gr19^2)
# (gr0^3+gr1^3+gr2^3+gr3^3+gr4^3+gr5^3+gr6^3+gr7^3+gr8^3+gr9^3+gr10^3+gr11^3+gr12^3+gr13^3+gr14^3+gr15^3+gr16^3+gr17^3+gr18^3+gr19^3)

[GlobalParams]
  op_num = 4
  var_name_base = gr
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  xmin = 0
  xmax = 600
  ymin = 0
  ymax = 600
  elem_type = QUAD4
  uniform_refine = 1
[]

[Variables]
  [./c]
  [../]
  [./w]
  [../]
  [./PolycrystalVariables] # Automatically creates order parameter variables
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  [./force]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./free_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./centroids]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./load_x]
    # Defines the force on the grains in the x-direction
    type = ParsedFunction
    value = 0.005*cos(x*pi/600)
  [../]
  [./load_y]
    # Defines the force on the grains in the y-direction
    type = ConstantFunction
    value = 0.002
  [../]
[]

[Kernels]
  [./RigidBodyMultiKernel]
    # Creates all of the necessary Allen Cahn kernels automatically
    c = c
    f_name = f_loc
    mob_name = L
    kappa_name = kappa_gr
    grain_force = grain_force
    grain_volumes = grain_volumes
    grain_tracker_object = grain_center
  [../]
  # Cahn Hilliard kernels
  [./dt_w]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./CH_wres]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./CH_Parsed]
    type = SplitCHParsed
    variable = c
    f_name = f_loc
    w = w
    kappa_name = kappa_c
    args = 'gr0 gr1 gr2 gr3' # Must be changed as op_num changes. Copy/paste from line 4
  [../]
  [./CH_RBM]
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = 'gr0 gr1 gr2 gr3'
    grain_force = grain_force
    grain_volumes = grain_volumes
    grain_tracker_object = grain_center
  [../]
[]

[AuxKernels]
  [./force_x]
    type = FunctionAux
    variable = force
    function = load_x
  [../]
  [./force_y]
    type = FunctionAux
    variable = force
    function = load_y
  [../]
  [./energy_density]
    type = TotalFreeEnergy
    variable = free_energy
    f_name = f_loc
    kappa_names = kappa_c
    interfacial_vars = c
  [../]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
  [../]
[]

[BCs]
  [./bcs]
    #zero flux BC
    type = NeumannBC
    value = 0
    variable = c
    boundary = '0 1 2 3'
  [../]
[]

[Materials]
  [./constants]
    type = GenericConstantMaterial
    prop_names = 'kappa_gr kappa_c M L'
    prop_values = '250 4000 4.5 60'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = f_loc
    constant_names = 'A B'
    constant_expressions = '450 1.5'
    args = 'c gr0 gr1 gr2 gr3' #Must be changed as op_num changes. Copy/paste from line 4
    function = 'A*c^2*(1-c)^2+B*(c^2+6*(1-c)*(gr0^2+gr1^2+gr2^2+gr3^2)
                -4*(2-c)*(gr0^3+gr1^3+gr2^3+gr3^3)
                +3*(gr0^2+gr1^2+gr2^2+gr3^2)^2)'
                                 #Copy/paste from lines 5-6
    derivative_order = 2
  [../]
  [./force_density]
    type = ExternalForceDensityMaterial
    c = c
    k = 10.0
    force_x = load_x
    force_y = load_y
  [../]
[]

[Postprocessors]
  [./total_energy]
    type = ElementIntegralVariablePostprocessor
    variable = free_energy
    execute_on = 'initial timestep_end'
  [../]
[]

[VectorPostprocessors]
  [./forces]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force]
    type = ComputeExternalGrainForceAndTorque
    grain_data = grain_center
    c = c
    etas = 'gr0 gr1 gr2 gr3'
    force_density = force_density_ext
    execute_on = 'linear nonlinear'
  [../]
[]

[Preconditioning]
  [./coupled]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type
                         -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly
                         ilu          2'
  l_tol = 1e-05
  nl_max_its = 30
  l_max_its = 30
  nl_rel_tol = 1e-07
  nl_abs_tol = 1e-09
  start_time = 0.0
  end_time = 4
  dt = 0.05
[]

[Outputs]
  exodus = true
  perf_graph = true
  [./display]
    type = Console
    max_rows = 12
  [../]
[]

[ICs]
  [./concentration_IC]
    type = SpecifiedSmoothCircleIC
    x_positions = '150 450 150 450'
    y_positions = '150 150 450 450'
    z_positions = '0   0   0   0'
    radii =       '120 120 120 120'
    variable = c
    invalue = 1.0
    outvalue = 0.0
    int_width = 25
  [../]
  [./gr0_IC]
    type = SmoothCircleIC
    variable = gr0
    x1 = 150
    y1 = 150
    radius = 120
    invalue = 1.0
    outvalue = 0.0
    int_width = 25
  [../]
  [./gr1_IC]
    type = SmoothCircleIC
    variable = gr1
    x1 = 450
    y1 = 150
    radius = 120
    invalue = 1.0
    outvalue = 0.0
    int_width = 25
  [../]
  [./gr2_IC]
    type = SmoothCircleIC
    variable = gr2
    x1 = 150
    y1 = 450
    radius = 120
    invalue = 1.0
    outvalue = 0.0
    int_width = 25
  [../]
  [./gr3_IC]
    type = SmoothCircleIC
    variable = gr3
    x1 = 450
    y1 = 450
    radius = 120
    invalue = 1.0
    outvalue = 0.0
    int_width = 25
  [../]
[]

modules/richards/test/tests/jacobian_2/jn08.i

# two phase
# unsaturated = true

# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn08
  exodus = false
[]

test/tests/mesh/adapt/adapt_time_test.i

[Mesh]
  dim = 2
  file = square.e
  uniform_refine = 3
[]

[Variables]
  active = 'u v'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'udiff uconv uie vdiff vconv vie'

  [./udiff]
    type = Diffusion
    variable = u
  [../]

  [./uconv]
    type = Convection
    variable = u
    velocity = '10 1 0'
  [../]

  [./uie]
    type = TimeDerivative
    variable = u
  [../]

  [./vdiff]
    type = Diffusion
    variable = v
  [../]

  [./vconv]
    type = Convection
    variable = v
    velocity = '-10 1 0'
  [../]

  [./vie]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  active = 'uleft uright vleft vright'

  [./uleft]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./uright]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]

  [./vleft]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 1
  [../]

  [./vright]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 7
  dt = 0.1

  [./Adaptivity]
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
    start_time = 0.2
    stop_time = 0.4
  [../]
[]

[Outputs]
  file_base = out_time
  exodus = true
  print_mesh_changed_info = true
[]

modules/tensor_mechanics/test/tests/czm/czm_3DC_3D_base_input.i

[Mesh]
  [./msh]
    type = GeneratedMeshGenerator
  []
  [./subdomain_1]
    type = SubdomainBoundingBoxGenerator
    input = msh
    bottom_left = '0 0 0'
    block_id = 1
    top_right = '0.5 1 1'
  []
  [./subdomain_2]
    type = SubdomainBoundingBoxGenerator
    input = subdomain_1
    bottom_left = '0.5 0 0'
    block_id = 2
    top_right = '1 1 1'
  []
  [./breakmesh]
    input = subdomain_2
    type = BreakMeshByBlockGenerator
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_yz stress_xz stress_xy'
  [../]
[]

[Modules/TensorMechanics/CohesiveZoneMaster]
  [./czm1]
    boundary = 'interface'
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = left
    value = 0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = left
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = right
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = right
  [../]
  [./right_z]
    type = FunctionDirichletBC
    variable = disp_z
    preset = false
    boundary = right
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = '1 2'
    fill_method = symmetric_isotropic
    C_ijkl = '0.3 0.5e8'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = '1 2'
  [../]
  [./czm_3dc]
    type = SalehaniIrani3DCTraction
    boundary = 'interface'
    normal_gap_at_maximum_normal_traction = 1
    tangential_gap_at_maximum_shear_traction = 0.5
    maximum_normal_traction = 100
    maximum_shear_traction = 70
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
  solve_type = NEWTON
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-6
  nl_max_its = 5
  l_tol = 1e-10
  l_max_its = 50
  start_time = 0.0
  dt = 0.2
  end_time = 5
  dtmin = 0.2
  line_search = none
[]

[Outputs]
  [./out]
    type = Exodus
  [../]
[]

[Postprocessors]
  [./sxx]
    type = SideAverageValue
    variable = stress_xx
    execute_on = 'INITIAL TIMESTEP_END'
    boundary = 'interface'
  [../]
  [./syy]
    type = SideAverageValue
    variable = stress_yy
    execute_on = 'INITIAL TIMESTEP_END'
    boundary = 'interface'
  [../]
  [./szz]
    type = SideAverageValue
    variable = stress_zz
    execute_on = 'INITIAL TIMESTEP_END'
    boundary = 'interface'
  [../]
  [./syz]
    type = SideAverageValue
    variable = stress_yz
    execute_on = 'INITIAL TIMESTEP_END'
    boundary = 'interface'
  [../]
  [./sxz]
    type = SideAverageValue
    variable = stress_xz
    execute_on = 'INITIAL TIMESTEP_END'
    boundary = 'interface'
  [../]
  [./sxy]
    type = SideAverageValue
    variable = stress_xy
    execute_on = 'INITIAL TIMESTEP_END'
    boundary = 'interface'
  [../]
  [./disp_x]
    type = SideAverageValue
    variable = disp_x
    execute_on = 'INITIAL TIMESTEP_END'
    boundary = 'right'
  [../]
  [./disp_y]
    type = SideAverageValue
    variable = disp_y
    execute_on = 'INITIAL TIMESTEP_END'
    boundary = 'right'
  [../]
  [./disp_z]
    type = SideAverageValue
    variable = disp_z
    execute_on = 'INITIAL TIMESTEP_END'
    boundary = 'right'
  [../]
[]

test/tests/multiapps/positions_from_file/dt_from_multi_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

 [Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/mass_vol_exp01.i

# Tests the PorousFlowMassVolumetricExpansion kernel
# Fluid with constant bulk modulus, van-Genuchten capillary, constant porosity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = 0
  PorousFlowDictator = dictator
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./disp_y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./disp_z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
  [./p]
    type = RandomIC
    min = -1
    max = 1
    variable = porepressure
  [../]
[]

[BCs]
  # necessary otherwise volumetric strain rate will be zero
  [./disp_x]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./disp_y]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'left right'
  [../]
  [./disp_z]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'left right'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./poro]
    type = PorousFlowMassVolumetricExpansion
    fluid_component = 0
    variable = porepressure
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1E20
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '2 3'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jacobian2
  exodus = false
[]

modules/richards/test/tests/dirac/bh_fu_04.i

# unsaturated
# production
# fullyupwind
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  sat_UO = Saturation
  seff_UO = Seff1VG
  SUPG_UO = SUPGstandard
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1 1E1 1E2 1E3'
    x = '0 1E-1 1 1E1 1E2 1E3'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = -1E6
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = 1
    fully_upwind = true
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 0
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]

[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-12 0 0  0 1E-12 0  0 0 1E-12'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1E3
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  file_base = bh_fu_04
  exodus = false
  execute_on = timestep_end
  csv = true
[]

test/tests/postprocessors/nodal_extreme_value/nodal_extreme_pps_test.i

[Mesh]
  type = FileMesh
  file = trapezoid.e
  uniform_refine = 1
  # This test will not work in parallel with DistributedMesh enabled
  # due to a bug in PeriodicBCs.
  parallel_type = replicated
[]

[Functions]
  [./tr_x]
    type = ParsedFunction
    value = -x*cos(pi/3)
  [../]
  [./tr_y]
    type = ParsedFunction
    value = x*sin(pi/3)
  [../]
  [./itr_x]
    type = ParsedFunction
    value = -x/cos(pi/3)
  [../]
  [./itr_y]
    type = ParsedFunction
    value = 0
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./forcing]
    type = GaussContForcing
    variable = u
    x_center = 2
    y_center = -1
    x_spread = 0.25
    y_spread = 0.5
  [../]
  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  # active = ' '
  [./Periodic]
    [./x]
      primary = 1
      secondary = 4
      transform_func = 'tr_x tr_y'
      inv_transform_func = 'itr_x itr_y'
    [../]
  [../]
[]

[Postprocessors]
  [./max_nodal_pps]
    type = NodalExtremeValue
    variable = u
  [../]
  [./max_node_id]
    type = NodalProxyMaxValue
    variable = u
  [../]
  [./min_nodal_pps]
    type = NodalExtremeValue
    variable = u
    value_type = min
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  num_steps = 6
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

tutorials/darcy_thermo_mech/step10_multiapps/problems/step10_micro.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  ymax = 0.1
  xmax = 0.1
  uniform_refine = 0
[]

[Adaptivity]
  max_h_level = 4
  initial_steps = 6
  initial_marker = error_marker
  cycles_per_step = 2
  marker = error_marker
  [Indicators]
    [phi_jump]
      type = GradientJumpIndicator
      variable = phi
    []
  []
  [Markers]
    [error_marker]
      type = ErrorFractionMarker
      indicator = phi_jump
      refine = 0.8
      coarsen = 0.1
    []
  []
[]

[Variables]
  [temperature]
    initial_condition = 300
  []
[]

[AuxVariables]
  [phi]
  []
  [por_var]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[AuxKernels]
  [corrosion]
    type = RandomCorrosion
    variable = phi
    reference_temperature = 300
    temperature = temperature_in
    execute_on = 'INITIAL TIMESTEP_END'
  []
  [por_var]
    type = MaterialRealAux
    variable = por_var
    property = porosity
    execute_on = 'INITIAL TIMESTEP_END'
  []
[]

[Kernels]
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
[]

[BCs]
  [left]
    type = PostprocessorDirichletBC
    variable = temperature
    boundary = left
    postprocessor = temperature_in
  []
  [right]
    type = NeumannBC
    variable = temperature
    boundary = right
    value = 100 # prescribed flux
  []
[]

[Materials]
  [column]
    type = PackedColumn
    temperature = temperature
    radius = 1 # mm
    phase = phi
  []
[]

[Postprocessors]
  [temperature_in]
    type = Receiver
    default = 301
  []
  [k_eff]
    type = ThermalConductivity
    variable = temperature
    T_hot = temperature_in
    flux = 100
    dx = 0.1
    boundary = right
    length_scale = 1
    k0 = 12.05
    execute_on = 'INITIAL TIMESTEP_END'
  []
  [por_var]
    type = ElementAverageValue
    variable = por_var
    execute_on = 'INITIAL TIMESTEP_END'
  []
  [t_right]
    type = SideAverageValue
    boundary = right
    variable = temperature
    execute_on = 'INITIAL TIMESTEP_END'
  []
[]

[Executioner]
  type = Transient
  end_time = 1000
  dt = 1
  steady_state_tolerance = 1e-9
  steady_state_detection = true
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  automatic_scaling = true
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
[]

[ICs]
  [close_pack]
    radius = 0.01 # meter
    outvalue = 0  # water
    variable = phi
    invalue = 1   # steel
    type = ClosePackIC
  []
[]

modules/phase_field/test/tests/GBAnisotropy/testwidth1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 2
  nz = 0
  xmin = -500
  xmax = 1000
  ymin = 0
  ymax = 100
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 3
  var_name_base = gr
  length_scale = 1.0e-9
  time_scale = 1.0e-9
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[Functions]
  [./ic_func_eta1]
    type = ParsedFunction
    value = '0.5*(1.0-tanh((x)*sqrt(m/kappa/2.0)))'
    vars = 'm kappa'
    vals = '0.26514 331.414'
  [../]
  [./ic_func_eta2]
    type = ParsedFunction
    value = '0.5*(1.0+tanh((x)*sqrt(m/kappa/2.0)))*0.5*(1.0-tanh((x-500)*sqrt(m/kappa/2.0)))'
    vars = 'm kappa'
    vals = '0.26514 331.414'
  [../]
  [./ic_func_eta3]
    type = ParsedFunction
    value = '0.5*(1.0+tanh((x-500)*sqrt(m/kappa/2.0)))'
    vars = 'm kappa'
    vals = '0.26514 331.414'
  [../]
[]

[ICs]
  [./eta1_ic]
    variable = gr0
    type = FunctionIC
    function = ic_func_eta1
  [../]
  [./eta2_ic]
    variable = gr1
    type = FunctionIC
    function = ic_func_eta2
  [../]
  [./eta3_ic]
    variable = gr2
    type = FunctionIC
    function = ic_func_eta3
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
    order = FIRST
    family = LAGRANGE
  [../]
  [./var_indices]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./bnds_aux]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./CuGrGranisotropic]
    type = GBWidthAnisotropy
    kappa = 331.414
    mu = 0.26514
    T = 600 # K

    # molar_volume_value = 7.11e-6 #Units:m^3/mol
    Anisotropic_GB_file_name = anisotropy_energy.txt
    inclination_anisotropy = false # true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 40
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-11

  num_steps = 2

  dt = 10
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/combined_plasticity_temperature/plasticity_temperature_dep_yield_sm.i

#
# This is a test of the piece-wise linear strain hardening model using the
# small strain formulation.  This test exercises the temperature-dependent
# yield stress.
#
# Test procedure:
# 1. The element is pulled to and then beyond the yield stress for a given
# temperature.
# 2. The displacement is then constant while the temperature increases and
# the yield stress decreases.  This results in a lower stress with more
# plastic strain.
# 3. The temperature decreases beyond its original value giving a higher
# yield stress.  The displacement increases, causing increases stress to
# the new yield stress.
# 4. The temperature and yield stress are constant with increasing
# displacement giving a constant stress and more plastic strain.
#
# Plotting total_strain_yy on the x axis and stress_yy on the y axis shows
# the stress history in a clear way.
#
#  s |
#  t |            *****
#  r |           *
#  e |   *****  *
#  s |  *    * *
#  s | *     *
#    |*
#    +------------------
#           total strain
#

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1     2    4    5    6'
    y = '0 0.025 0.05 0.05 0.06 0.085'
  [../]
  [./yield]
    type = PiecewiseLinear
    x = '400 500 600'
    y = '6e3 5e3 4e3'
  [../]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2   3   4'
    y = '500 500 500 600 400'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]
  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]
  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]
[]

[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = top_pull
  [../]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp]
    type = FunctionDirichletBC
    variable = temp
    function = temp
    boundary = left
  [../]
[]

[Materials]
  [./vermont]
    type = SolidModel
    formulation = Nonlinear3D
    block = 0
    youngs_modulus = 2e5
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    constitutive_model = kentucky
  [../]
  [./kentucky]
    type = IsotropicPlasticity
    block = 0
    yield_stress = 1e-6 # Should be ignored
    yield_stress_function = yield
    hardening_constant = 0
    relative_tolerance = 1e-25
    absolute_tolerance = 1e-5
    temp = temp
  [../]
  [./utah]
    type = HeatConductionMaterial
    block = 0
    specific_heat = 1
    thermal_conductivity = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 6
  dt = 0.1
[]

[Outputs]
  exodus = true
  file_base = plasticity_temperature_dep_yield_out
[]

modules/phase_field/examples/grain_growth/grain_growth_2D_graintracker.i

# This simulation predicts GB migration of a 2D copper polycrystal with 100 grains represented with 18 order parameters
# Mesh adaptivity and time step adaptivity are used
# An AuxVariable is used to calculate the grain boundary locations
# Postprocessors are used to record time step and the number of grains

[Mesh]
  # Mesh block.  Meshes can be read in or automatically generated
  type = GeneratedMesh
  dim = 2 # Problem dimension
  nx = 11 # Number of elements in the x-direction
  ny = 11 # Number of elements in the y-direction
  xmin = 0    # minimum x-coordinate of the mesh
  xmax = 1000 # maximum x-coordinate of the mesh
  ymin = 0    # minimum y-coordinate of the mesh
  ymax = 1000 # maximum y-coordinate of the mesh
  elem_type = QUAD4  # Type of elements used in the mesh
  uniform_refine = 3 # Initial uniform refinement of the mesh

  parallel_type = replicated # Periodic BCs
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = 8 # Number of order parameters used
  var_name_base = gr # Base name of grains
[]

[Variables]
  # Variable block, where all variables in the simulation are declared
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    grain_num = 100 # Number of grains
    rand_seed = 10
  [../]
  [./grain_tracker]
    type = GrainTracker
    threshold = 0.2
    connecting_threshold = 0.08
    compute_halo_maps = true # Only necessary for displaying HALOS
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  # Dependent variables
  [./bnds]
    # Variable used to visualize the grain boundaries in the simulation
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ghost_regions]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halos]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  # Kernel block, where the kernels defining the residual equations are set up.
  [./PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  [../]
[]

[AuxKernels]
  # AuxKernel block, defining the equations used to calculate the auxvars
  [./bnds_aux]
    # AuxKernel that calculates the GB term
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
    execute_on = 'initial timestep_end'
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
    execute_on = 'initial timestep_end'
  [../]
  [./ghosted_entities]
    type = FeatureFloodCountAux
    variable = ghost_regions
    flood_counter = grain_tracker
    field_display = GHOSTED_ENTITIES
    execute_on = 'initial timestep_end'
  [../]
  [./halos]
    type = FeatureFloodCountAux
    variable = halos
    flood_counter = grain_tracker
    field_display = HALOS
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  # Boundary Condition block
  [./Periodic]
    [./top_bottom]
      auto_direction = 'x y' # Makes problem periodic in the x and y directions
    [../]
  [../]
[]

[Materials]
  [./CuGrGr]
    # Material properties
    type = GBEvolution
    T = 450 # Constant temperature of the simulation (for mobility calculation)
    wGB = 14 # Width of the diffuse GB
    GBmob0 = 2.5e-6 #m^4(Js) for copper from Schoenfelder1997
    Q = 0.23 #eV for copper from Schoenfelder1997
    GBenergy = 0.708 #J/m^2 from Schoenfelder1997
  [../]
[]

[Postprocessors]
  # Scalar postprocessors
  [./dt]
    # Outputs the current time step
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient # Type of executioner, here it is transient with an adaptive time step
  scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  # Uses newton iteration to solve the problem.
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 101 ds'

  l_max_its = 30 # Max number of linear iterations
  l_tol = 1e-4 # Relative tolerance for linear solves
  nl_max_its = 40 # Max number of nonlinear iterations
  nl_rel_tol = 1e-10 # Absolute tolerance for nonlienar solves

  start_time = 0.0
  end_time = 4000

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 25 # Initial time step.  In this simulation it changes.
    optimal_iterations = 6 # Time step will adapt to maintain this number of nonlinear iterations
  [../]

  [./Adaptivity]
    # Block that turns on mesh adaptivity. Note that mesh will never coarsen beyond initial mesh (before uniform refinement)
    initial_adaptivity = 2 # Number of times mesh is adapted to initial condition
    refine_fraction = 0.7 # Fraction of high error that will be refined
    coarsen_fraction = 0.1 # Fraction of low error that will coarsened
    max_h_level = 4 # Max number of refinements used, starting from initial mesh (before uniform refinement)
  [../]
[]

[Outputs]
  exodus = true # Exodus file will be outputted
  csv = true
  [./console]
    type = Console
    max_rows = 20 # Will print the 20 most recent postprocessor values to the screen
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cwp05.i

# Capped weak-plane plasticity
# checking jacobian for shear failure
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 1
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 1.0
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.1
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 100
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 1  0 0 10  1 10 0'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 0
    smoothing_tol = 2
    yield_function_tol = 1E-10
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/transfers/multiapp_copy_transfer/constant_monomial_from_sub/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = sub.i
    execute_on = initial
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppCopyTransfer
    direction = from_multiapp
    source_variable = aux
    variable = u
    multi_app = sub
  [../]
[]

[Outputs]
  exodus = true
[]

modules/chemical_reactions/test/tests/jacobian/coupled_equilsub2.i

# Test the Jacobian terms for the CoupledBEEquilibriumSub Kernel using
# activity coefficients not equal to unity

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./pressure]
    type = RandomIC
    variable = pressure
    min = 1
    max = 5
  [../]
  [./a]
    type = RandomIC
    variable = a
    max = 1
    min = 0
  [../]
  [./b]
    type = RandomIC
    variable = b
    max = 1
    min = 0
  [../]
[]

[Kernels]
  [./diff]
    type = DarcyFluxPressure
    variable = pressure
  [../]
  [./diff_b]
    type = Diffusion
    variable = b
  [../]
  [./a]
    type = CoupledBEEquilibriumSub
    variable = a
    v = b
    log_k = 2
    weight = 2
    sto_v = 1.5
    sto_u = 2
    gamma_eq = 2
    gamma_u = 2.5
    gamma_v = 1.5
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-4 1e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
[]

[Outputs]
  perf_graph = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

modules/combined/test/tests/mortar_tm/2d/frictionless_first/finite_rr.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite_rr'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
    extra_vector_tags = 'ref'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
  nl_abs_tol = 1e-7
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/misc/test/tests/dynamic_loading/dynamic_obj_registration/dynamic_syntax.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1000
  zmin = 0
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 2
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalCircleGrainIC]
      radius = 333.333
      x = 500
      y = 500
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    block = 0
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./gr1area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  # petsc_options_iname = '-pc_type'
  # petsc_options_value = 'lu'
  type = Transient
  scheme = bdf2

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'
  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 1
  dt = 80.0
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

[Problem]
  register_objects_from = 'PhaseFieldApp'
  library_path = '../../../../../phase_field/lib'
[]

modules/combined/test/tests/sliding_block/sliding/constraint/frictionless_kinematic.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the kinematic method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]

  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./left_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_gmres_restart'
  petsc_options_value = 'asm     lu    20    101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+6
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/navier_stokes/test/tests/bump/bump.i

# Euler flow of an ideal gas over a Gaussian "bump".
#
# The inlet is a stagnation pressure and temperature BC which
# corresponds to subsonic (M=0.5) flow with a static pressure of 1 atm
# and static temperature of 300K.  The outlet consists of a
# weakly-imposed static pressure BC of 1 atm.  The top and bottom
# walls of the channel weakly impose the "no normal flow" BC. The
# problem is initialized with freestream flow throughout the domain.
# Although this initial condition is less physically realistic, it
# helps the problem reach steady state more quickly.
#
# There is a sequence of uniformly-refined, geometry-fitted meshes
# from Yidong Xia available for solving this classical subsonic test
# problem (see the Mesh block below).  A coarse grid is used for the
# actual regression test, but changing one line in the Mesh block is
# sufficient to run this problem with different meshes.  An
# entropy-based error estimate is also provided, and can be used to
# demonstrate convergence of the numerical solution (since the true
# solution should produce zero entropy).  The error should converge at
# second-order in this norm.
[Mesh]
  # Bi-Linear elements
  # file = SmoothBump_quad_ref1_Q1.msh # 84 elems, 65 nodes
  # file = SmoothBump_quad_ref2_Q1.msh # 192 elems, 225 nodes
  # file = SmoothBump_quad_ref3_Q1.msh # 768 elems, 833 nodes
  # file = SmoothBump_quad_ref4_Q1.msh # 3072 elems, 3201 nodes
  # file = SmoothBump_quad_ref5_Q1.msh # 12288 elems, 12545 nodes
  # Bi-Quadratic elements
  # file = SmoothBump_quad_ref0_Q2.msh # 32 elems, 65 nodes
  # file = SmoothBump_quad_ref1_Q2.msh # 84 elems, 225 nodes
  file = SmoothBump_quad_ref2_Q2.msh # 260 elems, 833 nodes
  # file = SmoothBump_quad_ref3_Q2.msh # 900 elems, 3201 nodes
  # file = SmoothBump_quad_ref4_Q2.msh # 3332 elems, 12545 nodes
  # file = SmoothBump_quad_ref5_Q2.msh # 12804 elems, 49665 nodes
[]



[Modules]
  [./FluidProperties]
    [./ideal_gas]
      type = IdealGasFluidProperties
      gamma = 1.4
      molar_mass = 0.02897024320557491
    [../]
  [../]

  [./NavierStokes]
    [./Variables]
      #         'rho rhou rhov   rhoE'
      scaling = '1.  1.    1.    9.869232667160121e-6'
      family = LAGRANGE
      order = FIRST
    [../]

    [./ICs]
      initial_pressure = 101325.
      initial_temperature = 300.
      initial_velocity = '173.594354746921 0 0' # Mach 0.5: = 0.5*sqrt(gamma*R*T)
      fluid_properties = ideal_gas
    [../]

    [./Kernels]
      fluid_properties = ideal_gas
    [../]

    [./BCs]
      [./inlet]
        type = NSWeakStagnationInletBC
        boundary = '1'
        stagnation_pressure = 120192.995549849 # Pa, Mach=0.5 at 1 atm
        stagnation_temperature = 315 # K, Mach=0.5 at 1 atm
        sx = 1.
        sy = 0.
        fluid_properties = ideal_gas
      [../]

      [./solid_walls]
        type = NSNoPenetrationBC
        boundary = '3 4' # 'Lower Wall, Upper Wall'
        fluid_properties = ideal_gas
      [../]

      [./outlet]
        type = NSStaticPressureOutletBC
        boundary = '2' # 'Outflow'
        specified_pressure = 101325 # Pa
        fluid_properties = ideal_gas
      [../]
    [../]
  [../]
[]



[Materials]
  [./fluid]
    type = Air
    block = 0 # 'MeshInterior'
    rho = rho
    rhou = rhou
    rhov = rhov
    rhoE = rhoE
    vel_x = vel_x
    vel_y = vel_y
    temperature = temperature
    enthalpy = enthalpy
    # This value is not used in the Euler equations, but it *is* used
    # by the stabilization parameter computation, which it decreases
    # the amount of artificial viscosity added, so it's best to use a
    # realistic value.
    dynamic_viscosity = 0.0
    fluid_properties = ideal_gas
  [../]
[]



[Postprocessors]
  [./entropy_error]
    type = NSEntropyError
    execute_on = 'initial timestep_end'
    block = 0
    rho_infty = 1.1768292682926829
    p_infty = 101325
    rho = rho
    pressure = pressure
    fluid_properties = ideal_gas
  [../]
[]



[Preconditioning]
  [./SMP_PJFNK]
    type = SMP
    full = true
    solve_type = 'PJFNK'
  [../]
[]



[Executioner]
  type = Transient
  dt = 5.e-5
  dtmin = 1.e-5
  start_time = 0.0
  num_steps = 10
  nl_rel_tol = 1e-9
  nl_max_its = 5
  l_tol = 1e-4
  l_max_its = 100

  # We use trapezoidal quadrature.  This improves stability by
  # mimicking the "group variable" discretization approach.
  [./Quadrature]
    type = TRAP
    order = FIRST
  [../]
[]



[Outputs]
  interval = 1
  exodus = true
[]

modules/tensor_mechanics/test/tests/2D_different_planes/planestrain_xz.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = square_xz_plane.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./plane_strain]
    block = 1
    strain = SMALL
    out_of_plane_direction = y
    planar_formulation = PLANE_STRAIN
    eigenstrain_names = 'eigenstrain'
    generate_output = 'stress_xx stress_xz stress_yy stress_zz strain_xx strain_xz strain_yy strain_zz'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 3
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_stress]
    type = ComputeLinearElasticStress
    block = 1
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Postprocessors]
  [./react_y]
    type = MaterialTensorIntegral
    use_displaced_mesh = false
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-10

# controls for nonlinear iterations
  nl_max_its = 10
  nl_rel_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  file_base = planestrain_xz_small_out
  exodus = true
[]

modules/combined/test/tests/elastic_patch/elastic_patch_rspherical.i

#
# Patch test for 1D spherical elements
#
# The 1D mesh is pinned at x=0.  The displacement at the outer node is set to
#   3e-3*X where X is the x-coordinate of that node.  That gives a strain of
#   3e-3 for the x, y, and z directions.
#
# Young's modulus is 1e6, and Poisson's ratio is 0.25.  This gives:
#
# Stress xx, yy, zz = E/(1+nu)/(1-2nu)*strain*((1-nu) + nu + nu) = 6000
#

[GlobalParams]
  displacements = 'disp_x'
  temperature = temp
[]

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]
  file = elastic_patch_rspherical.e
[]

[Variables]
  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules/TensorMechanics/Master/All]
  strain = SMALL
  incremental = true
  add_variables = true
  generate_output = 'stress_xx stress_yy stress_zz'
[]

[Kernels]
  [./heat]
    type = TimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '1 2'
    function = '3e-3*x'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]

  [./density]
    type = Density
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_projection_transfer/tosub_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 9
  ymin = 0
  ymax = 9
  nx = 9
  ny = 9
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [x]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[Functions]
  [x_func]
    type = ParsedFunction
    value = x
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[AuxKernels]
  [x_func_aux]
    type = FunctionAux
    variable = x
    function = x_func
    execute_on = initial
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'NEWTON'
[]

[Outputs]
  exodus = true
[]

[Debug]
#  show_actions = true
[]

[MultiApps]
  [sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '1 1 0 5 5 0'
    input_files = tosub_sub.i
  []
[]

[Transfers]
  [tosub]
    type = MultiAppProjectionTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u_nodal
  []
  [elemental_tosub]
    type = MultiAppProjectionTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u_elemental
  []
  [elemental_to_sub_elemental]
    type = MultiAppProjectionTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = x
    variable = x_elemental
  []
  [elemental_to_sub_nodal]
    type = MultiAppProjectionTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = x
    variable = x_nodal
  []
[]

test/tests/transfers/multiapp_postprocessor_transfer/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = CoefDiffusion
    variable = u
    coef = 0.01
  []
  [td]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Postprocessors]
  [average]
    type = ElementAverageValue
    variable = u
  []
[]

[Executioner]
  type = Transient
  num_steps = 5

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [pp_sub]
    app_type = MooseTestApp
    positions = '0.5 0.5 0 0.7 0.7 0'
    execute_on = timestep_end
    type = TransientMultiApp
    input_files = sub.i
  []
[]

[Transfers]
  [pp_transfer]
    type = MultiAppPostprocessorTransfer
    direction = to_multiapp
    multi_app = pp_sub
    from_postprocessor = average
    to_postprocessor = from_master
  []
[]

python/peacock/tests/common/oversample.i

###########################################################
# This is a simple test with a time-dependent problem
# demonstrating the use of a "Transient" Executioner.
#
# @Requirement F1.10
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./dt]
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'

  # Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_transient
  exodus = true
  [./refine_2]
    type = Exodus
    file_base = oversample_2
    refinements = 2
  [../]
[]

test/tests/misc/displaced_mesh_coupling/nonad.i

[GlobalParams]
  displacements = 'u'
[]

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./u]
    type = Diffusion
    use_displaced_mesh = true
    variable = u
  [../]
  [./v]
    type = Diffusion
    use_displaced_mesh = false
    variable = v
  [../]
[]

[BCs]
  [./no_x]
    type = NeumannBC
    variable = u
    boundary = left
    value = 1.0e-3
    use_displaced_mesh = true
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./lright]
    type = DirichletBC
    variable = v
    boundary = right
    value = 1
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update24_cosserat.i

# Cosserat version of Capped Mohr Columb (using StressUpdate)
# Tensile + shear failure, starting from a non-symmetric stress state

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E2
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E8
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 4E1
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1E3
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 2.0E3
    joint_shear_stiffness = 1.0E3
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '100.1 0.1 -0.2  0.1 0.9 0  -0.2 0 1.1'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombCosseratStressUpdate
    host_youngs_modulus = 1E3
    host_poissons_ratio = 0.25
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/heat_convection/heat_convection_function.i

[Mesh]    # Mesh Start
  file = patch_3d.e
#
[]    # Mesh END

[Functions]
  [./t_infinity]
    type = ParsedFunction
    value = '300'
  [../]
  [./htc]
    type = ParsedFunction
    value = 10.0
  [../]
[]

[Variables]  # Variables Start
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 294.26
  [../]
[]    # Variables END


[Kernels]  # Kernels Start
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]    # Kernels END


[BCs]    # Boundary Conditions Start
# Heat transfer coefficient on outer parallelpiped radius and ends
  [./convective_clad_surface]    # Convective Start
    type = ConvectiveFluxFunction  # Convective flux, e.g. q'' = h*(Tw - Tf)
    boundary = 12
    variable = temp
    coefficient = 5.7                   # convective heat transfer coefficient (w/m^2-K)[50 BTU/hr-ft^2-F]
    coefficient_function = htc
    T_infinity = t_infinity
  [../]                                  # Convective End

  [./fixed]
    type = DirichletBC
    variable = temp
    boundary = 10
    value = 100
  [../]
[]    # BCs END

[Materials]    # Materials Start
  [./thermal]
    type = HeatConductionMaterial
    block = '1 2 3 4 5 6 7'
    specific_heat = 826.4
    thermal_conductivity = 57
  [../]

  [./density]
    type = Density
    block = '1 2 3 4 5 6 7'
    density = 2405.28
  [../]
[]      # Materials END

[Executioner]    # Executioner Start
   type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


   petsc_options = '-snes_ksp_ew '
   petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type'
   petsc_options_value = '70 hypre boomeramg'
   l_max_its = 60
   nl_rel_tol = 1e-8
   nl_abs_tol = 1e-10
   l_tol = 1e-5

   start_time = 0.0
   dt = 1
   num_steps = 1
[]      # Executioner END

[Outputs]    # Output Start
  # Output Start
  exodus = true
[]      # Output END
#      # Input file END

modules/tensor_mechanics/test/tests/jacobian/mc_update33.i

# MC update version, with only MohrCoulomb, cohesion=40, friction angle = 35deg, psi = 5deg, smoothing_tol = 0.5
# Compressive strength = 1MPa
# Lame lambda = 1E3.  Lame mu = 1.3E3

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 4E1
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 0.5
    shear_modulus = 1.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-10 -12 14  -12 -5 -20  14 -20 -8'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/richards/test/tests/jacobian_2/jnQ2P_sink.i

# quick two phase with sink

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]


[UserObjects]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = Q2PRelPermPowerGas
    simm = 0.1
    n = 3
  [../]
[]

[Variables]
  [./pp]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 1
    [../]
  [../]
  [./sat]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]

[BCs]
  [./gas_flux]
    type = Q2PPiecewiseLinearSink
    boundary = 'left right'
    pressures = '-0.9 0.9'
    bare_fluxes = '1E8 2E8'  # can not make too high as finite-difference constant state bums out due to precision loss
    use_mobility = true
    use_relperm = true
    fluid_density = DensityGas
    fluid_relperm = RelPermGas
    variable = pp
    other_var = sat
    var_is_porepressure = true
    fluid_viscosity = 1
  [../]
  [./water_flux]
    type = Q2PPiecewiseLinearSink
    boundary = 'left right'
    pressures = '-0.9 0.9'
    bare_fluxes = '1E8 2E8'  # can not make too high as finite-difference constant state bums out due to precision loss
    use_mobility = true
    use_relperm = true
    fluid_density = DensityWater
    fluid_relperm = RelPermWater
    variable = sat
    other_var = pp
    var_is_porepressure = false
    fluid_viscosity = 1
  [../]
[]

[Q2P]
  porepressure = pp
  saturation = sat
  water_density = DensityWater
  water_relperm = RelPermWater
  water_viscosity = 1
  gas_density = DensityGas
  gas_relperm = RelPermGas
  gas_viscosity = 1
  diffusivity = 0
[]

[Materials]
  [./rock]
    type = Q2PMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1.1 0 0  0 2.2 0  0 0 3.3'
    gravity = '1 2 3'
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jnQ2P_sink
  exodus = false
[]

modules/tensor_mechanics/test/tests/multi/three_surface09.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 2.0E-6m in y direction and 0.0E-6 in z direction.
# trial stress_yy = 2.0 and stress_zz = 0.0
#
# Then SimpleTester1 and SimpleTester2 should activate and the algorithm will return to
# the corner stress_yy=1.0, stress_zz=0.5
# However, this will mean that internal2<0, so SimpleTester2 will be deactivated
# and the algorithm will return to stress_yy=1
# internal1 should be 1.0, and internal2 should be 0

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2.0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface09
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/functional_expansion_tools/examples/3D_volumetric_cylindrical_subapp_mesh_refine/main.i

# Derived from the example '3D_volumetric_cylindrical' with the following differences:
#
#   1) The model mesh is refined in the MasterApp by 1
#   2) Mesh adaptivity is enabled for the SubApp
#   3) Output from the SubApp is enabled so that the mesh changes can be visualized
[Mesh]
  type = FileMesh
  file = cyl-tet.e
  uniform_refine = 1
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = HeatConduction
    variable = m
  [../]
  [./time_diff_m]
    type = HeatConductionTimeDerivative
    variable = m
  [../]
  [./s_in] # Add in the contribution from the SubApp
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[Materials]
  [./Unobtanium]
    type = GenericConstantMaterial
    prop_names =  'thermal_conductivity specific_heat density'
    prop_values = '1.0                  1.0           1.0' # W/(cm K), J/(g K), g/cm^3
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'top bottom outside'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = CylindricalDuo
    orders = '5   3' # Axial first, then (r, t) FX
    physical_bounds = '-2.5 2.5   0 0 1' # z_min z_max   x_center y_center radius
    z = Legendre # Axial in z
    disc = Zernike # (r, t) default to unit disc in x-y plane
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = sub.i
    output_sub_cycles = true
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

modules/tensor_mechanics/test/tests/initial_stress/gravity.i

# Apply an initial stress that should be
# exactly that caused by gravity, and then
# do a transient step to check that nothing
# happens

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -10
  zmax = 0
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./weight]
    type = BodyForce
    variable = disp_z
    value = -0.5 # this is density*gravity
  [../]
[]


[BCs]
  # back = zmin
  # front = zmax
  # bottom = ymin
  # top = ymax
  # left = xmin
  # right = xmax
  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left right'
    value = 0
  [../]
  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom top'
    value = 0
  [../]
  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 'back'
    value = 0
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]


[Functions]
  [./weight]
    type = ParsedFunction
    value = '0.5*z' # initial stress that should result from the weight force
  [../]
  [./kxx]
    type = ParsedFunction
    value = '0.4*z' # some arbitrary xx and yy stress that should not affect the result
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./strain_from_initial_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = 'kxx 0 0  0 kxx 0  0 0 weight'
    eigenstrain_name = ini_stress
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]


[Executioner]
  end_time = 1.0
  dt = 1.0
  solve_type = NEWTON
  type = Transient

  nl_abs_tol = 1E-8
  nl_rel_tol = 1E-12
  l_tol = 1E-3
  l_max_its = 200
  nl_max_its = 400

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]



[Outputs]
  file_base = gravity
  exodus = true
[]

modules/combined/test/tests/internal_volume/hex20_sm.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a space considering
#   an embedded volume inside.
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total volume
#   is 7.
#

[Mesh]
  file = meshes/hex20.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./step]
    type = PiecewiseLinear
    x = '0. 1. 2. 3.'
    y = '0. 0. 1e-2 0.'
    scale_factor = 0.5
  [../]
[]

[Variables]
  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]

  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]

  [./disp_z]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./prescribed_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 100
    function = step
  [../]
[]

[Materials]
  [./stiffStuff]
    type = LinearIsotropicMaterial
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    t_ref = 400.
  [../]

  [./stiffStuff2]
    type = LinearIsotropicMaterial
    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    t_ref = 400.
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 3.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 100
    execute_on = 'initial timestep_end'
  [../]

  [./dispZ]
    type = ElementAverageValue
    block = '1 2'
    variable = disp_z
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_4/ring4_mu_0_2_pen.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring4_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = ring4_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = ring4_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/solid_mechanics/test/tests/reaction_prescribed_disp/reaction.i

[Mesh]
  file = 2d_square.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./resid_x]
  [../]
  [./resid_y]
  [../]
  [./diag_stiff_x]
  [../]
  [./diag_stiff_y]
  [../]
[]

[Functions]
  [./horizontal_movement]
    type = ParsedFunction
    value = t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = resid_x
    save_in_disp_y = resid_y
    diag_save_in_disp_x = diag_stiff_x
    diag_save_in_disp_y = diag_stiff_y
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./1]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.0
    youngs_modulus = 1e9
  [../]
[]

[Postprocessors]
  [./react_x]
    type = NodalSum
    variable = resid_x
    boundary = 4
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'
  line_search = 'none'

  nl_rel_tol = 1e-12
  l_max_its = 100
  nl_max_its = 10

  dt = 0.01
  end_time = 0.1
[]

[Outputs]
  file_base = reaction_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

modules/chemical_reactions/test/tests/jacobian/2species_equilibrium.i

# Tests the Jacobian when equilibrium secondary species are present

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./pressure]
    type = RandomIC
    variable = pressure
    max = 5
    min = 1
  [../]
  [./a]
    type = RandomIC
    variable = a
    max = 1
    min = 0
  [../]
  [./b]
    type = RandomIC
    variable = b
    max = 1
    min = 0
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = 'a b'
    reactions = '2a = pa2     2
                 a + b = pab 2'
    secondary_species = 'pa2 pab'
    pressure = pressure
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./a_conv]
    type = PrimaryConvection
    variable = a
    p = pressure
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./b_diff]
    type = PrimaryDiffusion
    variable = b
  [../]
  [./b_conv]
    type = PrimaryConvection
    variable = b
    p = pressure
  [../]
  [./pressure]
    type = DarcyFluxPressure
    variable = pressure
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-4 1e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
[]

[Outputs]
  perf_graph = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/frictionless_kinematic_dirac.i

# This is a dirac (contact formulation) version of frictionless_kinematic.i
[Mesh]
  file = blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e7
    poissons_ratio = 0.3
  [../]
  [./right]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]


[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.1
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = frictionless
    penalty = 1e+6
    system = diracKernel
  [../]
[]

modules/combined/test/tests/solid_mechanics/Rayleigh_damping/Newmark_time_integration/sm/Rayleigh_Newmark_sm.i

# Test for rayleigh damping implemented using Newmark time integration

# The test is for an 1-D bar element of unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# zeta and eta correspond to the stiffness and mass proportional
# rayleigh damping beta and gamma are Newmark time integration
# parameters The equation of motion in terms of matrices is:
#
# M*accel + eta*M*vel + zeta*K*vel + K*disp = P*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + eta*density*vel + zeta*d/dt(Div stress) + Div stress = P
#
# The first two terms on the left are evaluated using the Inertial
# force kernel The next two terms on the left involving zeta ise
# evaluated using the StressDivergence Kernel The residual due to
# Pressure is evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure
# becomes constant.
[GlobalParams]
  volumetric_locking_correction = false
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
    eta=0.1
  [../]
  [./stiffness_x]
    type = StressDivergence
    variable = disp_x
    component = 0
    zeta = 0.1
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
    eta=0.1
  [../]
  [./stiffness_y]
    type = StressDivergence
    variable = disp_y
    component = 1
    zeta = 0.1
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
    eta = 0.1
  [../]
  [./stiffness_z]
    type = StressDivergence
    variable = disp_z
    component = 2
    zeta = 0.1
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
     type = MaterialTensorAux
     variable = stress_yy
     tensor = stress
     index = 1
  [../]
  [./strain_yy]
     type = MaterialTensorAux
     variable = strain_yy
     tensor = total_strain
     index = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
    boundary = bottom
    function = pressure
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    factor = 1
    [../]
  [../]
[]

[Materials]

  [./constant]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    youngs_modulus = 210e+09
    poissons_ratio = 0
    thermal_expansion = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 2
  dtmax = 0.1
  dtmin = 0.1
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
  [./vel_ic]
    type = PiecewiseLinear
    x = '0.0 0.5 1.0'
    y = '0.1 0.1 0.1'
    scale_factor = 1
  [../]
[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
   [./disp]
     type = NodalMaxValue
     variable = disp_y
     boundary = bottom
   [../]
   [./vel]
     type = NodalMaxValue
     variable = vel_y
     boundary = bottom
   [../]
   [./accel]
     type = NodalMaxValue
     variable = accel_y
     boundary = bottom
   [../]
   [./stress_yy]
      type = ElementAverageValue
      variable = stress_yy
   [../]
   [./strain_yy]
      type = ElementAverageValue
      variable = strain_yy
   [../]

[]

[Outputs]
  exodus = true
[]

test/tests/functions/image_function/image_2d.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file_base = stack/test
    file_suffix = png
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[../]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/examples/coal_mining/cosserat_mc_wp.i

# Strata deformation and fracturing around a coal mine
#
# A 2D geometry is used that simulates a transverse section of
# the coal mine.  The model is actually 3D, but the "x"
# dimension is only 10m long, meshed with 1 element, and
# there is no "x" displacement.  The mine is 300m deep
# and just the roof is studied (0<=z<=300).  The model sits
# between 0<=y<=450.  The excavation sits in 0<=y<=150.  This
# is a "half model": the boundary conditions are such that
# the model simulates an excavation sitting in -150<=y<=150
# inside a model of the region -450<=y<=450.  The
# excavation height is 3m (ie, the excavation lies within
# 0<=z<=3).  Mining is simulated by moving the excavation's
# roof down, until disp_z=-3 at t=1.
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions are:
#  - disp_x = 0 everywhere
#  - disp_y = 0 at y=0 and y=450
#  - disp_z = 0 for y>150
#  - disp_z = -3 at maximum, for 0<=y<=150.  See excav function.
# That is, rollers on the sides, free at top, and prescribed at bottom.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa.  The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = -0.025*(300-z) MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg.  The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 3 MPa
# MC friction angle = 37 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa, varying down to 1 MPa when tensile strain = 1
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
#
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 1
    xmin = -5
    xmax = 5
    nz = 40
    zmin = 0
    zmax = 400.0
    bias_z = 1.1
    ny = 30 # make this a multiple of 3, so y=150 is at a node
    ymin = 0
    ymax = 450
  []
  [left]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 11
    normal = '0 -1 0'
    input = generated_mesh
  []
  [right]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 12
    normal = '0 1 0'
    input = left
  []
  [front]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 13
    normal = '-1 0 0'
    input = right
  []
  [back]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 14
    normal = '1 0 0'
    input = front
  []
  [top]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 15
    normal = '0 0 1'
    input = back
  []
  [bottom]
    type = SideSetsAroundSubdomainGenerator
    new_boundary = 16
    normal = '0 0 -1'
    input = top
  []
  [excav]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '-5 0 0'
    top_right = '5 150 3'
    input = bottom
  []
  [roof]
    type = SideSetsBetweenSubdomainsGenerator
    new_boundary = 21
    master_block = 0
    paired_block = 1
    input = excav
  []
  [hole]
    type = BlockDeletionGenerator
    block_id = 1
    input = roof
  []
[]

[GlobalParams]
  block = 0
  perform_finite_strain_rotations = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
[]

[Kernels]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_x
    component = 0
  [../]
  [./gravity]
    type = Gravity
    use_displaced_mesh = false
    variable = disp_z
    value = -10E-6
  [../]
[]


[AuxVariables]
  [./disp_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_shear]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_internal_parameter
    variable = mc_shear
  [../]
  [./mc_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = mc_plastic_internal_parameter
    variable = mc_tensile
  [../]
  [./wp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_internal_parameter
    variable = wp_shear
  [../]
  [./wp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_internal_parameter
    variable = wp_tensile
  [../]
  [./mc_shear_f]
    type = MaterialStdVectorAux
    index = 6
    property = mc_plastic_yield_function
    variable = mc_shear_f
  [../]
  [./mc_tensile_f]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_yield_function
    variable = mc_tensile_f
  [../]
  [./wp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_yield_function
    variable = wp_shear_f
  [../]
  [./wp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_yield_function
    variable = wp_tensile_f
  [../]
[]



[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '11 12 16 21' # note addition of 16 and 21
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '16'
    value = 0.0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = '11 12'
    value = 0.0
  [../]
  [./roof]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 21
    function = excav_sideways
  [../]
[]

[Functions]
  [./ini_xx]
    type = ParsedFunction
    value = '-0.8*2500*10E-6*(400-z)'
  [../]
  [./ini_zz]
    type = ParsedFunction
    value = '-2500*10E-6*(400-z)'
  [../]
  [./excav_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  e_h  closure_dist'
    vals = '1.0   0    150.0 -3.0 15.0'
    value = 'e_h*max(min((min(t/end_t,1)*(ymax-ymin)+ymin-y)/closure_dist,1),0)'
  [../]
  [./excav_downwards]
    type = ParsedFunction
    vars = 'end_t ymin ymax  e_h  closure_dist'
    vals = '1.0   0    150.0 -3.0 15.0'
    value = 'e_h*min(t/end_t,1)*max(min(((ymax-ymin)+ymin-y)/closure_dist,1),0)'
  [../]
[]

[UserObjects]
  [./mc_coh_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 2.99 # MPa
    value_residual = 3.01 # MPa
    rate = 1.0
  [../]
  [./mc_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.65 # 37deg
  [../]
  [./mc_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.15 # 8deg
  [../]

  [./mc_tensile_str_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0 # MPa
    value_residual = 1.0 # MPa
    rate = 1.0
  [../]
  [./mc_compressive_str]
    type = TensorMechanicsHardeningCubic
    value_0 = 100 # Large!
    value_residual = 100
    internal_limit = 0.1
  [../]

  [./wp_coh_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_tan_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.36 # 20deg
  [../]
  [./wp_tan_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.18 # 10deg
  [../]

  [./wp_tensile_str_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_compressive_str_soften]
    type = TensorMechanicsHardeningCubic
    value_0 = 100
    value_residual = 1
    internal_limit = 1.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3
  [../]

  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = 'ini_xx 0 0  0 ini_xx 0  0 0 ini_zz'
    eigenstrain_name = ini_stress
  [../]

  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    block = 0
    inelastic_models = 'mc wp'
    cycle_models = true
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedMohrCoulombCosseratStressUpdate
    block = 0
    warn_about_precision_loss = false
    host_youngs_modulus = 8E3
    host_poissons_ratio = 0.25
    base_name = mc
    tensile_strength = mc_tensile_str_strong_harden
    compressive_strength = mc_compressive_str
    cohesion = mc_coh_strong_harden
    friction_angle = mc_fric
    dilation_angle = mc_dil
    max_NR_iterations = 10000
    smoothing_tol = 0.1 # MPa  # Must be linked to cohesion
    yield_function_tol = 1E-9 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    block = 0
    warn_about_precision_loss = false
    base_name = wp
    cohesion = wp_coh_harden
    tan_friction_angle = wp_tan_fric
    tan_dilation_angle = wp_tan_dil
    tensile_strength = wp_tensile_str_harden
    compressive_strength = wp_compressive_str_soften
    max_NR_iterations = 10000
    tip_smoother = 0.1
    smoothing_tol = 0.1 # MPa  # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0
  [../]


  [./density]
    type = GenericConstantMaterial
    prop_names = density
    prop_values = 2500
  [../]
[]

[Postprocessors]
  [./subsidence]
    type = PointValue
    point = '0 0 400'
    variable = disp_z
    use_displaced_mesh = false
  [../]
[]
[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options = '-snes_converged_reason'
  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'

  line_search = bt

  nl_abs_tol = 1e-3
  nl_rel_tol = 1e-5

  l_max_its = 30
  nl_max_its = 1000

  start_time = 0.0
  dt = 0.2
  end_time = 0.2

[]

[Outputs]
  file_base = cosserat_mc_wp
  interval = 1
  print_linear_residuals = false
  csv = true
  exodus = true
  [./console]
    type = Console
    output_linear = false
  [../]
[]

test/tests/multiapps/relaxation/bad_relax_factor_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
    initial_condition = 1
  [../]
  [./inverse_v]
    initial_condition = 1
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = inverse_v
  [../]
[]

[AuxKernels]
  [./invert_v]
    type = QuotientAux
    variable = inverse_v
    denominator = v
    numerator = 20.0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./Neumann_right]
    type = NeumannBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./picard_its]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_abs_tol = 1e-14
  relaxation_factor = 2.0
  relaxed_variables = u
[]

[Outputs]
  exodus = true
  execute_on = 'INITIAL TIMESTEP_END'
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_begin
    positions = '0 0 0'
    input_files = picard_relaxed_sub.i
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

modules/tensor_mechanics/test/tests/radial_disp_aux/cylinder_2d_axisymmetric.i

# The purpose of this set of tests is to check the values computed
# by the RadialDisplacementAux AuxKernel. They should match the
# radial component of the displacment for a cylindrical or spherical
# model.
# This particular model is of a cylinder subjected to uniform thermal
# expansion represented using a 2D axisymmetric model.

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD8
  nx = 4
  ny = 4
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[AuxVariables]
  [./temp]
  [../]
  [./rad_disp]
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t+300.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    eigenstrain_names = eigenstrain
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
    use_displaced_mesh = false
  [../]
  [./raddispaux]
    type = RadialDisplacementCylinderAux
    variable = rad_disp
  [../]
[]

[BCs]
  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom top'
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 300
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '51'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  end_time = 1
  dt = 1
  dtmin = 1
[]

[Outputs]
 csv = true
 exodus = true
[]

#[Postprocessors]
#  [./strain_xx]
#    type = SideAverageValue
#    variable =
#    block = 0
#  [../]
#[]

test/tests/kernels/mass_lumping/mass_lumping_jacobian.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -1
  xmax = 1
  nx = 2
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = init_f
  [../]
[]

[Kernels]
  [./time_deriv]
    type = MassLumpedTimeDerivative
    variable = u
  [../]
  [./diff]
    type = FuncCoefDiffusion
    variable = u
    coef = diff_f
  [../]
[]

[Functions]
  [./init_f]
    type = ParsedFunction
    value = max(x,0) #(x>0)
  [../]
  [./diff_f]
    type = ParsedFunction
    value = max(x,0)
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1
  solve_type = 'NEWTON'
  petsc_options_iname = '-snes_type'
  petsc_options_value = 'test'
[]

[Outputs]
  exodus = true
[]

modules/peridynamics/test/tests/restart/2D_mesh_restartable_NOSPD.i


[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1003
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1001
    value = 0.001
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e8
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputePlaneSmallStrainNOSPD
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  start_time = 0
  end_time = 1
  # num_steps = 2

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

[Outputs]
  file_base = 2D_mesh_restartable_NOSPD_out
  exodus = true
  checkpoint = true
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_3d_mouth_dir.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#Crack direction is defined using the crack mouth coordinates.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack3d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackMouth
  crack_mouth_boundary = 900
  radius_inner = '4.0 5.5'
  radius_outer = '5.5 7.0'
  output_variable = 'disp_x'
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]


[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Postprocessors]
  [./disp_x_centercrack]
    type = CrackFrontData
    crack_front_definition = crackFrontDefinition
    variable = disp_x
    crack_front_point_index = 1
  [../]
[]

[Outputs]
  file_base = j_integral_3d_mouth_dir_out
  exodus = true
  csv = true
[]

test/tests/multiapps/multilevel/dt_from_sub_subsub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/fdp_geometric_coupling/fdp_geometric_coupling_sm.i

[Mesh]
  file = twoBlocksContactDiceSlave2OffsetGap.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 100.0
  [../]
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 1 1'
    scale_factor = 10.0
  [../]

  [./tempFunc]
    type = PiecewiseLinear
    x = '0. 3.'
    y = '100.0 440.0'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./left_right_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1 4'
    value = 0.0
  [../]

  [./left_right_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 4'
    value = 0.0
  [../]

  [./left_right_z]
    type = DirichletBC
    variable = disp_z
    boundary = '1 4'
    value = 0.0
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = '2 3'
    function = tempFunc
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e8
    system = Constraint
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.0

    temp = temp
    thermal_expansion = 1e-4
    increment_calculation = Eigen
  [../]
  [./stiffStuff2]
    type = Elastic
    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.0

    temp = temp
    thermal_expansion = 1e-5
    increment_calculation = Eigen
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = '1 2'

    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    block = '1 2'
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Preconditioning]
  [./FDP]
    type = FDP
    full = true
    implicit_geometric_coupling = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -mat_fd_coloring_err -mat_fd_type'
  petsc_options_value = 'lu       1e-8                 ds'

  nl_rel_tol = 1e-10

  l_max_its = 5
  nl_max_its = 3
  dt = 5.0e-1
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

test/tests/kernels/bad_scaling_scalar_kernels/ill_conditioned_field_scalar_system.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
[]

[Variables]
  [./u]
  [../]
  [v]
    family = SCALAR
    initial_condition = 1
  []
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [scalar]
    type = ScalarLagrangeMultiplier
    variable = u
    lambda = v
  []
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[ScalarKernels]
  [reaction]
    type = ParsedODEKernel
    function = '10^20 * v'
    variable = v
  []
  [time]
    type = ODETimeDerivative
    variable = v
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dtmin = 1
  solve_type = NEWTON
  petsc_options = '-pc_svd_monitor -ksp_view_pmat -snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -snes_stol'
  petsc_options_value = 'svd      0'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/mass04.i

# 2phase (PP)
# vanGenuchten, constant-bulk density for each phase, constant porosity, 2components (that exist in both phases)
# unsaturated
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./mass_sp0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./mass_sp1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = ppgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/richards/test/tests/jacobian_1/jn14.i

# unsaturated = true
# gravity = false
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn14
  exodus = false
[]

modules/porous_flow/test/tests/jacobian/chem12.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Dissolution with temperature, with three primary variables and four reactions
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.05
  [../]
  [./b]
    initial_condition = 0.1
  [../]
  [./c]
    initial_condition = 0.15
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1.234
  [../]
  [./eqm_k1]
    initial_condition = 1.999
  [../]
  [./eqm_k2]
    initial_condition = 0.789
  [../]
  [./eqm_k3]
    initial_condition = 1.111
  [../]
  [./ini_sec_conc0]
    initial_condition = 0.02
  [../]
  [./ini_sec_conc1]
    initial_condition = 0.04
  [../]
  [./ini_sec_conc2]
    initial_condition = 0.06
  [../]
  [./ini_sec_conc3]
    initial_condition = 0.08
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = '1E10 2E10 3E10 4E10'
    stoichiometry = '1 1 2 0'
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = '1.1E10 2.2E10 3.3E10 4.4E10'
    stoichiometry = '2 -2 0 0.5'
  [../]
  [./c]
    type = PorousFlowPreDis
    variable = c
    mineral_density = '0.1E10 0.2E10 0.3E10 0.4E10'
    stoichiometry = '3 -3 0 1'
  [../]
  [./temp]
    type = Diffusion
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b c temp'
    number_fluid_phases = 1
    number_fluid_components = 4
    number_aqueous_kinetic = 4
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b c'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b c'
    num_reactions = 4
    equilibrium_constants = 'eqm_k0 eqm_k1 eqm_k2 eqm_k3'
    primary_activity_coefficients = '0.5 0.8 0.9'
    reactions = '1 2 3
                 1 -2 -3
                 2 0 0
                 0 0.5 1'
    specific_reactive_surface_area = '-44.4E-2 22.1E-2 32.1E-1 -50E-2'
    kinetic_rate_constant = '0.678 0.999 1.23 0.3'
    activation_energy = '4.4 3.3 4.5 4.0'
    molar_volume = '3.3 4.4 5.5 6.6'
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = '1.0 1.1 1.2 0.9'
    eta_exponent = '1.2 1.01 1.1 1.2'
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = 'ini_sec_conc0 ini_sec_conc1 ini_sec_conc2 ini_sec_conc3'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

modules/tensor_mechanics/test/tests/ad_2D_geometries/3D-RZ_finiteStrain_test.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces, using 3D geometry.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000 at t = 1.0, respectively. The resulting compressive
# tangential stress is largest at the inner wall and, from the above equation, has a
# value of -271429.
#
# RESULTS are below. Since stresses are average element values, values for the
# edge element and one-element-in are used to extrapolate the stress to the
# inner surface. The vesrion of the tests that are checked use the coarsest meshes.
#
#  Mesh    Radial elem   S(edge elem)  S(one elem in)  S(extrap to surf)
# 1D-SPH
# 2D-RZ        12 (x10)    -265004      -254665        -270174
#  3D          12 (6x6)    -261880      -252811        -266415
#
# 1D-SPH
# 2D-RZ        48 (x10)    -269853      -266710        -271425
#  3D          48 (10x10)  -268522      -265653        -269957
#
# The numerical solution converges to the analytical solution as the mesh is
# refined.

[Mesh]
  file = 3D_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    block = 1
    use_displaced_mesh = true
    use_automatic_differentiation = true
  [../]
[]

[AuxVariables]
  [./stress_theta]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_theta]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_theta]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_theta
    execute_on = timestep_end
  [../]
  [./strain_theta]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 2
    index_j = 2
    variable = strain_theta
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.345
    block = 1
  [../]

  [./elastic_strain]
    type = ADComputeFiniteStrainElasticStress
    block = 1
  [../]
[]

[BCs]
# pin particle along symmetry planes
  [./no_disp_x]
    type = ADDirichletBC
    variable = disp_x
    boundary = xzero
    value = 0.0
  [../]

  [./no_disp_y]
    type = ADDirichletBC
    variable = disp_y
    boundary = yzero
    value = 0.0
  [../]

  [./no_disp_z]
    type = ADDirichletBC
    variable = disp_z
    boundary = zzero
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_x]
    type = ADPressure
    variable = disp_x
    boundary = outer
    component = 0
    function = '200000*t'
  [../]

 [./exterior_pressure_y]
    type = ADPressure
    variable = disp_y
    boundary = outer
    component = 1
    function = '200000*t'
  [../]

[./exterior_pressure_z]
    type = ADPressure
    variable = disp_z
    boundary = outer
    component = 2
    function = '200000*t'
  [../]

  [./interior_pressure_x]
    type = ADPressure
    variable = disp_x
    boundary = inner
    component = 0
    function = '100000*t'
  [../]

  [./interior_pressure_y]
    type = ADPressure
    variable = disp_y
    boundary = inner
    component = 1
    function = '100000*t'
  [../]

  [./interior_pressure_z]
    type = ADPressure
    variable = disp_z
    boundary = inner
    component = 2
    function = '100000*t'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '  201               hypre    boomeramg      10'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

  start_time = 0.0
  end_time = 0.2
  dt = 0.1

[]

[Postprocessors]
  [./strainTheta]
    type = ElementAverageValue
    variable = strain_theta
  [../]
  [./stressTheta]
    type = ElementAverageValue
    variable = stress_theta
  [../]
  [./stressTheta_pt]
    type = PointValue
    point = '5.0 0.0 0.0'
    #bottom inside edge for comparison to theory; use csv = true
    variable = stress_theta
  [../]
[]

[Outputs]
  exodus = true
[]

modules/functional_expansion_tools/examples/2D_interface/main.i

# Basic example coupling a master and sub app at an interface in a 2D model.
# The master app provides a flux term to the sub app via Functional Expansions, which then performs
# its calculations.  The sub app's interface conditions, both value and flux, are transferred back
# to the master app
[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0.0
  xmax = 0.4
  nx = 6
  ymin = 0.0
  ymax = 10.0
  ny = 20
[]

[Variables]
  [./m]
  [../]
[]

[Kernels]
  [./diff_m]
    type = HeatConduction
    variable = m
  [../]
  [./time_diff_m]
    type = HeatConductionTimeDerivative
    variable = m
  [../]
  [./source_m]
    type = BodyForce
    variable = m
    value = 100
  [../]
[]

[Materials]
  [./Impervium]
    type = GenericConstantMaterial
    prop_names =  'thermal_conductivity specific_heat density'
    prop_values = '0.00001              50.0          100.0' # W/(cm K), J/(g K), g/cm^3
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    value = 2
    variable = m
  [../]
[]

[BCs]
  [./interface_value]
    type = FXValueBC
    variable = m
    boundary = right
    function = FX_Basis_Value_Main
  [../]
  [./interface_flux]
    type = FXFluxBC
    boundary = right
    variable = m
    function = FX_Basis_Flux_Main
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '4'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
  [./FX_Basis_Flux_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '5'
    physical_bounds = '0.0 10'
    y = Legendre
  [../]
[]

[UserObjects]
  [./FX_Flux_UserObject_Main]
    type = FXBoundaryFluxUserObject
    function = FX_Basis_Flux_Main
    variable = m
    boundary = right
    diffusivity = thermal_conductivity
  [../]
[]

[Postprocessors]
  [./average_interface_value]
    type = SideAverageValue
    variable = m
    boundary = right
  [../]
  [./total_flux]
    type = SideFluxIntegral
    variable = m
    boundary = right
    diffusivity = thermal_conductivity
  [../]
  [./picard_iterations]
    type = NumPicardIterations
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1.0
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = sub.i
    sub_cycling = true
  [../]
[]

[Transfers]
  [./FluxToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Flux_UserObject_Main
    multi_app_object_name = FX_Basis_Flux_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
  [./FluxToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Flux_Main
    multi_app_object_name = FX_Flux_UserObject_Sub
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_1/brick1_aug_sm.i

[Mesh]
  file = brick1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 100
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
[]


[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_begin
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 4
    paired_boundary = 3
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_x
  [../]
  [./disp_x13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y8]
    type = NodalVariableValue
    nodeid = 7
    variable = disp_y
  [../]
  [./disp_y13]
    type = NodalVariableValue
    nodeid = 12
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_x8 disp_x13 disp_x16 disp_y5 disp_y8 disp_y13 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    tangential_tolerance = 1e-3
    formulation = augmented_lagrange
    system = constraint
    normalize_penalty = true
    penalty = 1e8
    model = frictionless
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/combined/test/tests/thermo_mech/ad-youngs_modulus_function_temp.i

# ---------------------------------------------------------------------------
# This test is designed to verify the variable elasticity tensor functionality in the
# ADComputeFiniteStrainElasticStress class with the elasticity_tensor_has_changed flag
# by varying the young's modulus with temperature. A constant strain is applied
# to the mesh in this case, and the stress varies with the changing elastic constants.
#
# Geometry: A single element cube in symmetry boundary conditions and pulled
#           at a constant displacement to create a constant strain in the x-direction.
#
# Temperature:  The temperature varies from 400K to 700K in this simulation by
#           100K each time step. The temperature is held constant in the last
#           timestep to ensure that the elasticity tensor components are constant
#           under constant temperature.
#
# Results: Because Poisson's ratio is set to zero, only the stress along the x
#          axis is non-zero.  The stress changes with temperature.
#
#    Temperature(K)   strain_{xx}(m/m)     Young's Modulus(Pa)   stress_{xx}(Pa)
#          400              0.001             10.0e6               1.0e4
#          500              0.001             10.0e6               1.0e4
#          600              0.001              9.94e6              9.94e3
#          700              0.001              9.93e6              9.93e3
#
#    The tensor mechanics results align exactly with the analytical results above
#    when this test is run with ComputeIncrementalSmallStrain.  When the test is
#    run with ComputeFiniteStrain, a 0.05% discrepancy between the analytical
#    strains and the simulation strain results is observed, and this discrepancy
#    is carried over into the calculation of the elastic stress.
#-------------------------------------------------------------------------

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 400
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temperature_function]
    type = PiecewiseLinear
    x = '1       4'
    y = '400   700'
  [../]
[]

[Kernels]
  [./heat]
    type = ADDiffusion
    variable = temp
  [../]
  [./TensorMechanics]
    use_displaced_mesh = true
    use_automatic_differentiation = true
  [../]
[]


[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]

 [./elastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./u_left_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_back_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./u_pull_right]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.001
  [../]

  [./temp_bc_1]
    type = ADFunctionDirichletBC
    variable = temp
    preset = false
    boundary = '1 2 3 4'
    function = temperature_function
  [../]
[]

[Materials]
  [./youngs_modulus]
    type = ADPiecewiseLinearInterpolationMaterial
    xy_data = '0          10e+6
               599.9999   10e+6
               600        9.94e+6
               99900      10e3'
    property = youngs_modulus
    variable = temp
  [../]

  [./elasticity_tensor]
    type = ADComputeVariableIsotropicElasticityTensor
    youngs_modulus = youngs_modulus
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ADComputeIncrementalSmallStrain
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  end_time = 5
[]

[Postprocessors]
  [./elastic_strain_xx]
    type = ElementAverageValue
    variable = elastic_strain_xx
  [../]
  [./elastic_stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./temp]
    type = AverageNodalVariableValue
    variable = temp
  [../]
[]

[Outputs]
  exodus = true
[]

modules/heat_conduction/test/tests/ad_heat_conduction/test.i

# This test solves a 1D transient heat equation with a complicated thermal
# conductivity in order to verify jacobian calculation via AD

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmax = 0.001
  ymax = 0.001
[]

[Variables]
  [./T]
    initial_condition = 1.5
  [../]
  [./c]
    initial_condition = 1.5
  [../]
[]

[Kernels]
  [./HeatDiff]
    type = ADHeatConduction
    variable = T
    thermal_conductivity = thermal_conductivity
  [../]
  [./heat_dt]
    type = ADHeatConductionTimeDerivative
    variable = T
    specific_heat = thermal_conductivity
    density_name = thermal_conductivity
  [../]
  [./c]
    type = ADDiffusion
    variable = c
  [../]
[]

[Kernels]
  [./c_dt]
    type = TimeDerivative
    variable = c
  [../]
[]

[BCs]
  [./left_c]
    type = DirichletBC
    variable = c
    boundary = left
    value = 2
  [../]
  [./right_c]
    type = DirichletBC
    variable = c
    boundary = right
    value = 1
  [../]
  [./left_T]
    type = DirichletBC
    variable = T
    boundary = top
    value = 1
  [../]
  [./right_T]
    type = DirichletBC
    variable = T
    boundary = bottom
    value = 2
  [../]
[]

[Materials]
  [./k]
    type = ADThermalConductivityTest
    c = c
    temperature = T
  [../]
[]

[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/numerical_diffusion/fltvd_no_antidiffusion.i

# Using Flux-Limited TVD Advection ala Kuzmin and Turek, but without any antidiffusion
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[Variables]
  [./tracer]
  [../]
[]

[ICs]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass_dot]
    type = MassLumpedTimeDerivative
    variable = tracer
  [../]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = none
    u = tracer
    velocity = '0.1 0 0'
  [../]
[]

[BCs]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_tracer]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = right
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 101
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-1
  nl_abs_tol = 1E-8
  nl_max_its = 500
  timestep_tolerance = 1E-3
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/combined/test/tests/DiffuseCreep/strain.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 2
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);0.1+0.1*v'
    [../]
  [../]
  [./mu]
  [../]
  [./jx]
  [../]
  [./jy]
  [../]
[]

[AuxVariables]
  [./gb]
    family = LAGRANGE
    order  = FIRST
  [../]
  [./creep_strain_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./creep_strain_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./creep_strain_xy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
[]

[Kernels]
  [./conc]
    type = CHSplitConcentration
    variable = c
    mobility = mobility_prop
    chemical_potential_var = mu
  [../]
  [./chempot]
    type = CHSplitChemicalPotential
    variable = mu
    chemical_potential_prop = mu_prop
    c = c
  [../]
  [./flux_x]
    type = CHSplitFlux
    variable = jx
    component = 0
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./flux_y]
    type = CHSplitFlux
    variable = jy
    component = 1
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[AuxKernels]
  [./gb]
    type = FunctionAux
    variable = gb
    function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);v'
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    variable = creep_strain_xx
    rank_two_tensor = creep_strain
    index_i = 0
    index_j = 0
  [../]
  [./creep_strain_yy]
    type = RankTwoAux
    variable = creep_strain_yy
    rank_two_tensor = creep_strain
    index_i = 1
    index_j = 1
  [../]
  [./creep_strain_xy]
    type = RankTwoAux
    variable = creep_strain_xy
    rank_two_tensor = creep_strain
    index_i = 0
    index_j = 1
  [../]
[]

[Materials]
  [./chemical_potential]
    type = DerivativeParsedMaterial
    block = 0
    f_name = mu_prop
    args = c
    function = 'c'
    derivative_order = 1
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    function = 'c*(1.0-c)'
    args = c
    f_name = var_dep
    derivative_order = 1
  [../]
  [./mobility]
    type = CompositeMobilityTensor
    block = 0
    M_name = mobility_prop
    tensors = diffusivity
    weights = var_dep
    args = c
  [../]
  [./phase_normal]
    type = PhaseNormalTensor
    phase = gb
    normal_tensor_name = gb_normal
  [../]
  [./aniso_tensor]
    type = GBDependentAnisotropicTensor
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = aniso_tensor
  [../]
  [./diffusivity]
    type = GBDependentDiffusivity
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = diffusivity
  [../]
  [./diffuse_strain_increment]
    type = FluxBasedStrainIncrement
    xflux = jx
    yflux = jy
    gb = gb
    property_name = diffuse
  [../]
  [./diffuse_creep_strain]
    type = SumTensorIncrements
    tensor_name = creep_strain
    coupled_tensor_increment_names = diffuse
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_max_its = 5
  dt = 20
  num_steps = 5
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact/pressureAugLag.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = false
[]

[Mesh]
  file = pressure.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_yy'
  []
[]

[Contact]
  [./m20_s10]
    master = 20
    slave = 10
    penalty = 1e7
    formulation = augmented_lagrange
    al_penetration_tolerance = 1e-8
    tangential_tolerance = 1e-3
    system = Constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 5
    value = 0.0
  [../]

  [./Pressure]
    [./press]
      boundary = 7
      factor = 1e3
    [../]
  [../]

  [./down]
    type = DirichletBC
    variable = disp_y
    boundary = 8
    value = -2e-3
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.0
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Dampers]
  [./limitX]
    type = MaxIncrement
    max_increment = 1e-5
    variable = disp_x
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  #petsc_options_iname = '-pc_type -pc_hypre_type -snes_type -snes_ls -snes_linesearch_type -ksp_gmres_restart'
  #petsc_options_value = 'hypre    boomeramg      ls         basic    basic                    101'
  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-5
  nl_abs_tol = 1e-6

  l_tol = 1e-8

  l_max_its = 100
  nl_max_its = 20
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/check_error/shear_modulus.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    shear_modulus = -10.0
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/peridynamics/test/tests/jacobian_check/weak_planestress_thermomechanics_smallstrain_NOSPD.i


[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
  out_of_plane_strain = strain_zz
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./strain_zz]
  [../]

  [./temp]
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
    eigenstrain_names = thermal_strain
  [../]
[]

[Kernels]
  [./strain_zz]
    type = WeakPlaneStressNOSPD
    variable = strain_zz
    eigenstrain_names = thermal_strain
  [../]

  [./heat_conduction]
    type = HeatConductionBPD
    variable = temp
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputePlaneSmallStrainNOSPD
    eigenstrain_names = thermal_strain
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-5
    stress_free_temperature = 0.5
    eigenstrain_name = thermal_strain
  [../]

  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./thermal]
    type = ThermalConstantHorizonMaterialBPD
    thermal_conductivity = 1.0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

modules/richards/test/tests/jacobian_2/jn30.i

# two phase with production borehole (both fully_upwind=true and fully_upwind=false)
#
# unsaturated = true
# gravity = true
# supg = true
# transient = true
# wellbore = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
  viscosity = '1E-3 0.5E-3'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      seed = 1
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      seed = 2
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]



[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]


[DiracKernels]
  [./bh_water]
    type = RichardsBorehole
    bottom_pressure = -2
    point_file = jn30.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pwater
    unit_weight = '0 0 0'
    character = 1E12
  [../]
  [./bh_gas]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = jn30.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pgas
    unit_weight = '0 0 0'
    character = 1E12
    fully_upwind = true
  [../]
[]



[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn30
  exodus = false
[]

modules/combined/test/tests/internal_volume/rz_displaced.i

#
# Volume Test
#
# This test is designed to compute the volume of a space when displacements
#   are imposed.
#
# The mesh is composed of one block (1) with two elements.  The mesh is
#   such that the initial volume is 1.  One element face is displaced to
#   produce a final volume of 2.
#
#     r1
#   +----+   -
#   |    |   |
#   +----+   h    V1 = pi * h * r1^2
#   |    |   |
#   +----+   -
#
#   becomes
#
#   +----+
#   |     \
#   +------+      v2 = pi * h/2 * ( r2^2 + 1/3 * ( r2^2 + r2*r1 + r1^2 ) )
#   |      |
#   +------+
#      r2
#
#   r1 = 1
#   r2 = 1.5380168369562588
#   h  = 1/pi
#
#  Note:  Because the InternalVolume PP computes cavity volumes as positive,
#         the volumes reported are negative.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = meshes/rz_displaced.e
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Functions]
  [./disp_x]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.5380168369562588'
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./volumetric_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    volumetric_locking_correction = false
    decomposition_method = EigenSolution
    incremental = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./fred]
    type = RankTwoScalarAux
    rank_two_tensor = total_strain
    variable = volumetric_strain
    scalar_type = VolumetricStrain
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./x]
    type = FunctionDirichletBC
    boundary = 3
    variable = disp_x
    function = disp_x
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 2
    execute_on = 'initial timestep_end'
  [../]
  [./volStrain0]
    type = ElementalVariableValue
    elementid = 0
    variable = volumetric_strain
  [../]
  [./volStrain1]
    type = ElementalVariableValue
    elementid = 1
    variable = volumetric_strain
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/mobility_derivative/AC_mobility_derivative_coupled_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 10
  xmax = 50
  ymin = 25
  ymax = 50
[]

[Variables]
  [./op]
  [../]
  [./v]
  [../]
[]

[ICs]
  [./op_IC]
    type = SmoothCircleIC
    x1 = 25.0
    y1 = 25.0
    radius = 15.0
    invalue = 0.9
    outvalue = 0.1
    int_width = 3.0
    variable = op
  [../]
  [./v_IC]
    type = BoundingBoxIC
    x1 = 0.0
    x2 = 25.0
    y1 = 0.0
    y2 = 50.0
    inside = 1.0
    outside = 0.0
    variable = v
  [../]
[]

[Kernels]
  [./op_dot]
    type = TimeDerivative
    variable = op
  [../]
  [./op_bulk]
    type = AllenCahn
    variable = op
    f_name = F
    mob_name = L
    args = v
  [../]
  [./op_interface]
    type = ACInterface
    variable = op
    kappa_name = 1
    mob_name = L
    args = v
  [../]
  [./v_dot]
    type = TimeDerivative
    variable = v
  [../]
  [./v_diff]
    type = MatDiffusion
    variable = v
    diffusivity = 50.0
  [../]
[]

[Materials]
  [./consts]
    type = DerivativeParsedMaterial
    f_name  = L
    function = 'l:=0.1+1*(v+op)^2; if(l<0.01, 0.01, l)'
    args = 'op v'
    outputs = exodus
    output_properties = 'L dL/dop dL/dv'
    derivative_order = 2
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'op'
    function = '2*op^2*(1-op)^2 - 0.2*op'
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 15
  nl_rel_tol = 1.0e-9

  start_time = 0.0
  num_steps = 10
  dt = 0.2
[]

[Outputs]
  interval = 5
  print_linear_residuals = false
  exodus = true
[]

modules/tensor_mechanics/test/tests/cp_user_object/user_object_Voce_BCC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
  nx = 2
  ny = 2
[]

[GlobalParams]
  volumetric_locking_correction = true
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
    use_displaced_mesh = true
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./gss]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[UserObjects]
  [./prop_read]
    type = ElementPropertyReadFile
    prop_file_name = 'euler_ang_file.txt'
    # Enter file data as prop#1, prop#2, .., prop#nprop
    nprop = 3
    read_type = element
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./e_yy]
    type = RankTwoAux
    variable = e_yy
    rank_two_tensor = lage
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./fp_yy]
    type = RankTwoAux
    variable = fp_yy
    rank_two_tensor = fp
    index_j = 1
    index_i = 1
    execute_on = timestep_end
  [../]
  [./gss]
    type = MaterialStdVectorAux
    variable = gss
    property = state_var_gss
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = tdisp
  [../]
[]

[UserObjects]
  [./slip_rate_gss]
    type = CrystalPlasticitySlipRateGSS
    variable_size = 48
    slip_sys_file_name = input_slip_sys_bcc48.txt
    num_slip_sys_flowrate_props = 2
    flowprops = '1 12 0.001 0.1 13 24 0.001 0.1 25 48 0.001 0.1'
    uo_state_var_name = state_var_gss
  [../]
  [./slip_resistance_gss]
    type = CrystalPlasticitySlipResistanceGSS
    variable_size = 48
    uo_state_var_name = state_var_gss
  [../]
  [./state_var_gss]
    type = CrystalPlasticityStateVariable
    variable_size = 48
    groups = '0 12 24 48'
    group_values =  '50 51 52'
    uo_state_var_evol_rate_comp_name = state_var_evol_rate_comp_voce
    scale_factor = 1.0
  [../]
  [./state_var_evol_rate_comp_voce]
    type = CrystalPlasticityStateVarRateComponentVoce
    variable_size = 48
    crystal_lattice_type = 'BCC'
    groups = '0 12 24 48'
    h0_group_values = '1 2 3'
    tau0_group_values = '50 51 52'
    tauSat_group_values = '70 81 92'
    hardeningExponent_group_values = '1 2 3'
    selfHardening_group_values ='4 5 6'
    coplanarHardening_group_values='7 8 9'
    GroupGroup_Hardening_group_values = '10 20 30
                                         40 50 60
                                         70 80 90'
    uo_slip_rate_name = slip_rate_gss
    uo_state_var_name = state_var_gss
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainUObasedCP
    stol = 1e-2
    tan_mod_type = exact
    uo_slip_rates = 'slip_rate_gss'
    uo_slip_resistances = 'slip_resistance_gss'
    uo_state_vars = 'state_var_gss'
    uo_state_var_evol_rate_comps = 'state_var_evol_rate_comp_voce'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'disp_x disp_y'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
    read_prop_user_object = prop_read
  [../]
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./e_yy]
    type = ElementAverageValue
    variable = e_yy
  [../]
  [./fp_yy]
    type = ElementAverageValue
    variable = fp_yy
  [../]
  [./gss]
    type = ElementAverageValue
    variable = gss
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.01
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.01
  num_steps = 10
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

test/tests/meshgenerators/lower_d_block_generator/names.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 10
  []

  [./lower_d_block]
    type = LowerDBlockFromSidesetGenerator
    input = gmg
    new_block_id = 10
    sidesets = 'bottom bottom right top left'
  []
[]

[Variables]
  [./u]
    block = 0
  [../]
  [./v]
    block = 10
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
    block = 0
  [../]
  [./srcv]
    type = BodyForce
    block = 10
    variable = v
    function = 1
  [../]
  [./time_v]
    type = TimeDerivative
    block = 10
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/chemistry/except7.i

# Exception test.
# Incorrect number of stoichiometric coefficients

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_equilibrium = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1E2
  [../]
  [./eqm_k1]
    initial_condition = 1E-2
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'a b'
    num_reactions = 2
    equilibrium_constants = 'eqm_k0 eqm_k1'
    primary_activity_coefficients = '1 1'
    secondary_activity_coefficients = '1 1'
    reactions = '2 0'
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/tensor_mechanics/test/tests/jacobian/cto07.i

# checking jacobian for 3-plane linear plasticity using SimpleTester.
#
# This is like the test multi/three_surface11.i
# Plasticity models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# trial stress_yy = 0 and stress_zz = 2
#
# Then SimpleTester0 should activate and the algorithm will return to
# stress_zz=1
# internal0 should be 1.0E-6


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 0 0  0 0 2'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    tangent_operator = linear
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/elastic_patch/elastic_patch.i

# Patch Test

# This test is designed to compute constant xx, yy, zz, xy, yz, and zx
#  stress on a set of irregular hexes.  The mesh is composed of one
#  block with seven elements.  The elements form a unit cube with one
#  internal element.  There is a nodeset for each exterior node.

# The cube is displaced by 1e-6 units in x, 2e-6 in y, and 3e-6 in z.
#  The faces are sheared as well (1e-6, 2e-6, and 3e-6 for xy, yz, and
#  zx).  This gives a uniform strain/stress state for all six unique
#  tensor components.

# With Young's modulus at 1e6 and Poisson's ratio at 0, the shear
#  modulus is 5e5 (G=E/2/(1+nu)).  Therefore,
#
#  stress xx = 1e6 * 1e-6 = 1
#  stress yy = 1e6 * 2e-6 = 2
#  stress zz = 1e6 * 3e-6 = 3
#  stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
#             (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
#  stress yz = 2 * 5e5 * 2e-6 / 2 = 1
#  stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = '1 2 3 4 5 6 7'
[]

[Mesh]#Comment
  file = elastic_patch.e
[] # Mesh

[Functions]
  [./rampConstant1]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1e-6
  [../]
  [./rampConstant2]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 2e-6
  [../]
  [./rampConstant3]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 3e-6
  [../]
  [./rampConstant4]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 4e-6
  [../]
  [./rampConstant6]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 6e-6
  [../]
[] # Functions

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

[] # Variables

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydrostatic]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./firstinv]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./secondinv]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./thirdinv]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./maxprincipal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./midprincipal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./minprincipal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./direction]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./max_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sint]
    order = CONSTANT
    family = MONOMIAL
  [../]

[] # AuxVariables

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]

  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./elastic_energy]
    type = ElasticEnergyAux
    variable = elastic_energy
  [../]
  [./vonmises]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = vonmisesStress
  [../]
  [./hydrostatic]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = hydrostatic
    scalar_type = hydrostatic
  [../]
  [./fi]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = firstinv
    scalar_type = firstinvariant
  [../]
  [./si]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = secondinv
    scalar_type = secondinvariant
  [../]
  [./ti]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = thirdinv
    scalar_type = thirdinvariant
  [../]
  [./maxprincipal]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = maxprincipal
    scalar_type = MaxPRiNCIpAl
  [../]
  [./midprincipal]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = midprincipal
    scalar_type = MidPRiNCIpAl
  [../]
  [./minprincipal]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = minprincipal
    scalar_type = MiNPRiNCIpAl
  [../]
  [./direction]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = direction
    scalar_type = direction
    direction = '1 1 1'
  [../]
  [./max_shear]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = max_shear
    scalar_type = MaxShear
  [../]
  [./sint]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = sint
    scalar_type = StressIntensity
  [../]


[] # AuxKernels

[BCs]

  [./node1_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./node1_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = rampConstant2
  [../]
  [./node1_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 1
    function = rampConstant3
  [../]

  [./node2_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = rampConstant1
  [../]
  [./node2_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = rampConstant2
  [../]
  [./node2_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 2
    function = rampConstant6
  [../]

  [./node3_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 3
    function = rampConstant1
  [../]
  [./node3_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./node3_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 3
    function = rampConstant3
  [../]

  [./node4_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./node4_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
  [./node4_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]

  [./node5_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 5
    function = rampConstant1
  [../]
  [./node5_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = rampConstant4
  [../]
  [./node5_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 5
    function = rampConstant3
  [../]

  [./node6_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 6
    function = rampConstant2
  [../]
  [./node6_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 6
    function = rampConstant4
  [../]
  [./node6_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 6
    function = rampConstant6
  [../]

  [./node7_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 7
    function = rampConstant2
  [../]
  [./node7_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 7
    function = rampConstant2
  [../]
  [./node7_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 7
    function = rampConstant3
  [../]

  [./node8_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 8
    function = rampConstant1
  [../]
  [./node8_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 8
    function = rampConstant2
  [../]
  [./node8_z]
    type = DirichletBC
    variable = disp_z
    boundary = 8
    value = 0.0
  [../]


[] # BCs

[Materials]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

  [./strain]
    type = ComputeFiniteStrain
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

[] # Materials

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[] # Executioner

[Outputs]
  exodus = true
[] # Outputs

modules/combined/test/tests/frictional_contact/single_point_2d/single_point_2d.i

[Mesh]
  file = single_point_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./horizontal_movement]
    type = ParsedFunction
    value = t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    save_in = 'saved_x saved_y'
    diag_save_in = 'diag_saved_x diag_saved_y'
  [../]
[]


[AuxKernels]
  [./incslip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./incslip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./botx2]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./boty2]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = -0.005
  [../]
[]

[Materials]
  [./bottom]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1.0e9
    poissons_ratio = 0.3
  [../]
  [./top]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu    superlu_dist'
  petsc_options = '-mat_superlu_dist_iterrefine -mat_superlu_dist_replacetinypivot'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 200
  dt = 0.001
  end_time = 0.01
  num_steps = 1000
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  dtmin = 0.001
  l_tol = 1e-3
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = coulomb
    system = constraint
    friction_coefficient = '0.25'
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    master = '2'
    slave = '3'
  [../]
[]

modules/peridynamics/test/tests/jacobian_check/thermomechanics_2D_FNOSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./temp]
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
    stabilization = FORCE
    eigenstrain_names = thermal
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConductionBPD
    variable = temp
  [../]
[]

[Materials]
  [./linelast]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeForceStabilizedSmallStrainNOSPD
    eigenstrain_names = thermal
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = thermal
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./thermal]
    type = ThermalConstantHorizonMaterialBPD
    thermal_conductivity = 1.0
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

test/tests/markers/two_circle_marker/two_circle_marker.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.02
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 6
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  initial_steps = 1
  initial_marker = two_circle_marker
  cycles_per_step = 1
  marker = two_circle_marker
  max_h_level = 1
  [./Markers]
    [./two_circle_marker]
      type = TwoCircleMarker
      point1 = '0.5 0.5 0'
      radius1 = 0.3
      point2 = '0.35 0.25 0'
      radius2 = 0.3
      inside = refine
      outside = coarsen
    [../]
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    print_mesh_changed_info = true
  [../]
[]

modules/combined/test/tests/gravity/gravity_qp_select_sm.i

# This test uses small strain formulation, and the use_displaced_mesh
# is set to false for the kernels
#
# Gravity Test
#
# This test is similar to the other gravity tests, but it also tests the
# capability in MaterialTensorAux to return the stress of a single,
# specified integration point, rather than the element average.
# To get the stress at a single integration point, set the parameter
# qp_select to the integration point number (i.e. 0-9 for a quad 8)
# in the AuxKernel
#
# The mesh for this problem is a unit square.
#
# The boundary conditions for this problem are as follows.  The
#   displacement is zero on each of side that faces a negative
#   coordinate direction.  The acceleration of gravity is 20.
#
# The material has a Young's modulus of 1e6 and a density of 2.
#
# The analytic solution for the displacement along the bar is:
#
# u(x) = -b*x^2/(2*E)+b*L*x/E
#
# The displacement at x=L is b*L^2/(2*E) = 2*20*1*1/(2*1e6) = 0.00002.
#
# The analytic solution for the stress along the bar assuming linear
#   elasticity is:
#
# S(x) = b*(L-x)
#
# The stress at x=0 is b*L = 2*20*1 = 40.
#
# Note:  The isoparametric coordinate for a quad8 (fourth order) element
# is: +/- 0.77459667 and 0.  For a 1 unit square with the edge of
# the element in the x = 0 plane, there would be an integration point
# at x_coordinate 0.5 - 0.5*0.77459667 (0.11270167), 0.5, and
# 0.50 + 0.5*0.77459667 (0.88729834).
#
# The corresponding stresses are:
#
# S(0.11270167) = 40(1-0.11270167) = 35.491933
# S(0.5) = 40(1-0.5) = 20
# S(0.88729834) = 40(1-0.88729834) = 4.5080664
#
# These stresses are a precise match to the simulation result.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Mesh]
  file = gravity_2D.e
[]

[Variables]
  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]
  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_5]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_6]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_7]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_8]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[Kernels]
  [./gravity]
    type = Gravity
    variable = disp_x
    value = 20
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_xx_qp_0]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx_qp_0
    index = 0
    qp_select = 0
  [../]
  [./stress_xx_qp_1]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx_qp_1
    index = 0
    qp_select = 1
  [../]
  [./stress_xx_qp_2]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx_qp_2
    index = 0
    qp_select = 2
  [../]
  [./stress_xx_qp_3]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx_qp_3
    index = 0
    qp_select = 3
  [../]
  [./stress_xx_qp_4]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx_qp_4
    index = 0
    qp_select = 4
  [../]
  [./stress_xx_qp_5]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx_qp_5
    index = 0
    qp_select = 5
  [../]
  [./stress_xx_qp_6]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx_qp_6
    index = 0
    qp_select = 6
  [../]
  [./stress_xx_qp_7]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx_qp_7
    index = 0
    qp_select = 7
  [../]
  [./stress_xx_qp_8]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx_qp_8
    index = 0
    qp_select = 8
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_y
    boundary = 5
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 1e6
    bulk_modulus = 0.333333333333333e6

    formulation = NonlinearPlaneStrain
  [../]

  [./density]
    type = Density
    block = 1
    density = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  file_base = gravity_qp_select_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/porous_flow/test/tests/dirackernels/bh_except15.i

# fully-saturated
# production
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/combined/test/tests/solid_mechanics/Rayleigh_damping/HHT_time_integration/Rayleigh_HHT.i

# Test for rayleigh damping implemented using HHT time integration
#
# The test is for an 1-D bar element of unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# zeta and eta correspond to the stiffness and mass proportional
# rayleigh damping alpha, beta and gamma are HHT time integration
# parameters The equation of motion in terms of matrices is:
#
# M*accel + (eta*M+zeta*K)*[(1+alpha)vel-alpha vel_old]
#   + alpha*(K*disp - K*disp_old) + K*disp = P(t+alpha dt)*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + eta*density*[(1+alpha)vel-alpha vel_old] +
#   zeta*[(1+alpha)*d/dt(Div stress)- alpha*d/dt(Div stress_old)] +
#   alpha *(Div stress - Div stress_old) +Div Stress= P(t+alpha dt)
#
# The first two terms on the left are evaluated using the Inertial
# force kernel The next three terms on the left involving zeta and
# alpha are evaluated using the StressDivergence Kernel The residual
# due to Pressure is evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure
# becomes constant.  Alpha equal to zero will result in Newmark
# integration.
[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]

  [./DynamicTensorMechanics]
    use_automatic_differentiation = true
    alpha = 0.11
    zeta = 0.1
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
    eta=0.1
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
    eta=0.1
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
    eta = 0.1
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
     type = RankTwoAux
     variable = stress_yy
     rank_two_tensor = stress
     index_i = 1
     index_j = 1
  [../]
  [./strain_yy]
     type = RankTwoAux
     variable = strain_yy
     rank_two_tensor = total_strain
     index_i = 1
     index_j = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
   type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
    boundary = bottom
    function = pressure
    factor = 1
    alpha = 0.11
    [../]
  [../]
[]

[Materials]
  [./elastic]
    type = ComputeIsotropicElasticityTensor
    block = '0'
    youngs_modulus = 210e+09
    poissons_ratio = 0
  [../]
  [./elastic_strain]
    type= ComputeFiniteStrain
    block = '0'
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
    block = '0'
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]
[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 2
  dtmax = 0.1
  dtmin = 0.1
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
  [./vel_ic]
    type = PiecewiseLinear
    x = '0.0 0.5 1.0'
    y = '0.1 0.1 0.1'
    scale_factor = 1
  [../]
[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
   [./disp]
     type = NodalMaxValue
     variable = disp_y
     boundary = bottom
   [../]
   [./vel]
     type = NodalMaxValue
     variable = vel_y
     boundary = bottom
   [../]
   [./accel]
     type = NodalMaxValue
     variable = accel_y
     boundary = bottom
   [../]
   [./stress_yy]
      type = ElementAverageValue
      variable = stress_yy
   [../]
   [./strain_yy]
      type = ElementAverageValue
      variable = strain_yy
   [../]

[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/multi/three_surface08.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 2.0E-6m in y direction and 0.5E-6 in z direction.
# trial stress_yy = 2.0 and stress_zz = 0.5
#
# Then SimpleTester1 and SimpleTester2 should activate and the algorithm will return to
# the corner stress_yy=1.0, stress_zz=0.5
# internal1 should be 1.0, and internal2 should be 0

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2.0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.5E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface08
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/throw_test.i

# Illustrates throwing an Exception from a Material.  In this case we
# don't actually recover from the segfault (so it is a RunException
# test) but in practice one could do so.  The purpose of this test is
# to ensure that exceptions can be thrown from Materials with stateful
# material properties without reading/writing to/from uninitialized
# memory.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 0
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = t
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 20
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 2
    internal_limit = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 1
    tip_smoother = 5
    smoothing_tol = 5
    yield_function_tol = 1E-10
  [../]
[]

[Executioner]
  end_time = 1
  dt = 1
  dtmin = 1
  type = Transient
[]

[Outputs]
  file_base = SEGFAULT
  csv = true
[]

test/tests/time_steppers/timesequence_stepper/exodustimesequence.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax =  1
  ymin = -1
  ymax =  1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  end_time = 4.0
  [./TimeStepper]
    type = ExodusTimeSequenceStepper
    mesh = timesequence_no_start_time.e
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/dirackernels/bh_except07.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = bh02.bh
    use_mobility = true
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/tensor_mechanics/test/tests/auxkernels/ranktwoscalaraux.i

[Mesh]
  displacements = 'disp_x disp_y disp_z'
  [generated_mesh]
    type = GeneratedMeshGenerator
    elem_type = HEX8
    dim = 3
    nx = 1
    ny = 1
    nz = 1
    xmin = 0.0
    xmax = 1.0
    ymin = 0.0
    ymax = 1.0
    zmin = 0.0
    zmax = 1.0
  []
  [node]
    type = ExtraNodesetGenerator
    coord = '0.0 0.0 0.0'
    new_boundary = 6
    input = generated_mesh
  []
  [snode]
    type = ExtraNodesetGenerator
    coord = '1.0 0.0 0.0'
    new_boundary = 7
    input = node
  []
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
 [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]



[Materials]
  [./fplastic]
    type = FiniteStrainPlasticMaterial
    block = 0
    yield_stress='0. 445. 0.05 610. 0.1 680. 0.38 810. 0.95 920. 2. 950.'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '2.827e5 1.21e5 1.21e5 2.827e5 1.21e5 2.827e5 0.808e5 0.808e5 0.808e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Functions]
 [./topfunc]
   type = ParsedFunction
   value = 't'
 [../]
[]

[BCs]
  [./bottom3]
    type = DirichletBC
    variable = disp_z
    boundary = 0
    value = 0.0
  [../]
  [./top]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 5
    function = topfunc
  [../]
  [./corner1]
    type = DirichletBC
    variable = disp_x
    boundary = 6
    value = 0.0
  [../]
  [./corner2]
    type = DirichletBC
    variable = disp_y
    boundary = 6
    value = 0.0
  [../]
  [./corner3]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./side1]
    type = DirichletBC
    variable = disp_y
    boundary = 7
    value = 0.0
  [../]
  [./side2]
    type = DirichletBC
    variable = disp_z
    boundary = 7
    value = 0.0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./peeq]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydrostatic]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./L2norm]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./vonmises]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = VonMisesStress
  [../]
  [./hydrostatic]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = hydrostatic
    scalar_type = Hydrostatic
  [../]
  [./L2norm]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = L2norm
    scalar_type = L2norm
  [../]
  [./peeq]
    type = RankTwoScalarAux
    rank_two_tensor = plastic_strain
    variable = peeq
    scalar_type = EffectiveStrain
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./peeq]
    type = ElementAverageValue
    variable = peeq
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./hydrostatic]
    type = ElementAverageValue
    variable = hydrostatic
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./L2norm]
    type = ElementAverageValue
    variable = L2norm
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Executioner]

  type = Transient

  dt=0.1
  dtmin=0.1
  dtmax=1
  end_time=1.0

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/hyperelastic_viscoplastic/one_elem_linear_harden.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./peeq]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./peeq]
    type = MaterialRealAux
    variable = peeq
    property = ep_eqv
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = '0.01*t'
  [../]
[]

[UserObjects]
  [./flowstress]
    type = HEVPLinearHardening
    yield_stress = 100
    slope = 10
    intvar_prop_name = ep_eqv
  [../]
  [./flowrate]
    type = HEVPFlowRatePowerLawJ2
    reference_flow_rate = 0.0001
    flow_rate_exponent = 50.0
    flow_rate_tol = 1
    strength_prop_name = flowstress
  [../]
  [./ep_eqv]
     type = HEVPEqvPlasticStrain
     intvar_rate_prop_name = ep_eqv_rate
  [../]
  [./ep_eqv_rate]
     type = HEVPEqvPlasticStrainRate
     flow_rate_prop_name = flowrate
  [../]
[]

[Materials]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'ux uy uz'
  [../]
  [./viscop]
    type = FiniteStrainHyperElasticViscoPlastic
    block = 0
    resid_abs_tol = 1e-18
    resid_rel_tol = 1e-8
    maxiters = 50
    max_substep_iteration = 5
    flow_rate_user_objects = 'flowrate'
    strength_user_objects = 'flowstress'
    internal_var_user_objects = 'ep_eqv'
    internal_var_rate_user_objects = 'ep_eqv_rate'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    C_ijkl = '2.8e5 1.2e5 1.2e5 2.8e5 1.2e5 2.8e5 0.8e5 0.8e5 0.8e5'
    fill_method = symmetric9
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./peeq]
    type = ElementAverageValue
    variable = peeq
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.02
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  dtmax = 10.0
  nl_rel_tol = 1e-10
  dtmin = 0.02
  num_steps = 10
[]

[Outputs]
  file_base = one_elem_linear_harden
  exodus = true
  csv = false
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update7.i

# MC update version, with only Tensile with tensile strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.
# Returns to close to the edge of tensile yield

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-1 0.1 0.2  0.1 15 -0.3  0.2 -0.3 14'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/functional_expansion_tools/examples/1D_volumetric_Cartesian/main.i

# Basic example coupling a master and sub app in a 1D Cartesian volume.
#
# The master app provides field values to the sub app via Functional Expansions, which then performs
# its calculations. The sub app's solution field values are then transferred back to the master app
# and coupled into the solution of the master app solution.
#
# This example couples Functional Expansions via AuxVariable.
[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = HeatConduction
    variable = m
  [../]
  [./time_diff_m]
    type = HeatConductionTimeDerivative
    variable = m
  [../]
  [./s_in] # Add in the contribution from the SubApp
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[Materials]
  [./Unobtanium]
    type = GenericConstantMaterial
    prop_names =  'thermal_conductivity specific_heat density'
    prop_values = '1.0                  1.0           1.0' # W/(cm K), J/(g K), g/cm^3
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'left right'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

modules/chemical_reactions/test/tests/aqueous_equilibrium/water_dissociation.i

# Dissociation of H2O at 25C
# The dissociation of water into H+ and OH- is given by
# the equilibrium reaction H20 = H+ + OH-
#
# This can be entered in the ReactionNetwork block using
# Aqueous equilibrium reaction: - H+ = OH-, Keq = 10^(-13.9951)
#
# Note that H2O does not need to be explicitly included.
#
# The primary chemical species is H+, and the secondary equilibrium
# species is OH-.
#
# The initial concentration of H+ is 10^-7, which is its value in neutral
# water. The pH of this water is therefore 7.

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[AuxVariables]
  [./ph]
  [../]
[]

[AuxKernels]
  [./ph]
    type = PHAux
    h_conc = h+
    variable = ph
  [../]
[]

[Variables]
  [./h+]
    initial_condition = 1.0e-7
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = h+
    secondary_species = oh-
    reactions = '- h+ = oh- -13.9951'
  [../]
[]

[Kernels]
  [./h+_ie]
    type = PrimaryTimeDerivative
    variable = h+
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity porosity'
    prop_values = '1e-7 0.25'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./h+]
    type = ElementIntegralVariablePostprocessor
    variable = h+
    execute_on = 'initial timestep_end'
  [../]
  [./oh-]
    type = ElementIntegralVariablePostprocessor
    variable = oh-
    execute_on = 'initial timestep_end'
  [../]
  [./ph]
    type = ElementIntegralVariablePostprocessor
    variable = ph
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  perf_graph = true
  csv = true
[]

modules/xfem/test/tests/solid_mechanics_basic/sm/square_branch_quad_2d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
[]

[UserObjects]
  [./line_seg_cut_uo0]
    type = LineSegmentCutUserObject
    cut_data = '-1.0000e-10   6.6340e-01   6.6340e-01  -1.0000e-10'
    time_start_cut = 0.0
    time_end_cut = 1.0
  [../]
  [./line_seg_cut_uo1]
    type = LineSegmentCutUserObject
    cut_data = '3.3120e-01   3.3200e-01   1.0001e+00   3.3200e-01'
    time_start_cut = 1.0
    time_end_cut = 2.0
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./right_disp_x]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
  [./top_disp_y]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionDirichletBC
    boundary = 1
    variable = disp_x
    function = right_disp_x
  [../]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = top_disp_y
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.2
  num_steps = 5000
[]

[Outputs]
  file_base = square_branch_quad_2d_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/geomsearch/3d_moving_penetration/pl_test1qtt.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test1qtt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.06
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test1qtt_out
  exodus = true
[]

modules/navier_stokes/test/tests/ins/RZ_cone/RZ_cone_no_parts.i

# This input file tests several different things:
# .) The axisymmetric (RZ) form of the governing equations.
# .) An open boundary.
# .) Not integrating the pressure by parts, thereby requiring a pressure pin.
# .) Natural boundary condition at the outlet.
[GlobalParams]
  integrate_p_by_parts = false
  laplace = false
  gravity = '0 0 0'
[]

[Mesh]
  file = '2d_cone.msh'
[]

[Problem]
  coord_type = RZ
[]

[Preconditioning]
  [./SMP_PJFNK]
    type = SMP
    full = true
    solve_type = Newton
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.005
  dtmin = 0.005
  num_steps = 5
  l_max_its = 100

  # Note: The Steady executioner can be used for this problem, if you
  # drop the INSMomentumTimeDerivative kernels and use the following
  # direct solver options.
  # petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -ksp_type'
  # petsc_options_value = 'lu NONZERO 1.e-10 preonly'

  # Block Jacobi works well for this problem, as does "-pc_type asm
  # -pc_asm_overlap 2", but an overlap of 1 does not work for some
  # reason?
  petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_levels'
  petsc_options_value = 'bjacobi  ilu          4'

  nl_rel_tol = 1e-12
  nl_max_its = 6
[]

[Outputs]
  csv = true
  console = true
  [./out]
    type = Exodus
  [../]
[]

[Variables]
  [./vel_x]
    # Velocity in radial (r) direction
    family = LAGRANGE
    order = SECOND
  [../]
  [./vel_y]
    # Velocity in axial (z) direction
    family = LAGRANGE
    order = SECOND
  [../]
  [./p]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[BCs]
  [./p_corner]
    # This is required, because pressure term is *not* integrated by parts.
    type = DirichletBC
    boundary = top_right
    value = 0
    variable = p
  [../]
  [./u_out]
    type = INSMomentumNoBCBCTractionForm
    boundary = top
    variable = vel_x
    u = vel_x
    v = vel_y
    p = p
    component = 0
  [../]
  [./v_out]
    type = INSMomentumNoBCBCTractionForm
    boundary = top
    variable = vel_y
    u = vel_x
    v = vel_y
    p = p
    component = 1
  [../]
  [./u_in]
    type = DirichletBC
    boundary = bottom
    variable = vel_x
    value = 0
  [../]
  [./v_in]
    type = FunctionDirichletBC
    boundary = bottom
    variable = vel_y
    function = 'inlet_func'
  [../]
  [./u_axis_and_walls]
    type = DirichletBC
    boundary = 'left right'
    variable = vel_x
    value = 0
  [../]
  [./v_no_slip]
    type = DirichletBC
    boundary = 'right'
    variable = vel_y
    value = 0
  [../]
[]


[Kernels]
  [./x_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_x
  [../]
  [./y_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_y
  [../]
  [./mass]
    type = INSMassRZ
    variable = p
    u = vel_x
    v = vel_y
    p = p
  [../]
  [./x_momentum_space]
    type = INSMomentumTractionFormRZ
    variable = vel_x
    u = vel_x
    v = vel_y
    p = p
    component = 0
  [../]
  [./y_momentum_space]
    type = INSMomentumTractionFormRZ
    variable = vel_y
    u = vel_x
    v = vel_y
    p = p
    component = 1
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 'volume'
    prop_names = 'rho mu'
    prop_values = '1  1'
  [../]
[]

[Functions]
  [./inlet_func]
    type = ParsedFunction
    value = '-4 * x^2 + 1'
  [../]
[]

[Postprocessors]
  [./flow_in]
    type = VolumetricFlowRate
    vel_x = vel_x
    vel_y = vel_y
    boundary = 'bottom'
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
  [./flow_out]
    type = VolumetricFlowRate
    vel_x = vel_x
    vel_y = vel_y
    boundary = 'top'
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
[]

modules/combined/test/tests/simple_contact/simple_contact_dirac_test.i

# Note: Run merged.i to generate a solution to compare to that doesn't use contact.
# This version of the test uses DiracKernel based contact

[Mesh]
  file = contact.e
  # PETSc < 3.5.0 requires the iteration patch_update_strategy to
  # avoid PenetrationLocator warnings, which are currently treated as
  # errors by the TestHarness.
  patch_update_strategy = 'iteration'
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx'
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e5
    formulation = kinematic
    system = DiracKernel
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]

  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'

  line_search = 'none'

  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/ad_elastic/rspherical_finite_elastic-noad.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 5
[]

[Problem]
  coord_type = RSPHERICAL
[]

[GlobalParams]
  displacements = 'disp_r'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = StressDivergenceRSphericalTensors
    component = 0
    variable = disp_r
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./center]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
  [./strain]
    type = ComputeRSphericalFiniteStrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
  file_base = rspherical_finite_elastic_out
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update12.i

# MC update version, with only compressive with compressive strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Return to the stress_I = stress_II ~1 edge

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-2 0 0  0 0 0  0 0 -2.01'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/stochastic_tools/test/tests/multiapps/batch_full_solve_multiapp/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = ADDiffusion
    variable = u
  []
  [time]
    type = ADTimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Postprocessors]
  [average]
    type = AverageNodalVariableValue
    variable = u
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.25
  solve_type = NEWTON
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/pressure_pulse/pp_fu_lumped_22.i

# investigating pressure pulse in 1D with 2 phase
# transient

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E3
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E3
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[ICs]
  [./water_ic]
    type = ConstantIC
    value = 2E6
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2E6
    variable = pgas
  [../]
[]


[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pwater
  [../]
  [./left_gas]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pgas
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas pconstraint'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
  [./pconstraint]
    type = RichardsPPenalty
    variable = pgas
    a = 1E-8
    lower_var = pwater
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    viscosity = '1E-3 1E-5'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_monitor -snes_linesearch_monitor'
    petsc_options_iname = '-pc_factor_shift_type'
    petsc_options_value = 'nonzero'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  dtmin = 1E3
  end_time = 1E4
  l_tol = 1.e-4
  nl_rel_tol = 1.e-7
  nl_max_its = 10
  l_max_its = 20
  line_search = 'none'
[]

[Outputs]
  file_base = pp_fu_lumped_22
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
  [./console]
    type = Console
    interval = 1
  [../]
[]

test/tests/outputs/iterative/output_start_step.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    start_step = 12
  [../]
[]

modules/tensor_mechanics/test/tests/mean_cap_TC/small_deform3.i

# apply nonuniform compression in x, y and z directions such that
# trial_stress(0, 0) = 2
# trial_stress(1, 1) = -8
# trial_stress(2, 2) = -10
# With compressive_strength = -1, the algorithm should return to trace(stress) = -1, or
# stress(0, 0) = 7
# stress(1, 1) = -3
# stress(2, 2) = -5

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-7*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-4E-7*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-5E-7*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
[]

[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningConstant
    value = -1
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
    use_custom_returnMap = false
    use_custom_cto = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mean_cap]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = cap
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/misc/test/tests/dynamic_loading/dynamic_load_multiapp/misc_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    positions = '0.5 0.5 0'
    type = TransientMultiApp
    input_files = 'phase_field_slave.i'

    # Here we'll attempt to load a different module that's not compiled into this module
    app_type = PhaseFieldApp

    # Here we set an input file specific relative library path instead of using MOOSE_LIBRARY_PATH
    library_path = '../../../../../phase_field/lib'
  [../]
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test4nns.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_method = nodal_normal_based
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test4nns_out
  exodus = true
[]

[NodalNormals]
  boundary = 11
  corner_boundary = 20
[]

test/tests/functions/linear_combination_function/lcf1.i

# LinearCombinationFunction function test
# See [Functions] block for a description of the tests

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 2
  nx = 10
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./the_linear_combo]
  [../]
[]

[AuxKernels]
  [./the_linear_combo]
    type = FunctionAux
    variable = the_linear_combo
    function = the_linear_combo
  [../]
[]


[Functions]
  [./xtimes]
    type = ParsedFunction
    value = 1.1*x
  [../]

  [./twoxplus1]
    type = ParsedFunction
    value = 2*x+1
  [../]

  [./xsquared]
    type = ParsedFunction
    value = (x-2)*x
  [../]

  [./tover2]
    type = ParsedFunction
    value = 0.5*t
  [../]

  [./the_linear_combo]
    type = LinearCombinationFunction
    functions = 'xtimes twoxplus1 xsquared tover2'
    w = '3 -1.2 0.4 3'
  [../]

  [./should_be_answer]
    type = ParsedFunction
    value = 3*1.1*x-1.2*(2*x+1)+0.4*(x-2)*x+3*0.5*t
  [../]
[]

[Postprocessors]
  [./should_be_zero]
    type = NodalL2Error
    function = should_be_answer
    variable = the_linear_combo
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = lcf1
  hide = dummy
  exodus = false
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto22.i

# MeanCapTC with tensile failure

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 10
    value_residual = 1
    internal_limit = 10
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = -10
    value_residual = -1
    internal_limit = 9
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-11
    internal_constraint_tolerance = 1E-9
    use_custom_cto = true
    use_custom_returnMap = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7 1'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6 5 4  5 7 2  4 2 2'
    eigenstrain_name = ini_stress
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-11
    plastic_models = cap
    tangent_operator = nonlinear
    min_stepsize = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/multiapps/multilevel/time_dt_from_master_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 100
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_file = true
  [../]
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0 0.5 0.5 0'
    input_files = time_dt_from_master_subsub.i
  [../]
[]

modules/tensor_mechanics/test/tests/static_deformations/cosserat_glide.i

# Example taken from Appendix A of
# S Forest "Mechanics of Cosserat media An introduction".  Available from http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.154.4476&rep=rep1&type=pdf
#
# Analytically, the displacements are
# wc_z = B sinh(w_e y)
# disp_x = (2 mu_c B / w_e / (mu + mu_c)) (1 - cosh(w_e y))
# with w_e^2 = 2 mu mu_c / be / (mu + mu_c)
# and B = arbitrary integration constant
#
# Also, the only nonzero stresses are
# m_zy = 2 B be w_e cosh(w_e y)
# si_yx = -4 mu mu_c/(mu + mu_c) B sinh(w_e y)
#
# MOOSE gives these stress components correctly.
# However, it also gives a seemingly non-zero si_xy
# component.  Upon increasing the resolution of the
# mesh (ny=10000, for example), the stress components
# are seen to limit correctly to the above forumlae
#
# I use mu = 2, mu_c = 3, be = 0.6, so w_e = 2
# Also i use B = 1, so at y = 1
# wc_z = 3.626860407847
# disp_x = -1.65731741465
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 100
  ymax = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./z_couple]
    type = StressDivergenceTensors
    variable = wc_z
    displacements = 'wc_x wc_y wc_z'
    component = 2
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
  [./z_moment]
    type = MomentBalancing
    variable = wc_z
    component = 2
  [../]
[]

[BCs]
  # zmin is called back
  # zmax is called front
  # ymin is called bottom
  # ymax is called top
  # xmin is called left
  # xmax is called right
  [./disp_x_zero_at_y_zero]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value = 0
  [../]
  [./disp_x_fixed_at_y_max]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value = -1.65731741465
  [../]
  [./no_dispy]
    type = DirichletBC
    variable = disp_y
    boundary = 'back front bottom top left right'
    value = 0
  [../]
  [./no_dispz]
    type = DirichletBC
    variable = disp_z
    boundary = 'back front bottom top left right'
    value = 0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = 'back front bottom top left right'
    value = 0
  [../]
  [./no_wc_y]
    type = DirichletBC
    variable = wc_y
    boundary = 'back front bottom top left right'
    value = 0
  [../]
  [./wc_z_zero_at_y_zero]
    type = DirichletBC
    variable = wc_z
    boundary = bottom
    value = 0
  [../]
  [./wc_z_fixed_at_y_max]
    type = DirichletBC
    variable = wc_z
    boundary = top
    value = 3.626860407847
  [../]
[]

[AuxVariables]
  [./stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeCosseratElasticityTensor
    B_ijkl = '1.1 0.6 0.6' # In Forest notation this is alpha=1.1 (this is unimportant), beta=gamma=0.6.
    fill_method_bending = 'general_isotropic'
    E_ijkl = '1 2 3' # In Forest notation this is lambda=1 (this is unimportant), mu=2, mu_c=3
    fill_method = 'general_isotropic'
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[VectorPostprocessors]
  [./soln]
    type = LineValueSampler
    sort_by = y
    variable = 'disp_x wc_z stress_yx couple_stress_zy'
    start_point = '0 0 0'
    end_point = '0 1 0'
    num_points = 11
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol'
    petsc_options_value = 'gmres asm lu 1E-10 1E-14 10 1E-15 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = cosserat_glide_out
  exodus = true
  csv = true
[]

modules/combined/test/tests/solid_mechanics/Wave_1_D/Newmark_time_integration/sm/wave_bc_1d_sm.i

# Wave propogation in 1-D using Newmark time integration
#
# The test is for an 1-D bar element of length 4m  fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the other end.
# beta and gamma are Newmark time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel +  K*disp = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# This equation is equivalent to:
#
# density*accel + Div Stress= 0
#
# The first term on the left is evaluated using the Inertial force kernel
# The last term on the left is evaluated using StressDivergenceTensors
#
# The displacement at the second, third and fourth node at t = 0.1 are
# -8.021501116638234119e-02, 2.073994362053969628e-02 and  -5.045094181261772920e-03, respectively
[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = false
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
[]

[SolidMechanics]
 [./solid]
   disp_x = disp_x
   disp_y = disp_y
   disp_z = disp_z
   alpha = 0.0
   zeta = 0.0
 [../]
[]
[Kernels]
 [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.3025
    gamma = 0.6
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.3025
    gamma = 0.6
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.3025
    gamma = 0.6
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.6
    execute_on = timestep_end
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
   type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
    [./bottom_x]
      type = DirichletBC
      variable = disp_x
      boundary = bottom
      value=0.0
    [../]
    [./bottom_z]
      type = DirichletBC
      variable = disp_z
      boundary = bottom
      value=0.0
    [../]
    [./bottom_y]
      type = FunctionDirichletBC
      variable = disp_y
      boundary = bottom
      function = displacement_bc
    [../]
[]

[Materials]
  [./constant]
    type = Elastic
     block = 0
     disp_x = disp_x
     disp_y = disp_y
     disp_z = disp_z
     youngs_modulus = 1.0
     poissons_ratio = 0.0
     thermal_expansion = 0.0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1'
  [../]

[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 6.0
  dtmax = 0.1
  dtmin = 0.1
  l_tol = 1e-12
  nl_rel_tol = 1e-12
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.001 1 0.001 0.0 0.0'
    scale_factor = 7750
  [../]
  [./displacement_ic]
    type = PiecewiseLinear
    axis = y
    x = '0.0 0.3 0.4 0.5 0.6 0.7 1.0'
    y = '0.0 0.0 0.0001 1.0 0.0001 0.0 0.0'
    scale_factor = 0.1
  [../]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
    [./disp_1]
       type = NodalVariableValue
       nodeid = 1
       variable = disp_y
     [../]
    [./disp_2]
       type = NodalVariableValue
       nodeid = 3
       variable = disp_y
     [../]
    [./disp_3]
       type = NodalVariableValue
       nodeid = 10
       variable = disp_y
     [../]
    [./disp_4]
       type = NodalVariableValue
       nodeid = 14
       variable = disp_y
     [../]
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

test/tests/outputs/oversample/adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t*t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 1
  solve_type = PJFNK
[]

[Adaptivity]
  steps = 1
  marker = box
  max_h_level = 2
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = do_nothing
      type = BoxMarker
    [../]
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  [./oversample]
    type = Exodus
    refinements = 2
    file_base = adapt_out_oversample
    execute_on = 'initial timestep_end'
  [../]
[]

modules/combined/test/tests/reference_residual/reference_residual_sm.i

[Mesh]
  type = GeneratedMesh
  displacements = 'disp_x disp_y disp_z'
  dim = 3
  nx = 4
  ny = 4
  nz = 4
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./saved_t]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
    save_in = saved_t
    extra_vector_tags = 'ref'
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 1 1'
    scale_factor = 0.1
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]

  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value = 0.0
  [../]

  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pull
  [../]

  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value = 0.0
  [../]

  [./bottom_temp]
    type = DirichletBC
    variable = temp
    boundary = bottom
    value = 10.0
  [../]

  [./top_temp]
    type = DirichletBC
    variable = temp
    boundary = top
    value = 20.0
  [../]
[]

[Materials]
  [./constant]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    youngs_modulus = 1.0
    poissons_ratio = .3
    thermal_expansion = 1e-5
    increment_calculation = Eigen
  [../]

  [./heat1]
    type = HeatConductionMaterial
    block = 0
    specific_heat = 1.0
    thermal_conductivity = 1e-3 #Tuned to give temperature reference resid close to that of solidmech
  [../]

  [./density]
    type = Density
    block = 0
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10

  l_tol = 1e-3
  l_max_its = 100

  dt = 1.0
  end_time = 2.0
[]

[Postprocessors]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./ref_resid_z]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_z
  [../]
  [./ref_resid_t]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_t
  [../]
  [./nonlinear_its]
    type = NumNonlinearIterations
  []
[]

[Outputs]
  exodus = true
[]

test/tests/executioners/transient_sync_time/transient_sync_time_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./bc_func]
    type = ParsedFunction
    value = sin(pi*0.1*x*t)
  [../]

  # Laplacian of the function above
  [./interior_func]
    type = ParsedFunction
    value = 0.01*pi*pi*t*t*sin(0.1*pi*x*t)
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = BodyForce
    variable = u
    function = interior_func
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = '0 1 2 3'
    function = bc_func
  [../]
[]

[Executioner]
  type = Transient

  dt = 1
  start_time = 0
  end_time = 40
  num_steps = 1000
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out
  csv = true
  exodus = true
  sync_times = '10.5 20 30.5'
[]

modules/stochastic_tools/examples/batch/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 10
  nz = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = ADDiffusion
    variable = u
  []
  [time]
    type = ADTimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Postprocessors]
  [average]
    type = AverageNodalVariableValue
    variable = u
  []
[]

[Problem]
  type = FEProblem
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.25
  solve_type = NEWTON
[]

[Controls]
  [receiver]
    type = SamplerReceiver
  []
[]

[Outputs]
[]

modules/phase_field/test/tests/SplitCH/split_math_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  xmin = 0.0
  xmax = 30.0
  ymin = 0.0
  ymax = 30.0
  elem_type = QUAD4
[]

[Variables]

  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = CrossIC
      x1 = 0.0
      x2 = 30.0
      y1 = 0.0
      y2 = 30.0
    [../]
  [../]

  [./w]
    order = FIRST
    family = LAGRANGE

  [../]


[]

[Preconditioning]
active = 'SMP'
  [./PBP]
   type = PBP
   solve_order = 'w c'
   preconditioner = 'AMG ASM'
   off_diag_row = 'c '
   off_diag_column = 'w '
  [../]

  [./SMP]
   type = SMP
   coupled_groups = 'c,w'
  [../]
[]

[Kernels]

  [./cres]
    type = SplitCHMath
    variable = c
    kappa_name = kappa_c
    w = w
  [../]

  [./wres]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]

  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]

[]

[BCs]
  [./Periodic]
    [./top_bottom]
      primary = 0
      secondary = 2
      translation = '0 30.0 0'
    [../]

    [./left_right]
      primary = 1
      secondary = 3
      translation = '-30.0 0 0'
    [../]
  [../]
[]

[Materials]

  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 2.0'
    block = 0
  [../]
[]

[Executioner]
   type = Transient
   scheme = 'BDF2'
   #petsc_options = '-snes_mf'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



   petsc_options_iname = '-pc_type'
   petsc_options_value = 'lu'

  l_max_its = 30
  l_tol = 1.0e-3

  nl_max_its = 50
  nl_rel_tol = 1.0e-10

  dt = 10.0
  num_steps = 2
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/phase_field/test/tests/initial_conditions/IsolatedBoundingBoxIC_3D.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  xmin = 0
  xmax = 40
  ny = 10
  ymin = 0
  ymax = 30
  nz = 10
  zmin = 0
  zmax = 40
[]

[Problem]
  solve = false
[]

[Variables]
  [./c]
  [../]
[]

[ICs]
  [./c]
    type = IsolatedBoundingBoxIC
    variable = c
    smaller_coordinate_corners = '5 5 5 14 14 14 30 23 30'
    larger_coordinate_corners = '10 9 10 20 19 20 35 27 35'
    inside = '0.2 0.5 0.8'
    outside = 1
    int_width = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       ilu            nonzero'
  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-11

  num_steps = 1
  dt = 1e-5
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_postprocessor_interpolation_transfer/quad_sub1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef= 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./pp]
    type = Receiver
    default = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/check_error/sub2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/phase_field/examples/grain_growth/grain_growth_3D.i

# This simulation predicts GB migration of a 2D copper polycrystal with 100 grains represented with 18 order parameters
# Mesh adaptivity and time step adaptivity are used
# An AuxVariable is used to calculate the grain boundary locations
# Postprocessors are used to record time step and the number of grains

[Mesh]
  # Mesh block.  Meshes can be read in or automatically generated
  type = GeneratedMesh
  dim = 3 # Problem dimension
  nx = 10 # Number of elements in the x-direction
  ny = 10 # Number of elements in the y-direction
  nz = 10
  xmin = 0    # minimum x-coordinate of the mesh
  xmax = 1000 # maximum x-coordinate of the mesh
  ymin = 0    # minimum y-coordinate of the mesh
  ymax = 1000 # maximum y-coordinate of the mesh
  zmin = 0
  zmax = 1000
  uniform_refine = 1 # Initial uniform refinement of the mesh

  parallel_type = distributed
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = 15 # Number of order parameters used
  var_name_base = gr # Base name of grains
  order = CONSTANT
  family = MONOMIAL
[]

[Variables]
  # Variable block, where all variables in the simulation are declared
  [./PolycrystalVariables]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    grain_num = 25 # Number of grains
    rand_seed = 10
    coloring_algorithm = jp
  [../]
  [./grain_tracker]
    type = GrainTracker
    threshold = 0.2
    connecting_threshold = 0.08
    compute_halo_maps = true # Only necessary for displaying HALOS
    polycrystal_ic_uo = voronoi
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  # Dependent variables
  [./bnds]
    # Variable used to visualize the grain boundaries in the simulation
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
  [../]

  [./var_indices]
  [../]

  [./ghost_regions]
  [../]

  [./halos]
  [../]

  [./halo0]
  [../]

  [./halo1]
  [../]

  [./halo2]
  [../]

  [./halo3]
  [../]

  [./halo4]
  [../]

  [./halo5]
  [../]

  [./halo6]
  [../]

  [./halo7]
  [../]

  [./halo8]
  [../]

  [./halo9]
  [../]

  [./halo10]
  [../]

  [./halo11]
  [../]

  [./halo12]
  [../]

  [./halo13]
  [../]

  [./halo14]
  [../]

  [./proc]
  [../]
[]

[Kernels]
  # Kernel block, where the kernels defining the residual equations are set up.
  [./PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  [../]
[]

[AuxKernels]
  # AuxKernel block, defining the equations used to calculate the auxvars
  [./bnds_aux]
    # AuxKernel that calculates the GB term
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
    execute_on = 'initial timestep_end'
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
    execute_on = 'initial timestep_end'
  [../]
  [./ghosted_entities]
    type = FeatureFloodCountAux
    variable = ghost_regions
    flood_counter = grain_tracker
    field_display = GHOSTED_ENTITIES
    execute_on = 'initial timestep_end'
  [../]
  [./halos]
    type = FeatureFloodCountAux
    variable = halos
    flood_counter = voronoi
    field_display = HALOS
    execute_on = 'initial timestep_end'
  [../]
  [./halo0]
    type = FeatureFloodCountAux
    variable = halo0
    map_index = 0
    field_display = HALOS
    flood_counter = grain_tracker
    execute_on = 'initial timestep_end'
  [../]
  [./halo1]
    type = FeatureFloodCountAux
    variable = halo1
    map_index = 1
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo2]
    type = FeatureFloodCountAux
    variable = halo2
    map_index = 2
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo3]
    type = FeatureFloodCountAux
    variable = halo3
    map_index = 3
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo4]
    type = FeatureFloodCountAux
    variable = halo4
    map_index = 4
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo5]
    type = FeatureFloodCountAux
    variable = halo5
    map_index = 5
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo6]
    type = FeatureFloodCountAux
    variable = halo6
    map_index = 6
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo7]
    type = FeatureFloodCountAux
    variable = halo7
    map_index = 7
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo8]
    type = FeatureFloodCountAux
    variable = halo8
    map_index = 8
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo9]
    type = FeatureFloodCountAux
    variable = halo9
    map_index = 9
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo10]
    type = FeatureFloodCountAux
    variable = halo10
    map_index = 10
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo11]
    type = FeatureFloodCountAux
    variable = halo11
    map_index = 11
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo12]
    type = FeatureFloodCountAux
    variable = halo12
    map_index = 12
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo13]
    type = FeatureFloodCountAux
    variable = halo13
    map_index = 13
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./halo14]
    type = FeatureFloodCountAux
    variable = halo14
    map_index = 14
    field_display = HALOS
    flood_counter = grain_tracker
  [../]
  [./proc]
    type = ProcessorIDAux
    variable = proc
    execute_on = 'initial timestep_end'
  [../]

[]

[Materials]
  [./CuGrGr]
    # Material properties
    type = GBEvolution
    T = 450 # Constant temperature of the simulation (for mobility calculation)
    wGB = 125 # Width of the diffuse GB
    GBmob0 = 2.5e-6 #m^4(Js) for copper from Schoenfelder1997
    Q = 0.23 #eV for copper from Schoenfelder1997
    GBenergy = 0.708 #J/m^2 from Schoenfelder1997
  [../]
[]

[Postprocessors]
  # Scalar postprocessors
  [./dt]
    # Outputs the current time step
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient # Type of executioner, here it is transient with an adaptive time step
  scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  # Uses newton iteration to solve the problem.
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'asm'

  l_max_its = 30 # Max number of linear iterations
  l_tol = 1e-4 # Relative tolerance for linear solves
  nl_max_its = 40 # Max number of nonlinear iterations
  nl_rel_tol = 1e-10 # Absolute tolerance for nonlienar solves

  start_time = 0.0
  end_time = 4000

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 25 # Initial time step.  In this simulation it changes.
    optimal_iterations = 6 # Time step will adapt to maintain this number of nonlinear iterations
  [../]

#  [./Adaptivity]
#    # Block that turns on mesh adaptivity. Note that mesh will never coarsen beyond initial mesh (before uniform refinement)
##    initial_adaptivity = 2 # Number of times mesh is adapted to initial condition
#    refine_fraction = 0.6 # Fraction of high error that will be refined
#    coarsen_fraction = 0.1 # Fraction of low error that will coarsened
#    max_h_level = 3 # Max number of refinements used, starting from initial mesh (before uniform refinement)
#  [../]
[]

[Outputs]
  exodus = true
  csv = true
  [./perf_graph]
    type = PerfGraphOutput
    execute_on = 'initial final'  # Default is "final"
    level = 2                     # Default is 1
  [../]
[]

modules/tensor_mechanics/test/tests/ad_1D_spherical/finiteStrain_1DSphere_hollow.i

# This simulation models the mechanics solution for a hollow sphere under
# pressure, applied on the outer surfaces, using 1D spherical symmetry
# assumpitions.  The inner radius of the sphere, r = 4mm, is pinned to prevent
# rigid body movement of the sphere.
#
# From Bower (Applied Mechanics of Solids, 2008, available online at
# solidmechanics.org/text/Chapter4_1/Chapter4_1.htm), and applying the outer
# pressure and pinned displacement boundary conditions set in this simulation,
# the radial displacement is given by:
#
# u(r) = \frac{P(1 + v)(1 - 2v)b^3}{E(b^3(1 + v) + 2a^3(1-2v))} * (\frac{a^3}{r^2} - r)
#
# where P is the applied pressure, b is the outer radius, a is the inner radius,
# v is Poisson's ration, E is Young's Modulus, and r is the radial position.
#
# The radial stress is given by:
#
# S(r) = \frac{Pb^3}{b^3(1 + v) + 2a^3(1 - 2v)} * (\frac{2a^3}{r^3}(2v - 1) - (1 + v))
#
# The test assumes an inner radius of 4mm, and outer radius of 9 mm,
# zero displacement at r = 4mm, and an applied outer pressure of 2MPa.
# The radial stress is largest in the inner most element and, at an assumed
# mid element coordinate of 4.5mm, is equal to -2.545MPa.
[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 4
  xmax = 9
  nx = 5
[]

[GlobalParams]
  displacements = 'disp_r'
[]

[Problem]
  coord_type = RSPHERICAL
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    use_automatic_differentiation = true
  [../]
[]

[AuxVariables]
  [./stress_rr]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./stress_rr]
    type = ElementAverageValue
    variable = stress_rr
  [../]
[]

[AuxKernels]
  [./stress_rr]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_rr
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./innerDisp]
    type = ADDirichletBC
    boundary = left
    variable = disp_r
    value = 0.0
  [../]
  [./outerPressure]
    type = ADPressure
    boundary = right
    variable = disp_r
    component = 0
    constant = 2
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.345
    youngs_modulus = 1e4
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none


# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-8

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 0.25
  dtmin = 0.0001
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mean_cap_TC/small_deform7.i

# apply nonuniform stretch in x, y and z directions using
# Lame lambda = 0.7E7, Lame mu = 1.0E7,
# trial_stress(0, 0) = 2.9
# trial_stress(1, 1) = 10.9
# trial_stress(2, 2) = 14.9
# With tensile_strength = 2, decaying to zero at internal parameter = 4E-7
# via a Cubic, the algorithm should return to:
# internal parameter = 2.26829E-7
# trace(stress) = 0.799989 = tensile_strength
# stress(0, 0) = -6.4
# stress(1, 1) = 1.6
# stress(2, 2) = 5.6
# THEN apply a nonuniform compression in x, y, and z so that
# trial_stress(0, 0)
# With compressive_strength = -1, decaying to -0.5 at internal parameter 1E-8
# via a Cubic, the algorithm should return to
# trial_stress(0, 0) = -3.1
# trial_stress(1, 1) = -3.1
# trial_stress(2, 2) = 2.9
# the algorithm should return to trace(stress) = -0.5 = compressive_strength
# stress(0, 0) = -2.1667
# stress(1, 1) = -2.1667
# stress(2, 2) = 3.8333
# and internal parameter = 2.0406E-7

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = 'if(t<1.5,-1E-7*x,1E-7*x)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = 'if(t<1.5,3E-7*y,1E-7*y)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = 'if(t<1.5,5E-7*z,4E-7*z)'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./intnl]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 2
    value_residual = 0
    internal_limit = 4E-7
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = -1
    value_residual = -0.5
    internal_limit = 1E-8
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
    use_custom_returnMap = true
    use_custom_cto = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mean_cap]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-11
    plastic_models = cap
  [../]
[]


[Executioner]
  end_time = 2
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform7
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/richards/test/tests/excav/ex01.i

###########################################
#                                         #
#   THIS EXAMPLE CONTAINS AN EXCAVATION   #
#                                         #
###########################################


# Easiest way of figuring out what's happening:
# Run this example, load into paraview, take
# a slice through (0,0,0) with normal (0,0,1),
# colour by pressure and play the animation.


# This mesh has an interior sideset called excav_bdy
[Mesh]
  type = FileMesh
  file = ex01_input.e
[]



# This is a boundary condition acting on excav_bdy
# All it does is to set the pressure to p_excav=0
# at places on excav_bdy wherever excav_fcn tells it to.
[BCs]
  [./excav_bdy]
    type = RichardsExcav
    boundary = excav_bdy
    p_excav = 0.0
    variable = pressure
    excav_geom_function = excav_fcn
  [../]
[]



[Functions]
# excav_fcn controls where to set pressure=p_excav
# You supply start and end positions and times and
# by a linear interpolation these define the position
# of the coal face at all times
  [./excav_fcn]
    type = RichardsExcavGeom
    start_posn = '0 -500 0'
    start_time = 0
    end_posn = '0 -300 0'
    end_time = 6E6
    active_length = 1E4
  [../]

# mass_bal_fcn calculates the mass balance
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((mi-fout-mf)/2/(mi+mf))
    vars = 'mi mf fout'
    vals = 'mass_init mass_final flux_out'
  [../]

# initial pressure - unimportant in this example
  [./initial_pressure]
    type = ParsedFunction
    value = -10000*(z-100)
  [../]
[]




# following is needed by postprocessors, kernels, etc
# unimportant in this example
[GlobalParams]
  richardsVarNames_UO = PPNames
[]




# following does the calculation of relevant
# masses and mass-flux to the excavation
[Postprocessors]

# note that this is calculated at beginning of timestep
  [./mass_init]
    type = RichardsMass
    variable = pressure
    execute_on = 'initial timestep_begin'
  [../]

# note this is calculated at end of timestep
  [./mass_final]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

# this is what calculates the mass flux to the excavation
# it is calculating it for boundary=excav_bdy, and the
# excavation time-dependence is set through the excav_fcn
  [./flux_out]
    type = RichardsExcavFlow
    boundary = excav_bdy
    variable = pressure
    excav_geom_function = excav_fcn
  [../]

# mass_bal just outputs the result to screen
  [./mass_bal]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
  [../]
[]




######################################
#                                    #
#  THE FOLLOWING STUFF IS STANDARD   #
#                                    #
######################################


[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E+2
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = '1 2 3 4'
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 -10'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-13 1E-14 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 6E6
  dt = 3E6
  solve_type = NEWTON
[]

[Outputs]
  file_base = ex01
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/static_deformations/beam_cosserat_01.i

# Beam bending.  One end is clamped and the other end is subjected to
# a surface traction.
# The joint normal and shear stiffnesses are set very large, so
# that this situation should be identical to the standard (non-Cosserat)
# isotropic elasticity case.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 40
  xmax = 10
  ny = 1
  nz = 4
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  # zmin is called back
  # zmax is called front
  # ymin is called bottom
  # ymax is called top
  # xmin is called left
  # xmax is called right
  [./no_dispy]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom top'
    value = 0.0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = 'bottom top back front left right'
    value = 0.0
  [../]
  [./clamp_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./clamp_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./end_traction]
    type = VectorNeumannBC
    variable = disp_z
    vector_value = '-2E-4 0 0'
    boundary = right
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[VectorPostprocessors]
  [./soln]
    type = LineValueSampler
    sort_by = x
    variable = 'disp_x disp_z stress_xx stress_xz stress_zx stress_zz wc_x wc_y  couple_stress_xx couple_stress_xz couple_stress_zx couple_stress_zz'
    start_point = '0 0 0.5'
    end_point = '10 0 0.5'
    num_points = 11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1.2
    poisson = 0.3
    layer_thickness = 1
    joint_normal_stiffness = 1E16
    joint_shear_stiffness = 1E16
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol -sub_pc_factor_shift_type'
    petsc_options_value = 'gmres asm lu 1E-10 1E-14 10 1E-15 1E-10 NONZERO'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = beam_cosserat_01
  csv = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_viscoplasticity_stress_update/lps_dual.i

# This test provides an example of combining two LPS viscoplasticity models with different stress
# exponents.

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmax = 0.002
  ymax = 0.002
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  add_variables = true
  generate_output = 'strain_xx strain_yy strain_xy hydrostatic_stress vonmises_stress'
  use_automatic_differentiation = true
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0 0.1'
    y = '0 1e-5'
  [../]
  [./tot_effective_viscoplasticity]
    type = ParsedFunction
    vals = 'lps_1_eff_creep_strain lps_3_eff_creep_strain'
    vars = 'lps_1_eff_creep_strain lps_3_eff_creep_strain'
    value = 'lps_1_eff_creep_strain+lps_3_eff_creep_strain'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ADComputeMultiplePorousInelasticStress
    inelastic_models = 'one two'
    initial_porosity = 0.1
    outputs = all
  [../]

  [./one]
    type = ADViscoplasticityStressUpdate
    coefficient = 'coef_3'
    power = 3
    base_name = 'lps_1'
    outputs = all
    relative_tolerance = 1e-11
  [../]
  [./two]
    type = ADViscoplasticityStressUpdate
    coefficient = 1e-10
    power = 1
    base_name = 'lps_3'
    outputs = all
    relative_tolerance = 1e-11
  [../]
  [./coef]
    type = ParsedMaterial
    f_name = coef_3
    # Example of creep power law
    function = '0.5e-18 * exp(-4e4 / 1.987 / 1200)'
  [../]
[]

[BCs]
  [./no_disp_x]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_disp_y]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./pull_disp_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pull
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 0.01
  end_time = 0.12
[]

[Postprocessors]
  [./disp_x]
    type = SideAverageValue
    variable = disp_x
    boundary = right
  [../]
  [./disp_y]
    type = SideAverageValue
    variable = disp_y
    boundary = top
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
  [../]
  [./dt]
    type = TimestepSize
  [../]
  [./num_lin]
    type = NumLinearIterations
    outputs = console
  [../]
  [./num_nonlin]
    type = NumNonlinearIterations
    outputs = console
  [../]
  [./lps_1_eff_creep_strain]
    type = ElementAverageValue
    variable = lps_1_effective_viscoplasticity
  [../]
  [./lps_3_eff_creep_strain]
    type = ElementAverageValue
    variable = lps_3_effective_viscoplasticity
  [../]
  [./lps_1_gauge_stress]
    type = ElementAverageValue
    variable = lps_1_gauge_stress
  [../]
  [./lps_3_gauge_stress]
    type = ElementAverageValue
    variable = lps_3_gauge_stress
  [../]
  [./eff_creep_strain_tot]
    type = FunctionValuePostprocessor
    function = tot_effective_viscoplasticity
  [../]
  [./porosity]
    type = ElementAverageValue
    variable = porosity
  [../]
[]

[Outputs]
  csv = true
[]

modules/phase_field/test/tests/phase_field_crystal/PFC_IC/PFC_IC_BCC_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 100
  xmax = 15
  ymax = 15
[]

[Variables]
  [./rho]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = rho
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  exodus = true
[]

[ICs]
  [./rho_IC]
    y2 = 12.5
    lc = 5
    y1 = 2.5
    x2 = 12.5
    crystal_structure = BCC
    variable = rho
    x1 = 2.5
    type = PFCFreezingIC
    min = .3
    max = .7
  [../]
[]

python/peacock/tests/common/transient.i

###########################################################
# This is a simple test with a time-dependent problem
# demonstrating the use of a "Transient" Executioner.
#
# @Requirement F1.10
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./dt]
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'

  # Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_transient
  exodus = true
[]

modules/combined/test/tests/poro_mechanics/pp_generation_unconfined_action.i

# This is identical to pp_generation_unconfined.i but it uses
# and action instead of explicitly writing all the Kernels out
#
# A sample is constrained on all sides, except its top
# and its boundaries are
# also impermeable.  Fluid is pumped into the sample via a
# volumetric source (ie m^3/second per cubic meter), and the
# rise in the top surface, porepressure, and stress are observed.
#
# Source = s  (units = 1/second)
#
# Expect:
# strain_zz = disp_z = BiotCoefficient*BiotModulus*s*t/((bulk + 4*shear/3) + BiotCoefficient^2*BiotModulus)
# porepressure = BiotModulus*(s*t - BiotCoefficient*strain_zz)
# stress_xx = (bulk - 2*shear/3)*strain_zz   (remember this is effective stress)
# stress_xx = (bulk + 4*shear/3)*strain_zz   (remember this is effective stress)
#
# Parameters:
# Biot coefficient = 0.3
# Porosity = 0.1
# Bulk modulus = 2
# Shear modulus = 1.5
# fluid bulk modulus = 1/0.3 = 3.333333
# 1/Biot modulus = (1 - 0.3)*(0.3 - 0.1)/2 + 0.1*0.3 = 0.1. BiotModulus = 10
#
# s = 0.1
#
# Expect
# disp_z = 0.3*10*s*t/((2 + 4*1.5/3) + 0.3^2*10) = 0.612245*s*t
# porepressure = 10*(s*t - 0.3*0.612245*s*t) = 8.163265*s*t
# stress_xx = (2 - 2*1.5/3)*0.612245*s*t = 0.612245*s*t
# stress_zz = (2 + 4*shear/3)*0.612245*s*t = 2.44898*s*t


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back'
  [../]
[]


[Kernels]
  [./PoroMechanics]
  [../]
  [./poro_timederiv]
    type = PoroFullSatTimeDerivative
    variable = porepressure
  [../]
  [./source]
    type = BodyForce
    function = 0.1
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]



[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./poro_material]
    type = PoroFullSatMaterial
    porosity0 = 0.1
    biot_coefficient = 0.3
    solid_bulk_compliance = 0.5
    fluid_bulk_compliance = 0.3
    constant_porosity = true
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]

[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = pp_generation_unconfined_action
  [./csv]
    type = CSV
  [../]
[]

modules/phase_field/test/tests/TotalFreeEnergy/TotalFreeEnergy_2var_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1000
  zmin = 0
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 2
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./BicrystalCircleGrainIC]
      radius = 333.333
      x = 500
      y = 500
      int_width = 60
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./local_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./gr0dot]
    type = TimeDerivative
    variable = gr0
  [../]
  [./gr0bulk]
    type = AllenCahn
    variable = gr0
    f_name = F
    args = gr1
  [../]
  [./gr0int]
    type = ACInterface
    variable = gr0
    kappa_name = kappa_op
  [../]
  [./gr1dot]
    type = TimeDerivative
    variable = gr1
  [../]
  [./gr1bulk]
    type = AllenCahn
    variable = gr1
    f_name = F
    args = gr0
  [../]
  [./gr1int]
    type = ACInterface
    variable = gr1
    kappa_name = kappa_op
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
  [../]
  [./local_free_energy]
    type = TotalFreeEnergy
    variable = local_energy
    kappa_names = 'kappa_op kappa_op'
    interfacial_vars = 'gr0 gr1'
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 # m^4/(Js) from Schoenfelder 1997
    Q = 0.23 # Migration energy in eV
    GBenergy = 0.708 # GB energy in J/m^2
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    args = 'gr0 gr1'
    material_property_names = 'mu gamma_asymm'
    function = 'mu*( gr0^4/4.0 - gr0^2/2.0 + gr1^4/4.0 - gr1^2/2.0 + gamma_asymm*gr0^2*gr1^2) + 1.0/4.0'
    derivative_order = 2
    enable_jit = true
  [../]
[]

[Postprocessors]
  [./total_energy]
    type = ElementIntegralVariablePostprocessor
    variable = local_energy
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'
  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 30
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 7
  dt = 80.0
  [./Adaptivity]
    initial_adaptivity = 2
    refine_fraction = 0.8
    coarsen_fraction = 0.05
    max_h_level = 2
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  csv = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform_hard22.i

# Mohr-Coulomb only
# apply stretches in x direction and smaller stretches in the y direction
# to observe return to the MC plane
# This tests uses hardening of the friction and dilation angles.  The returned configuration
# should obey
# 0 = 0.5 * (Smax - Smin) + 0.5 * (Smax + Smin) * sin(phi) - C cos(phi)
# which allows inference of phi.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.4E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.17E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 6
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
[]

[Postprocessors]
  [./s_max]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_mid]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_min]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningCubic
    value_residual = 0.524 # 30deg
    value_0 = 0.174 # 10deg
    internal_limit = 4E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1E7
    poissons_ratio = 0.0
  [../]
  [./mc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_phi
    smoothing_tol = 0
    yield_function_tol = 1.0E-9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 9
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard22
  csv = true
[]

modules/phase_field/test/tests/SoretDiffusion/split_temp.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 60
  xmax = 500
  elem_type = EDGE
[]

[GlobalParams]
  polynomial_order = 8
[]

[Variables]
  [./c]
  [../]
  [./w]
    scaling = 1.0e2
  [../]
  [./T]
    initial_condition = 1000.0
    scaling = 1.0e5
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 125.0
    y1 = 0.0
    radius = 60.0
    invalue = 1.0
    outvalue = 0.1
    int_width = 100.0
    variable = c
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    kappa_name = kappa
    w = w
    f_name = F
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./w_res_soret]
    type = SoretDiffusion
    variable = w
    c = c
    T = T
    diff_name = D
    Q_name = Qstar
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./HtCond]
    type = MatDiffusion
    variable = T
    diffusivity = thermal_conductivity
  [../]
[]

[BCs]
  [./Left_T]
    type = DirichletBC
    variable = T
    boundary = left
    value = 1000.0
  [../]

  [./Right_T]
    type = DirichletBC
    variable = T
    boundary = right
    value = 1015.0
  [../]
[]

[Materials]
  [./Copper]
    type = PFParamsPolyFreeEnergy
    block = 0
    c = c
    T = T # K
    int_width = 60.0
    length_scale = 1.0e-9
    time_scale = 1.0e-9
    D0 = 3.1e-5 # m^2/s, from Brown1980
    Em = 0.71 # in eV, from Balluffi1978 Table 2
    Ef = 1.28 # in eV, from Balluffi1978 Table 2
    surface_energy = 0.708 # Total guess
  [../]
  [./thcond]
    type = ParsedMaterial
    block = 0
    args = 'c'
    function = 'if(c>0.7,1e-8,4e-8)'
    f_name = thermal_conductivity
    outputs = exodus
  [../]
  [./free_energy]
    type = PolynomialFreeEnergy
    block = 0
    c = c
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
   type = SMP
   full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'PJFNK'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 25
  nl_rel_tol = 1.0e-9

  num_steps = 60
  dt = 20.0
[]

[Outputs]
   exodus = true
[]

modules/tensor_mechanics/test/tests/generalized_plane_strain/generalized_plane_strain_ref_resid.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = square.e
[]

[Problem]
  type = ReferenceResidualProblem
  reference_vector = 'ref'
  extra_tag_vectors = 'ref'
  group_variables = 'disp_x disp_y'
[]

[Variables]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    displacements = 'disp_x disp_y'
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy strain_zz'
    planar_formulation = GENERALIZED_PLANE_STRAIN
    eigenstrain_names = eigenstrain
    scalar_out_of_plane_strain = scalar_strain_zz
    temperature = temp
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./saved_x]
    type = TagVectorAux
    variable = 'saved_x'
    vector_tag = 'ref'
    v = 'disp_x'
    execute_on = timestep_end
  [../]
  [./saved_y]
    type = TagVectorAux
    variable = 'saved_y'
    vector_tag = 'ref'
    execute_on = timestep_end
    v = 'disp_y'
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/single_var_constraint_2d/stationary_fluxjump.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.0'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0
    jump_flux = 1
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/jacobian/heat_advection02.i

# 2phase, unsaturated, heat advection
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./temp]
  [../]
  [./pgas]
  [../]
  [./pwater]
  [../]
[]

[ICs]
  [./pgas]
    type = RandomIC
    variable = pgas
    max = 1.0
    min = 0.0
  [../]
  [./pwater]
    type = RandomIC
    variable = pwater
    max = 0.0
    min = -1.0
  [../]
  [./temp]
    type = RandomIC
    variable = temp
    max = 1.0
    min = 0.0
  [../]
[]

[Kernels]
  [./dummy_pgas]
    type = Diffusion
    variable = pgas
  [../]
  [./dummy_pwater]
    type = Diffusion
    variable = pwater
  [../]
  [./heat_advection]
    type = PorousFlowHeatAdvection
    variable = temp
    gravity = '1 2 3'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pgas pwater'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
      cv = 1.1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.8
      density0 = 0.7
      thermal_expansion = 0
      viscosity = 1.3
      cv = 1.6
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = pgas
    capillary_pressure = pc
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
[]

[Preconditioning]
  active = check
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/chemical_reactions/test/tests/aqueous_equilibrium/1species_without_action.i

# Simple equilibrium reaction example.
# This simulation is identical to 1species.i, but explicitly includes the AuxVariables,
# AuxKernels, and Kernels that the action in 1species.i adds

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1e-2
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
      variable = a
    [../]
  [../]
[]

[AuxVariables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pa2]
  [../]
[]

[AuxKernels]
  [./pa2eq]
    type = AqueousEquilibriumRxnAux
    variable = pa2
    v = a
    sto_v = 2
    log_k = 1
  [../]
[]

[ICs]
  [./pressure]
    type = FunctionIC
    variable = pressure
    function = 2-x
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./a_conv]
    type = PrimaryConvection
    variable = a
    p = pressure
  [../]
  [./aeq]
    type = CoupledBEEquilibriumSub
    variable = a
    log_k = 1
    weight = 2
    sto_u = 2
  [../]
  [./adiff]
    type = CoupledDiffusionReactionSub
    variable = a
    log_k = 1
    weight = 2
    sto_u = 2
  [../]
  [./aconv]
    type = CoupledConvectionReactionSub
    variable = a
    log_k = 1
    weight = 2
    sto_u = 2
    p = pressure
  [../]
[]

[BCs]
  [./a_right]
    type = ChemicalOutFlowBC
    variable = a
    boundary = right
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-4 1e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-12
  start_time = 0.0
  end_time = 100
  dt = 10.0
[]

[Outputs]
  file_base = 1species_out
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

modules/phase_field/test/tests/grain_growth/constant_mobility.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmax = 1000
  ymax = 1000
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 2
[]

[GlobalParams]
  op_num = 4
  var_name_base = 'gr'
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 6
    grain_num = 4
    coloring_algorithm = bt
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'timestep_end'
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Moly_GB]
    type = GBEvolution
    time_scale = 1.0e-2
    GBMobility = 1.88e-14    # m^4/J*s
    T = '500'    # K
    wGB = 60    # nm
    GBenergy = 1.4
  [../]
[]

[Postprocessors]
  [./gr1area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 2
  dt = 4
[]

[Outputs]
  exodus = true
[]

modules/phase_field/examples/measure_interface_energy/1Dinterface_energy.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmax = 100
  xmin = 0
  elem_type = EDGE
[]

[AuxVariables]
  [./local_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./local_free_energy]
    type = TotalFreeEnergy
    variable = local_energy
    kappa_names = kappa_c
    interfacial_vars = c
  [../]
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    scaling = 1e1
    [./InitialCondition]
      type = RampIC
      variable = c
      value_left = 0
      value_right = 1
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]

[]

[Functions]
  [./Int_energy]
    type = ParsedFunction
    vals = 'total_solute Cleft Cright Fleft Fright volume'
    value = '((total_solute-Cleft*volume)/(Cright-Cleft))*Fright+(volume-(total_solute-Cleft*volume)/(Cright-Cleft))*Fleft'
    vars = 'total_solute Cleft Cright Fleft Fright volume'
  [../]
  [./Diff]
    type = ParsedFunction
    vals = 'total_free_energy total_no_int'
    vars = 'total_free_energy total_no_int'
    value = total_free_energy-total_no_int
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'kappa_c M'
    prop_values = '25      150'
  [../]
  [./Free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    function = 'c^2*(c-1)^2'
    args = c
    derivative_order = 2
  [../]
[]

[Postprocessors]
  # The total free energy of the simulation cell to observe the energy reduction.
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    variable = local_energy
  [../]

  # for testing we also monitor the total solute amount, which should be conserved,
  # gives Cavg in % for this problem.
  [./total_solute]
    type = ElementIntegralVariablePostprocessor
    variable = c
  [../]
  # Get simulation cell size (1D volume) from postprocessor
  [./volume]
    type = ElementIntegralMaterialProperty
    mat_prop = 1
  [../]
  # Find concentration in each phase using SideAverageValue
  [./Cleft]
    type = SideAverageValue
    boundary = left
    variable = c
  [../]
  [./Cright]
    type = SideAverageValue
    boundary = right
    variable = c
  [../]
  # Find local energy in each phase by checking boundaries
  [./Fleft]
    type = SideAverageValue
    boundary = left
    variable = local_energy
  [../]
  [./Fright]
    type = SideAverageValue
    boundary = right
    variable = local_energy
  [../]
  # Use concentrations and energies to find total free energy without any interface,
  # only applies once equilibrium is reached!!
  # Difference between energy with and without interface
  # gives interface energy per unit area.
  [./total_no_int]
    type = FunctionValuePostprocessor
    function = Int_energy
  [../]
  [./Energy_of_Interface]
    type = FunctionValuePostprocessor
    function = Diff
  [../]
[]

[Preconditioning]
  # This preconditioner makes sure the Jacobian Matrix is fully populated. Our
  # kernels compute all Jacobian matrix entries.
  # This allows us to use the Newton solver below.
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  # Automatic differentiation provides a _full_ Jacobian in this example
  # so we can safely use NEWTON for a fast solve
  solve_type = 'NEWTON'

  l_max_its = 15
  l_tol = 1.0e-6

  nl_max_its = 15
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-4

  start_time = 0.0
  # make sure that the result obtained for the interfacial free energy is fully converged
  end_time   = 40

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.5
  [../]
[]

[Outputs]
  gnuplot = true
  csv = true
  [./exodus]
    type = Exodus
    show = 'c local_energy'
    execute_on = 'failed initial nonlinear timestep_end final'
  [../]
  [./console]
    type = Console
    execute_on = 'FAILED INITIAL NONLINEAR TIMESTEP_END final'
  [../]
  perf_graph = true
[]

test/tests/executioners/executioner/transient.i

###########################################################
# This is a simple test with a time-dependent problem
# demonstrating the use of a "Transient" Executioner.
#
# @Requirement F1.10
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./dt]
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'
  solve_type = 'PJFNK'
  start_time = 0.0
  num_steps = 5
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_transient
  exodus = true
[]

test/tests/functions/image_function/shift_and_scale.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file_base = stack/test
    file_suffix = png
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    shift = -62735.0
    scale = 0.0001
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update1.i

# MC update version, with only Tensile with tensile strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Return to the stress_I = 1 plane

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 0 0  0 0 0  0 0 -2'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/kernels/mass_lumping/mass_lumping.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -1
  xmax = 1
  nx = 2
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = init_f
  [../]
[]

[Kernels]
  [./time_deriv]
    type = MassLumpedTimeDerivative
    variable = u
  [../]
  [./diff]
    type = FuncCoefDiffusion
    variable = u
    coef = diff_f
  [../]
[]

[Functions]
  [./init_f]
    type = ParsedFunction
    value = max(x,0) #(x>0)
  [../]
  [./diff_f]
    type = ParsedFunction
    value = max(x,0)
  [../]
[]


[Executioner]
  type = Transient
  end_time = 1
  solve_type = 'NEWTON'
[]

[Outputs]
  exodus = true
[]

test/tests/restart/restart_diffusion/exodus_refined_restart_2_test.i

[Mesh]
  file = exodus_refined_restart_1.e
  # Restart relies on the ExodusII_IO::copy_nodal_solution()
  # functionality, which only works with ReplicatedMesh.
  parallel_type = replicated
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
    initial_from_file_var = u
    initial_from_file_timestep = 2
  [../]
[]

[Kernels]
  active = 'bodyforce ie'

  [./bodyforce]
    type = BodyForce
    variable = u
    value = 10.0
  [../]

  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  active = 'left right'

  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 10
  dt = .1
[]

[Outputs]
  file_base = exodus_refined_restart_2
  exodus = true
[]

modules/combined/test/tests/simplest_contact/simplest_contact_test.i

[Mesh]
  file = simplest_contact.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  []
[]

[AuxKernels]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 2
    paired_boundary = 3
  [../]
[]

[Constraints]
  [./contact_x]
    type = MultiDContactConstraint
    variable = disp_x
    master_variable = disp_x
    component = 0
    slave = 2
    master = 3
    penalty = 1e6
  [../]

  [./contact_y]
    type = MultiDContactConstraint
    variable = disp_y
    master_variable = disp_y
    component = 1
    slave = 2
    master = 3
    penalty = 1e6
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.0001
  [../]

  [./right_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[] # BCs

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
[]  # Materials

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'


  line_search = 'none'
  nl_abs_tol = 1e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[] # Executioner

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Output

modules/xfem/test/tests/solid_mechanics_basic/square_branch_tri_2d.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = TRI3
[]

[UserObjects]
  [./line_seg_cut_uo0]
    type = LineSegmentCutUserObject
    cut_data = '-1.0000e-10   6.6340e-01   6.6340e-01  -1.0000e-10'
    time_start_cut = 0.0
    time_end_cut = 1.0
  [../]
  [./line_seg_cut_uo1]
    type = LineSegmentCutUserObject
    cut_data = '3.3120e-01   3.3200e-01   1.0001e+00   3.3200e-01'
    time_start_cut = 1.0
    time_end_cut = 2.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    planar_formulation = PLANE_STRAIN
    add_variables = true
  [../]
[]

[Functions]
  [./right_disp_x]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
  [./top_disp_y]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionDirichletBC
    boundary = 1
    variable = disp_x
    function = right_disp_x
  [../]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = top_disp_y
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.2
  num_steps = 5000
[]

[Outputs]
  file_base = square_branch_tri_2d_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/generalized_plane_strain_tm_contact/out_of_plane_pressure.i

# Tests for application of out-of-plane pressure in generalized plane strain.

[Mesh]
  type = GeneratedMesh
  nx = 2
  ny = 2
  dim = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./saved_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_zz]
    order = FIRST
    family = SCALAR
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./GeneralizedPlaneStrain]
      [./gps]
        displacements = 'disp_x disp_y'
        scalar_out_of_plane_strain = scalar_strain_zz
        out_of_plane_pressure = traction_function
        factor = 1e5
      [../]
    [../]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    displacements = 'disp_x disp_y'
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxScalarKernels]
  [./gps_ref_res]
    type = GeneralizedPlaneStrainReferenceResidual
    variable = saved_zz
    generalized_plane_strain = gps_GeneralizedPlaneStrainUserObject
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]

  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Functions]
  [./traction_function]
    type = PiecewiseLinear
    x = '0  2'
    y = '0  1'
  [../]
[]

[BCs]
  [./leftx]
    type = DirichletBC
    boundary = left
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./strain]
    type = ComputePlaneSmallStrain
    displacements = 'disp_x disp_y'
    scalar_out_of_plane_strain = scalar_strain_zz
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-4

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-11

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/poro/vol_expansion.i

# Apply an increasing porepressure, with zero mechanical forces,
# and observe the corresponding volumetric expansion
#
# P = t
# With the Biot coefficient being 2.0, the effective stresses should be
# stress_xx = stress_yy = stress_zz = 2t
# With bulk modulus = 1 then should have
# vol_strain = strain_xx + strain_yy + strain_zz = 2t.
# I use a single element lying 0<=x<=1, 0<=y<=1 and 0<=z<=1, and
# fix the left, bottom and back boundaries appropriately,
# so at the point x=y=z=1, the displacements should be
# disp_x = disp_y = disp_z = 2t/3 (small strain physics is used)
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./p]
  [../]
[]

[BCs]
  [./p]
    type = FunctionDirichletBC
    boundary = 'bottom top'
    variable = p
    function = t
  [../]
  [./xmin]
    type = DirichletBC
    boundary = left
    variable = disp_x
    value = 0
  [../]
  [./ymin]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0
  [../]
  [./zmin]
    type = DirichletBC
    boundary = back
    variable = disp_z
    value = 0
  [../]
[]

[Kernels]
  [./unimportant_p]
    type = Diffusion
    variable = p
  [../]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./poro_x]
    type = PoroMechanicsCoupling
    variable = disp_x
    porepressure = p
    component = 0
  [../]
  [./poro_y]
    type = PoroMechanicsCoupling
    variable = disp_y
    porepressure = p
    component = 1
  [../]
  [./poro_z]
    type = PoroMechanicsCoupling
    variable = disp_z
    porepressure = p
    component = 2
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Postprocessors]
  [./corner_x]
    type = PointValue
    point = '1 1 1'
    variable = disp_x
  [../]
  [./corner_y]
    type = PointValue
    point = '1 1 1'
    variable = disp_y
  [../]
  [./corner_z]
    type = PointValue
    point = '1 1 1'
    variable = disp_z
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    # bulk modulus = 1, poisson ratio = 0.2
    C_ijkl = '0.5 0.75'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./biot]
    type = GenericConstantMaterial
    prop_names = biot_coefficient
    prop_values = 2.0
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol'
    petsc_options_value = 'gmres bjacobi 1E-10 1E-10 10 1E-15 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  dt = 0.1
  end_time = 1
[]

[Outputs]
  file_base = vol_expansion
  exodus = true
[]

modules/tensor_mechanics/test/tests/j2_plasticity/small_deform1.i

# UserObject J2 test
# apply uniform stretch in x, y and z directions.
# no plasticity should be observed

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./j2]
    type = TensorMechanicsPlasticJ2
    yield_strength = str
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = j2
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform1
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/richards/test/tests/jacobian_2/jn04.i

# two phase
# unsaturated = true

# gravity = true
# supg = true
# transient = false

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardsfgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn04
  exodus = false
[]

modules/tensor_mechanics/test/tests/strain_energy_density/tot_model.i

# Single element test to check the strain energy density calculation

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 2
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -100
  [../]
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = SMALL
    add_variables = true
    incremental = false
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress strain_xx strain_yy strain_zz'
    planar_formulation = PLANE_STRAIN
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0.0
  [../]
  [./Pressure]
    [./top]
      boundary = 'top'
      function = rampConstantUp
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 30e+6
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeLinearElasticStress
  [../]
  [./strain_energy_density]
    type = StrainEnergyDensity
    incremental = false
  [../]
[]

[Executioner]
   type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 3e-7
   nl_rel_tol = 1e-12
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1
[]

[Postprocessors]
  [./epxx]
    type = ElementalVariableValue
    variable = strain_xx
    elementid = 0
  [../]
  [./epyy]
    type = ElementalVariableValue
    variable = strain_yy
    elementid = 0
  [../]
  [./epzz]
    type = ElementalVariableValue
    variable = strain_zz
    elementid = 0
  [../]
  [./sigxx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./sigyy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigzz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./SED]
    type = ElementAverageValue
    variable = SED
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/richards/test/tests/jacobian_2/jn_fu_06.i

# two phase
# unsaturated = true

# gravity = true
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn06
  exodus = false
[]

modules/tensor_mechanics/test/tests/beam/static/euler_finite_rot_z.i

# Large strain/large rotation cantilever beam test

# A 300 N point load is applied at the end of a 4 m long cantilever beam.
# Young's modulus (E) = 1e4
# Shear modulus (G) = 1e8
# Poisson's ratio (nu) = -0.99995
# shear coefficient (k) = 1.0
# Area (A) = 1.0
# Iy = Iz = 0.16

# The dimensionless parameter alpha = kAGL^2/EI = 1e6
# Since the value of alpha ia quite high, the beam behaves like
# a thin beam where shear effects are not significant.

# Beam deflection:
# small strain+rot = 3.998 m (exact 4.0)
# large strain + small rotation = -0.05 m in x and 3.74 m in z
# large rotations + small strain = -0.92 m in x and 2.38 m in z
# large rotations + large strain = -0.954 m in x and 2.37 m in z (exact -1.0 m in x and 2.4 m in z)

# References:
# K. E. Bisshopp and D.C. Drucker, Quaterly of Applied Mathematics, Vol 3, No. 3, 1945.

[Mesh]
  type = FileMesh
  file = beam_finite_rot_test_2.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = 1
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = 1
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = 1
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_z2]
    type = UserForcingFunctionNodalKernel
    variable = disp_z
    boundary = 2
    function = force
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 2.0  8.0'
    y = '0.0 300.0 300.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = 'none'
  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre     boomeramg     4'
  nl_max_its = 50
  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-7
  l_max_its = 50
  dt = 0.05
  end_time = 2.1
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1e4
    poissons_ratio = -0.99995
    shear_coefficient = 1.0
    block = 1
  [../]
  [./strain]
    type = ComputeFiniteBeamStrain
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 1.0
    Ay = 0.0
    Az = 0.0
    Iy = 0.16
    Iz = 0.16
    y_orientation = '0.0 1.0 0.0'
    large_strain = true
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 1
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_z
  [../]
  [./rot_z]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = rot_y
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/fromsub_displaced_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  displacements = 'disp_x disp_y'
  # Transferring data from a sub application is currently only
  # supported with a ReplicatedMesh
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./disp_x]
    initial_condition = -0.2
  [../]
  [./disp_y]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    use_displaced = true
  [../]
[]

modules/tensor_mechanics/test/tests/material_limit_time_step/mult_inelastic/no_inelastic_model_timestep_limit.i

# This is a basic test of the material time step computed by the
# ComputeMultipleInelasticStress model. If no inelastic models
# are defined, the material time step should be the maximum
# value representable by a real number.

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
[]

[AuxVariables]
  [damage_index]
    order = CONSTANT
    family = MONOMIAL
  []
[]

[Modules/TensorMechanics/Master]
  [all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_xx strain_xx'
  []
[]

[BCs]
  [symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  []
  [symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  []
  [symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  []
  [axial_load]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.01
  []
[]

[Materials]
  [stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = ''
  []
  [elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.2
    youngs_modulus = 10e9
  []
[]

[Postprocessors]
  [stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  []
  [strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  []
  [time_step_limit]
    type = MaterialTimeStepPostprocessor
  []
[]

[Executioner]
  type = Transient

  l_max_its  = 50
  l_tol      = 1e-8
  nl_max_its = 20
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-8

  dt = 0.1
  dtmin = 0.001
  end_time = 1.1
  [TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.1
    growth_factor = 2.0
    cutback_factor = 0.5
    timestep_limiting_postprocessor = time_step_limit
  []
[]

[Outputs]
  csv=true
[]

modules/richards/test/tests/sinks/s02.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.5
    al = 1 # same deal with PETSc constant state
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 2
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((mi-lfout-rfout-mf)/2/(mi+mf))
    vars = 'mi mf lfout rfout'
    vals = 'mass_init mass_fin left_flux_out right_flux_out'
  [../]
[]

[Postprocessors]
  [./mass_init]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]
  [./mass_fin]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]
  [./left_flux_out]
    type = RichardsHalfGaussianSinkFlux
    boundary = left
    variable = pressure
    centre = 1
    max = 2
    sd = 1
  [../]
  [./right_flux_out]
    type = RichardsHalfGaussianSinkFlux
    boundary = right
    variable = pressure
    centre = 1
    max = 2
    sd = 1
  [../]
  [./p0]
    type = PointValue
    point = '0 0 0'
    variable = pressure
  [../]
  [./mass_bal]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsHalfGaussianSink
    boundary = left
    variable = pressure
    centre = 1
    max = 2
    sd = 1
  [../]
  [./right_flux]
    type = RichardsHalfGaussianSink
    boundary = right
    variable = pressure
    centre = 1
    max = 2
    sd = 1
  [../]
[]

[Kernels]
  active = 'richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 4E-3
  end_time = 0.4
[]

[Outputs]
  file_base = s02
  csv = true
  execute_on = timestep_end
[]

modules/combined/test/tests/heat_convection/heat_convection_3d_test.i

# Test cases for convective boundary conditions.
# Input file for htc_3dtest1

# TKLarson
# 11/02/11
# Revision 0
#
# Goals of this test are:
#  1) show that the 'fluid' temperature for convective boundary condition
#    is behaving as expected/desired
#  2) show that expected results ensue from application of convective boundary conditions
# Convective boundary condition:
#  q = h*A*(Tw - Tf)
#  where
#    q - heat transfer rate (w)
#    h - heat transfer coefficient (w/m^2-K)
#    A - surface area (m^2)
#    Tw - surface temperature (K)
#    Tf - fluid temperature adjacent to the surface (K)
# The heat transfer coefficient (h) is input as a variable called 'rate'
# Tf is a two valued function specified by 'initial' and 'final' along with a variable
#  called 'duration,' the length of time in seconds that it takes initial to linearly ramp
#  to 'final.'

# The mesh for this test case is concocted from an ASTM standard for the so-called Brazillian Cylinder test
# (ASTM International, Standard Test Method for Splitting Tensile Strength of Cylindrical Concrete
# Specimens, C 496/C 496M-04, 2004).  I turned a cylinder model into a rectangular parallelpiped,
# because I already had the cylinder model.
# The model is 3-d xyz coordinates.
#
# Brazillian Parallelpiped sample dimensions:
#       z = 10.3 cm, 0.103 m, (4 in)
#       y = 5.08 cm, 0.0508 m, (2 in)
#       x = 5.08 cm, 0.0508 m, (2 in)

# Material properties are:
#   density = 2405.28 km/m^3
#   specific heat = 826.4 J/kg-K
#   thermal conductivity 1.937 w/m-K
#  alpha (thermal conductivity/(density*specific heat) is then 9.74e-7 m^2/s
#
# Initial parallelpiped temperature is room temperature 294.26 K (70 F)
# The initial fluid temperature is room temperature. We will ramp it to 477.6 K (400 F) in 10 minutes.
# We will use an h representative of natural convection conditions as the boundary condition for all sides
# on the parallelpiped.  Akin to putting the object in an oven and turning the oven on.
#  This is essentially a thermal soak.
#
# What we expect for this problem:
#  1) Use of h = 284 w/m^2-K (50 BTU/hr-ft^2-F) should cause the parallelpiped to slowly heat up to 477K.
#  2) The fluid temperature should rise from initial (294.26 K) to final (477.6 K) in 600 s.
#  3) 1) and 2) should show the convective BC is working as desired.
#
[Mesh]    # Mesh Start
# 5cm x 5cm x 10cm parallelpiped not so detailed mesh, 4 elements each end, 8 elements each long face
# Only one block (Block 1), all concrete
# Sideset definitions:
#    1 - xy plane at z=0,
#    2 - xy plane at z=-0.103,
#    3 - xz plane at y=0,
#    4 - yz plane at x=0,
#    5 - xz plane at y=0.0508,
#    6 - yz plane at x=0.0508
  file = heat_convection_3d_mesh.e
#
[]    # Mesh END

[Variables]  # Variables Start
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 294.26 # Initial parallelpiped temperature
  [../]

[]    # Variables END


[Kernels]  # Kernels Start
  [./heat]
#    type = HeatConductionRZ
     type = HeatConduction
     variable = temp
  [../]

  [./heat_ie]
#  type = HeatConductionTimeDerivativeRZ
  type = HeatConductionTimeDerivative
  variable = temp
  [../]

[]    # Kernels END


[BCs]    # Boundary Conditions Start
# Heat transfer coefficient on outer parallelpiped radius and ends
  [./convective_clad_surface]    # Convective Start
#         type = ConvectiveFluxRZ  # Convective flux, e.g. q'' = h*(Tw - Tf)
         type = ConvectiveFluxBC  # Convective flux, e.g. q'' = h*(Tw - Tf)
         boundary = '1 2 3 4 5 6'  # BC applied on top, along length, and bottom
         variable = temp
   rate = 284.      # convective heat transfer coefficient (w/m^2-K)[50 BTU/hr-ft^2-F]
         initial = 294.26    # initial ambient (lab or oven) temperature (K)
         final = 477.6      # final ambient (lab or oven) temperature (K)
   duration = 600.    # length of time in seconds that it takes the ambient
           #     temperature to ramp from initial to final
  [../]          # Convective End

[]    # BCs END

[Materials]    # Materials Start
  [./thermal]
    type = HeatConductionMaterial
    block = 1
    specific_heat = 826.4
    #thermal_conductivity = 1.937  # this makes alpha 9.74e-7 m^2/s
    thermal_conductivity = 193.7  # this makes alpha 9.74e-5 m^2/s
          # above conductivity arbitrarily increased by 2 decades to make the
          #   object soak faster for the present purposes

  [../]

  [./density]
    type = Density
    block = 1
    density = 2405.28
  [../]
[]      # Materials END

[Executioner]    # Executioner Start
   type = Transient
#   type = Steady

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


   petsc_options = '-snes_ksp_ew '
   petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type'
   petsc_options_value = '70 hypre boomeramg'
   l_max_its = 60
   nl_rel_tol = 1e-8
   nl_abs_tol = 1e-10
   l_tol = 1e-5

   start_time = 0.0
  dt = 60.
  num_steps = 20  # Total run time 1200 s

[]      # Executioner END

[Outputs]    # Output Start
  # Output Start
  file_base = out_3d
  exodus = true
[]      # Output END
#      # Input file END

modules/tensor_mechanics/test/tests/interaction_integral/interaction_integral_2d_rot.i

#This tests the Interaction-Integral evaluation capability.
#This is a 2d nonlinear-plane strain model

[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack2d_rot.e
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '0 1 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_x
    boundary = 100
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_y
    boundary = 700
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = interaction_integral_2d_rot_out
  exodus = true
  csv = true
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test4qnstt.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4qtt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.09
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.09
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_abs_tol = 1e-7
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test4qnstt_out
  exodus = true
[]

test/tests/transfers/multiapp_variable_value_sample_transfer/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  # Yes we want a slightly irregular grid
  nx = 11
  ny = 11
  # We will transfer data to the sub app, and that is currently only
  # supported from a replicated mesh
  parallel_type = replicated
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [sub]
    app_type = MooseTestApp
    positions = '0.5 0.5 0 0.7 0.7 0'
    execute_on = timestep_end
    type = TransientMultiApp
    input_files = sub.i
  []
[]

[Transfers]
  [sample_transfer]
    source_variable = u
    direction = to_multiapp
    variable = from_master
    type = MultiAppVariableValueSampleTransfer
    multi_app = sub
  []
[]

[Problem]
  parallel_barrier_messaging = false
[]

modules/stochastic_tools/test/tests/transfers/sampler_postprocessor/errors/wrong_multi_app.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = SobolSampler
    num_rows = 3
    distributions = 'uniform_left uniform_right'
    execute_on = INITIAL # create random numbers on initial and use them for each timestep
  []
[]

[MultiApps]
  [sub]
    type = TransientMultiApp
    input_files = sub.i
    positions = '0 0 0'
  []
[]

[Transfers]
  [runner]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
    execute_on = INITIAL
    check_multiapp_execute_on = false
  []
  [data]
    type = SamplerPostprocessorTransfer
    multi_app = sub
    sampler = sample
    to_vector_postprocessor = storage
    from_postprocessor = avg
    execute_on = timestep_end
    check_multiapp_execute_on = false
  []
[]

[VectorPostprocessors]
  [storage]
    type = StochasticResults
    samplers = sample
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/solid_mechanics/Rayleigh_damping/HHT_time_integration/sm/Rayleigh_HHT_sm.i

# Test for rayleigh damping implemented using HHT time integration
#
# The test is for an 1-D bar element of unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# zeta and eta correspond to the stiffness and mass proportional
# rayleigh damping alpha, beta and gamma are HHT time integration
# parameters The equation of motion in terms of matrices is:
#
# M*accel + (eta*M+zeta*K)*[(1+alpha)vel-alpha vel_old]
#   + alpha*(K*disp - K*disp_old) + K*disp = P(t+alpha dt)*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + eta*density*[(1+alpha)vel-alpha vel_old] +
#   zeta*[(1+alpha)*d/dt(Div stress)- alpha*d/dt(Div stress_old)] +
#   alpha *(Div stress - Div stress_old) +Div Stress= P(t+alpha dt)
#
# The first two terms on the left are evaluated using the Inertial
# force kernel The next three terms on the left involving zeta and
# alpha are evaluated using the StressDivergence Kernel The residual
# due to Pressure is evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure
# becomes constant.  Alpha equal to zero will result in Newmark
# integration.
[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
    eta=0.1
  [../]
  [./stiffness_x]
    type = StressDivergence
    variable = disp_x
    component = 0
    zeta = 0.1
    alpha = 0.11
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
    eta=0.1
  [../]
  [./stiffness_y]
    type = StressDivergence
    variable = disp_y
    component = 1
    zeta = 0.1
    alpha = 0.11
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
    eta = 0.1
  [../]
  [./stiffness_z]
    type = StressDivergence
    variable = disp_z
    component = 2
    zeta = 0.1
    alpha = 0.11
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
     type = MaterialTensorAux
     variable = stress_yy
     tensor = stress
     index = 1
  [../]
  [./strain_yy]
     type = MaterialTensorAux
     variable = strain_yy
     tensor = total_strain
     index = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
   type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
    boundary = bottom
    function = pressure
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    factor = 1
    alpha = 0.11
    [../]
  [../]
[]

[Materials]

  [./constant]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    youngs_modulus = 210e+09
    poissons_ratio = 0
    thermal_expansion = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 2
  dtmax = 0.1
  dtmin = 0.1
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
  [./vel_ic]
    type = PiecewiseLinear
    x = '0.0 0.5 1.0'
    y = '0.1 0.1 0.1'
    scale_factor = 1
  [../]
[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
   [./disp]
     type = NodalMaxValue
     variable = disp_y
     boundary = bottom
   [../]
   [./vel]
     type = NodalMaxValue
     variable = vel_y
     boundary = bottom
   [../]
   [./accel]
     type = NodalMaxValue
     variable = accel_y
     boundary = bottom
   [../]
   [./stress_yy]
      type = ElementAverageValue
      variable = stress_yy
   [../]
   [./strain_yy]
      type = ElementAverageValue
      variable = strain_yy
   [../]

[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/many_deforms_cap.i

# apply many large deformations, checking that the algorithm returns correctly to
# the yield surface each time


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = '(sin(0.05*t)+x)/1E0'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = '(cos(0.04*t)+x*y)/1E0'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 't/1E2'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./yield_fcn_at_zero]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'yield_fcn_at_zero'
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E3
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    tip_scheme = cap
    mc_tip_smoother = 0.0
    cap_start = 1000
    cap_rate = 1E-3
    mc_edge_smoother = 10
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    max_NR_iterations = 1000
    ep_plastic_tolerance = 1E-6
    plastic_models = mc
    debug_fspb = crash
    deactivation_scheme = safe
  [../]
[]


[Executioner]
  end_time = 1000
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = many_deforms_cap
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer/errors/sub_missing_control.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/3d_moving_penetration/pl_test3qtt.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3qtt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_abs_tol = 1e-7
  l_max_its = 10

  start_time = 0.0
  dt = 0.0125
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test3qtt_out
  exodus = true
[]

test/tests/misc/check_error/bad_stateful_material.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]

  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 'left'
    value = 1
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 2
  [../]
[]

[Materials]
  [./stateful_mat]
    type = BadStatefulMaterial
    block = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  num_steps = 4
[]

[Outputs]
  exodus = true
[]

[Debug]
  show_material_props = true
[]

modules/xfem/test/tests/corner_nodes_cut/sm/corner_node_cut.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.0 0.5 0.5 0.5'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[BCs]
  [./top_x]
    type = DirichletBC
    boundary = 2
    variable = disp_x
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.1
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 0
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# max_xfem_update = 1

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/phase_field/test/tests/GBAnisotropy/test2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 60
  ny = 30
  nz = 0
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 600
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables] # produce smooth initial GB
  [./gr0]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SpecifiedSmoothCircleIC
      x_positions = '250.0  750.0'
      y_positions = '300.0  300.0'
      z_positions = '  0.0    0.0'
      radii       = '200.0  200.0'
      invalue = 0.0
      outvalue = 1.0
      int_width = 50.0
    [../]
  [../]
  [./gr1]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 250.0
      y1 = 300.0
      radius = 200.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 50.0
    [../]
  [../]
  [./gr2]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 750.0
      y1 = 300.0
      radius = 200.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 50.0
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
    order = FIRST
    family = LAGRANGE
  [../]
  [./var_indices]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  var_name_base = gr
  op_num = 3
  [../]
[]

[AuxKernels]
  [./bnds_aux]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
    var_name_base = gr
    op_num = 3
  [../]
[]

[BCs]
  [./Periodic]
    [./top_bottom]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./CuGrGranisotropic]
    type = GBAnisotropy
    T = 600 # K

    op_num = 3
    var_name_base = gr
    wGB = 100
    length_scale = 1.0e-9
    time_scale = 1.0e-9

    # molar_volume_value = 7.11e-6 #Units:m^3/mol
    Anisotropic_GB_file_name = anisotropy_mobility.txt
    inclination_anisotropy = false
  [../]
[]

[Postprocessors]
  [./dt]
    # Outputs the current time step
    type = TimestepSize
  [../]

  [./gr1_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
  [../]
  [./gr2_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr2
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 40
  nl_rel_tol = 1e-9

  dt = 5.0
  num_steps = 2
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  csv = true
[]

modules/level_set/test/tests/transfers/copy_solution/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = 'x*x*y'
    variable = u
  [../]
[]

[Problem]
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = 'sub.i'
    execute_on = timestep_end
  [../]
[]

[Transfers]
  [./to_sub]
    type = MultiAppCopyTransfer
    variable = u
    source_variable = u
    direction = to_multiapp
    multi_app = sub
    execute_on = timestep_end
    check_multiapp_execute_on = false
  [../]
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/second_order_elements/square_branch_tri6_2d.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = TRI6
[]

[UserObjects]
  [./line_seg_cut_set_uo]
    type = LineSegmentCutSetUserObject
    cut_data = '-1.0000e-10   6.6340e-01   6.6340e-01  -1.0000e-10  0.0  1.0
                 3.3120e-01   3.3200e-01   1.0001e+00   3.3200e-01  1.0  2.0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
  [../]
[]

[Functions]
  [./right_disp_x]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
  [./top_disp_y]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionDirichletBC
    boundary = 1
    variable = disp_x
    function = right_disp_x
  [../]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = top_disp_y
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.2
  num_steps = 5000
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/tensor_mechanics/test/tests/generalized_plane_strain/generalized_plane_strain_squares.i

[Mesh]
  file = 2squares.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./scalar_strain_zz1]
    order = FIRST
    family = SCALAR
  [../]
  [./scalar_strain_zz2]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./aux_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z1]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    block = 1
  [../]
  [./react_z2]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    block = 2
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./GeneralizedPlaneStrain]
      [./gps1]
        use_displaced_mesh = true
        displacements = 'disp_x disp_y'
        scalar_out_of_plane_strain = scalar_strain_zz1
        block = '1'
      [../]
      [./gps2]
        use_displaced_mesh = true
        displacements = 'disp_x disp_y'
        scalar_out_of_plane_strain = scalar_strain_zz2
        block = '2'
      [../]
    [../]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = false
    displacements = 'disp_x disp_y'
    temperature = temp
    save_in = 'saved_x saved_y'
    block = '1 2'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]

  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./aux_strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = aux_strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottom1x]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottom1y]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
  [./bottom2x]
    type = DirichletBC
    boundary = 2
    variable = disp_x
    value = 0.0
  [../]
  [./bottom2y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    block = '1 2'
  [../]
  [./strain1]
    type = ComputePlaneSmallStrain
    displacements = 'disp_x disp_y'
    scalar_out_of_plane_strain = scalar_strain_zz1
    block = 1
    eigenstrain_names = eigenstrain
  [../]
  [./strain2]
    type = ComputePlaneSmallStrain
    displacements = 'disp_x disp_y'
    scalar_out_of_plane_strain = scalar_strain_zz2
    block = 2
    eigenstrain_names = eigenstrain
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    block = '1 2'
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-10

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/solid_mechanics_basic/edge_crack_3d_propagation.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[XFEM]
  geometric_cut_userobjects = 'cut_mesh'
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.2
  elem_type = HEX8
[]

[UserObjects]
  [./cut_mesh]
    type = MeshCut3DUserObject
    mesh_file = mesh_edge_crack.xda
    size_control = 0.1
    n_step_growth = 1
    function_x = growth_func_x
    function_y = growth_func_y
    function_z = growth_func_z
  [../]
[]

[Functions]
  [./growth_func_x]
    type = ParsedFunction
    value = 1
  [../]
  [./growth_func_y]
    type = ParsedFunction
    value = 0
  [../]
  [./growth_func_z]
    type = ParsedFunction
    value = 0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[Functions]
  [./top_trac_y]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_y]
    type = FunctionNeumannBC
    boundary = top
    variable = disp_y
    function = top_trac_y
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = bottom
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
    block = 0
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 5.0
  max_xfem_update = 1
[]

[Outputs]
  file_base = edge_crack_3d_propagation_out
  execute_on = 'timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/jacobian/chem08.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Dissolution with temperature, with one primary variable = 0 and stoichiometry > 1
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.2
  [../]
  [./b]
    initial_condition = 0.0
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1.234
  [../]
  [./ini_sec_conc]
    initial_condition = 0.222
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1E10
    stoichiometry = 2
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 2.2E10
    stoichiometry = 3
  [../]
  [./temp]
    type = Diffusion
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b temp'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '0.5 0.8'
    reactions = '2 3'
    specific_reactive_surface_area = -44.4E-2
    kinetic_rate_constant = 0.678
    activation_energy = 4.4
    molar_volume = 3.3
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = 1.1
    eta_exponent = 1.2
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_sec_conc
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

modules/combined/test/tests/glued_contact/glued_contact_mechanical_constraint_test.i

# This is a mechanical constraint (contact formulation) version of glued_contact_mechanical_constraint.i
[Mesh]
  file = glued_contact_test.e
[]

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./up]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.5001'
  [../]

  [./lateral]
    type = PiecewiseLinear
    x = '0 1 2 3'
    y = '0 0 1 0'
    scale_factor = 0.5
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e6
    model = glued
    formulation = kinematic
    system = constraint
  [../]
[]

[BCs]

  [./bottom_lateral]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = lateral
  [../]

  [./bottom_up]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = up
  [../]

  [./bottom_out]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./top]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff1_strain]
    type= ComputeFiniteStrain
    block = '1'
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]

  [./stiffStuff2]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff2_strain]
    type= ComputeFiniteStrain
    block = '2'
  [../]
  [./stiffStuff2_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  #petsc_options_iname = '-pc_type -pc_hypre_type -snes_type -snes_ls -snes_linesearch_type -ksp_gmres_restart'
  #petsc_options_value = 'hypre    boomeramg      ls         basic    basic                    101'
  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'ilu      101'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-8
  l_tol = 1e-4

  l_max_its = 100
  nl_max_its = 10
  dt = 0.1
  num_steps = 30

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Postprocessors]
  active = ''
  [./resid]
    type = Residual
  [../]
  [./iters]
    type = NumNonlinearIterations
  [../]
[]

[Outputs]
  file_base = mechanical_constraint_out
  exodus = true
[]

modules/xfem/test/tests/solid_mechanics_basic/mesh_grow.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[XFEM]
  geometric_cut_userobjects = 'cut_mesh'
  output_cut_plane = true
  qrule = volfrac
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = -0.4
  zmax = 0.6
  elem_type = HEX8
[]

[UserObjects]
  [./cut_mesh]
    type = MeshCut3DUserObject
    mesh_file = mesh_grow.xda
    function_x = growth_func_x
    function_y = growth_func_y
    function_z = growth_func_z
# The current gold file does not grow the cutting mesh, but this is something
# that needs to be tested more in the future.
#    size_control = 0.05
#    n_step_growth = 50
  [../]
[]

[Functions]
  [./growth_func_x]
    type = ParsedFunction
    value = 5*(x-0.3)+z
  [../]
  [./growth_func_y]
    type = ParsedFunction
    value = 5*(y-0.5)+(z+x)/2
  [../]
  [./growth_func_z]
    type = ParsedFunction
    value = 5*(z-0.1)+x
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[Functions]
  [./top_trac_y]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_y]
    type = FunctionNeumannBC
    boundary = top
    variable = disp_y
    function = top_trac_y
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = bottom
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = mesh_grow
  execute_on = 'timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/solid_mechanics/test/tests/line_material_symm_tensor_sampler/line_material_symm_tensor_sampler.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
  elem_type = HEX
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e-6
  [../]
[]

[Variables]
  active = 'x_disp y_disp z_disp'

  [./x_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./y_disp]
    order = FIRST
    family = LAGRANGE
  [../]

  [./z_disp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
 [../]
 [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
 [../]
[]

[AuxKernels]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
  [../]
[]

[VectorPostprocessors]
  [./vonmises]
    type = LineMaterialSymmTensorSampler
    start = '0.1667 0.4 0.45'
    end   = '0.8333 0.6 0.55'
    property = stress
    quantity = vonmises
    sort_by = id
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = x_disp
    disp_y = y_disp
    disp_z = z_disp
  [../]
[]

[BCs]

  [./front]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = 5
    function = rampConstant
  [../]

  [./back_x]
    type = DirichletBC
    variable = x_disp
    boundary = 0
    value = 0.0
  [../]

  [./back_y]
    type = DirichletBC
    variable = y_disp
    boundary = 0
    value = 0.0
  [../]

  [./back_z]
    type = DirichletBC
    variable = z_disp
    boundary = 0
    value = 0.0
  [../]

[]

[Materials]
  [./constant]
    type = LinearIsotropicMaterial
    block = 0
    youngs_modulus = 1e6
    poissons_ratio = .3
    disp_x = x_disp
    disp_y = y_disp
    disp_z = z_disp
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK



  l_max_its = 100

  start_time = 0.0
  num_steps = 99999
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  file_base = out
  exodus = true
  csv = true
[]

modules/richards/test/tests/theis/th22.i

# two-phase, fully-saturated
# production
[Mesh]
  type = FileMesh
  file = th02_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1 2 4 20'
    x = '0 1 10 100'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]

  [./total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[ICs]
  [./water_ic]
    type = FunctionIC
    variable = pwater
    function = initial_pressure
  [../]
  [./gas_ic]
    type = FunctionIC
    variable = pgas
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsPolyLineSink
    pressures = '-1E9 1E9'
    fluxes = '200 200'
    point_file = th01.points
    SumQuantityUO = total_outflow_mass
    variable = pwater
  [../]
[]


[Postprocessors]
  [./flow_report]
    type = RichardsPlotQuantity
    uo = total_outflow_mass
  [../]
  [./p50]
    type = PointValue
    variable = pwater
    point = '50 0 0'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E5
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    mat_porosity = 0.1
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 1E-5'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-7 1E-10 20 1E-10 1E-100'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 100
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = th22
  exodus = true
  csv = true
[]

modules/phase_field/test/tests/GBAnisotropy/test1.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 60
  ny = 30
  nz = 0
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 600
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 3
  var_name_base = gr
  wGB = 100
  length_scale = 1.0e-9
  time_scale = 1.0e-9
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./Tricrystal2CircleGrainsIC]
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
    order = FIRST
    family = LAGRANGE
  [../]
  [./var_indices]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./bnds_aux]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./Periodic]
    [./top_bottom]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./CuGrGranisotropic]
    type = GBAnisotropy
    T = 600 # K

    # molar_volume_value = 7.11e-6 #Units:m^3/mol
    Anisotropic_GB_file_name = anisotropy_mobility.txt   # anisotropy_energy.txt
    inclination_anisotropy = false # true
  [../]
[]

[Postprocessors]
  [./dt]
    # Outputs the current time step
    type = TimestepSize
  [../]

  [./gr1_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
  [../]
  [./gr2_area]
    type = ElementIntegralVariablePostprocessor
    variable = gr2
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 40
  nl_rel_tol = 1e-9

  num_steps = 1
  dt = 10.0
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  csv = true
[]

test/tests/restart/kernel_restartable/kernel_restartable_second.i

###########################################################
# This test exercises the restart system and verifies
# correctness with parallel computation, but distributed
# and with threading.
#
# See kernel_restartable.i
#
# @Requirement F1.60
# @Requirement P1.10
# @Requirement P1.20
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = RestartDiffusion
    variable = u
    coef = 1
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 1e-2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Problem]
  restart_file_base = kernel_restartable_restart_cp/LATEST
[]

test/tests/kernels/ode/coupled_ode_td_var_ic_from_mesh.i

[Mesh]
  type = FileMesh
  file = 'coupled_ode_td_out.e'
[]

[Variables]
  [./f]
    family = SCALAR
    order = FIRST
    initial_from_file_var = f
    initial_from_file_timestep = 'LATEST'
  [../]
  [./f_times_mult]
    family = SCALAR
    order = FIRST
    initial_from_file_var = f_times_mult
    initial_from_file_timestep = 'LATEST'
  [../]
[]

[ScalarKernels]
  [./dT]
    type = CoupledODETimeDerivative
    variable = f
    v = f_times_mult
  [../]

  [./src]
    type = ParsedODEKernel
    variable = f
    function = '-1'
  [../]

  [./f_times_mult_1]
    type = ParsedODEKernel
    variable = f_times_mult
    function = 'f_times_mult'
  [../]

  [./f_times_mult_2]
    type = ParsedODEKernel
    variable = f_times_mult
    function = '-f * g'
    args = 'f g'
  [../]
[]

[AuxVariables]
  [./g]
    family = SCALAR
    order = FIRST
  [../]
[]

[Functions]
  [./function_g]
    type = ParsedFunction
    value = '(1 + t)'
  [../]
[]

[AuxScalarKernels]
  [./set_g]
    type = FunctionScalarAux
    function = function_g
    variable = g
    execute_on = 'linear initial'
  [../]
[]

[Postprocessors]
  [./f]
    type = ScalarVariable
    variable = f
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 3
  nl_abs_tol = 1e-9
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/frictional_contact/sliding_elastic_blocks_2d/sm/sliding_elastic_blocks_2d_tp_sm.i

[Mesh]
  file = sliding_elastic_blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_x = diag_saved_x
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip]
    type = PenetrationAux
    variable = accum_slip
    execute_on = timestep_end
    quantity = accumulated_slip
    boundary = 3
    paired_boundary = 2
  [../]
  [./tangential_force_x]
    type = PenetrationAux
    variable = tang_force_x
    execute_on = timestep_end
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./tangential_force_y]
    type = PenetrationAux
    variable = tang_force_y
    execute_on = timestep_end
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.005
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e7
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.05
  num_steps = 1000
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-09
  dtmin = 0.01
  l_tol = 1e-3

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    system = constraint
    formulation = tangential_penalty
    friction_coefficient = '0.25'
    penalty = 1e6
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    slave = 3
    master = 2
  [../]
[]

modules/tensor_mechanics/test/tests/2D_different_planes/gps_jacobian_testing_yz.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = square_yz_plane.e
[]

[Variables]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./scalar_strain_xx]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./generalized_plane_strain]
    block = 1
    strain = SMALL
    scalar_out_of_plane_strain = scalar_strain_xx
    out_of_plane_direction = x
    planar_formulation = GENERALIZED_PLANE_STRAIN
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.0
    youngs_modulus = 1
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-ksp_type -pc_type -snes_type'
  petsc_options_value = 'bcgs bjacobi test'

  end_time = 1.0
[]

modules/tensor_mechanics/test/tests/beam/static/torsion_2.i

# Torsion test with user provided Ix

# A beam of length 1 m is fixed at one end and a moment  of 5 Nm
# is applied along the axis of the beam.
# G = 7.69e9
# Ix = 1e-5
# The axial twist at the free end of the beam is:
# phi = TL/GIx = 6.5e-4

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 1.0
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/LineElementMaster]
  [./block_all]
    add_variables = true
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'

    # Geometry parameters
    area = 0.5
    Iy = 1e-5
    Iz = 1e-5
    Ix = 1e-5

    y_orientation = '0.0 1.0 0.0'

    block = 0
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = ConstantRate
    variable = rot_x
    boundary = right
    rate = 5.0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 2.0e9
    poissons_ratio = 0.3
    shear_coefficient = 1.0
    block = 0
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '1.0 0.0 0.0'
    variable = rot_x
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/porous_flow/examples/restart/gas_injection.i

# Using the results from the equilibrium run to provide the initial condition for
# porepressure, we now inject a gas phase into the brine-saturated reservoir. In this
# example, where the mesh used is identical to the mesh used in gravityeq.i, we can use
# the basic restart capability by simply setting the initial condition for porepressure
# using the results from gravityeq.i.
#
# Even though the gravity equilibrium is established using a 2D mesh, in this example,
# we shift the mesh 0.1 m to the right and rotate it about the Y axis to make a 2D radial
# model.
#
# Methane injection takes place over the surface of the hole created by rotating the mesh,
# and hence the injection area is 2 pi r h. We can calculate this using an AreaPostprocessor,
# and then use this in a ParsedFunction to calculate the injection rate so that 10 kg/s of
# methane is injected.
#
# Results can be improved by uniformly refining the initial mesh.
#
# Note: as this example uses the results from a previous simulation, gravityeq.i MUST be
# run before running this input file.

[Mesh]
  uniform_refine = 1
  [file]
    type = FileMeshGenerator
    file = gravityeq_out.e
  []
  [./translate]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0.1 0 0'
    input = file
  [../]
[]

[Problem]
  coord_type = RZ
  rz_coord_axis = Y
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 -9.81 0'
  temperature_unit = Celsius
[]

[Variables]
  [./pp_liq]
    initial_from_file_var = porepressure
  [../]
  [./sat_gas]
    initial_condition = 0
  [../]
[]

[AuxVariables]
  [./temperature]
    initial_condition = 50
  [../]
  [./xnacl]
    initial_condition = 0.1
  [../]
  [./brine_density]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./methane_density]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
  [./pp_gas]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./sat_liq]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pp_liq
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    variable = pp_liq
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = sat_gas
    fluid_component = 1
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    variable = sat_gas
    fluid_component = 1
  [../]
[]

[AuxKernels]
  [./brine_density]
    type = PorousFlowPropertyAux
    property = density
    variable = brine_density
    execute_on = 'initial timestep_end'
  [../]
  [./methane_density]
    type = PorousFlowPropertyAux
    property = density
    variable = methane_density
    phase = 1
    execute_on = 'initial timestep_end'
  [../]
  [./pp_gas]
    type = PorousFlowPropertyAux
    property = pressure
    phase = 1
    variable = pp_gas
    execute_on = 'initial timestep_end'
  [../]
  [./sat_liq]
    type = PorousFlowPropertyAux
    property = saturation
    variable = sat_liq
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./gas_injection]
    type = PorousFlowSink
    boundary = left
    variable = sat_gas
    flux_function = injection_rate
    fluid_phase = 1
  [../]
  [./brine_out]
    type = PorousFlowPiecewiseLinearSink
    boundary = right
    variable = pp_liq
    multipliers = '0 1e9'
    pt_vals = '0 1e9'
    fluid_phase = 0
    flux_function = 1e-6
    use_mobility = true
  [../]
[]

[Functions]
  [./injection_rate]
    type = ParsedFunction
    vals = injection_area
    vars = area
    value = '-10/area'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp_liq sat_gas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1e-5
    m = 0.5
    sat_lr = 0.2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./brine]
      type = BrineFluidProperties
    [../]
    [./methane]
      type = MethaneFluidProperties
    [../]
    [./methane_tab]
      type = TabulatedFluidProperties
      fp = methane
      save_file = false
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./ps]
    type = PorousFlow2PhasePS
    phase0_porepressure = pp_liq
    phase1_saturation = sat_gas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./brine]
    type = PorousFlowBrine
    compute_enthalpy = false
    compute_internal_energy = false
    xnacl = xnacl
    phase = 0
  [../]
  [./methane]
    type = PorousFlowSingleComponentFluid
    compute_enthalpy = false
    compute_internal_energy = false
    fp = methane_tab
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-13 0 0 0 1e-13 0  0 0 1e-13'
  [../]
  [./relperm_liq]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.2
    sum_s_res = 0.3
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
    s_res = 0.1
    sum_s_res = 0.3
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type'
    petsc_options_value = ' asm      lu           NONZERO'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1e8
  nl_abs_tol = 1e-12
  nl_rel_tol = 1e-06
  nl_max_its = 20
  dtmax = 1e6
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1e1
  [../]
[]

[Postprocessors]
  [./mass_ph0]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
  [./mass_ph1]
    type = PorousFlowFluidMass
    fluid_component = 1
    execute_on = 'initial timestep_end'
  [../]
  [./injection_area]
    type = AreaPostprocessor
    boundary = left
    execute_on = initial
  [../]
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  perf_graph = true
  checkpoint = true
[]

modules/tensor_mechanics/test/tests/elem_prop_read_user_object/prop_elem_read.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  displacements = 'disp_x disp_y'
  nx = 2
  ny = 2
[]

[Variables]
  [./disp_x]
    block = 0
  [../]
  [./disp_y]
    block = 0
  [../]
[]

[GlobalParams]
  volumetric_locking_correction=true
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_yy]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.05*t
  [../]
[]

[UserObjects]
  [./prop_read]
    type = ElementPropertyReadFile
    prop_file_name = 'input_file.txt'
    # Enter file data as prop#1, prop#2, .., prop#nprop
    nprop = 4
    read_type = element
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
  [./e_yy]
    type = RankTwoAux
    variable = e_yy
    rank_two_tensor = elastic_strain
    index_j = 1
    index_i = 1
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = tdisp
  [../]
[]

[Materials]
  [./elasticity_tensor_with_Euler]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 0.176e5 0.176e5 1.684e5 0.176e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
    read_prop_user_object = prop_read
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y'
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 0
  [../]
[]

[Postprocessors]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_yy]
    type = ElementAverageValue
    variable = e_yy
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.05
  num_steps = 1
  nl_abs_step_tol = 1e-10

[]

[Outputs]
  file_base = prop_elem_read_out
  exodus = true
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
    use_displaced_mesh = true
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_2/plane2_template2.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane2_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 200
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/richards/test/tests/pressure_pulse/pp_lumped_22.i

# investigating pressure pulse in 1D with 2 phase
# transient

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E3
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E3
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[ICs]
  [./water_ic]
    type = ConstantIC
    value = 2E6
    variable = pwater
  [../]
  [./gas_ic]
    type = ConstantIC
    value = 2E6
    variable = pgas
  [../]
[]


[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pwater
  [../]
  [./left_gas]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pgas
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas pconstraint'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
  [./pconstraint]
    type = RichardsPPenalty
    variable = pgas
    a = 1E-8
    lower_var = pwater
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    viscosity = '1E-3 1E-5'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-pc_factor_shift_type'
    petsc_options_value = 'nonzero'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  dtmin = 1E3
  nl_rel_tol = 1.e-9
  nl_max_its = 10
  end_time = 1E4
[]

[Outputs]
  file_base = pp_lumped_22
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

modules/phase_field/test/tests/actions/conserved_split_1var.i

#
# Test the conserved action with split solve and 1 variable
#
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  xmax = 50
  ymax = 50
  elem_type = QUAD
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./cv]
        solve_type = REVERSE_SPLIT
        free_energy = F
        kappa = 2.0
        mobility = 1.0
      [../]
    [../]
  [../]
[]

[ICs]
  [./InitialCondition]
    type = CrossIC
    x1 = 5.0
    y1 = 5.0
    x2 = 45.0
    y2 = 45.0
    variable = cv
  [../]
[]

[Materials]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'cv'
    function = '(1-cv)^2 * (1+cv)^2'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'

  l_max_its = 30
  l_tol = 1.0e-5
  nl_max_its = 10
  nl_rel_tol = 1.0e-12

  start_time = 0.0
  num_steps = 5
  dt = 0.7
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/grain_tracker_test/grain_tracker_test_elemental.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  nz = 0
  xmax = 1000
  ymax = 1000
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 12 # Should match grain_num so we can test with FauxGrainTracker too
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    grain_num = 12 # Number of grains
    coloring_algorithm = bt # bt will assign one grain to each op if they are the same
    rand_seed = 8675
  [../]
  [./grain_tracker]
    type = GrainTracker
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./CuGrGr]
    type = GBEvolution
    T = 500 # K
    wGB = 100 # nm
    GBmob0 = 2.5e-6
    Q = 0.23
    GBenergy = 0.708
    molar_volume = 7.11e-6
  [../]
[]

[Postprocessors]
  [./DOFs]
    type = NumDOFs
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'
  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 2
  dt = 100.0
[]

[Adaptivity]
  marker = error_marker
  max_h_level = 1
  [./Markers]
    active = 'error_marker'
    [./bnds_marker]
      type = ValueThresholdMarker
      invert = true
      refine = 0.85
      coarsen = 0.975
      third_state = DO_NOTHING
      variable = bnds
    [../]
    [./error_marker]
      type = ErrorFractionMarker
      coarsen = 0.1
      indicator = bnds_error
      refine = 0.7
    [../]
  [../]
  [./Indicators]
    [./bnds_error]
      type = GradientJumpIndicator
      variable = bnds
    [../]
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/inelastic_strain/elas_plas/elas_plas_nl1_cycle.i

#
# Test for effective strain calculation.
# Boundary conditions from NAFEMS test NL1
#
#
# This is not a verification test. The boundary conditions are applied such
# that the first step generates only elastic stresses. The rest of the load
# steps generate cycles of tension and compression in the axial (i.e., y-axis)
# direction. The axial stresses and strains also cycle, however the effective
# plastic strain increases in value throughout the analysis.
#
[GlobalParams]
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = one_elem2.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eff_plastic_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = vonmises
    scalar_type = VonMisesStress
    execute_on = timestep_end
  [../]
  [./pressure]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = pressure
    scalar_type = Hydrostatic
    execute_on = timestep_end
  [../]
  [./elastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./elastic_strain_yy]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./elastic_strain_zz]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./plastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./plastic_strain_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./plastic_strain_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./tot_strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = tot_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./tot_strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = tot_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./tot_strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = tot_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./eff_plastic_strain]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = eff_plastic_strain
  [../]
[]

[Functions]
  [./appl_dispy]
    type = PiecewiseLinear
    x = '0     1.0     2.0     3.0     4.0     5.0      6.0    7.0     8.0    9.0     10.0      11.0     12.0'
    y = '0.0 0.208e-4 0.50e-4 1.00e-4 0.784e-4 0.50e-4  0.0  0.216e-4 0.5e-4 1.0e-4 0.785e-4  0.50e-4  0.0'
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 101
    value = 0.0
  [../]
  [./origin_x]
    type = DirichletBC
    variable = disp_x
    boundary = 103
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 102
    value = 0.0
  [../]
  [./origin_y]
    type = DirichletBC
    variable = disp_y
    boundary = 103
    value = 0.0
  [../]
  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = appl_dispy
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    youngs_modulus = 250e9
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputePlaneFiniteStrain
    block = 1
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'isoplas'
    block = 1
  [../]
  [./isoplas]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 5e6
    hardening_constant = 0.0
    relative_tolerance = 1e-20
    absolute_tolerance = 1e-8
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 20

  dt = 1.0
  start_time = 0.0
  num_steps = 100
  end_time = 12.0
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./stress_xy]
    type = ElementAverageValue
    variable = stress_xy
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./pressure]
    type = ElementAverageValue
    variable = pressure
  [../]
  [./el_strain_xx]
    type = ElementAverageValue
    variable = elastic_strain_xx
  [../]
  [./el_strain_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./el_strain_zz]
    type = ElementAverageValue
    variable = elastic_strain_zz
  [../]
  [./pl_strain_xx]
    type = ElementAverageValue
    variable = plastic_strain_xx
  [../]
  [./pl_strain_yy]
    type = ElementAverageValue
    variable = plastic_strain_yy
  [../]
  [./pl_strain_zz]
    type = ElementAverageValue
    variable = plastic_strain_zz
  [../]
  [./eff_plastic_strain]
    type = ElementAverageValue
    variable = eff_plastic_strain
  [../]
  [./tot_strain_xx]
    type = ElementAverageValue
    variable = tot_strain_xx
  [../]
  [./tot_strain_yy]
    type = ElementAverageValue
    variable = tot_strain_yy
  [../]
  [./tot_strain_zz]
    type = ElementAverageValue
    variable = tot_strain_zz
  [../]
  [./disp_x1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_x
  [../]
  [./disp_x4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_x
  [../]
  [./disp_y1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/examples/tidal/barometric_fully_confined.i

# A fully-confined aquifer is fully saturated with water
# Barometric loading is applied to the aquifer.
# Because the aquifer is assumed to be sandwiched between
# impermeable aquitards, the barometric pressure is not felt
# directly by the porepressure.  Instead, the porepressure changes
# only because the barometric loading applies a total stress to
# the top surface of the aquifer.
#
# To replicate standard poroelasticity exactly:
# (1) the PorousFlowBasicTHM Action is used;
# (2) multiply_by_density = false;
# (3) PorousFlowConstantBiotModulus is used
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
  biot_coefficient = 0.6
  multiply_by_density = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    value = 0.0
    boundary = 'left right'
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    value = 0.0
    boundary = 'bottom top'
  [../]
  [./fix_z_bottom]
    type = DirichletBC
    variable = disp_z
    value = 0.0
    boundary = back
  [../]
  [./barometric_loading]
    type = FunctionNeumannBC
    variable = disp_z
    function = -1000.0 # atmospheric pressure increase of 1kPa
    boundary = front
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
    [../]
  [../]
[]

[PorousFlowBasicTHM]
  coupling_type = HydroMechanical
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  gravity = '0 0 0'
  fp = the_simple_fluid
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 10.0E9 # drained bulk modulus
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # only the initial value of this is ever used
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    solid_bulk_compliance = 1E-10
    fluid_bulk_modulus = 2E9
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0   0 1E-12 0   0 0 1E-12'
  [../]
[]

[Postprocessors]
  [./pp]
    type = PointValue
    point = '0.5 0.5 0.5'
    variable = porepressure
  [../]
[]


[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  console = true
  csv = true
[]

modules/chemical_reactions/test/tests/exceptions/extra_sto.i

# Additional stoichiometric coefficient in AqueousEquilibriumRxnAux AuxKernel

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[AuxVariables]
  [./c]
  [../]
  [./gamma_a]
  [../]
  [./gamma_b]
  [../]
[]

[AuxKernels]
  [./c]
    type = AqueousEquilibriumRxnAux
    variable = c
    v = 'a b'
    gamma_v = 'gamma_a gamma_b'
    sto_v = '1 2 3'
    log_k = 1
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = porosity
    prop_values = 0.2
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
[]

test/tests/kernels/coupled_time_derivative/ad_coupled_time_derivative_test.i

###########################################################
# This is a simple test of the CoupledTimeDerivative kernel.
# The expected solution for the variable v is
# v(x) = 1/2 * (x^2 + x)
###########################################################

[Mesh]
  type = GeneratedMesh
  nx = 5
  ny = 5
  dim = 2
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./time_u]
    type = TimeDerivative
    variable = u
  [../]
  [./fn_u]
    type = BodyForce
    variable = u
    function = 1
  [../]
  [./time_v]
    type = ADCoupledTimeDerivative
    variable = v
    v = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = v
    boundary = 'left'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = v
    boundary = 'right'
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'NEWTON'
[]

[Outputs]
  exodus = true
  file_base = coupled_time_derivative_test_out
[]

modules/tensor_mechanics/test/tests/static_deformations/cosserat_glide_fake_plastic.i

# Example taken from Appendix A of
# S Forest "Mechanics of Cosserat media An introduction".  Available from http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.154.4476&rep=rep1&type=pdf
#
# This example uses plasticity, but with inifinitely large yield strength, so it is really elasticity
#
# Analytically, the displacements are
# wc_z = B sinh(w_e y)
# disp_x = (2 mu_c B / w_e / (mu + mu_c)) (1 - cosh(w_e y))
# with w_e^2 = 2 mu mu_c / be / (mu + mu_c)
# and B = arbitrary integration constant
#
# Also, the only nonzero stresses are
# m_zy = 2 B be w_e cosh(w_e y)
# si_yx = -4 mu mu_c/(mu + mu_c) B sinh(w_e y)
#
# MOOSE gives these stress components correctly.
# However, it also gives a seemingly non-zero si_xy
# component.  Upon increasing the resolution of the
# mesh (ny=10000, for example), the stress components
# are seen to limit correctly to the above forumlae
#
# I use mu = 2, mu_c = 3, be = 0.6, so w_e = 2
# Also i use B = 1, so at y = 1
# wc_z = 3.626860407847
# disp_x = -1.65731741465
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 100
  ymax = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./z_couple]
    type = StressDivergenceTensors
    variable = wc_z
    displacements = 'wc_x wc_y wc_z'
    component = 2
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
  [./z_moment]
    type = MomentBalancing
    variable = wc_z
    component = 2
  [../]
[]

[BCs]
  # zmin is called back
  # zmax is called front
  # ymin is called bottom
  # ymax is called top
  # xmin is called left
  # xmax is called right
  [./disp_x_zero_at_y_zero]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value = 0
  [../]
  [./disp_x_fixed_at_y_max]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value = -1.65731741465
  [../]
  [./no_dispy]
    type = DirichletBC
    variable = disp_y
    boundary = 'back front bottom top left right'
    value = 0
  [../]
  [./no_dispz]
    type = DirichletBC
    variable = disp_z
    boundary = 'back front bottom top left right'
    value = 0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = 'back front bottom top left right'
    value = 0
  [../]
  [./no_wc_y]
    type = DirichletBC
    variable = wc_y
    boundary = 'back front bottom top left right'
    value = 0
  [../]
  [./wc_z_zero_at_y_zero]
    type = DirichletBC
    variable = wc_z
    boundary = bottom
    value = 0
  [../]
  [./wc_z_fixed_at_y_max]
    type = DirichletBC
    variable = wc_z
    boundary = top
    value = 3.626860407847
  [../]
[]

[AuxVariables]
  [./stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeCosseratElasticityTensor
    B_ijkl = '1.1 0.6 0.6' # In Forest notation this is alpha=1.1 (this is unimportant), beta=gamma=0.6.
    fill_method_bending = 'general_isotropic'
    E_ijkl = '1 2 3' # In Forest notation this is lambda=1 (this is unimportant), mu=2, mu_c=3
    fill_method = 'general_isotropic'
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
  [../]
  [./stress_fake_plasticity]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-12
  [../]
[]

[VectorPostprocessors]
  [./soln]
    type = LineValueSampler
    sort_by = y
    variable = 'disp_x wc_z stress_yx couple_stress_zy'
    start_point = '0 0 0'
    end_point = '0 1 0'
    num_points = 11
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol'
    petsc_options_value = 'gmres asm lu 1E-10 1E-14 10 1E-15 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = cosserat_glide_fake_plastic_out
  exodus = false
  csv = true
[]

modules/stochastic_tools/test/tests/transfers/errors/master_wrong_control.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_left uniform_right'
    execute_on = 'initial timestep_end'
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub_wrong_control.i
    sampler = sample
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

modules/tensor_mechanics/test/tests/ad_elastic/incremental_small_elastic-noad.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_x]
    scaling = 1e-10
  [../]
  [./disp_y]
    scaling = 1e-10
  [../]
  [./disp_z]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_x]
    type = StressDivergenceTensors
    component = 0
    variable = disp_x
  [../]
  [./stress_y]
    type = StressDivergenceTensors
    component = 1
    variable = disp_y
  [../]
  [./stress_z]
    type = StressDivergenceTensors
    component = 2
    variable = disp_z
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
  file_base = incremental_small_elastic_out
[]

modules/tensor_mechanics/test/tests/combined_creep_plasticity/combined_stress_prescribed.i

#
# 1x1x1 unit cube with time-varying pressure on top face
#
# The problem is a one-dimensional creep analysis.  The top face has a
#    pressure load that is a function of time.  The creep strain can be
#    calculated analytically.  There is no practical active linear
#    isotropic plasticity because the yield stress for the plasticity
#    model is set to 1e30 MPa, which will not be reached in this
#    regression test.
#
# The analytic solution to this problem is:
#
#    d ec
#    ---- = a*S^b  with S = c*t^d
#     dt
#
#    d ec = a*c^b*t^(b*d) dt
#
#         a*c^b
#    ec = ----- t^(b*d+1)
#         b*d+1
#
#    where S  = stress
#          ec = creep strain
#          t  = time
#          a  = constant
#          b  = constant
#          c  = constant
#          d  = constant
#
# With a = 3e-24,
#      b = 4,
#      c = 1,
#      d = 1/2, and
#      t = 32400
#   we have
#
#   S = t^(1/2) = 180
#
#   ec = 1e-24*t^3 = 3.4012224e-11
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy creep_strain_yy'
  [../]
[]

[Functions]
  [./pressure]
    type = ParsedFunction
    value = 'sqrt(t)'
  [../]

  [./dts]
    type = PiecewiseLinear
    y = '1e-2 1e-1 1e0 1e1 1e2'
    x = '0    7e-1 7e0 7e1 1e2'
  [../]
[]

[BCs]
  [./top_pressure]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    function = pressure
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.8e7
    poissons_ratio = 0.3
  [../]
  [./creep_plas]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'creep plas'
    tangent_operator = elastic
  [../]
  [./creep]
    type = PowerLawCreepStressUpdate
    coefficient = 3.0e-24
    n_exponent = 4
    m_exponent = 0
    activation_energy = 0
  [../]
  [./plas]
    type = IsotropicPlasticityStressUpdate
    hardening_constant = 1
    yield_stress = 1e30
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = ' lu       superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-7
  l_tol = 1e-6
  start_time = 0.0
  end_time = 32400
  dt = 1e-2
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Postprocessors]
  [./timestep]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/time_steppers/constant_dt_regrowth/constant_dt_regrowth.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Problem]
  type = FailingProblem
  fail_step = 3
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/materials/output/output.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmax = 10
  ymax = 10
  uniform_refine = 1
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 10
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./test_material]
    type = OutputTestMaterial
    block = 0
    variable = u
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/glued_penalty.i

[Mesh]
  file = blocks_2d_nogap.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.01
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e7
    poissons_ratio = 0.3
  [../]
  [./right]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    system = Constraint
    master = 2
    slave = 3
    model = glued
    formulation = penalty
    penalty = 1e+7
  [../]
[]

test/tests/postprocessors/scalar_variable/scalar_variable_pps.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[ScalarKernels]
  [time]
    type = ODETimeDerivative
    variable = v
  []
  [flux_sink]
    type = PostprocessorSinkScalarKernel
    variable = v
    postprocessor = scale_flux
  []
[]

[BCs]
  [right]
    type = DirichletBC
    value = 0
    variable = u
    boundary = 'right'
  []
  [left]
    type = ADMatchedScalarValueBC
    variable = u
    v = v
    boundary = 'left'
  []
[]

[Variables]
  [u][]
  [v]
    family = SCALAR
    order = FIRST
    initial_condition = 1
  []
[]

[Postprocessors]
  [flux]
    type = SideFluxIntegral
    variable = u
    diffusivity = 1
    boundary = 'left'
    execute_on = 'initial nonlinear linear timestep_end'
  []
  [scale_flux]
    type = ScalePostprocessor
    scaling_factor = -1
    value = flux
    execute_on = 'initial nonlinear linear timestep_end'
  []
  [reporter]
    type = ScalarVariable
    variable = v
    execute_on = 'initial timestep_end'
  []
[]

[Executioner]
  type = Transient
  dt = .1
  end_time = 1
  solve_type = PJFNK
  nl_rel_tol = 1e-12
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/2D_geometries/3D-RZ_finiteStrain_test.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces, using 3D geometry.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000 at t = 1.0, respectively. The resulting compressive
# tangential stress is largest at the inner wall and, from the above equation, has a
# value of -271429.
#
# RESULTS are below. Since stresses are average element values, values for the
# edge element and one-element-in are used to extrapolate the stress to the
# inner surface. The vesrion of the tests that are checked use the coarsest meshes.
#
#  Mesh    Radial elem   S(edge elem)  S(one elem in)  S(extrap to surf)
# 1D-SPH
# 2D-RZ        12 (x10)    -265004      -254665        -270174
#  3D          12 (6x6)    -261880      -252811        -266415
#
# 1D-SPH
# 2D-RZ        48 (x10)    -269853      -266710        -271425
#  3D          48 (10x10)  -268522      -265653        -269957
#
# The numerical solution converges to the analytical solution as the mesh is
# refined.

[Mesh]
  file = 3D_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    block = 1
  [../]
[]

[AuxVariables]
  [./stress_theta]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_theta]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_theta]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_theta
    execute_on = timestep_end
  [../]
  [./strain_theta]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 2
    index_j = 2
    variable = strain_theta
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.345
    block = 1
  [../]

  [./elastic_strain]
    type = ComputeFiniteStrainElasticStress
    block = 1
  [../]
[]

[BCs]
# pin particle along symmetry planes
  [./no_disp_x]
    type = DirichletBC
    variable = disp_x
    boundary = xzero
    value = 0.0
  [../]

  [./no_disp_y]
    type = DirichletBC
    variable = disp_y
    boundary = yzero
    value = 0.0
  [../]

  [./no_disp_z]
    type = DirichletBC
    variable = disp_z
    boundary = zzero
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = outer
    component = 0
    function = '200000*t'
  [../]

 [./exterior_pressure_y]
    type = Pressure
    variable = disp_y
    boundary = outer
    component = 1
    function = '200000*t'
  [../]

[./exterior_pressure_z]
    type = Pressure
    variable = disp_z
    boundary = outer
    component = 2
    function = '200000*t'
  [../]

  [./interior_pressure_x]
    type = Pressure
    variable = disp_x
    boundary = inner
    component = 0
    function = '100000*t'
  [../]

  [./interior_pressure_y]
    type = Pressure
    variable = disp_y
    boundary = inner
    component = 1
    function = '100000*t'
  [../]

[./interior_pressure_z]
    type = Pressure
    variable = disp_z
    boundary = inner
    component = 2
    function = '100000*t'
  [../]

[]

[Debug]
    show_var_residual_norms = true
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '  201               hypre    boomeramg      10'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

  start_time = 0.0
  end_time = 0.2
  dt = 0.1

[]

[Postprocessors]
  [./strainTheta]
    type = ElementAverageValue
    variable = strain_theta
  [../]
  [./stressTheta]
    type = ElementAverageValue
    variable = stress_theta
  [../]
  [./stressTheta_pt]
    type = PointValue
    point = '5.0 0.0 0.0'
    #bottom inside edge for comparison to theory; use csv = true
    variable = stress_theta
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform_cosserat3.i

# Plastic deformation.  Layered Cosserat with parameters:
# Young = 10.0
# Poisson = 0.25
# layer_thickness = 10
# joint_normal_stiffness = 2.5
# joint_shear_stiffness = 2.0
# These give the following nonzero components of the elasticity tensor:
# E_0000 = E_1111 = 1.156756756757E+01
# E_0011 = E_1100 = 3.855855855856E+00
# E_2222 = E_pp = 8.108108108108E+00
# E_0022 = E_1122 = E_2200 = E_2211 = 2.702702702703E+00
# G = E_0101 = E_0110 = E_1001 = E_1010 = 4
# Gt = E_qq = E_0202 = E_0220 = E_2002 = E_1212 = E_1221 = E_2112 = 3.333333333333E+00
# E_2020 = E_2121 = 3.666666666667E+00
# They give the following nonzero components of the bending rigidity tensor:
# D = 8.888888888889E+02
# B_0101 = B_1010 = 8.080808080808E+00
# B_0110 = B_1001 = -2.020202020202E+00
#
# Applying the following deformation to the zmax surface of a unit cube:
# disp_x = 32*t/Gt
# disp_y = 24*t/Gt
# disp_z = 10*t/E_2222
# omega_x = omega_y = omega_z = 0
# yields the following strains:
# strain_xz = 32*t/Gt = 9.6*t
# strain_yz = 24*t/Gt = 7.2*t
# strain_zz = 10*t/E_2222 = 1.23333333*t
# and all other components, and the curvature, are zero.
# The nonzero components of stress are therefore:
# stress_xx = stress_yy = 3.33333*t
# stress_xz = stress_zx = 32*t
# stress_yz = stress_zy = 24*t
# stress_zz = 10*t
# The moment stress is zero.
# So q = 40*t and p = 10*t
#
# Use tan(friction_angle) = 0.5 and tan(dilation_angle) = E_qq/Epp/2, and cohesion=20,
# the system should return to p=0, q=20, ie stress_zz=0, stress_xz=16,
# stress_yz=12 on the first time step (t=1)
# and
# stress_xx = stress_yy = 0
# and
# stress_zx = 32, and stress_zy = 24.
# Although this has resulted in a non-symmetric stress tensor, the
# moments generated are cancelled by the boundary conditions on
# omega_x and omega_y.  (Removing these boundary conditions results
# in a symmetric stress tensor, and some omega!=0 being generated.)
# No moment stresses are generated because omega=0=curvature.
#
# The total strains are given above (strain_xz = 9.6,
# strain_yz = 7.2 and strain_zz = 1.23333).
# Since q returned from 40 to 20, plastic_strain_xz = strain_xz/2 = 4.8
# and plastic_strain_yz = strain_yz/2 = 3.6.
# Since p returned to zero, all of the total strain_zz is
# plastic, ie plastic_strain_zz = 1.23333
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./bottom_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = back
    value = 0.0
  [../]
  [./bottom_wc_y]
    type = DirichletBC
    variable = wc_y
    boundary = back
    value = 0.0
  [../]


  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 32*t/3.333333333333E+00
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 24*t/3.333333333333E+00
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 10*t/8.108108108108E+00
  [../]
  [./top_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = front
    value = 0.0
  [../]
  [./top_wc_y]
    type = DirichletBC
    variable = wc_y
    boundary = front
    value = 0.0
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yx
    index_i = 1
    index_j = 0
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zx
    index_i = 2
    index_j = 0
  [../]
  [./strainp_zy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zy
    index_i = 2
    index_j = 1
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
  [./straint_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xx
    index_i = 0
    index_j = 0
  [../]
  [./straint_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xy
    index_i = 0
    index_j = 1
  [../]
  [./straint_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xz
    index_i = 0
    index_j = 2
  [../]
  [./straint_yx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yx
    index_i = 1
    index_j = 0
  [../]
  [./straint_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yy
    index_i = 1
    index_j = 1
  [../]
  [./straint_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yz
    index_i = 1
    index_j = 2
  [../]
  [./straint_zx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zx
    index_i = 2
    index_j = 0
  [../]
  [./straint_zy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zy
    index_i = 2
    index_j = 1
  [../]
  [./straint_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zz
    index_i = 2
    index_j = 2
  [../]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yx]
    type = PointValue
    point = '0 0 0'
    variable = stress_yx
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zx]
    type = PointValue
    point = '0 0 0'
    variable = stress_zx
  [../]
  [./s_zy]
    type = PointValue
    point = '0 0 0'
    variable = stress_zy
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./c_s_xx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xx
  [../]
  [./c_s_xy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xy
  [../]
  [./c_s_xz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_xz
  [../]
  [./c_s_yx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yx
  [../]
  [./c_s_yy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yy
  [../]
  [./c_s_yz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_yz
  [../]
  [./c_s_zx]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zx
  [../]
  [./c_s_zy]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zy
  [../]
  [./c_s_zz]
    type = PointValue
    point = '0 0 0'
    variable = couple_stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_xz
  [../]
  [./strainp_yx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yx
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_yz
  [../]
  [./strainp_zx]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zx
  [../]
  [./strainp_zy]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zy
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = strainp_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = straint_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = straint_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = straint_xz
  [../]
  [./straint_yx]
    type = PointValue
    point = '0 0 0'
    variable = straint_yx
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = straint_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = straint_yz
  [../]
  [./straint_zx]
    type = PointValue
    point = '0 0 0'
    variable = straint_zx
  [../]
  [./straint_zy]
    type = PointValue
    point = '0 0 0'
    variable = straint_zy
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = straint_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 20
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 2.055555555556E-01
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 10.0
    poisson = 0.25
    layer_thickness = 10.0
    joint_normal_stiffness = 2.5
    joint_shear_stiffness = 2.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
  [../]
  [./admissible]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneCosseratStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform_cosserat3
  csv = true
[]

modules/phase_field/examples/cahn-hilliard/Parsed_CH.i

#
# Example problem showing how to use the DerivativeParsedMaterial with CahnHilliard.
# The free energy is identical to that from CHMath, f_bulk = 1/4*(1-c)^2*(1+c)^2.
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 100
  xmax = 60
  ymax = 60
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./c]
        free_energy = fbulk
        mobility = M
        kappa = kappa_c
        solve_type = DIRECT
      [../]
    [../]
  [../]
[]

[AuxVariables]
  [./local_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[ICs]
  [./cIC]
    type = RandomIC
    variable = c
    min = -0.1
    max =  0.1
  [../]
[]

[AuxKernels]
  [./local_energy]
    type = TotalFreeEnergy
    variable = local_energy
    f_name = fbulk
    interfacial_vars = c
    kappa_names = kappa_c
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./mat]
    type = GenericConstantMaterial
    prop_names  = 'M   kappa_c'
    prop_values = '1.0 0.5'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = fbulk
    args = c
    constant_names = W
    constant_expressions = 1.0/2^2
    function = W*(1-c)^2*(1+c)^2
    enable_jit = true
  [../]
[]

[Postprocessors]
  [./top]
    type = SideIntegralVariablePostprocessor
    variable = c
    boundary = top
  [../]
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    variable = local_energy
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  scheme = bdf2

  # Alternative preconditioning using the additive Schwartz method and LU decomposition
  #petsc_options_iname = '-pc_type -sub_ksp_type -sub_pc_type'
  #petsc_options_value = 'asm      preonly       lu          '

  # Preconditioning options using Hypre (algebraic multi-grid)
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre    boomeramg'

  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 20
  nl_rel_tol = 1e-9

  dt = 2.0
  end_time = 20.0
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

test/tests/multiapps/transient_multiapp/dt_from_multi.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1 # This will be constrained by the multiapp

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    positions = '0 0 0  0.5 0.5 0  0.6 0.6 0  0.7 0.7 0'
    type = TransientMultiApp
    input_files = 'dt_from_multi_sub.i'
    app_type = MooseTestApp
  [../]
[]

test/tests/multiapps/detect_steady_state/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  xmax = 10
  ymax = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = sub.i
    sub_cycling = true
    steady_state_tol = 1e-5
    detect_steady_state = true
  [../]
[]

test/tests/auxkernels/solution_aux/solution_aux_exodus_interp_restart1.i

[Mesh]
  # This test uses SolutionUserObject which doesn't work with DistributedMesh.
  type = FileMesh
  file = cubesource.e
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./nn]
    type = SolutionAux
    variable = nn
    solution = soln
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = cubesource.e
    system_variables = source_nodal
    execute_on = 'initial timestep_begin'
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 5
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  checkpoint = true
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking_deprecated.i

#
# Simple pull test for cracking.
# The stress increases for two steps and then drops to zero.

[Mesh]
  file = cracking_test.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./displ]
    type = PiecewiseLinear
    x = '0 1 2 3  4'
    y = '0 1 0 -1 0'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[BCs]
  [./pull]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = displ
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.8e7
    poissons_ratio = 0
  [../]
  [./elastic_stress]
    type = ComputeSmearedCrackingStress
    cracking_stress = 1.68e6
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -sub_pc_type'
  petsc_options_value = '101                asm      lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-5
  start_time = 0.0
  end_time = 0.1
  dt = 0.025
[]

[Outputs]
  exodus = true
  file_base = cracking_out
[]

modules/porous_flow/examples/coal_mining/fine_with_fluid.i

#################################################################
#
#  NOTE:
#  The mesh for this model is too large for the MOOSE repository
#  so is kept in the the large_media submodule
#
#################################################################
#
# Strata deformation and fluid flow aaround a coal mine - 3D model
#
# A "half model" is used.  The mine is 400m deep and
# just the roof is studied (-400<=z<=0).  The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long.  The outer boundaries
# are 1km from the excavation boundaries.
#
# The excavation takes 0.5 years.
#
# The boundary conditions for this simulation are:
#  - disp_x = 0 at x=0 and x=1150
#  - disp_y = 0 at y=-1000 and y=1000
#  - disp_z = 0 at z=-400, but there is a time-dependent
#               Young modulus that simulates excavation
#  - wc_x = 0 at y=-1000 and y=1000
#  - wc_y = 0 at x=0 and x=1150
#  - no flow at x=0, z=-400 and z=0
#  - fixed porepressure at y=-1000, y=1000 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# A single-phase unsaturated fluid is used.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa, and time units are measured in years.
#
# The initial porepressure is hydrostatic with P=0 at z=0, so
# Porepressure ~ - 0.01*z MPa, where the fluid has density 1E3 kg/m^3 and
# gravity = = 10 m.s^-2 = 1E-5 MPa m^2/kg.
# To be more accurate, i use
# Porepressure = -bulk * log(1 + g*rho0*z/bulk)
# where bulk=2E3 MPa and rho0=1Ee kg/m^3.
# The initial stress is consistent with the weight force from undrained
# density 2500 kg/m^3, and fluid porepressure, and a Biot coefficient of 0.7, ie,
# stress_zz^effective = 0.025*z + 0.7 * initial_porepressure
# The maximum and minimum principal horizontal effective stresses are
# assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 2 MPa
# MC friction angle = 35 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
# Fluid density at zero porepressure = 1E3 kg/m^3
# Fluid bulk modulus = 2E3 MPa
# Fluid viscosity = 1.1E-3 Pa.s = 1.1E-9 MPa.s = 3.5E-17 MPa.year
#
[GlobalParams]
  perform_finite_strain_rotations = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
  PorousFlowDictator = dictator
  biot_coefficient = 0.7
[]

[Mesh]
  [file]
    type = FileMeshGenerator
    file = fine.e
  []
  [./xmin]
    type = SideSetsAroundSubdomainGenerator
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    new_boundary = xmin
    normal = '-1 0 0'
    input = file
  [../]
  [./xmax]
    type = SideSetsAroundSubdomainGenerator
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    new_boundary = xmax
    normal = '1 0 0'
    input = xmin
  [../]
  [./ymin]
    type = SideSetsAroundSubdomainGenerator
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    new_boundary = ymin
    normal = '0 -1 0'
    input = xmax
  [../]
  [./ymax]
    type = SideSetsAroundSubdomainGenerator
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    new_boundary = ymax
    normal = '0 1 0'
    input = ymin
  [../]
  [./zmax]
    type = SideSetsAroundSubdomainGenerator
    block = 30
    new_boundary = zmax
    normal = '0 0 1'
    input = ymax
  [../]
  [./zmin]
    type = SideSetsAroundSubdomainGenerator
    block = 2
    new_boundary = zmin
    normal = '0 0 -1'
    input = zmax
  [../]
  [./excav]
    type = SubdomainBoundingBoxGenerator
    input = zmin
    block_id = 1
    bottom_left = '0 0 -400'
    top_right = '150 1000 -397'
  [../]
  [./roof]
    type = SideSetsBetweenSubdomainsGenerator
    master_block = 3
    paired_block = 1
    input = excav
    new_boundary = roof
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./porepressure]
    scaling = 1E-5
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = ini_pp
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_y
    component = 1
  [../]
  [./gravity]
    type = Gravity
    use_displaced_mesh = false
    variable = disp_z
    value = -10E-6 # remember this is in MPa
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    use_displaced_mesh = false
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    use_displaced_mesh = false
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    use_displaced_mesh = false
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    variable = porepressure
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    use_displaced_mesh = false
    fluid_component = 0
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    use_displaced_mesh = false
    variable = porepressure
    gravity = '0 0 -10E-6'
    fluid_component = 0
  [../]
[]


[AuxVariables]
  [./saturation]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./darcy_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./darcy_y]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./darcy_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./darcy_x]
    type = PorousFlowDarcyVelocityComponent
    variable = darcy_x
    gravity = '0 0 -10E-6'
    component = x
  [../]
  [./darcy_y]
    type = PorousFlowDarcyVelocityComponent
    variable = darcy_y
    gravity = '0 0 -10E-6'
    component = y
  [../]
  [./darcy_z]
    type = PorousFlowDarcyVelocityComponent
    variable = darcy_z
    gravity = '0 0 -10E-6'
    component = z
  [../]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
    execute_on = timestep_end
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
    execute_on = timestep_end
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
    execute_on = timestep_end
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./total_strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./total_strain_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./total_strain_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_xz
    index_i = 0
    index_j = 2
    execute_on = timestep_end
  [../]
  [./total_strain_yx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_yx
    index_i = 1
    index_j = 0
    execute_on = timestep_end
  [../]
  [./total_strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./total_strain_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_yz
    index_i = 1
    index_j = 2
    execute_on = timestep_end
  [../]
  [./total_strain_zx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_zx
    index_i = 2
    index_j = 0
    execute_on = timestep_end
  [../]
  [./total_strain_zy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_zy
    index_i = 2
    index_j = 1
    execute_on = timestep_end
  [../]
  [./total_strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./perm_xx]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_xx
    row = 0
    column = 0
    execute_on = timestep_end
  [../]
  [./perm_yy]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_yy
    row = 1
    column = 1
    execute_on = timestep_end
  [../]
  [./perm_zz]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_zz
    row = 2
    column = 2
    execute_on = timestep_end
  [../]
  [./mc_shear]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_internal_parameter
    variable = mc_shear
    execute_on = timestep_end
  [../]
  [./mc_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = mc_plastic_internal_parameter
    variable = mc_tensile
    execute_on = timestep_end
  [../]
  [./wp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_internal_parameter
    variable = wp_shear
    execute_on = timestep_end
  [../]
  [./wp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_internal_parameter
    variable = wp_tensile
    execute_on = timestep_end
  [../]
  [./mc_shear_f]
    type = MaterialStdVectorAux
    index = 6
    property = mc_plastic_yield_function
    variable = mc_shear_f
    execute_on = timestep_end
  [../]
  [./mc_tensile_f]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_yield_function
    variable = mc_tensile_f
    execute_on = timestep_end
  [../]
  [./wp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_yield_function
    variable = wp_shear_f
    execute_on = timestep_end
  [../]
  [./wp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_yield_function
    variable = wp_tensile_f
    execute_on = timestep_end
  [../]
[]



[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'xmin xmax'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'ymin ymax'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = zmin
    value = 0.0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = 'ymin ymax'
    value = 0.0
  [../]
  [./no_wc_y]
    type = DirichletBC
    variable = wc_y
    boundary = 'xmin xmax'
    value = 0.0
  [../]
  [./fix_porepressure]
    type = FunctionDirichletBC
    variable = porepressure
    boundary = 'ymin ymax xmax'
    function = ini_pp
  [../]
  [./roof_porepressure]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    pt_vals = '-1E3 1E3'
    multipliers = '-1 1'
    fluid_phase = 0
    flux_function = roof_conductance
    boundary = roof
  [../]
  [./roof]
    type = StickyBC
    variable = disp_z
    min_value = -3.0
    boundary = roof
  [../]
[]

[Functions]
  [./ini_pp]
    type = ParsedFunction
    vars = 'bulk p0 g    rho0'
    vals = '2E3 0.0 1E-5 1E3'
    value = '-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)'
  [../]
  [./ini_xx]
    type = ParsedFunction
    vars = 'bulk p0 g    rho0 biot'
    vals = '2E3 0.0 1E-5 1E3  0.7'
    value = '0.8*(2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk)))'
  [../]
  [./ini_zz]
    type = ParsedFunction
    vars = 'bulk p0 g    rho0 biot'
    vals = '2E3 0.0 1E-5 1E3  0.7'
    value = '2500*10E-6*z+biot*(-bulk*log(exp(-p0/bulk)+g*rho0*z/bulk))'
  [../]
  [./excav_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval slope'
    vals = '0.5   0    1000.0 1E-9 1 10'
    # excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
    # slope is the distance over which the modulus reduces from maxval to minval
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
  [../]
  [./density_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval'
    vals = '0.5   0    1000.0 0 2500'
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
  [../]
  [./roof_conductance]
    type = ParsedFunction
    vars = 'end_t ymin ymax   maxval minval'
    vals = '0.5   0    1000.0 1E7      0'
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),maxval,minval)'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1 # MPa^-1
  [../]

  [./mc_coh_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.99 # MPa
    value_residual = 2.01 # MPa
    rate = 1.0
  [../]
  [./mc_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.61 # 35deg
  [../]
  [./mc_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.15 # 8deg
  [../]

  [./mc_tensile_str_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0 # MPa
    value_residual = 1.0 # MPa
    rate = 1.0
  [../]
  [./mc_compressive_str]
    type = TensorMechanicsHardeningCubic
    value_0 = 100 # Large!
    value_residual = 100
    internal_limit = 0.1
  [../]

  [./wp_coh_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.05
    value_residual = 0.05
    internal_limit = 10
  [../]
  [./wp_tan_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.26 # 15deg
  [../]
  [./wp_tan_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.18 # 10deg
  [../]

  [./wp_tensile_str_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.05
    value_residual = 0.05
    internal_limit = 10
  [../]
  [./wp_compressive_str_soften]
    type = TensorMechanicsHardeningCubic
    value_0 = 100
    value_residual = 1
    internal_limit = 1.0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E3
      density0 = 1000
      thermal_expansion = 0
      viscosity = 3.5E-17
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity_for_aux]
    type = PorousFlowPorosity
    at_nodes = false
    fluid = true
    mechanical = true
    ensure_positive = true
    porosity_zero = 0.02
    solid_bulk = 5.3333E3
  [../]
  [./porosity_bulk]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    ensure_positive = true
    porosity_zero = 0.02
    solid_bulk = 5.3333E3
  [../]
  [./porosity_excav]
    type = PorousFlowPorosityConst
    block = 1
    porosity = 1.0
  [../]
  [./permeability_bulk]
    type = PorousFlowPermeabilityKozenyCarman
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    poroperm_function = kozeny_carman_phi0
    k0 = 1E-15
    phi0 = 0.02
    n = 2
    m = 2
  [../]
  [./permeability_excav]
    type = PorousFlowPermeabilityConst
    block = 1
    permeability = '0 0 0   0 0 0   0 0 0'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 4
    s_res = 0.4
    sum_s_res = 0.4
    phase = 0
  [../]

  [./elasticity_tensor_0]
    type = ComputeLayeredCosseratElasticityTensor
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
  [../]
  [./elasticity_tensor_1]
    type = ComputeLayeredCosseratElasticityTensor
    block = 1
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
    elasticity_tensor_prefactor = excav_sideways
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    eigenstrain_name = ini_stress
    initial_stress = 'ini_xx 0 0  0 ini_xx 0  0 0 ini_zz'
  [../]

  [./stress_0]
    type = ComputeMultipleInelasticCosseratStress
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    inelastic_models = 'mc wp'
    cycle_models = true
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./stress_1]
    type = ComputeMultipleInelasticCosseratStress
    block = 1
    inelastic_models = ''
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedMohrCoulombCosseratStressUpdate
    warn_about_precision_loss = false
    host_youngs_modulus = 8E3
    host_poissons_ratio = 0.25
    base_name = mc
    tensile_strength = mc_tensile_str_strong_harden
    compressive_strength = mc_compressive_str
    cohesion = mc_coh_strong_harden
    friction_angle = mc_fric
    dilation_angle = mc_dil
    max_NR_iterations = 100000
    smoothing_tol = 0.1 # MPa  # Must be linked to cohesion
    yield_function_tol = 1E-9 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    warn_about_precision_loss = false
    base_name = wp
    cohesion = wp_coh_harden
    tan_friction_angle = wp_tan_fric
    tan_dilation_angle = wp_tan_dil
    tensile_strength = wp_tensile_str_harden
    compressive_strength = wp_compressive_str_soften
    max_NR_iterations = 10000
    tip_smoother = 0.05
    smoothing_tol = 0.05 # MPa  # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0E-3
  [../]


  [./undrained_density_0]
    type = GenericConstantMaterial
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    prop_names = density
    prop_values = 2500
  [../]
  [./undrained_density_1]
    type = GenericFunctionMaterial
    block = 1
    prop_names = density
    prop_values = density_sideways
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Postprocessors]
  [./min_roof_disp]
    type = NodalExtremeValue
    boundary = roof
    value_type = min
    variable = disp_z
  [../]
  [./min_roof_pp]
    type = NodalExtremeValue
    boundary = roof
    value_type = min
    variable = porepressure
  [../]
  [./min_surface_disp]
    type = NodalExtremeValue
    boundary = zmax
    value_type = min
    variable = disp_z
  [../]
  [./min_surface_pp]
    type = NodalExtremeValue
    boundary = zmax
    value_type = min
    variable = porepressure
  [../]
  [./max_perm_zz]
    type = ElementExtremeValue
     block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30'
    variable = perm_zz
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options = '-snes_converged_reason'

  # best overall
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = ' lu       mumps'

  # best if you don't have mumps:
  #petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  #petsc_options_value = ' asm      2              lu            gmres     200'

  # very basic:
  #petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
  #petsc_options_value = ' bjacobi  gmres     200'

  line_search = bt

  nl_abs_tol = 1e-3
  nl_rel_tol = 1e-5

  l_max_its = 200
  nl_max_its = 30

  start_time = 0.0
  dt = 0.0025
  end_time = 0.5
[]

[Outputs]
  interval = 1
  print_linear_residuals = true
  exodus = true
  csv = true
  console = true
[]

modules/phase_field/test/tests/reconstruction/euler2rgb_no_grain_region.i

[Mesh]
  type = EBSDMesh
  filename = ebsd_small.txt
[]

[GlobalParams]
  op_num = 8
  var_name_base = gr
[]

[UserObjects]
  [./ebsd_reader]
    type = EBSDReader
    execute_on = initial
  [../]
  [./ebsd]
    type = PolycrystalEBSD
    coloring_algorithm = bt
    ebsd_reader = ebsd_reader
    phase = 2
    output_adjacency_matrix = true
  [../]
  [./grain_tracker]
    type = GrainTracker
    polycrystal_ic_uo = ebsd
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = ebsd
    [../]
  [../]
  [./void_phase]
    type = ReconPhaseVarIC
    variable = c
    ebsd_reader = ebsd_reader
    phase = 1
  [../]
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[AuxVariables]
#  active = 'c bnds'

  [./c]
  [../]
  [./bnds]
  [../]
  [./ebsd_numbers]
    family = MONOMIAL
    order = CONSTANT
  [../]

  # Note: Not active
  [./unique_grains]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./var_indices]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
    c = c
  [../]
[]

[AuxKernels]
#  active = 'BndsCalc'

  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./ebsd_numbers]
    type = EBSDReaderAvgDataAux
    data_name = feature_id
    ebsd_reader = ebsd_reader
    grain_tracker = grain_tracker
    variable = ebsd_numbers
    phase = 2
    execute_on = 'initial timestep_end'
  [../]

  # Note: Not active
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
    execute_on = 'initial timestep_end'
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
    execute_on = 'initial timestep_end'
  [../]
[]

[Modules]
  [./PhaseField]
    [./EulerAngles2RGB]
      crystal_structure = cubic
      grain_tracker = grain_tracker
      euler_angle_provider = ebsd_reader
      no_grain_color = '.1 .1 .1'
      phase = 2
    [../]
  [../]
[]

[Materials]
  [./bulk]
    type = GBEvolution
    block = 0
    T = 2273
    wGB = 10.0
    GBenergy = 1.58
    GBmob0 = 9.2124e-9
    Q = 2.77
    length_scale = 1.0e-6
    time_scale = 60.0
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap -ksp_grmres_restart '
  petsc_options_value = '   asm        lu            1               21'
  start_time = 0.0
  dt = 0.2
  num_steps = 1
[]

[Outputs]
  csv = true
  exodus = true
  execute_on = 'INITIAL TIMESTEP_END'
  perf_graph = true
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test9.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
    xmin = 0
    xmax = 4
    ymin = 0
    ymax = 4
  []

  [./SubdomainBoundingBox1]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '3 4 1'
  [../]
  [./ed0]
    type = BlockDeletionGenerator
    block_id = 1
    input = 'SubdomainBoundingBox1'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/2d_moving_penetration/pl_test4qtt.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.09
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.09
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test4qtt_out
  exodus = true
[]

modules/combined/test/tests/contact/sm/pressurePenalty_sm.i


[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = false
[]

[Mesh]
  file = pressure.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[Contact]
  [./m20_s10]
    master = 20
    slave = 10
    penalty = 1e8
    formulation = penalty
    tangential_tolerance = 1e-3
    tension_release = -1
    system = Constraint
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 5
    value = 0.0
  [../]

  [./Pressure]
    [./press]
      boundary = 7
      factor = 1e3
    [../]
  [../]

  [./down]
    type = DirichletBC
    variable = disp_y
    boundary = 8
    value = -2e-3
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
  [./stiffStuff2]
    type = Elastic
    block = 2

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-9

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/sliding_block/in_and_out/dirac/sm/frictionless_kinematic_sm.i

#  This is a benchmark test that checks Dirac based frictionless
#  contact using the kinematic method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2. The gold file is run
#  on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+6
    formulation = kinematic
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialMultiphase.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  xmin = -20
  xmax = 20
  ymin = -20
  ymax = 20
[]

[GlobalParams]
  op_num = 2
  var_name_base = etab
[]

[Variables]
  [./w]
  [../]
  [./etaa0]
  [../]
  [./etab0]
  [../]
  [./etab1]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]

  [./IC_etaa0]
    type = FunctionIC
    variable = etaa0
    function = ic_func_etaa0
  [../]
  [./IC_etab0]
    type = FunctionIC
    variable = etab0
    function = ic_func_etab0
  [../]
  [./IC_etab1]
    type = FunctionIC
    variable = etab1
    function = ic_func_etab1
  [../]
  [./IC_w]
    type = ConstantIC
    value = -0.05
    variable = w
  [../]
[]

[Functions]
  [./ic_func_etaa0]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2);0.5*(1.0-tanh((r-10.0)/sqrt(2.0)))'
  [../]
  [./ic_func_etab0]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2);0.5*(1.0+tanh((r-10)/sqrt(2.0)))*0.5*(1.0+tanh((y)/sqrt(2.0)))'
  [../]
  [./ic_func_etab1]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2);0.5*(1.0+tanh((r-10)/sqrt(2.0)))*0.5*(1.0-tanh((y)/sqrt(2.0)))'
  [../]
[]


[BCs]
[]

[Kernels]
# Order parameter eta_alpha0
  [./ACa0_bulk]
    type = ACGrGrMulti
    variable = etaa0
    v =           'etab0 etab1'
    gamma_names = 'gab   gab'
  [../]
  [./ACa0_sw]
    type = ACSwitching
    variable = etaa0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etab0 etab1 w'
  [../]
  [./ACa0_int]
    type = ACInterface
    variable = etaa0
    kappa_name = kappa
  [../]
  [./ea0_dot]
    type = TimeDerivative
    variable = etaa0
  [../]
# Order parameter eta_beta0
  [./ACb0_bulk]
    type = ACGrGrMulti
    variable = etab0
    v =           'etaa0 etab1'
    gamma_names = 'gab   gbb'
  [../]
  [./ACb0_sw]
    type = ACSwitching
    variable = etab0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etaa0 etab1 w'
  [../]
  [./ACb0_int]
    type = ACInterface
    variable = etab0
    kappa_name = kappa
  [../]
  [./eb0_dot]
    type = TimeDerivative
    variable = etab0
  [../]
# Order parameter eta_beta1
  [./ACb1_bulk]
    type = ACGrGrMulti
    variable = etab1
    v =           'etaa0 etab0'
    gamma_names = 'gab   gbb'
  [../]
  [./ACb1_sw]
    type = ACSwitching
    variable = etab1
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etaa0 etab0 w'
  [../]
  [./ACb1_int]
    type = ACInterface
    variable = etab1
    kappa_name = kappa
  [../]
  [./eb1_dot]
    type = TimeDerivative
    variable = etab1
  [../]
#Chemical potential
  [./w_dot]
    type = SusceptibilityTimeDerivative
    variable = w
    f_name = chi
    args = '' # in this case chi (the susceptibility) is simply a constant
  [../]
  [./Diffusion]
    type = MatDiffusion
    variable = w
    diffusivity = Dchi
    args = ''
  [../]
  [./coupled_etaa0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etaa0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0 etab1'
  [../]
  [./coupled_etab0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etab0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0 etab1'
  [../]
  [./coupled_etab1dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etab1
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0 etab1'
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

# enable_jit set to false in many materials to make this test start up faster.
# It is recommended to set enable_jit = true or just remove these lines for
# production runs with this model
[Materials]
  [./ha]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = ha
    all_etas = 'etaa0 etab0 etab1'
    phase_etas = 'etaa0'
  [../]
  [./hb]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = hb
    all_etas = 'etaa0 etab0 etab1'
    phase_etas = 'etab0 etab1'
  [../]
  [./omegaa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegaa
    material_property_names = 'Vm ka caeq'
    function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
    derivative_order = 2
    enable_jit = false
  [../]
  [./omegab]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegab
    material_property_names = 'Vm kb cbeq'
    function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq'
    derivative_order = 2
    enable_jit = false
  [../]
  [./rhoa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhoa
    material_property_names = 'Vm ka caeq'
    function = 'w/Vm^2/ka + caeq/Vm'
    derivative_order = 2
    enable_jit = false
  [../]
  [./rhob]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhob
    material_property_names = 'Vm kb cbeq'
    function = 'w/Vm^2/kb + cbeq/Vm'
    derivative_order = 2
    enable_jit = false
  [../]
  [./const]
    type = GenericConstantMaterial
    prop_names =  'kappa_c  kappa   L   D    chi  Vm   ka    caeq kb    cbeq  gab gbb mu'
    prop_values = '0        1       1.0 1.0  1.0  1.0  10.0  0.1  10.0  0.9   4.5 1.5 1.0'
  [../]
  [./Mobility]
    type = DerivativeParsedMaterial
    f_name = Dchi
    material_property_names = 'D chi'
    function = 'D*chi'
    derivative_order = 2
    enable_jit = false
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  lu           1'
  l_tol = 1.0e-3
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1e-8
  num_steps = 2
  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.1
  [../]

[]

[Outputs]
  exodus = true
[]

test/tests/misc/exception/parallel_exception_jacobian_transient.i

[Mesh]
  file = 2squares.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./exception]
    type = ExceptionKernel
    variable = u
    when = jacobian
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./time_deriv]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
  [./right2]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  dtmin = 0.005
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/gap_heat_transfer_htonly/planar_yz.i

# 1-D Gap Heat Transfer Test without mechanics
#
# This test exercises 1-D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of two element blocks in the y-z plane.  Each element block
# is a square. They sit next to one another with a unit between them.
#
# The conductivity of both blocks is set very large to achieve a uniform temperature
# across each block. The temperature of the far bottom boundary
# is ramped from 100 to 200 over one time unit.  The temperature of the far top
# boundary is held fixed at 100.
#
# A simple analytical solution is possible for the heat flux between the blocks:
#
# Flux = (T_left - T_right) * (gapK/gap_width)
#
# The gap conductivity is specified as 1, thus
#
# gapK(Tavg) = 1.0*Tavg
#
# The heat flux across the gap at time = 1 is then:
#
# Flux = 100 * (1.0/1.0) = 100
#
# For comparison, see results from the flux post processors.  These results
# are the same as for the unit 1-D gap heat transfer between two unit cubes.

[Mesh]
  [file]
    type = FileMeshGenerator
    file = simple_2D.e
  []
  [./rotate]
    type = TransformGenerator
    transform = ROTATE
    vector_value = '0 90 90'
    input = file
  [../]
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '100 200 200'
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_cond]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]


[BCs]
  [./temp_far_bottom]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]
  [./temp_far_top]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[AuxKernels]
  [./conductance]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_cond
    boundary = 2
  [../]
[]

[Materials]
  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 100000000.0
  [../]
  [./density]
    type = Density
    block = '1 2'
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'
  nl_rel_tol = 1e-12
  l_tol = 1e-3
  l_max_its = 100

  dt = 1e-1
  end_time = 1.0
[]

[Postprocessors]
  [./temp_bottom]
    type = SideAverageValue
    boundary = 2
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./temp_top]
    type = SideAverageValue
    boundary = 3
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./flux_bottom]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
    execute_on = 'initial timestep_end'
  [../]

  [./flux_top]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/t_stress/t_stress_crack_infinite_plate_2d.i

# T-stress test for a through crack in a wide ("infinite") plate.
# For a finer mesh this problem converges to the solution T = -sigma.
# Ref: T.L. Anderson, Fracture Mechanics: Fundamentals and Applications

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = crack_infinite_plate.e
  partitioner = centroid
  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -100
  [../]
[]

[DomainIntegral]
  integrals = 'JIntegral InteractionIntegralKI InteractionIntegralT'
  boundary = 1001
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '0.06 0.08 0.10'
  radius_outer = '0.08 0.10 0.12'
  block = 1
  youngs_modulus = 30e+6
  poissons_ratio = 0.3
  2d = true
  axis_2d = 2
  symmetry_plane = 1
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 300
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./Pressure]
    [./top]
      boundary = 200
      function = rampConstantUp
    [../]
  [../]
[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    formulation = NonlinearPlaneStrain
    youngs_modulus = 30e+6
    poissons_ratio = 0.3
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


#  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 3e-7
   nl_rel_tol = 1e-12
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = t_stress_crack_infinite_plate_out
  exodus = true
  csv = true
[]

modules/xfem/test/tests/moving_interface/verification/2D_xy_lsdep1mat.i

# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
# XFEM Moving Interface Verification Problem
# Dimensionality:                                         2D
# Coordinate System:                                      xy
# Material Numbers/Types: level set dep 1 material, 2 region
# Element Order:                                         1st
# Interface Characteristics: u independent, prescribed level set function
# Description:
#   Transient 2D heat transfer problem in Cartesian coordinates designed with
#   the Method of Manufactured Solutions. This problem was developed to verify
#   XFEM performance on linear elements in the presence of a moving interface
#   sweeping across the x-y coordinates of a system with thermal conductivity
#   dependent upon the transient level set function. This problem can be
#   exactly evaluated by FEM/Moose without the moving interface. Both the
#   temperature and level set function are designed to be linear to attempt to
#   minimize the error between the Moose/exact solution and XFEM results.
# Results:
#   The temperature at the bottom left boundary (x=0, y=0) exhibits the largest
#   difference between the FEM/Moose solution and XFEM results. We present the
#   XFEM results at this location with 10 digits of precision:
#     Time   Expected Temperature   XFEM Calculated Temperature
#      0.2                 440        440
#      0.4                 480        479.9998738
#      0.6                 520        519.9995114
#      0.8                 560        559.9989360
#      1.0                 600        599.9983833
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ #

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = moment_fitting
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
    heal_always = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./ls]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./heat_cond]
    type = MatDiffusion
    variable = u
    diffusivity = diffusion_coefficient
  [../]
  [./vol_heat_src]
    type = BodyForce
    variable = u
    function = src_func
  [../]
  [./mat_time_deriv]
    type = TestMatTimeDerivative
    variable = u
    mat_prop_value = rhoCp
  [../]
[]

[AuxKernels]
  [./ls_function]
    type = FunctionAux
    variable = ls
    function = ls_func
  [../]
[]

[Constraints]
  [./xfem_constraints]
    type = XFEMSingleVariableConstraint
    variable = u
    geometric_cut_userobject = 'level_set_cut_uo'
    use_penalty = true
    alpha = 1e5
  [../]
[]

[Functions]
  [./src_func]
    type = ParsedFunction
    value = '10*(-100*x-100*y+200)-(5*t/1.04)'
  [../]
  [./neumann_func]
    type = ParsedFunction
    value = '((0.01/1.04)*(-2.5*x-2.5*y-t)+1.55)*100*t'
  [../]
  [./dirichlet_right_func]
    type = ParsedFunction
    value = '(-100*y+100)*t+400'
  [../]
  [./dirichlet_top_func]
    type = ParsedFunction
    value = '(-100*x+100)*t+400'
  [../]
  [./k_func]
    type = ParsedFunction
    value = '(0.01/1.04)*(-2.5*x-2.5*y-t)+1.55'
  [../]
  [./ls_func]
    type = ParsedFunction
    value = '-0.5*(x+y) + 1.04 -0.2*t'
  [../]
[]

[Materials]
  [./mat_time_deriv_prop]
    type = GenericConstantMaterial
    prop_names = 'rhoCp'
    prop_values = 10
  [../]
  [./therm_cond_prop]
    type = GenericFunctionMaterial
    prop_names = 'diffusion_coefficient'
    prop_values = 'k_func'
  [../]
[]

[BCs]
  [./left_du]
    type = FunctionNeumannBC
    variable = u
    boundary = 'left'
    function = neumann_func
  [../]
  [./right_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 'right'
    function = dirichlet_right_func
  [../]
  [./bottom_du]
    type = FunctionNeumannBC
    variable = u
    boundary = 'bottom'
    function = neumann_func
  [../]
  [./top_u]
    type = FunctionDirichletBC
    variable = u
    boundary = 'top'
    function = dirichlet_top_func
  [../]
[]

[ICs]
  [./u_ic]
    type = ConstantIC
    value = 400
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_tol = 1.0e-6
  nl_max_its = 15
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-9

  start_time = 0.0
  dt = 0.2
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = 'initial timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/phase_field/test/tests/phase_field_crystal/PFCRFF/PFCRFF_cancelation_test.i

[GlobalParams]
  num_L = 5
  L_name_base = L
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 12
  ny = 12
  xmax = 6
  ymax = 6
[]

[Variables]
  [./PFCRFFVariables]
  [../]
  [./n]
    [./InitialCondition]
      type = RandomIC
      max = 0.8
      min = .2
      seed = 12345
    [../]
  [../]
[]

[Kernels]
  [./PFCRFFKernel]
    n_name = n
    log_approach = cancelation
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./PFC]
    type = PFCRFFMaterial
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Preconditioning]
  active = 'SMP'
  [./SMP]
    type = SMP
    full = true
  [../]
  [./FDP]
    type = FDP
    full = true
  [../]
[]

[Executioner]
  # petsc_options = '-snes_mf_operator -ksp_monitor'
  # petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  # petsc_options_value = 'hypre boomeramg 31'
  # petsc_options_iname = -pc_type
  # petsc_options_value = lu
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         101   preonly   lu      5'
  type = Transient
  num_steps = 1
  dt = 0.1
  l_max_its = 50
  nl_max_its = 20
  solve_type = NEWTON
  l_tol = 1e-04
  nl_rel_tol = 1e-9
  scheme = bdf2
[]

[Outputs]
  exodus = true
[]

[ICs]
  active = ''
  [./density_IC]
    y2 = 10.5
    lc = 6
    y1 = 1.5
    min = .8
    max = .2
    x2 = 10.5
    crystal_structure = FCC
    variable = n
    x1 = 1.5
    type = PFCFreezingIC
  [../]
[]

modules/tensor_mechanics/test/tests/dynamics/wave_1D/wave_rayleigh_newmark.i

# Wave propogation in 1D using Newmark time integration in the presence of Rayleigh damping
#
# The test is for an 1D bar element of length 4m  fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the other end.
# beta and gamma are Newmark  time integration parameters
# eta and zeta are mass dependent and stiffness dependent Rayleigh damping
# coefficients, respectively.
# The equation of motion in terms of matrices is:
#
# M*accel + (eta*M+zeta*K)*vel +K*disp = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# The displacement at the second, third and fourth node at t = 0.1 are
# -7.776268399030435152e-02, 1.949967184623528985e-02 and -4.615737877580032046e-03, respectively

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./DynamicTensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    zeta = 0.1
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.3025
    gamma = 0.6
    eta=0.1
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.3025
    gamma = 0.6
    eta=0.1
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.3025
    gamma = 0.6
    eta = 0.1
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.3025
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.6
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 0
    index_j = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
    type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = bottom
    function = displacement_bc
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1'
  [../]

[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 6.0
  l_tol = 1e-12
  nl_rel_tol = 1e-12
  dt = 0.1
[]


[Functions]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp_1]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_2]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./disp_3]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./disp_4]
    type = NodalVariableValue
    nodeid = 14
    variable = disp_y
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/porous_flow/test/tests/aux_kernels/darcy_velocity_lower.i

# checking that the PorousFlowDarcyVelocityComponentLowerDimensional AuxKernel works as expected
# for the fully-saturated case (relative-permeability = 1)
# The fractured_block.e has size = 10x10x10, and a fracturing running through its
# centre, with normal = (0, -sin(20deg), cos(20deg))
# Porepressure is initialised to grad(P) = (0, 0, 1)
# Fluid_density = 2
# viscosity = 10
# relative_permeability = 1
# permeability = (5, 5, 5)  (in the bulk)
# permeability = (10, 10, 10)   (in the fracture)
# aperture = 1
# gravity = (1, 0.5, 0.2)
# So Darcy velocity in the bulk = (1, 0.5, -0.3)
# in the fracture grad(P) = (0, 0.3213938, 0.11697778)
# In the fracture the projected gravity vector is
# tangential_gravity = (1, 0.5057899, 0.18409245)
# So the Darcy velocity in the fracture = (2, 0.690186, 0.251207)

[Mesh]
  type = FileMesh
  file = fractured_block.e
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '1 0.5 0.2'
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pinit]
    type = FunctionIC
    function = z
    variable = pp
  [../]
[]

[Kernels]
  [./dummy]
    type = TimeDerivative
    variable = pp
  [../]
[]

[AuxVariables]
  [./bulk_vel_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./bulk_vel_y]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./bulk_vel_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fracture_vel_x]
    order = CONSTANT
    family = MONOMIAL
    block = 3
  [../]
  [./fracture_vel_y]
    order = CONSTANT
    family = MONOMIAL
    block = 3
  [../]
  [./fracture_vel_z]
    order = CONSTANT
    family = MONOMIAL
    block = 3
  [../]
[]

[AuxKernels]
  [./bulk_vel_x]
    type = PorousFlowDarcyVelocityComponent
    variable = bulk_vel_x
    component = x
    fluid_phase = 0
  [../]
  [./bulk_vel_y]
    type = PorousFlowDarcyVelocityComponent
    variable = bulk_vel_y
    component = y
    fluid_phase = 0
  [../]
  [./bulk_vel_z]
    type = PorousFlowDarcyVelocityComponent
    variable = bulk_vel_z
    component = z
    fluid_phase = 0
  [../]
  [./fracture_vel_x]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = fracture_vel_x
    component = x
    fluid_phase = 0
  [../]
  [./fracture_vel_y]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = fracture_vel_y
    component = y
    fluid_phase = 0
  [../]
  [./fracture_vel_z]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = fracture_vel_z
    component = z
    fluid_phase = 0
 [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1E16
      viscosity = 10
      density0 = 2
      thermal_expansion = 0
    [../]
  [../]
[]

[Postprocessors]
  [./bulk_vel_x]
    type = PointValue
    variable = bulk_vel_x
    point = '0 0 0'
  [../]
  [./bulk_vel_y]
    type = PointValue
    variable = bulk_vel_y
    point = '0 0 0'
  [../]
  [./bulk_vel_z]
    type = PointValue
    variable = bulk_vel_z
    point = '0 0 0'
  [../]
  [./fracture_vel_x]
    type = ElementAverageValue
    block = 3
    variable = fracture_vel_x
  [../]
  [./fracture_vel_y]
    type = ElementAverageValue
    block = 3
    variable = fracture_vel_y
  [../]
  [./fracture_vel_z]
    type = ElementAverageValue
    block = 3
    variable = fracture_vel_z
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '5 0 0 0 5 0 0 0 5'
    block = '1 2'
  [../]
  [./permeability_fracture]
    type = PorousFlowPermeabilityConst
    permeability = '10 0 0 0 10 0 0 0 10'
    block = 3
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/elastic_thermal_patch/elastic_thermal_patch_rz_sm.i

#
# This problem is modified from the Abaqus verification manual:
#   "1.5.4 Patch test for axisymmetric elements"
# The original stress solution is given as:
#   xx = yy = zz = 2000
#   xy = 400
#
# Here, E=1e6 and nu=0.25.
# However, with a +100 degree change in temperature and a coefficient
#   of thermal expansion of 1e-6, the solution becomes:
#   xx = yy = zz = 1800
#   xy = 400
#   since
#   E*(1-nu)/(1+nu)/(1-2*nu)*(1+2*nu/(1-nu))*(1e-3-1e-4) = 1800
#
# Also,
#
#   dSrr   dSrz   Srr-Stt
#   ---- + ---- + ------- + br = 0
#    dr     dz       r
#
# and
#
#   dSrz   Srz   dSzz
#   ---- + --- + ---- + bz = 0
#    dr     r     dz
#
# where
#   Srr = stress in rr
#   Szz = stress in zz
#   Stt = stress in theta-theta
#   Srz = stress in rz
#   br  = body force in r direction
#   bz  = body force in z direction
#

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_thermal_patch_rz_test.e
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '1e-3*x'
  [../]
  [./uz]
    type = ParsedFunction
    value = '1e-3*(x+y)'
  [../]
  [./body]
    type = ParsedFunction
    value = '-400/x'
  [../]
  [./temp]
    type = ParsedFunction
    value = '117.56+100*t'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Kernels]
  [./body]
    type = BodyForce
    variable = disp_y
    value = 1
    function = body
  [../]

  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = ur
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = uz
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = 10
    function = temp
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    lambda = 400000.0
    poissons_ratio = 0.25

    temp = temp
    thermal_expansion = 1e-6
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = 1

    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    block = 1
    density = 0.283
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-11
  nl_rel_tol = 1e-12

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[]

[Outputs]
  file_base = elastic_thermal_patch_rz_out
  exodus = true
[]

modules/misc/test/tests/dynamic_loading/dynamic_obj_registration/dynamic_wrong_lib.i

# This input file contains objects only available in phase_field
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 2
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 2
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 15.0
      x2 = 35.0
      y1 = 0.0
      y2 = 25.0
      inside = 1.0
      outside = -0.8
      variable = c
    [../]
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
    block = 0
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 101'
  l_max_its = 15
  nl_max_its = 10
  start_time = 0.0
  num_steps = 2
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

# Here we'll load the wrong library and check for the correct error condition
[Problem]
  register_objects_from = 'TensorMechanicsApp'
  library_path = '../../../../../tensor_mechanics/lib'
[]

modules/tensor_mechanics/test/tests/orthotropic_plasticity/powerRuleHardening.i

# UserObject Orthotropic test, with power rule hardening with rate 1e1.
# Linear strain is applied in the x direction.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin =  -.5
  xmax = .5
  ymin = -.5
  ymax = .5
  zmin = -.5
  zmax = .5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz'
  [../]
[]

[BCs]
  [./xdisp]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'right'
    function = '0.005*t'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    #boundary = 'bottom top'
    boundary = 'bottom'
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
  [./zfix]
    type = DirichletBC
    variable = disp_z
    #boundary = 'front back'
    boundary = 'back'
    value = 0
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sdev]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sdet]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./plastic_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xx
    index_i = 0
    index_j = 0
  [../]
  [./plastic_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xy
    index_i = 0
    index_j = 1
  [../]
  [./plastic_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_xz
    index_i = 0
    index_j = 2
  [../]
  [./plastic_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_yy
    index_i = 1
    index_j = 1
  [../]
  [./plastic_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_yz
    index_i = 1
    index_j = 2
  [../]
  [./plastic_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = intnl
  [../]
  [./sdev]
    type = RankTwoScalarAux
    variable = sdev
    rank_two_tensor = stress
    scalar_type = VonMisesStress
  [../]
[]

[Postprocessors]
  [./sdev]
    type = PointValue
    point = '0 0 0'
    variable = sdev
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./p_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./p_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xy
  [../]
  [./p_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_xz
  [../]
  [./p_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_yz
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./p_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./p_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_zz
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningPowerRule
    value_0 = 300
    epsilon0 = 1
    exponent = 1e1

  [../]
  [./Orthotropic]
    type = TensorMechanicsPlasticOrthotropic
    b = -0.1
    c1 = '1 1 1 1 1 1'
    c2 = '1 1 1 1 1 1'
    associative = true
    yield_strength = str
    yield_function_tolerance = 1e-5
    internal_constraint_tolerance = 1e-9
    use_custom_returnMap = false
    use_custom_cto = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '121e3 80e3'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1e-9
    plastic_models = Orthotropic
    debug_fspb = crash
    tangent_operator = elastic
  [../]
[]


[Executioner]
  type = Transient

  num_steps = 3
  dt = .25

  nl_rel_tol = 1e-6
  nl_max_its = 10
  l_tol = 1e-4
  l_max_its = 50

  solve_type = PJFNK
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  perf_graph = false
  csv = true
[]

test/tests/functions/piecewise_multilinear/except4.i

# PiecewiseMultilinear function exception test
# AXIS X encountered more than once

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 2
  nx = 1
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./f]
  [../]
[]

[AuxKernels]
  [./f_auxK]
    type = FunctionAux
    variable = f
    function = except4_fcn
  [../]
[]


[Functions]
  [./except4_fcn]
    type = PiecewiseMultilinear
    data_file = except4.txt
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  hide = dummy
[]

test/tests/misc/ad_robustness/ad_two_var_transient_diffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [v][]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = ADTimeDerivative
    variable = u
  [../]
  [coupled]
    type = ADCoupledValueTest
    variable = u
    v = v
  []
[]

[DGKernels]
  [dummy]
    type = ADDGCoupledTest
    variable = u
    v = v
  []
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

examples/ex16_timestepper/ex16.i

[Mesh]
  file = square.e
  uniform_refine = 4
[]

[Variables]
  [./convected]
    order = FIRST
    family = LAGRANGE
  [../]

  [./diffused]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./example_diff]
    type = ExampleDiffusion
    variable = convected
  [../]

  [./conv]
    type = ExampleConvection
    variable = convected
    some_variable = diffused
  [../]

  [./diff]
    type = Diffusion
    variable = diffused
  [../]

  [./euler]
    type = ExampleImplicitEuler
    variable = diffused
  [../]
[]

[BCs]
  [./left_convected]
    type = DirichletBC
    variable = convected
    boundary = 'left'
    value = 0
  [../]

  [./right_convected]
    type = DirichletBC
    variable = convected
    boundary = 'right'
    value = 1
  [../]

  [./left_diffused]
    type = DirichletBC
    variable = diffused
    boundary = 'left'
    value = 0
  [../]

  [./right_diffused]
    type = DirichletBC
    variable = diffused
    boundary = 'right'
    value = 1
  [../]
[]

[Materials]
  [./example]
    type = ExampleMaterial
    block = 1
    diffusivity = 0.5
    time_coefficient = 20.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  num_steps = 12

  # Use our custom TimeStepper
  [./TimeStepper]
    type = TransientHalf
    ratio = 0.5
    min_dt = 0.01
    dt = 1
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/richards/test/tests/sinks/s_fu_01.i

# with fully_upwind sink
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGstandard
  sat_UO = Saturation
  seff_UO = SeffVG
  fully_upwind = true
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.5
    al = 1 # same deal with PETSc constant state
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = initial_pressure
    [../]
  [../]
[]

[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 2
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((mi-lfout-rfout-mf)/2/(mi+mf))
    vars = 'mi mf lfout rfout'
    vals = 'mass_init mass_fin left_flux_out right_flux_out'
  [../]
[]

[Postprocessors]
  [./mass_init]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]
  [./mass_fin]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]
  [./left_flux_out]
    type = RichardsPiecewiseLinearSinkFlux
    boundary = left
    variable = pressure
    pressures = '0 1'
    bare_fluxes = '1 2'
    use_mobility = false
    use_relperm = false
  [../]
  [./right_flux_out]
    type = RichardsPiecewiseLinearSinkFlux
    boundary = right
    variable = pressure
    pressures = '0 1'
    bare_fluxes = '1 2'
    use_mobility = false
    use_relperm = false
  [../]
  [./p0]
    type = PointValue
    point = '0 0 0'
    variable = pressure
  [../]
  [./mass_bal]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = left
    pressures = '0 1'
    bare_fluxes = '1 2'
    variable = pressure
    use_mobility = false
    use_relperm = false
  [../]
  [./right_flux]
    type = RichardsPiecewiseLinearSink
    boundary = right
    pressures = '0 1'
    bare_fluxes = '1 2'
    variable = pressure
    use_mobility = false
    use_relperm = false
  [../]
[]

[Kernels]
  active = 'richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'andy'
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 2E-3
  end_time = 0.2
  nl_abs_tol = 1E-12
  nl_rel_tol = 1E-10
[]

[Outputs]
  file_base = s_fu_01
  csv = true
  execute_on = timestep_end
[]

modules/phase_field/test/tests/grain_growth/voronoi_columnar_3D.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 40
  ny = 40
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1000
  zmin = 0
  zmax = 25
  elem_type = HEX8
[]

[GlobalParams]
  op_num = 4
  var_name_base = gr
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 47
    grain_num = 4
    columnar_3D = true
    coloring_algorithm = bt
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 60 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Postprocessors]
  active = ''
  [./ngrains]
    type = FeatureFloodCount
    variable = bnds
    threshold = 0.7
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_tol = 1.0e-5
  l_max_its = 15
  nl_max_its = 20
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 1
  dt = 40.0
[]

[Outputs]
  exodus = true
[]

test/tests/dgkernels/1d_advection_dg/1d_advection_dg.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[Functions]
  [./ic_u]
    type = PiecewiseConstant
    axis = x
    direction = right
    xy_data = '0.1 0.0
               0.6 1.0
               1.0 0.0'
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./adv_u]
    implicit = false
    type = ConservativeAdvection
    variable = u
    velocity = '1 0 0'
  [../]
[]

[DGKernels]
  [./dg_advection_u]
    implicit = false
    type = DGConvection
    variable = u
    velocity = '1 0 0'
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    variable = u
    function = ic_u
  [../]
[]

[Executioner]
  type = Transient
  [./TimeIntegrator]
    type = ExplicitMidpoint
  [../]
  solve_type = 'LINEAR'
  num_steps = 4
  dt = 2e-4
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/gap_heat_transfer_htonly/cyl2D_xz.i

#
# 2D Cylindrical Gap Heat Transfer Test.
#
# This test exercises 2D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of an inner solid cylinder of radius = 1 unit, and outer
# hollow cylinder with an inner radius of 2 in the x-z plane. In other words,
# the gap between them is 1 radial unit in length.
#
# The calculated results are the same as for the cyl2D.i case in the x-y plane.

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  [file]
    type = FileMeshGenerator
    file = cyl2D.e
  []
  [./rotate]
    type = TransformGenerator
    transform = ROTATE
    vector_value = '0 90 0'
    input = file
  [../]
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1'
    y = '100 200'
  [../]
[]

[Variables]
  [./temp]
   initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_conductance]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat_conduction]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./gap_cond]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_conductance
    boundary = 2
  [../]
[]

[Materials]
  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 1000000.0
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
    gap_conductivity = 1
    quadrature = true
    gap_geometry_type = CYLINDER
    cylinder_axis_point_1 = '0 0 0'
    cylinder_axis_point_2 = '0 1 0'
  [../]
[]

[BCs]
  [./mid]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]
  [./temp_far_right]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  dt = 1
  dtmin = 0.01
  end_time = 1

  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-7

  [./Quadrature]
     order = fifth
     side_order = seventh
  [../]
[]

[Outputs]
  exodus = true
[]

[Postprocessors]
  [./temp_left]
    type = SideAverageValue
    boundary = 2
    variable = temp
  [../]

  [./temp_right]
    type = SideAverageValue
    boundary = 3
    variable = temp
  [../]

  [./flux_left]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
  [../]

  [./flux_right]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
  [../]
[]

test/tests/transfers/multiapp_projection_transfer/fixed_meshes_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 5
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_master]
  [../]
  [./elemental_from_master]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.01
  solve_type = NEWTON
[]

[Outputs]
  exodus = true
  #
[]

test/tests/multiapps/full_solve_multiapp/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update6.i

# MC update version, with only Tensile with tensile strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.
# Returns to the plane of tensile yield

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-1 0.1 0.2  0.1 15 -0.3  0.2 -0.3 0'
    eigenstrain_name = ini_stress
  [../]
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update2.i

# MC update version, with only Tensile with tensile strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Return to the stress_I = stress_II ~1 edge

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 0 0  0 0 0  0 0 2.01'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/porous_flow/test/tests/chemistry/2species_predis.i

# PorousFlow analogy of chemical_reactions/test/tests/solid_kinetics/2species_without_action.i
#
# Simple equilibrium reaction example to illustrate the use of PorousFlowAqueousPreDisChemistry
#
# In this example, two primary species a and b diffuse towards each other from
# opposite ends of a porous medium, reacting when they meet to form a mineral
# precipitate. The kinetic reaction is
#
# a + b = mineral
#
# where a and b are the primary species (reactants), and mineral is the precipitate.
# At the time of writing, the results of this test differ from chemical_reactions because
# in PorousFlow the mineral_concentration is measured in m^3 (precipitate) / m^3 (porous_material)
# in chemical_reactions the mineral_concentration is measured in m^3 (precipitate) / m^3 (fluid)
# ie, PorousFlow_mineral_concentration = porosity * chemical_reactions_mineral_concentration

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmax = 1
  ymax = 1
  nx = 40
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./pressure]
  [../]
  [./mineral]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./mineral]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = mineral
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Kernels]
  [./mass_a]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = a
  [../]
  [./diff_a]
    type = PorousFlowDispersiveFlux
    variable = a
    fluid_component = 0
    disp_trans = 0
    disp_long = 0
  [../]
  [./predis_a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1000
    stoichiometry = 1
  [../]
  [./mass_b]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = b
  [../]
  [./diff_b]
    type = PorousFlowDispersiveFlux
    variable = b
    fluid_component = 1
    disp_trans = 0
    disp_long = 0
  [../]
  [./predis_b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 1000
    stoichiometry = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9 # huge, so mimic chemical_reactions
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 298.15
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./chem]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    reactions = '1 1'
    specific_reactive_surface_area = '1.0'
    kinetic_rate_constant = '1.0e-8'
    activation_energy = '1.5e4'
    molar_volume = 1
    gas_constant = 8.314
    reference_temperature = 298.15
  [../]
  [./mineral_conc]
    type = PorousFlowAqueousPreDisMineral
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.4
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    # porous_flow permeability / porous_flow viscosity = chemical_reactions conductivity = 4E-3
    permeability = '4E-6 0 0 0 4E-6 0 0 0 4E-6'
  [../]
  [./relp]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
    # porous_flow diffusion_coeff * tortuousity * porosity = chemical_reactions diffusivity = 5E-4
    diffusion_coeff = '12.5E-4 12.5E-4 12.5E-4'
    tortuosity = 1.0
  [../]
[]

[BCs]
  [./a_left]
    type = DirichletBC
    variable = a
    boundary = left
    value = 1.0e-2
  [../]
  [./a_right]
    type = DirichletBC
    variable = a
    boundary = right
    value = 0
  [../]
  [./b_left]
    type = DirichletBC
    variable = b
    boundary = left
    value = 0
  [../]
  [./b_right]
    type = DirichletBC
    variable = b
    boundary = right
    value = 1.0e-2
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 5
  end_time = 50
[]

[Outputs]
  print_linear_residuals = true
  exodus = true
  perf_graph = true
[]

test/tests/functions/image_function/image_3d.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 20
  ny = 20
  nz = 20
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file_base = stack/test
    file_suffix = png
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[../]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/jacobian_2/jn_fu_05.i

# two phase
# unsaturated = true

# gravity = false
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFullyUpwindFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFullyUpwindFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = '1E-3 0.5E-3'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn05
  exodus = false
[]

modules/phase_field/test/tests/initial_conditions/TricrystalTripleJunctionIC.i

# This simulation tests the TricrystalTripleJunctionIC

[Mesh]
  # Mesh block. Meshes can be read in or automatically generated.
  type = GeneratedMesh
  dim = 2 # Problem dimension
  nx = 11 # Number of elements in the x direction
  ny = 11 # Number of elements in the y direction
  xmax = 1001 # Maximum x-coordinate of mesh
  xmin = 0 # Minimum x-coordinate of mesh
  ymax = 1001 # Maximum y-coordinate of mesh
  ymin = 0 # Minimum y-coordinate of mesh
  elem_type = QUAD4 # Type of elements used in the mesh
  uniform_refine = 3
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = 3 # Number of order parameters used
  var_name_base = gr # base name of grains
  v = 'gr0 gr1 gr2' # Names of the grains
  theta1 = 135 # Angle the first grain makes at the triple junction
  theta2 = 100 # Angle the second grain makes at the triple junction
  length_scale = 1.0e-9 # Length scale in nm
  time_scale = 1.0e-9 # Time scale in ns
[]

[Variables]
  [./gr0]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
       type = TricrystalTripleJunctionIC
       op_index = 1
    [../]
  [../]

  [./gr1]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
       type = TricrystalTripleJunctionIC
       op_index = 2
    [../]
  [../]

  [./gr2]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
       type = TricrystalTripleJunctionIC
       op_index = 3
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    # Variable used to visualize the grain boundaries in the simulation
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  # Kernels block where the kernels defining the residual equations are set up
  [./PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  [../]
[]

[AuxKernels]
  # AuxKernel block, defining the equations used to calculate the auxvars
  [./bnds_aux]
    # AuxKernel that calculates the GB term
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
[]

[Materials]
  [./material]
    # Material properties
    type = GBEvolution
    T = 450 # Constant temperature of the simulation (for mobility calculation)
    wGB = 14 # Width of the diffuse GB
    GBmob0 = 2.5e-6 #m^4(Js) for copper from Schoenfelder1997
    Q = 0.23 #eV for copper from Schoenfelder1997
    GBenergy = 0.708 #J/m^2 from Schoenfelder1997
  [../]
[]

[Postprocessors]
  # Scalar postprocessors
  [./grain_tracker]
    type = FauxGrainTracker
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  exodus = true # Outputs to the Exodus file format
  execute_on = 'final'
[]

[Problem]
  solve = false
[]

test/tests/controls/error/disable_executioner.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

[Controls]
  [./func_control]
    type = TestControl
    test_type = 'disable_executioner' # tests error
    parameter = 'Executioner::*/enable'
    execute_on = 'initial timestep_begin'
  [../]
[]

test/tests/test_harness/exodiff.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 10 # causes a diff
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4 # Gold file only has 4 steps
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
  exodus = true
  perf_graph = true
[]

modules/porous_flow/test/tests/dirackernels/strain_at_nearest_qp.i

# Demonstrates the correct usage of strain_at_nearest_qp when using a nodal PorousFlowPorosity
# For the PorousFlowPorosity Material to require the strain_at_nearest_qp=true flag, it must:
#  - be a nodal Material
#  - be coupled to solid mechanics (mechanical=true)
#  - be part of a simulation with DiracKernels
# The reason for this requirement is that the volumetric strain is a standard Material (at_nodes=false)
# so that it is evaluated at the single Dirac quadpoint, and has size = 1 (assuming just one Dirac point).
# However, the PorousFlowPorosity Material will have size = 2  (number of nodes in the element containing the Dirac point).
# So when the PorousFlowPorosity Material is evaluated, it will use _vol_strain at 2 points.
# If strain_at_nearest_qp=false, then _vol_strain will be evaluated at two quadpoints, but it only has size=1, leading to a segfault
# If strain_at_nearest_qp=true, then _vol_strain will be evaluated correctly just at the single quadpoint
#
# This input file solves no useful physics: it is just illustrating the above point
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  strain_at_nearest_qp = true
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'disp_x'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./dummy_sum]
    type = PorousFlowSumQuantity
  [../]
[]

[Variables]
  [./disp_x]
  [../]
[]

[Kernels]
  [./dummy]
    type = Diffusion
    variable = disp_x
  [../]
[]

[DiracKernels]
  [./line_sink]
    type = PorousFlowPolyLineSink
    function_of = temperature
    SumQuantityUO = dummy_sum
    point_file = strain_at_nearest_qp.bh
    p_or_t_vals = '0'
    fluxes = '0'
    variable = disp_x
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature  # needed because of the PorousFlowPolyLineSink
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
    displacements = disp_x
  [../]
  [./porosity_at_nodes]
    type = PorousFlowPorosity
    mechanical = true # to ensure coupling with volumetric strain
    at_nodes = true  # to ensure evaluation at nodes
    porosity_zero = 0
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
  dt = 1
  solve_type = NEWTON
[]

modules/tensor_mechanics/test/tests/finite_strain_tensor_mechanics_tests/finite_strain_patch.i

# Patch Test
# This test is designed to compute constant xx, yy, zz, xy, yz, and zx
# stress on a set of irregular hexes.  The mesh is composed of one
# block with seven elements.  The elements form a unit cube with one
# internal element.  There is a nodeset for each exterior node.
# The cube is displaced by 1e-6 units in x, 2e-6 in y, and 3e-6 in z.
# The faces are sheared as well (1e-6, 2e-6, and 3e-6 for xy, yz, and
# zx).  This gives a uniform strain/stress state for all six unique
# tensor components.
# With Young's modulus at 1e6 and Poisson's ratio at 0, the shear
# modulus is 5e5 (G=E/2/(1+nu)).  Therefore,
#
# stress xx = 1e6 * 1e-6 = 1
# stress yy = 1e6 * 2e-6 = 2
# stress zz = 1e6 * 3e-6 = 3
# stress xy = 2 * 5e5 * 1e-6 / 2 = 0.5
# (2 * G   * gamma_xy / 2 = 2 * G * epsilon_xy)
# stress yz = 2 * 5e5 * 2e-6 / 2 = 1
# stress zx = 2 * 5e5 * 3e-6 / 2 = 1.5

[Mesh]
  # Comment
  # Mesh
  file = patch_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  # Functions
  [./rampConstant1]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1e-6
  [../]
  [./rampConstant2]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 2e-6
  [../]
  [./rampConstant3]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 3e-6
  [../]
  [./rampConstant4]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 4e-6
  [../]
  [./rampConstant6]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 6e-6
  [../]
[]

[Variables]
  # Variables
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  # AuxVariables
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  # AuxKernels
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
[]

[BCs]
  # BCs
  [./node1_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./node1_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = rampConstant2
  [../]
  [./node1_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 1
    function = rampConstant3
  [../]
  [./node2_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = rampConstant1
  [../]
  [./node2_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = rampConstant2
  [../]
  [./node2_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 2
    function = rampConstant6
  [../]
  [./node3_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 3
    function = rampConstant1
  [../]
  [./node3_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./node3_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 3
    function = rampConstant3
  [../]
  [./node4_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./node4_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
  [./node4_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]
  [./node5_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 5
    function = rampConstant1
  [../]
  [./node5_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = rampConstant4
  [../]
  [./node5_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 5
    function = rampConstant3
  [../]
  [./node6_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 6
    function = rampConstant2
  [../]
  [./node6_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 6
    function = rampConstant4
  [../]
  [./node6_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 6
    function = rampConstant6
  [../]
  [./node7_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 7
    function = rampConstant2
  [../]
  [./node7_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 7
    function = rampConstant2
  [../]
  [./node7_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 7
    function = rampConstant3
  [../]
  [./node8_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 8
    function = rampConstant1
  [../]
  [./node8_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 8
    function = rampConstant2
  [../]
  [./node8_z]
    type = DirichletBC
    variable = disp_z
    boundary = 8
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = '1 2 3 4 5 6 7'
    C_ijkl = '1.0e6  0.0   0.0 1.0e6  0.0  1.0e6 0.5e6 0.5e6 0.5e6'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = '1 2 3 4 5 6 7'
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2 3 4 5 6 7'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  # Executioner
  type = Transient

  solve_type = 'NEWTON'


  nl_abs_tol = 1e-10
  l_max_its = 20
  start_time = 0.0
  dt = 1.0
  num_steps = 2
  petsc_options_iname = -pc_type
  petsc_options_value = lu
  end_time = 2.0
[]

[Outputs]
  exodus = true
[] # Output

modules/solid_mechanics/test/tests/check_error/num_constants_sm.i

[Mesh]
  file = cube.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./goo]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    bulk_modulus = 1e6
    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/tensor_mechanics/test/tests/weak_plane_tensile/small_deform_hard1.i

# Checking internal-parameter evolution
# A single element is stretched by 1E-6*t in z directions.
#
# Young's modulus = 20 MPa.  Tensile strength = 10 Pa
#
# There are two time steps.
# In the first
# trial stress_zz = Youngs Modulus*Strain = 2E7*1E-6 = 20 Pa
# so this returns to stress_zz = 10 Pa, and half of the deformation
# goes to plastic strain, yielding ep_zz_plastic = 0.5E-6
# In the second
# trial stress_zz = 10 + Youngs Modulus*(Strain increment) = 10 + 2E7*1E-6 = 30 Pa
# so this returns to stress_zz = 10 Pa, and all of the deformation
# goes to plastic strain, yielding ep_zz_plastic increment = 1E-6,
# so total plastic strain_zz = 1.5E-6.


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = x_disp
    boundary = front
    value = 0
  [../]
  [./topy]
    type = DirichletBC
    variable = y_disp
    boundary = front
    value = 0
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = front
    function = 1E-6*t
  [../]
[]

[AuxVariables]
  [./wpt_internal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./wpt_internal]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = wpt_internal
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./wpt_internal]
    type = PointValue
    point = '0 0 0'
    variable = wpt_internal
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wpt
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-11
  [../]
[]


[Executioner]
  end_time = 2
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard1
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/phase_field/test/tests/initial_conditions/polycrystal_BndsCalcIC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  nz = 0
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 100
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[GlobalParams]
  op_num = 3
  var_name_base = gr
  int_width = 5 # int_width > 0 is required for initial adaptivity to work based on Bnds
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 105
    grain_num = 3
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
  [./bnds]
    type = BndsCalcIC # IC is created for activating the initial adaptivity
    variable = bnds
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Copper]
    type = GBEvolution
    T = 500 # K
    wGB = 6 # nm
    GBmob0 = 2.5e-6 #m^4/(Js) from Schoenfelder 1997
    Q = 0.23 #Migration energy in eV
    GBenergy = 0.708 #GB energy in J/m^2
  [../]
[]

[Postprocessors]
  [./ngrains]
    type = FeatureFloodCount
    variable = bnds
    threshold = 0.7
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 2
  dt = 1.0
[]

[Adaptivity]
  initial_steps = 1
  max_h_level = 1
  marker = err_bnds
 [./Markers]
    [./err_bnds]
      type = ErrorFractionMarker
      coarsen = 0.3
      refine = 0.9
      indicator = ind_bnds
    [../]
  [../]
  [./Indicators]
     [./ind_bnds]
       type = GradientJumpIndicator
       variable = bnds
    [../]
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

test/tests/multiapps/picard_catch_up/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
  [./nan]
    type = NanAtCountKernel
    variable = v
    count = 32
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    preset = false
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = FunctionDirichletBC
    variable = v
    preset = false
    boundary = right
    function = 't + 1'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/fluidstate/theis_brineco2.i

# Two phase Theis problem: Flow from single source.
# Constant rate injection 2 kg/s
# 1D cylindrical mesh
# Initially, system has only a liquid phase, until enough gas is injected
# to form a gas phase, in which case the system becomes two phase.
#
# This test takes a few minutes to run, so is marked heavy

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2000
  xmax = 2000
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = Y
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[AuxVariables]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./y0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1]
    type = PorousFlowPropertyAux
    variable = x1
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./y0]
    type = PorousFlowPropertyAux
    variable = y0
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = timestep_end
  [../]
[]

[Variables]
  [./pgas]
    initial_condition = 20e6
  [../]
  [./zi]
    initial_condition = 0
  [../]
  [./xnacl]
    initial_condition = 0.1
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pgas
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pgas
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = zi
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = zi
  [../]
  [./mass2]
    type = PorousFlowMassTimeDerivative
    fluid_component = 2
    variable = xnacl
  [../]
  [./flux2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 2
    variable = xnacl
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi xnacl'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2sw]
      type = CO2FluidProperties
    [../]
    [./co2]
      type = TabulatedFluidProperties
      fp = co2sw
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
    [./watertab]
      type = TabulatedFluidProperties
      fp = water
      temperature_min = 273.15
      temperature_max = 573.15
      fluid_property_file = water_fluid_properties.csv
      save_file = false
    [../]
    [./brine]
      type = BrineFluidProperties
      water_fp = watertab
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = zi
    temperature_unit = Celsius
    xnacl = xnacl
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
  [../]
[]

[BCs]
  [./rightwater]
    type = DirichletBC
    boundary = right
    value = 20e6
    variable = pgas
  [../]
[]

[DiracKernels]
  [./source]
    type = PorousFlowSquarePulsePointSource
    point = '0 0 0'
    mass_flux = 2
    variable = zi
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1e5
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    growth_factor = 1.5
  [../]
[]

[VectorPostprocessors]
  [./line]
    type = LineValueSampler
    sort_by = x
    start_point = '0 0 0'
    end_point = '2000 0 0'
    num_points = 10000
    variable = 'pgas zi xnacl x1 saturation_gas'
    execute_on = 'timestep_end'
  [../]
[]

[Postprocessors]
  [./pgas]
    type = PointValue
    point = '4 0 0'
    variable = pgas
  [../]
  [./sgas]
    type = PointValue
    point = '4 0 0'
    variable = saturation_gas
  [../]
  [./zi]
    type = PointValue
    point = '4 0 0'
    variable = zi
  [../]
  [./massgas]
    type = PorousFlowFluidMass
    fluid_component = 1
  [../]
  [./x1]
    type = PointValue
    point = '4 0 0'
    variable = x1
  [../]
  [./y0]
    type = PointValue
    point = '4 0 0'
    variable = y0
  [../]
  [./xnacl]
    type = PointValue
    point = '4 0 0'
    variable = xnacl
  [../]
[]

[Outputs]
  print_linear_residuals = false
  perf_graph = true
  [./csvout]
    type = CSV
    execute_on = timestep_end
    execute_vector_postprocessors_on = final
  [../]
[]

modules/chemical_reactions/test/tests/parser/equilibrium_action.i

# Test AqueousEquilibriumReactions parser

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[ICs]
  [./a]
    type = BoundingBoxIC
    variable = a
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 1
    inside = 1.0e-2
    outside = 1.0e-10
  [../]
  [./b]
    type = BoundingBoxIC
    variable = b
    x1 = 0.0
    y1 = 0.0
    x2 = 1.0e-10
    y2 = 1
    inside = 1.0e-2
    outside = 1.0e-10
  [../]
  [./pressure]
    type = FunctionIC
    variable = pressure
    function = 2-x
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = 'a b'
    reactions = '2a = pa2 2,
                 (1.0)a + (1.0)b = pab -2'
    secondary_species = 'pa2 pab'
    pressure = pressure
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./a_conv]
    type = PrimaryConvection
    variable = a
    p = pressure
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./b_diff]
    type = PrimaryDiffusion
    variable = b
  [../]
  [./b_conv]
    type = PrimaryConvection
    variable = b
    p = pressure
  [../]
[]

[BCs]
  [./a_left]
    type = DirichletBC
    variable = a
    boundary = left
    value = 1.0e-2
  [../]
  [./a_right]
    type = ChemicalOutFlowBC
    variable = a
    boundary = right
  [../]
  [./b_left]
    type = DirichletBC
    variable = b
    boundary = left
    value = 1.0e-2
  [../]
  [./b_right]
    type = ChemicalOutFlowBC
    variable = b
    boundary = right
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-4 1e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  nl_abs_tol = 1e-12
  end_time = 10
  dt = 10
[]

[Outputs]
  file_base = equilibrium_out
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

modules/contact/test/tests/bouncing-block-contact/tied-nodes.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
[]

[Mesh]
  file = long-bottom-block-symmetric-single-element.e
[]

[Variables]
  [./disp_x]
    scaling = 2
  [../]
  [./disp_y]
    scaling = 3
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [./disp_x]
    type = RANFSTieNode
    slave = 10
    master = 20
    variable = disp_x
    master_variable = disp_x
    component = x
  [../]
  [./disp_y]
    type = RANFSTieNode
    slave = 10
    master = 20
    variable = disp_y
    master_variable = disp_y
    component = y
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = 30
    value = 0
  [../]
  [./topx]
    type = DirichletBC
    variable = disp_x
    boundary = 30
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dtmin = 1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre    boomeramg'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  [exo]
    type = Exodus
  []
  checkpoint = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
[]

modules/tensor_mechanics/test/tests/dynamics/time_integration/hht_test_ti.i

# Test for  HHT time integration

# The test is for an 1D bar element of  unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# alpha, beta and gamma are HHT time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel + alpha*(K*disp - K*disp_old) + K*disp = P(t+alpha dt)*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + alpha*(Div stress - Div stress_old) +Div Stress= P(t+alpha dt)
#
# The first term on the left is evaluated using the Inertial force kernel
# The next two terms on the left involving alpha are evaluated using the
# DynamicStressDivergenceTensors Kernel
# The residual due to Pressure is evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure becomes constant.
# Alpha equal to zero will result in Newmark integration.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./DynamicTensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    alpha = 0.11
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
  [../]

[]

[AuxKernels]
  [./accel_x] # These auxkernls are only for checking output
    type = TestNewmarkTI
    displacement = disp_x
    variable = accel_x
    first = false
  [../]
  [./accel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = accel_y
    first = false
  [../]
  [./accel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = accel_z
    first = false
  [../]
  [./vel_x]
    type = TestNewmarkTI
    displacement = disp_x
    variable = vel_x
  [../]
  [./vel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = vel_y
  [../]
  [./vel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = vel_z
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 0
    index_j = 1
  [../]
[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = bottom
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
      factor = 1
      alpha = 0.11
    [../]
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '210e9 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 2
  dt = 0.1

  # Time integration scheme
  scheme = 'newmark-beta'
[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp]
    type = NodalMaxValue
    variable = disp_y
    boundary = bottom
  [../]
  [./vel]
    type = NodalMaxValue
    variable = vel_y
    boundary = bottom
  [../]
  [./accel]
    type = NodalMaxValue
    variable = accel_y
    boundary = bottom
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]
[]

[Outputs]
  file_base = 'hht_test_out'
  exodus = true
  perf_graph = true
[]

modules/combined/test/tests/ad_power_law_creep/power_law_creep.i

# 1x1x1 unit cube with uniform pressure on top face

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[Variables]
  [./temp]
    initial_condition = 1000.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy creep_strain_xx creep_strain_yy creep_strain_zz elastic_strain_yy'
    use_automatic_differentiation = true
  [../]
[]

[Kernels]
  [./heat]
    type = ADHeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = ADHeatConductionTimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./u_top_pull]
    type = ADPressure
    variable = disp_y
    component = 1
    boundary = top
    constant = -10.0e6
  [../]
  [./u_bottom_fix]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = ADDirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'bottom top'
    value = 1000.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e11
    poissons_ratio = 0.3
  [../]
  [./radial_return_stress]
    type = ADComputeMultipleInelasticStress
    inelastic_models = 'power_law_creep'
  [../]
  [./power_law_creep]
    type = ADPowerLawCreepStressUpdate
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    temperature = temp
  [../]

  [./thermal]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]
  [./density]
    type = ADDensity
    density = 1.0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.0
  num_steps = 10
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/energy_conservation/heat04.i

# The sample is a single unit element, with fixed displacements on
# all sides.  A heat source of strength S (J/m^3/s) is applied into
# the element.  There is no fluid flow or heat flow.  The rise
# in temperature, porepressure and stress, and the change in porosity is
# matched with theory.
#
# In this case, fluid mass must be conserved, and there is no
# volumetric strain, so
# porosity * fluid_density = constant
# Also, the energy-density in the rock-fluid system increases with S:
# d/dt [(1 - porosity) * rock_density * rock_heat_cap * T + porosity * fluid_density * fluid_heat_cap * T] = S
# Also, the porosity evolves according to THM as
# porosity = biot + (porosity0 - biot) * exp( (biot - 1) * P / fluid_bulk + rock_thermal_exp * T)
# Finally, the effective stress must be exactly zero (as there is
# no strain).
#
# Let us assume that
# fluid_density = dens0 * exp(P / fluid_bulk - fluid_thermal_exp * T)
# Then the conservation of fluid mass means
# porosity = por0 * exp(- P / fluid_bulk + fluid_thermal_exp * T)
# where dens0 * por0 = the initial fluid mass.
# The last expression for porosity, combined with the THM one,
# and assuming that biot = 1 for simplicity, gives
# porosity = 1 + (porosity0 - 1) * exp(rock_thermal_exp * T) = por0 * exp(- P / fluid_bulk + fluid_thermal_exp * T) .... (A)
#
# This stuff may be substituted into the heat energy-density equation:
# S = d/dt [(1 - porosity0) * exp(rock_thermal_exp * T) * rock_density * rock_heat_cap * T + porosity * fluid_density * fluid_heat_cap * T]
#
# If S is constant then
# S * t = (1 - porosity0) * exp(rock_thermal_exp * T) * rock_density * rock_heat_cap * T + porosity * fluid_density * fluid_heat_cap * T
# with T(t=0) = 0 then Eqn(A) implies that por0 = porosity0 and
# P / fluid_bulk = fluid_thermal_exp * T - log(1 + (por0 - 1) * exp(rock_thermal_exp * T)) + log(por0)
#
# Parameters:
# A = 2
# fluid_bulk = 2.0
# dens0 = 3.0
# fluid_thermal_exp = 0.5
# fluid_heat_cap = 2
# por0 = 0.5
# rock_thermal_exp = 0.25
# rock_density = 5
# rock_heat_capacity = 0.2

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.5
      cv = 2
      cp = 2
      bulk_modulus = 2.0
      density0 = 3.0
    [../]
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pp]
  [../]
  [./temp]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 1.0
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 1.0
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 1.0
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = pp
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./temp]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
  [./poro_vol_exp_temp]
    type = PorousFlowHeatVolumetricExpansion
    variable = temp
  [../]
  [./heat_source]
    type = BodyForce
    function = 1
    variable = temp
  [../]
[]

[Functions]
  [./err_T_fcn]
    type = ParsedFunction
    vars = 'por0 rte temp rd rhc m0 fhc source'
    vals = '0.5 0.25 t0   5  0.2 1.5 2  1'
    value = '((1-por0)*exp(rte*temp)*rd*rhc*temp+m0*fhc*temp-source*t)/(source*t)'
  [../]
  [./err_pp_fcn]
    type = ParsedFunction
    vars = 'por0 rte temp rd rhc m0 fhc source bulk pp fte'
    vals = '0.5 0.25 t0   5  0.2 1.5 2  1      2    p0 0.5'
    value = '(bulk*(fte*temp-log(1+(por0-1)*exp(rte*temp))+log(por0))-pp)/pp'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]


[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./porosity]
    type = PorousFlowPorosity
    thermal = true
    fluid = true
    mechanical = true
    ensure_positive = false
    biot_coefficient = 1.0
    porosity_zero = 0.5
    thermal_expansion_coeff = 0.25
    solid_bulk = 2
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 0.2
    density = 5.0
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    temperature_unit = Kelvin
    fp = the_simple_fluid
    phase = 0
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = pp
  [../]
  [./t0]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = temp
  [../]
  [./porosity]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = porosity
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./fluid_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
  [./total_heat]
    type = PorousFlowHeatEnergy
    phase = 0
    execute_on = 'timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
  [./err_T]
    type = FunctionValuePostprocessor
    function = err_T_fcn
  [../]
  [./err_P]
    type = FunctionValuePostprocessor
    function = err_pp_fcn
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 5
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = heat04
  exodus = true
  [./csv]
    type = CSV
  [../]
[]

test/tests/userobjects/layered_average/layered_average_1d_displaced.i

# This tests that Layered user objects work with displaced meshes.  Originally,
# the mesh is aligned with x-axis.  Then we displace the mesh to be aligned with
# z-axis and sample along the z-direction.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 5
  elem_type = EDGE2
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./left_fn]
    type = ParsedFunction
    value = 't + 1'
  [../]

  [./disp_x_fn]
    type = ParsedFunction
    value = '-x'
  [../]
  [./disp_z_fn]
    type = ParsedFunction
    value = 'x'
  [../]
[]

[AuxVariables]
  [./la]
    family = MONOMIAL
    order = CONSTANT
  [../]

  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxKernels]
  [./la_ak]
    type = SpatialUserObjectAux
    variable = la
    user_object = la_uo
    execute_on = TIMESTEP_END
    use_displaced_mesh = true
  [../]

  [./disp_x_ak]
    type = FunctionAux
    variable = disp_x
    function = 'disp_x_fn'
  [../]
  [./disp_y_ak]
    type = ConstantAux
    variable = disp_y
    value = 0
  [../]
  [./disp_z_ak]
    type = FunctionAux
    variable = disp_z
    function = 'disp_z_fn'
  [../]
[]

[UserObjects]
  [./la_uo]
    type = LayeredAverage
    direction = z
    variable = u
    num_layers = 5
    execute_on = TIMESTEP_END
    use_displaced_mesh = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = u
    boundary = left
    function = left_fn
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 2
  solve_type = NEWTON
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/stickyBC/except1.i

# Exception testing of StickyBC.  Here min_value > max_value
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
  [../]
[]

[BCs]
  [./obstruction]
    type = StickyBC
    variable = disp_y
    boundary = bottom
    min_value = 1
    max_value = -1
  [../]
[]

[Materials]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1.0
    poissons_ratio = 0.2
  [../]
[]

[Executioner]
  type = Transient
[]

modules/tensor_mechanics/test/tests/multi/three_surface00.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 1E-6m in y direction and 1E-6 in z direction.
# trial stress_yy = 1 and stress_zz = 1
#
# Then SimpleTester2 should activate and the algorithm will return to
# stress_yy = 0.75, stress_zz = 0.75
# internal2 should be 0.25

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1'
    debug_jac_at_intnl = '1 1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface00
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/domain_integral_thermal/interaction_integral_2d.i

#This problem from [Wilson 1979] tests the thermal strain term in the
#interaction integral
#
#theta_e = 10 degrees C; a = 252; E = 207000; nu = 0.3; alpha = 1.35e-5
#
#With uniform_refine = 3, KI converges to
#KI = 5.602461e+02 (interaction integral)
#KI = 5.655005e+02 (J-integral)
#
#Both are in good agreement with [Shih 1986]:
#average_value = 0.4857 = KI / (sigma_theta * sqrt(pi * a))
#sigma_theta = E * alpha * theta_e / (1 - nu)
# = 207000 * 1.35e-5 * 10 / (1 - 0.3) = 39.9214
#KI = average_value * sigma_theta * sqrt(pi * a) = 5.656e+02
#
#References:
#W.K. Wilson, I.-W. Yu, Int J Fract 15 (1979) 377-387
#C.F. Shih, B. Moran, T. Nakamura, Int J Fract 30 (1986) 79-102

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = False
[]

[Mesh]
  file = crack2d.e
  displacements = 'disp_x disp_y'
#  uniform_refine = 3
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*x/504)
  [../]
[]

[DomainIntegral]
  integrals = 'JIntegral InteractionIntegralKI'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  convert_J_to_K = true
  symmetry_plane = 1
  incremental = true

  # interaction integral parameters
  disp_x = disp_x
  disp_y = disp_y
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  temperature = temp
  eigenstrain_names = thermal_expansion
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
    eigenstrain_names = thermal_expansion
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 400
    value = 0.0
  [../]
  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = 900
    value = 0.0
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 0.0
    thermal_expansion_coeff = 1.35e-5
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]
[]


[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 40

   nl_rel_step_tol= 1e-10
   nl_rel_tol = 1e-10


   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  file_base = interaction_integral_2d_out
  exodus = true
  csv = true
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

modules/peridynamics/test/tests/jacobian_check/2D_mechanics_BPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = BOND
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.33
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialBPD
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1
[]

test/tests/postprocessors/num_elems/num_elems.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  nz = 0
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 1
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./u_aux]
    order = FIRST
    family = LAGRANGE
  [../]
  [./v_aux]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  dt = 1
  solve_type = PJFNK
[]

[Adaptivity]
  steps = 1
  marker = box
  max_h_level = 3
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = do_nothing
      type = BoxMarker
    [../]
  [../]
[]

[Postprocessors]
  [./num_elems_active]
    type = NumElems
    elem_filter = 'ACTIVE'
    execute_on = 'initial timestep_end'
  [../]
  [./num_elems_total]
    type = NumElems
    elem_filter = 'TOTAL'
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/beam/action/2_block_common.i

# Test for LineElementAction on multiple blocks by placing parameters
# common to all blocks outside of the individual action blocks

# 2 beams of length 1m are fixed at one end and a force of 1e-4 N
# is applied at the other end of the beams. Beam 1 is in block 1
# and beam 2 is in block 2. All the material properties for the two
# beams are identical. The moment of inertia of beam 2 is twice that
# of beam 1.

# Since the end displacement of a cantilever beam is inversely proportional
# to the moment of inertia, the y displacement at the end of beam 1 should be twice
# that of beam 2.

[Mesh]
  type = FileMesh
  file = 2_beam_block.e
  displacements = 'disp_x disp_y disp_z'
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = 1
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = 1
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = 1
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_1]
    type = ConstantRate
    variable = disp_y
    boundary = 2
    rate = 1e-4
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Modules/TensorMechanics/LineElementMaster]
  # parameters common to all blocks

  add_variables = true
  displacements = 'disp_x disp_y disp_z'
  rotations = 'rot_x rot_y rot_z'

  # Geometry parameters
  area = 0.5
  y_orientation = '0.0 1.0 0.0'

  [./block_1]
    Iy = 1e-5
    Iz = 1e-5
    block = 1
  [../]
  [./block_2]
    Iy = 2e-5
    Iz = 2e-5
    block = 2
  [../]
[]

[Materials]
  [./stress]
    type = ComputeBeamResultants
    block = '1 2'
  [../]
  [./elasticity_1]
    type = ComputeElasticityBeam
    youngs_modulus = 2.0
    poissons_ratio = 0.3
    shear_coefficient = 1.0
    block = '1 2'
  [../]
[]

[Postprocessors]
  [./disp_y_1]
    type = PointValue
    point = '1.0 0.0 0.0'
    variable = disp_y
  [../]
  [./disp_y_2]
    type = PointValue
    point = '1.0 1.0 0.0'
    variable = disp_y
  [../]
[]

[Outputs]
  file_base = '2_block_out'
  exodus = true
[]

test/tests/auxkernels/function_scalar_aux/function_scalar_aux.i

#
# Testing a solution that is second order in space and first order in time
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD9
[]

[AuxVariables]
  [./x]
    family = SCALAR
    order = FIRST
  [../]
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    value = ((x*x)+(y*y))-(4*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]

  [./x_fn]
    type = ParsedFunction
    value = t
  [../]
[]

[AuxScalarKernels]
  [./x_saux]
    type = FunctionScalarAux
    variable = x
    function = x_fn
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./x]
    type = ScalarVariable
    variable = x
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.25
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/mobility_derivative/coupledmatdiffusion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  xmax = 15.0
  ymax = 15.0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = CrossIC
      x1 = 0.0
      x2 = 30.0
      y1 = 0.0
      y2 = 30.0
    [../]
  [../]
  [./d]
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 15
      y1 = 15
      radius = 8
      int_width = 3
      invalue = 2
      outvalue = 0
    [../]
  [../]
  [./u]
  [../]
  [./w]
  [../]
[]

[Kernels]
  [./ctime]
    type = TimeDerivative
    variable = c
  [../]
  [./umat]
    type = MatReaction
    variable = c
    v = u
    mob_name = 1
  [../]
  [./urxn]
    type = Reaction
    variable = u
  [../]
  [./cres]
    type = MatDiffusion
    variable = u
    diffusivity = Dc
    args = d
    v = c
  [../]

  [./dtime]
    type = TimeDerivative
    variable = d
  [../]
  [./wmat]
    type = MatReaction
    variable = d
    v = w
    mob_name = 1
  [../]
  [./wrxn]
    type = Reaction
    variable = w
  [../]
  [./dres]
    type = MatDiffusion
    variable = w
    diffusivity = Dd
    args = c
    v = d
  [../]
[]

[Materials]
  [./Dc]
    type = DerivativeParsedMaterial
    f_name = Dc
    function = '0.01+c^2+d'
    args = 'c d'
    derivative_order = 1
  [../]
  [./Dd]
    type = DerivativeParsedMaterial
    f_name = Dd
    function = 'd^2+c+1.5'
    args = 'c d'
    derivative_order = 1
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  lu           1'

  dt = 1
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/nodal_max_value/nodal_max_value_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 20
  ny = 20
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = (sin(pi*t))
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = sin(pi*t)
  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff' #ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  num_steps = 20
[]

[Postprocessors]
  [./max_nodal_val]
    type = NodalMaxValue
    variable = u
  [../]
[]

[Outputs]
  file_base = out_nodal_max
  exodus = true
[]

modules/functional_expansion_tools/examples/3D_volumetric_Cartesian_direct/sub.i

# Derived from the example '3D_volumetric_Cartesian' with the following differences:
#
#   1) The coupling is performed via BodyForce instead of the
#      FunctionSeriesToAux+CoupledForce approach
[Mesh]
  type = GeneratedMesh
  dim = 3

  xmin = 0.0
  xmax = 10.0
  nx = 15

  ymin = 1.0
  ymax = 11.0
  ny = 25

  zmin = 2.0
  zmax = 12.0
  nz = 35
[]

# Non-copy transfers only work with AuxVariable, but nothing will be solved without a variable
# defined. The solution is to define an empty variable tha does nothing, but causes MOOSE to solve
# the AuxKernels that we need.
[Variables]
  [./empty]
  [../]
[]

[AuxVariables]
  [./s]
    order = FIRST
    family = LAGRANGE
  [../]
  [./m_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

# We must have a kernel for every variable, hence this null kernel to match the variable 'empty'
[Kernels]
  [./null_kernel]
    type = NullKernel
    variable = empty
  [../]
[]

[AuxKernels]
  [./reconstruct_m_in]
    type = FunctionSeriesToAux
    function = FX_Basis_Value_Sub
    variable = m_in
  [../]
  [./calculate_s] # Something to make 's' change each time, but allow a converging solution
    type = ParsedAux
    variable = s
    args = m_in
    function = '2*exp(-m_in/0.8)'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3   4   5'
    physical_bounds = '0.0  10.0    1.0 11.0    2.0 12.0'
    x = Legendre
    y = Legendre
    z = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Sub
    variable = s
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

test/tests/transfers/multiapp_postprocessor_interpolation_transfer/master2_quad.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./pp_aux]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./quad]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0.1 0.1 0 0.9 0.1 0 0.1 0.9 0 0.9 0.9 0'
    input_files = 'quad_sub1.i'
  [../]
[]

[Transfers]
  [./sub_to_master_pp]
    type = MultiAppPostprocessorInterpolationTransfer
    direction = from_multiapp
    multi_app = quad
    variable = pp_aux
    postprocessor = pp
  [../]
[]

modules/porous_flow/test/tests/energy_conservation/heat05.i

# Demonstrates that porosity is correctly initialised,
# since the residual should be zero in this example.
# If initQpStatefulProperties of the Porosity calculator
# is incorrect then the residual will be nonzero.
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.5
      cv = 2
      cp = 2
      bulk_modulus = 2.0
      density0 = 3.0
    [../]
  [../]
[]

[GlobalParams]
  biot_coefficient = 0.7
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pp]
    initial_condition = 0.5
  [../]
  [./temp]
    initial_condition = 1.0
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = pp
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./temp]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
  [./poro_vol_exp_temp]
    type = PorousFlowHeatVolumetricExpansion
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./porosity]
    type = PorousFlowPorosity
    thermal = true
    fluid = true
    mechanical = true
    ensure_positive = false
    porosity_zero = 0.5
    thermal_expansion_coeff = 0.25
    solid_bulk = 2
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 0.2
    density = 5.0
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    temperature_unit = Kelvin
    fp = the_simple_fluid
    phase = 0
  [../]
[]

[Postprocessors]
  [./should_be_zero]
    type = NumNonlinearIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  nl_abs_tol = 1e-16
[]

[Outputs]
  file_base = heat05
  csv = true
[]

modules/porous_flow/test/tests/aux_kernels/properties.i

# Example of accessing properties using the PorousFlowPropertyAux AuxKernel for
# each phase and fluid component (as required).

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pwater]
    initial_condition = 1e6
  [../]
  [./sgas]
    initial_condition = 0.3
  [../]
  [./temperature]
    initial_condition = 50
  [../]
[]

[AuxVariables]
  [./x0_water]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.1
  [../]
  [./x0_gas]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.8
  [../]
  [./pressure_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./capillary_pressure]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./saturation_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./density_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./viscosity_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./relperm_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./relperm_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./enthalpy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./energy_water]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./energy_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./pressure_gas]
    type = PorousFlowPropertyAux
    variable = pressure_gas
    property = pressure
    phase = 1
    execute_on = timestep_end
  [../]
  [./capillary_pressure]
    type = PorousFlowPropertyAux
    variable = capillary_pressure
    property = capillary_pressure
    execute_on = timestep_end
  [../]
  [./saturation_water]
    type = PorousFlowPropertyAux
    variable = saturation_water
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./density_water]
    type = PorousFlowPropertyAux
    variable = density_water
    property = density
    phase = 0
    execute_on = timestep_end
  [../]
  [./density_gas]
    type = PorousFlowPropertyAux
    variable = density_gas
    property = density
    phase = 1
    execute_on = timestep_end
  [../]
  [./viscosity_water]
    type = PorousFlowPropertyAux
    variable = viscosity_water
    property = viscosity
    phase = 0
    execute_on = timestep_end
  [../]
  [./viscosity_gas]
    type = PorousFlowPropertyAux
    variable = viscosity_gas
    property = viscosity
    phase = 1
    execute_on = timestep_end
  [../]
  [./relperm_water]
    type = PorousFlowPropertyAux
    variable = relperm_water
    property = relperm
    phase = 0
    execute_on = timestep_end
  [../]
  [./relperm_gas]
    type = PorousFlowPropertyAux
    variable = relperm_gas
    property = relperm
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1_water]
    type = PorousFlowPropertyAux
    variable = x1_water
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./x1_gas]
    type = PorousFlowPropertyAux
    variable = x1_gas
    property = mass_fraction
    phase = 1
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./enthalpy_water]
    type = PorousFlowPropertyAux
    variable = enthalpy_water
    property = enthalpy
    phase = 0
    execute_on = timestep_end
  [../]
  [./enthalpy_gas]
    type = PorousFlowPropertyAux
    variable = enthalpy_gas
    property = enthalpy
    phase = 1
    execute_on = timestep_end
  [../]
  [./energy_water]
    type = PorousFlowPropertyAux
    variable = energy_water
    property = internal_energy
    phase = 0
    execute_on = timestep_end
  [../]
  [./energy_gas]
    type = PorousFlowPropertyAux
    variable = energy_gas
    property = internal_energy
    phase = 1
    execute_on = timestep_end
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pwater
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = sgas
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temperature
  [../]
  [./heat_advection]
    type = PorousFlowHeatAdvection
    variable = temperature
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pwater sgas temperature'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-5
    pc_max = 1e7
    sat_lr = 0.1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
      cv = 2
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1e9
      viscosity = 1e-4
      density0 = 20
      thermal_expansion = 0
      cv = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = pwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'x0_water x0_gas'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]

  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1.0
    density = 125
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/phe01.i

# Capped weak-plane plasticity, Kernel = PlasticHeatEnergy
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./silly_phe]
    type = PlasticHeatEnergy
    coeff = 0.5
    variable = disp_x
  [../]
  [./dummy_disp_y]
    type = TimeDerivative
    variable = disp_y
  [../]
  [./dummy_disp_z]
    type = TimeDerivative
    variable = disp_z
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 2
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 3
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 100
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0
    internal_0 = -2
    internal_limit = 0
  [../]
[]

[Materials]
  [./phe]
    type = ComputePlasticHeatEnergy
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 0 1  0 1 -1.5'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-10
    perfect_guess = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/functional_expansion_tools/test/tests/errors/multiapp_incompatible_orders.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = Diffusion
    variable = m
  [../]
  [./time_diff_m]
    type = TimeDerivative
    variable = m
  [../]
  [./s_in]
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'left right'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '36'
    physical_bounds = '0.0  10.0'
    x = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = multiapp_sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/except2.i

# checking for exception error messages
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = x_disp
    boundary = front
    value = 8E-6
  [../]
  [./topy]
    type = DirichletBC
    variable = y_disp
    boundary = front
    value = 6E-6
  [../]
  [./topz]
    type = DirichletBC
    variable = z_disp
    boundary = front
    value = 1E-6
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 0
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-3
  [../]
[]
[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 0'
    ep_plastic_tolerance = 1E-3
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = except
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/solid_mechanics/test/tests/t_stress/t_stress_ellip_crack_3d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = ellip_crack_4sym_norad_mm.e
  partitioner = centroid
  centroid_partitioner_direction = z
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -689.5 #MPa
  [../]
[]

[DomainIntegral]
  integrals = 'JIntegral InteractionIntegralKI InteractionIntegralT'
  boundary = 1001
  crack_direction_method = CurvedCrackFront
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0.0 1.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  radius_inner = '12.5 25.0 37.5'
  radius_outer = '25.0 37.5 50.0'
  intersecting_boundary = '1 2'
  symmetry_plane = 2
  youngs_modulus = 206.8e+3 #MPa
  poissons_ratio = 0.3
  block = 1
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./strain_xx]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = strain_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = strain_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./strain_zz]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = strain_zz
    index = 2
    execute_on = timestep_end
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 12
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 5
      function = rampConstantUp
    [../]
  [../]
[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 206.8e+3 #MPa
    poissons_ratio = 0.3
    thermal_expansion = 1e-5
    compute_JIntegral = true
  [../]
[]


[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


#  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'


  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   nl_rel_tol = 1e-11
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = t_stress_ellip_crack_out
  exodus = true
  csv = true
[]

modules/chemical_reactions/test/tests/desorption/langmuir_jac_de.i

# testing desorption jacobian
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[Variables]
  [./pressure]
  [../]
  [./conc]
  [../]
[]

[ICs]
  [./p_ic]
    type = RandomIC
    variable = pressure
    min = 1
    max = 2
  [../]
  [./conc_ic]
    type = RandomIC
    variable = conc
    min = -1
    max = 1
  [../]
[]


[Kernels]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    variable = conc
    pressure_var = pressure
  [../]
  [./flux_to_porespace]
    type = DesorptionToPorespace
    variable = pressure
    conc_var = conc
  [../]
[]

[Materials]
  [./langmuir_params]
    type = LangmuirMaterial
    block = 0
    one_over_desorption_time_const = 0.813
    one_over_adsorption_time_const = 0
    langmuir_density = 0.34
    langmuir_pressure = 1.5
    conc_var = conc
    pressure_var = pressure
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = langmuir_jac1
[]

test/tests/controls/time_periods/scalarkernels/scalarkernels.i

# This tests controllability of the enable parameter of scalar kernels.
#
# There are 2 scalar variables, {u, v}, with the ODEs:
#   du/dt = 1    u(0) = 0
#   v = u        v(0) = -10
# A control switches the ODE 'v = u' to the following ODE when t >= 2:
#   dv/dt = 2
#
# 5 time steps (of size dt = 1) will be taken, and the predicted values are as follows:
#      t     u     v
# ------------------
#      0     0   -10
#      1     1     1
#      2     2     2
#      3     3     4
#      4     4     6
#      5     5     8

u_initial = 0
u_growth = 1

v_initial = -10
v_growth = 2

t_transition = 2

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [./u]
    family = SCALAR
    order = FIRST
  [../]
  [./v]
    family = SCALAR
    order = FIRST
  [../]
[]

[ICs]
  [./u_ic]
    type = ScalarConstantIC
    variable = u
    value = ${u_initial}
  [../]
  [./v_ic]
    type = ScalarConstantIC
    variable = v
    value = ${v_initial}
  [../]
[]

[ScalarKernels]
  [./u_time]
    type = ODETimeDerivative
    variable = u
  [../]
  [./u_src]
    type = ParsedODEKernel
    variable = u
    function = '-${u_growth}'
  [../]

  [./v_time]
    type = ODETimeDerivative
    variable = v
    enable = false
  [../]
  [./v_src]
    type = ParsedODEKernel
    variable = v
    function = '-${v_growth}'
    enable = false
  [../]
  [./v_constraint]
    type = ParsedODEKernel
    variable = v
    args = 'u'
    function = 'v - u'
  [../]
[]

[Controls]
  [./time_period_control]
    type = TimePeriod
    end_time = ${t_transition}
    enable_objects = 'ScalarKernel::v_constraint'
    disable_objects = 'ScalarKernel::v_time ScalarKernel::v_src'
    execute_on = 'INITIAL TIMESTEP_END'
  [../]
[]

[Executioner]
  type = Transient
  scheme = implicit-euler
  dt = 1
  num_steps = 5
  abort_on_solve_fail = true

  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/heterogeneous_materials/vol_expansion_poroperm.i

# Apply an increasing porepressure, with zero mechanical forces,
# and observe the corresponding volumetric expansion and porosity increase.
# Check that permeability is calculated correctly from porosity.
#
# P = t
# With the Biot coefficient being 1, the effective stresses should be
# stress_xx = stress_yy = stress_zz = t
# With bulk modulus = 1 then should have
# vol_strain = strain_xx + strain_yy + strain_zz = t.
#
# With the biot coefficient being 1, the porosity (phi) # at time t is:
# phi = 1 - (1 - phi0) / exp(vol_strain)
# where phi0 is the porosity at t = 0 and P = 0.
#
# The permeability (k) is
# k = k_anisotropic * f * d^2 * phi^n / (1-phi)^m

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = 0
  PorousFlowDictator = dictator
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./p]
  [../]
[]

[BCs]
  [./p]
    type = FunctionDirichletBC
    boundary = 'bottom top'
    variable = p
    function = t
  [../]
  [./xmin]
    type = DirichletBC
    boundary = left
    variable = disp_x
    value = 0
  [../]
  [./ymin]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0
  [../]
  [./zmin]
    type = DirichletBC
    boundary = back
    variable = disp_z
    value = 0
  [../]
[]

[Kernels]
  [./p_does_not_really_diffuse]
    type = Diffusion
    variable = p
  [../]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 1
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 1
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 1
    variable = disp_z
    component = 2
  [../]
[]

[AuxVariables]
  [./poro0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./poro]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_y]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./perm_z]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[ICs]
  [./poro0]
    type = RandomIC
    seed = 0
    variable = poro0
    max = 0.15
    min = 0.05
  [../]
[]

[AuxKernels]
  [./poromat]
    type = PorousFlowPropertyAux
    property = porosity
    variable = poro
  [../]
  [./perm_x]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_x
    row = 0
    column = 0
  [../]
  [./perm_y]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_y
    row = 1
    column = 1
  [../]
  [./perm_z]
    type = PorousFlowPropertyAux
    property = permeability
    variable = perm_z
    row = 2
    column = 2
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'p'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 1
    shear_modulus = 1
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = p
    capillary_pressure = pc
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = poro0
    solid_bulk = 1
    biot_coefficient = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityKozenyCarman
    k_anisotropy = '1 0 0  0 2 0  0 0 0.1'
    poroperm_function = kozeny_carman_fd2
    f = 0.1
    d = 5
    m = 2
    n = 7
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol'
    petsc_options_value = 'gmres bjacobi 1E-10 1E-10 10 1E-15 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  dt = 0.1
  end_time = 1
[]

[Outputs]
  exodus = true
  execute_on = 'timestep_end'
[]

modules/tensor_mechanics/test/tests/ad_plastic/power_law_creep.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  second_order = true
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[AuxVariables]
  [./hydrostatic_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./hydrostatic_stress]
    type = RankTwoScalarAux
    variable = hydrostatic_stress
    rank_two_tensor = stress
    scalar_type = Hydrostatic
  [../]
[]

[Variables]
  [./disp_x]
    order = SECOND
    scaling = 1e-10
  [../]
  [./disp_y]
    order = SECOND
    scaling = 1e-10
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    x = '0 10'
    y = '0 1e-3'
  [../]
[]

[Kernels]
  [./stress_x]
    type = ADStressDivergenceTensors
    component = 0
    variable = disp_x
  [../]
  [./stress_y]
    type = ADStressDivergenceTensors
    component = 1
    variable = disp_y
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ADComputeIncrementalSmallStrain
  [../]
  [./elastic_strain]
    type = ADComputeMultipleInelasticStress
  [../]

  [./creep_ten]
    type = ADPowerLawCreepStressUpdate
    coefficient = 10e-24
    n_exponent = 4
    activation_energy = 0
    base_name = creep_ten
  [../]
  [./creep_ten2]
    type = ADPowerLawCreepStressUpdate
    coefficient = 10e-24
    n_exponent = 4
    activation_energy = 0
    base_name = creep_ten2
  [../]
  [./creep_one]
    type = ADPowerLawCreepStressUpdate
    coefficient = 1e-24
    n_exponent = 4
    activation_energy = 0
    base_name = creep_one
  [../]
  [./creep_nine]
    type = ADPowerLawCreepStressUpdate
    coefficient = 9e-24
    n_exponent = 4
    activation_energy = 0
    base_name = creep_nine
  [../]
  [./creep_zero]
    type = ADPowerLawCreepStressUpdate
    coefficient = 0e-24
    n_exponent = 4
    activation_energy = 0
    base_name = creep_zero
  [../]
[]

[BCs]
  [./no_disp_x]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]

  [./no_disp_y]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

  [./pull_disp_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = top
    function = pull
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  line_search = 'none'
  nl_rel_tol = 1e-5

  num_steps = 5
  dt = 1e-1
[]

[Postprocessors]
  [./max_disp_x]
    type = ElementExtremeValue
    variable = disp_x
  [../]
  [./max_disp_y]
    type = ElementExtremeValue
    variable = disp_y
  [../]
  [./max_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
  [../]
  [./dt]
    type = TimestepSize
  [../]
  [./num_lin]
    type = NumLinearIterations
    outputs = console
  [../]
  [./num_nonlin]
    type = NumNonlinearIterations
    outputs = console
  [../]
[]

[Outputs]
  csv = true
[]

modules/phase_field/test/tests/MultiPhase/mixedswitchingfunctionmaterial.i

# This is a test of the MixedSwitchingfunctionmaterial
# Several mixed type of switching function with ajustable weight parameter

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  xmin = 0
  xmax = 20
  ymin = 0
  ymax = 20
  elem_type = QUAD4
[]

[Variables]
  [./eta]
  [../]
[]

[ICs]
  [./IC_eta]
    type = SmoothCircleIC
    variable = eta
    x1 = 10
    y1 = 10
    radius = 5
    invalue = 1
    outvalue = 0
    int_width = 1
  [../]
[]

[Kernels]
  [./eta_bulk]
    type = AllenCahn
    variable = eta
    f_name = F
  [../]
  [./eta_interface]
    type = ACInterface
    variable = eta
    kappa_name = kappa_eta
  [../]

  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'L kappa_eta'
    prop_values = '1.0 1.0'
  [../]

  [./switching]
    type = MixedSwitchingFunctionMaterial
    function_name = h
    eta = eta
    h_order = MIX234
    weight = 1.0
  [../]

  [./barrier]
    type = BarrierFunctionMaterial
    eta = eta
    g_order = SIMPLE
  [../]

# Total free energy: F = Fa*(1-h) + Fb*h
  [./free_energy]
    type = DerivativeTwoPhaseMaterial
    f_name = F
    fa_name = '0'
    fb_name = '-1'
    eta = eta
    W = 3.1
    derivative_order = 2
    outputs = exodus
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-12
  start_time = 0.0
  num_steps = 2

  [./TimeStepper]
    type = IterationAdaptiveDT
    optimal_iterations = 9
    iteration_window = 2
    growth_factor = 1.1
    cutback_factor = 0.75
    dt = 0.3
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/2D_different_planes/planestrain_jacobian_testing_xy.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = square_xy_plane.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./plane_strain]
    block = 1
    strain = SMALL
    out_of_plane_direction = z
    planar_formulation = PLANE_STRAIN
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.0
    youngs_modulus = 1
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-ksp_type -pc_type -snes_type'
  petsc_options_value = 'bcgs bjacobi test'

  end_time = 1.0
[]

test/tests/outputs/transferred_scalar_variable/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/dynamics/prescribed_displacement/3D_QStatic_1_Ramped_Displacement.i

# One 3D element under ramped displacement loading.
#
# loading:
# time : 0.0 0.1  0.2  0.3
# disp : 0.0 0.0 -0.01 -0.01

# This displacement loading is applied using the PresetDisplacement boundary condition.

# Here, the given displacement time history is converted to an acceleration
# time history using Backward Euler time differentiation. Then, the resulting
# acceleration is integrated using Newmark time integration to obtain a
# displacement time history which is then applied to the boundary.

# This is done because if the displacement is applied using Dirichlet BC, the
# resulting acceleration is very noisy.

# Boundaries:
# x = 0 left
# x = 1 right
# y = 0 bottom
# y = 1 top
# z = 0 back
# z = 1 front

# Result: The displacement at the top node in the z direction should match
# the prescribed displacement. Also, the z acceleration should
# be two triangular pulses, one peaking at 0.1 and another peaking at
# 0.2.


[Mesh]
  type = GeneratedMesh
  dim = 3 # Dimension of the mesh
  nx = 1 # Number of elements in the x direction
  ny = 1 # Number of elements in the y direction
  nz = 1 # Number of elements in the z direction
  xmin = 0.0
  xmax = 1
  ymin = 0.0
  ymax = 1
  zmin = 0.0
  zmax = 1
  allow_renumbering = false # So NodalVariableValue can index by id
[]

[Variables] # variables that are solved
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables] # variables that are calculated for output
  [./accel_x]
  [../]
  [./vel_x]
  [../]
  [./accel_y]
  [../]
  [./vel_y]
  [../]
  [./accel_z]
  [../]
  [./vel_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./DynamicTensorMechanics] # zeta*K*vel + K * disp
    displacements = 'disp_x disp_y disp_z'
    zeta = 0.000025
  [../]
  [./inertia_x] # M*accel + eta*M*vel
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25 # Newmark time integration
    gamma = 0.5 # Newmark time integration
    eta = 19.63
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
    eta = 19.63
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
    eta = 19.63
  [../]
[]

[AuxKernels]
  [./accel_x] # Calculates and stores acceleration at the end of time step
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x] # Calculates and stores velocity at the end of the time step
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Functions]
  [./displacement_front]
    type = PiecewiseLinear
    data_file = 'displacement.csv'
    format = columns
  [../]
[]

[BCs]
  [./Preset_displacement]
    type = PresetDisplacement
    variable = disp_z
    function = displacement_front
    boundary = front
    beta = 0.25
    velocity = vel_z
    acceleration = accel_z
  [../]
  [./anchor_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./anchor_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./anchor_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    youngs_modulus = 325e6 #Pa
    poissons_ratio = 0.3
    type = ComputeIsotropicElasticityTensor
    block = 0
  [../]
  [./strain]
    #Computes the strain, assuming small strains
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    #Computes the stress, using linear elasticity
    type = ComputeLinearElasticStress
    block = 0
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = density
    prop_values = 2000 #kg/m3
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 3.0
  l_tol = 1e-6
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  dt = 0.1
  timestep_tolerance = 1e-6
[]

[Postprocessors] # These quantites are printed to a csv file at every time step
  [./_dt]
    type = TimestepSize
  [../]
  [./accel_6x]
    type = NodalVariableValue
    nodeid = 6
    variable = accel_x
  [../]
  [./accel_6y]
    type = NodalVariableValue
    nodeid = 6
    variable = accel_y
  [../]
  [./accel_6z]
    type = NodalVariableValue
    nodeid = 6
    variable = accel_z
  [../]
  [./vel_6x]
    type = NodalVariableValue
    nodeid = 6
    variable = vel_x
  [../]
  [./vel_6y]
    type = NodalVariableValue
    nodeid = 6
    variable = vel_y
  [../]
  [./vel_6z]
    type = NodalVariableValue
    nodeid = 6
    variable = vel_z
  [../]
  [./disp_6x]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_6y]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./disp_6z]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_z
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
[]

test/tests/dampers/min_damping/min_elem_damping.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./u_dt]
    type = TimeDerivative
    variable = u
  [../]
  [./u_source]
    type = BodyForce
    variable = u
    value = 1
  [../]
[]

[BCs]
  [./u_left]
    type = DirichletBC
    boundary = left
    variable = u
    value = 0.0
  [../]
[]

[Dampers]
  [./limit]
    type = BoundingValueElementDamper
    variable = u
    max_value = 1.5
    min_value = -1.5
    min_damping = 0.001
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
[]

[Postprocessors]
  [./u_avg]
    type = ElementAverageValue
    variable = u
  [../]
  [./dt]
    type = TimestepSize
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_1/ring1_template2_sm.i

[Mesh]
  file = ring1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]


[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/chemical_reactions/test/tests/aqueous_equilibrium/co2_h2o.i

# Batch CO2 - H2O equilibrium reaction at 25C
#
# Aqueous equilibrium reactions:
# a)  H+ + HCO3- = CO2(aq),         Keq = 10^(6.3447)
# b)  HCO3- = H+ + CO3--,           Keq = 10^(-10.3288)
# c)  - H+ = OH-,                   Keq = 10^(-13.9951)
#
# The primary chemical species are h+ and hco3-, and the secondary equilibrium
# species are CO2(aq), CO3-- and OH-

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[AuxVariables]
  [./ph]
  [../]
  [./total_h+]
  [../]
  [./total_hco3-]
  [../]
[]

[AuxKernels]
  [./ph]
    type = PHAux
    variable = ph
    h_conc = h+
  [../]
  [./total_h+]
    type = TotalConcentrationAux
    variable = total_h+
    primary_species = h+
    v = 'oh- co3-- co2_aq'
    sto_v = '-1 1 1'
  [../]
  [./total_hco3-]
    type = TotalConcentrationAux
    variable = total_hco3-
    primary_species = hco3-
    v = 'co2_aq co3--'
    sto_v = '1 1'
  [../]
[]

[Variables]
  [./h+]
    initial_condition = 1e-5
  [../]
  [./hco3-]
    initial_condition = 1e-5
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = 'hco3- h+'
    secondary_species = 'co2_aq co3-- oh-'
    reactions = 'hco3- + h+ = co2_aq 6.3447,
                 hco3- - h+ = co3-- -10.3288,
                 - h+ = oh- -13.9951'
  [../]
[]

[Kernels]
  [./h+_ie]
    type = PrimaryTimeDerivative
    variable = h+
  [../]
  [./hco3-_ie]
    type = PrimaryTimeDerivative
    variable = hco3-
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity porosity'
    prop_values = '1e-7 0.25'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  nl_abs_tol = 1e-12
  end_time = 1
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./h+]
    type = ElementIntegralVariablePostprocessor
    variable = h+
    execute_on = 'initial timestep_end'
  [../]
  [./hco3-]
    type = ElementIntegralVariablePostprocessor
    variable = hco3-
    execute_on = 'initial timestep_end'
  [../]
  [./co2_aq]
    type = ElementIntegralVariablePostprocessor
    variable = co2_aq
    execute_on = 'initial timestep_end'
  [../]
  [./co3--]
    type = ElementIntegralVariablePostprocessor
    variable = co3--
    execute_on = 'initial timestep_end'
  [../]
  [./oh-]
    type = ElementIntegralVariablePostprocessor
    variable = oh-
    execute_on = 'initial timestep_end'
  [../]
  [./ph]
    type = ElementIntegralVariablePostprocessor
    variable = ph
    execute_on = 'initial timestep_end'
  [../]
  [./total_h+]
    type = ElementIntegralVariablePostprocessor
    variable = total_h+
    execute_on = 'initial timestep_end'
  [../]
  [./total_hco3-]
    type = ElementIntegralVariablePostprocessor
    variable = total_hco3-
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  perf_graph = true
  csv = true
[]

modules/tensor_mechanics/test/tests/critical_time_step/non-isotropic_error_test.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 10
  nz = 15

  xmin = 0
  xmax = 2

  ymin = 0
  ymax = 2

  zmin = 0
  zmax = 1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
  C_ijkl = '1.684e5 0.176e5 0.176e5 1.684e5 0.176e5 1.684e5 0.754e5 0.754e5 0.754e5'
  fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./density]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '8050.0'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-4

  l_max_its = 3

  start_time = 0.0
  dt = 0.1
  num_steps = 1
  end_time = 1.0
[]

[Postprocessors]
  [./time_step]
    type = CriticalTimeStep
  [../]
[]

[Outputs]
  file_base = out
  exodus = true
  csv = true
[]

test/tests/outputs/residual/output_residual_test.i

[Mesh]
  file = sq-2blk.e
  uniform_refine = 3
[]

[Variables]
  # variable in the whole domain
  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]

  # subdomain restricted variable
  [./v]
    order = FIRST
    family = LAGRANGE
    block = '1'
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]

  [./exact_fn_v]
    type = ParsedFunction
    value = t+1
  [../]
[]

[Kernels]
  [./ie_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]


  [./ie_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]

[]

[BCs]
  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1 2 3 4'
    function = exact_fn
  [../]

  [./bottom_v]
    type = DirichletBC
    variable = v
    boundary = 5
    value = 0
  [../]

  [./top_v]
    type = FunctionDirichletBC
    variable = v
    boundary = 6
    function = exact_fn_v
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'implicit-euler'

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out
  exodus = true
[]

[Debug]
  show_var_residual = 'u v'
  show_var_residual_norms = true
[]

test/tests/transfers/multiapp_scalar_to_auxscalar_transfer/from_sub/master_wrong_order.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./a]
    family = SCALAR
    order = SIXTH
  [../]
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy]
    type = Diffusion
    variable = dummy
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    positions = '0 0 0'
    input_files = 'sub_wrong_order.i'
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppScalarToAuxScalarTransfer
    multi_app = sub
    source_variable = 'b'
    to_aux_scalar = 'a'
    direction = from_multiapp
  [../]
[]

[Outputs]
    exodus = true
[]

modules/tensor_mechanics/test/tests/ad_elastic/rz_finite_elastic-noad.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
  [./disp_z]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = StressDivergenceRZTensors
    component = 0
    variable = disp_r
    use_displaced_mesh = true
  [../]
  [./stress_z]
    type = StressDivergenceRZTensors
    component = 1
    variable = disp_z
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0
  [../]
  [./axial]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
  [./strain]
    type = ComputeAxisymmetricRZFiniteStrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
  file_base = rz_finite_elastic_out
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_2/cyl2_mu_0_2_pen_sm.i

[Mesh]
  file = cyl2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = cyl2_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = cyl2_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/problems/step6c_decoupled.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 200
  ny = 10
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
[]

[Variables]
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[AuxVariables]
  [pressure]
  []
[]

[AuxKernels]
  [pressure]
    type = FunctionAux
    variable = pressure
    function = 't*x*x*y'
    execute_on = timestep_end
  []
[]

[Kernels]
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
  [heat_convection]
    type = DarcyAdvection
    variable = temperature
    pressure = pressure
  []
[]

[BCs]
  [inlet_temperature]
    type = DirichletBC
    variable = temperature
    boundary = left
    value = 350
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = right
  []
[]

[Materials]
  [column]
    type = PackedColumn
    radius = 1
    temperature = 293.15 # 20C
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  num_steps = 300
  dt = 0.1
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/time_steppers/postprocessor_dt/postprocessor_dt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax =  1
  ymin = -1
  ymax =  1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_error]
    type = ElementL2Error
    variable = u
    function = exact_fn
    execute_on = 'initial timestep_end'
  [../]

  # Just use some postprocessor that gives values good enough for time stepping ;-)
  [./dt]
    type = ElementAverageValue
    variable = u
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'crank-nicolson'

  start_time = 1.0
  num_steps = 2
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/flux_limited_TVD_advection/fltvd_2D_angle.i

# Using Flux-Limited TVD Advection ala Kuzmin and Turek, with antidiffusion from superbee flux limiting
# 2D version with velocity = (0.1, 0.2, 0)
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  xmin = 0
  xmax = 1
  ny = 10
  ymin = 0
  ymax = 1
[]

[Variables]
  [./tracer]
  [../]
[]

[ICs]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1 | x > 0.3 | y < 0.1 | y > 0.3, 0, 1)'
  [../]
[]

[Kernels]
  [./mass_dot]
    type = MassLumpedTimeDerivative
    variable = tracer
  [../]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = superbee
    u = tracer
    velocity = '0.1 0.2 0'
  [../]
[]

[BCs]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_tracer]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = right
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 2
  dt = 0.1
[]

[Outputs]
  print_linear_residuals = false
  [./out]
    type = Exodus
    execute_on = 'initial final'
  [../]
[]

modules/porous_flow/test/tests/flux_limited_TVD_advection/jacobian_03.i

# Checking the Jacobian of Flux-Limited TVD Advection, using flux_limiter_type = vanleer
#
# The initial conditions are u=x.  This means that the argument of the flux limiter is 1, so that
# the flux_limiter=1 everywhere, irrespective of flux_limiter_type (except for 'none').  However
# superbee and minmod are nondifferentiable at this point, so using those flux_limiter_type will
# result in a poor Jacobian
#
# Here we use snes_check_jacobian instead of snes_type=test.  The former just checks the Jacobian for the
# random initial conditions, while the latter checks for u=1 and u=-1
#
# The Jacobian is correct for u=1 and u=-1, but the finite-difference scheme used by snes_type=test gives the
# wrong answer.
# For u=1, the Kuzmin-Turek scheme adds as much antidiffusion as possible, resulting in a central-difference
# version of advection (flux_limiter = 1).  This is correct, and the Jacobian is calculated correctly.
# However, when computing the Jacobian using finite differences, u is increased or decreased at a node.
# This results in that node being at a maximum or minimum, which means no antidiffusion should be added
# (flux_limiter = 0).  This corresponds to a full-upwind scheme.  So the finite-difference computes the
# Jacobian in the full-upwind scenario, which is incorrect (the original residual = 0, after finite-differencing
# the residual comes from the full-upwind scenario).
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 6
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u]
    type = FunctionIC
    variable = u
    function = 'x'
  [../]
[]

[Kernels]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = u
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = vanleer
    u = u
    velocity = '1 -2 1.5'
  [../]
[]


[Preconditioning]
  active = smp
  [./smp]
    type = SMP
    full = true
    petsc_options = '-snes_check_jacobian'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Linear # this is to force convergence even though the nonlinear residual is high: we just care about the Jacobian in this test
  end_time = 1
  num_steps = 1
  dt = 1
[]

modules/porous_flow/test/tests/numerical_diffusion/fully_saturated_action.i

# Using the fully-saturated action, which does mass lumping but no upwinding
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '1 - x'
  [../]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[PorousFlowFullySaturated]
  porepressure = porepressure
  coupling_type = Hydro
  gravity = '0 0 0'
  fp = the_simple_fluid
  mass_fraction_vars = tracer
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1
    boundary = left
  [../]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_component_1]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 1
    use_mobility = true
    flux_function = 1E3
  [../]
  [./remove_component_0]
    type = PorousFlowPiecewiseLinearSink
    variable = tracer
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 0
    use_mobility = true
    flux_function = 1E3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      viscosity = 1.0
      density0 = 1000.0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-2 0 0   0 1E-2 0   0 0 1E-2'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 101
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-1
  nl_abs_tol = 1E-8
  timestep_tolerance = 1E-3
[]

[Outputs]
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/peridynamics/test/tests/failure_tests/2D_stretch_failure_BPD.i


[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3
  cracks_start = '0.25 0.5 0'
  cracks_end = '0.75 0.5 0'

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 8
    ny = 8
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./damage]
  [../]
  [./intact_bonds_num]
  [../]
  [./critical_stretch]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./bond_status]
    type = StretchBasedFailureCriterionPD
    critical_variable = critical_stretch
    variable = bond_status
  [../]
[]

[UserObjects]
  [./damage]
    type = NodalDamageIndexPD
    variable = damage
  [../]
  [./intact_bonds]
    type = NodalNumIntactBondsPD
    variable = intact_bonds_num
  [../]
[]

[ICs]
  [./critical_stretch]
    type = ConstantIC
    variable = critical_stretch
    value = 0.001
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1002
    value = 0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1000
    function = '-0.001*t'
  [../]

  [./rbm_x]
    type = RBMPresetOldValuePD
    variable = disp_x
    boundary = 999
  [../]
  [./rbm_y]
    type = RBMPresetOldValuePD
    variable = disp_y
    boundary = 999
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = BOND
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.33
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialBPD
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  dt = 0.5
  end_time = 1
[]

[Outputs]
  file_base = 2D_stretch_failure_BPD
  exodus = true
[]

modules/level_set/examples/vortex/vortex.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmax = 1
  ymax = 1
  nx = 16
  ny = 16
  uniform_refine = 2
  elem_type = QUAD9
[]

[AuxVariables]
  [./vel_x]
    family = LAGRANGE
    order = FIRST
  [../]
  [./vel_y]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[AuxKernels]
  [./vel_x]
    type = FunctionAux
    function = vel_x
    variable = vel_x
    execute_on = 'initial timestep_begin'
  [../]
  [./vel_y]
    type = FunctionAux
    function = vel_y
    variable = vel_y
    execute_on = 'initial timestep_begin'
  [../]
[]

[Variables]
  [./phi]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[Functions]
  [./phi_exact]
    type = LevelSetOlssonBubble
    epsilon = 0.01184
    center = '0.5 0.75 0'
    radius = 0.15
  [../]
  [./vel_x]
    type = LevelSetOlssonVortex
    component = x
    reverse_time = 2
  [../]
  [./vel_y]
    type = LevelSetOlssonVortex
    component = y
    reverse_time = 2
  [../]
[]

[ICs]
  [./phi_ic]
    type = FunctionIC
    function = phi_exact
    variable = phi
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = phi
  [../]
  [./advection]
    type = LevelSetAdvection
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  [../]
[]

[Postprocessors]
  [./area]
    type = LevelSetVolume
    threshold = 0.5
    variable = phi
    location = outside
    execute_on = 'initial timestep_end'
  [../]
  [./cfl]
    type = LevelSetCFLCondition
    velocity_x = vel_x
    velocity_y = vel_y
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  start_time = 0
  end_time = 2
  scheme = crank-nicolson
  petsc_options_iname = '-pc_type -pc_sub_type'
  petsc_options_value = 'asm      ilu'
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = cfl
    scale = 0.8
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update11.i

# MC update version, with only Compressive with compressive strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Return to the stress_min = 1 plane

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 0 0  0 0 0  0 0 -2'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/phase_field/examples/nucleation/refine.i

#
# Example derived from cahn_hilliard.i demonstrating the use of Adaptivity
# with the DiscreteNucleation system. The DiscreteNucleationMarker triggers
# mesh refinement for the nucleus geometry. It is up to the user to specify
# refinement for the physics. In this example this is done using a GradientJumpIndicator
# with a ValueThresholdMarker. The nucleation system marker and the physics marker
# must be combined using a ComboMarker to combine their effect.
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 500
  ymax = 500
  elem_type = QUAD
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./c]
        free_energy = F
        mobility = M
        kappa = kappa_c
        solve_type = REVERSE_SPLIT
      [../]
    [../]
  [../]
[]

[ICs]
  [./c_IC]
    type = ConstantIC
    variable = c
    value = 0.2
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1 25'
  [../]
  [./chemical_free_energy]
    # simple double well free energy
    type = DerivativeParsedMaterial
    f_name = Fc
    args = 'c'
    constant_names       = 'barr_height  cv_eq'
    constant_expressions = '0.1          0'
    function = 16*barr_height*c^2*(1-c)^2 # +0.01*(c*plog(c,0.005)+(1-c)*plog(1-c,0.005))
    derivative_order = 2
    outputs = exodus
  [../]
  [./probability]
    # This is a made up toy nucleation rate it should be replaced by
    # classical nucleation theory in a real simulation.
    type = ParsedMaterial
    f_name = P
    args = c
    function = 'if(c<0.21,c*1e-8,0)'
    outputs = exodus
  [../]
  [./nucleation]
    # The nucleation material is configured to insert nuclei into the free energy
    # tht force the concentration to go to 0.95, and holds this enforcement for 500
    # time units.
    type = DiscreteNucleation
    f_name = Fn
    op_names  = c
    op_values = 0.90
    penalty = 5
    penalty_mode = MIN
    map = map
    outputs = exodus
  [../]
  [./free_energy]
    # add the chemical and nucleation free energy contributions together
    type = DerivativeSumMaterial
    derivative_order = 2
    args = c
    sum_materials = 'Fc Fn'
  [../]
[]

[UserObjects]
  [./inserter]
    # The inserter runs at the end of each time step to add nucleation events
    # that happend during the timestep (if it converged) to the list of nuclei
    type = DiscreteNucleationInserter
    hold_time = 50
    probability = P
  [../]
  [./map]
    # The map UO runs at the beginning of a timestep and generates a per-element/qp
    # map of nucleus locations. The map is only regenerated if the mesh changed or
    # the list of nuclei was modified.
    # The map converts the nucleation points into finite area objects with a given radius.
    type = DiscreteNucleationMap
    radius = 10
    periodic = c
    inserter = inserter
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
  [./ndof]
    type = NumDOFs
  [../]
  [./rate]
    type = DiscreteNucleationData
    value = RATE
    inserter = inserter
  [../]
  [./dtnuc]
    type = DiscreteNucleationTimeStep
    inserter = inserter
    p2nucleus = 0.0005
    dt_max = 10
  [../]
  [./update]
    type = DiscreteNucleationData
    value = UPDATE
    inserter = inserter
  [../]
  [./count]
    type = DiscreteNucleationData
    value = COUNT
    inserter = inserter
  [../]
[]

[Adaptivity]
  [./Indicators]
    [./jump]
      type = GradientJumpIndicator
      variable = c
    [../]
  [../]
  [./Markers]
    [./nuc]
      type = DiscreteNucleationMarker
      map = map
    [../]
    [./grad]
      type = ValueThresholdMarker
      variable = jump
      coarsen = 0.1
      refine = 0.2
    [../]
    [./combo]
      type = ComboMarker
      markers = 'nuc grad'
    [../]
  [../]
  marker = combo
  cycles_per_step = 3
  recompute_markers_during_cycles = true
  max_h_level = 3
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm      lu          '

  nl_max_its = 20
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  nl_abs_tol = 1.0e-10
  start_time = 0.0
  num_steps = 120

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 10
    growth_factor = 1.5
    cutback_factor = 0.5
    optimal_iterations = 8
    iteration_window = 2
    timestep_limiting_postprocessor = dtnuc
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  print_linear_residuals = false
[]

modules/xfem/test/tests/solid_mechanics_basic/sm/mesh_grow.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  geometric_cut_userobjects = 'cut_mesh'
  output_cut_plane = true
  qrule = volfrac
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = -0.4
  zmax = 0.6
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[UserObjects]
  [./cut_mesh]
    type = MeshCut3DUserObject
    mesh_file = mesh_grow.xda
    function_x = growth_func_x
    function_y = growth_func_y
    function_z = growth_func_z
# The current gold file does not grow the cutting mesh, but this is something
# that needs to be tested more in the future.
#    size_control = 0.05
#    n_step_growth = 50
  [../]
[]

[Functions]
  [./growth_func_x]
    type = ParsedFunction
    value = 5*(x-0.3)+z
  [../]
  [./growth_func_y]
    type = ParsedFunction
    value = 5*(y-0.5)+(z+x)/2
  [../]
  [./growth_func_z]
    type = ParsedFunction
    value = 5*(z-0.1)+x
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  []

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./top_trac_y]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_y]
    type = FunctionNeumannBC
    boundary = top
    variable = disp_y
    function = top_trac_y
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = bottom
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 207000
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = mesh_grow
  execute_on = 'timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/examples/mortar/mortar_gradient.i

#
# Compare a diffusion equation with (c) and without (v) periodic gradient
# constraints and a ramped sloped initial condition and value-periodic diffusion (p)
# without a slope.
#

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 40
    ny = 40
  []
  [slave_x]
    input = gen
    type = LowerDBlockFromSidesetGenerator
    sidesets = '3'
    new_block_id = 10
    new_block_name = "slave_x"
  []
  [master_x]
    input = slave_x
    type = LowerDBlockFromSidesetGenerator
    sidesets = '1'
    new_block_id = 12
    new_block_name = "master_x"
  []
  [slave_y]
    input = master_x
    type = LowerDBlockFromSidesetGenerator
    sidesets = '0'
    new_block_id = 11
    new_block_name = "slave_y"
  []
  [master_y]
    input = slave_y
    type = LowerDBlockFromSidesetGenerator
    sidesets = '2'
    new_block_id = 13
    new_block_name = "master_y"
  []
[]

[Functions]
  [./init_slope]
    # slope with a concentration spike close to the lower interface
    type = ParsedFunction
    value = 'if(x>0.4 & x<0.6 & y>0.1 & y<0.3, 3+y, y)'
  [../]
  [./init_flat]
    # no-slope and the same spike
    type = ParsedFunction
    value = 'if(x>0.4 & x<0.6 & y>0.1 & y<0.3, 3, 0)'
  [../]
[]

[Variables]
  # gradient constrained concentration
  [./c]
    order = FIRST
    family = LAGRANGE
    block = 0
    [./InitialCondition]
      type = FunctionIC
      function = init_slope
    [../]
  [../]

  # unconstrained concentrarion
  [./v]
    order = FIRST
    family = LAGRANGE
    block = 0
    [./InitialCondition]
      type = FunctionIC
      function = init_slope
    [../]
  [../]

  # flat value periodic diffusion
  [./p]
    order = FIRST
    family = LAGRANGE
    block = 0
    [./InitialCondition]
      type = FunctionIC
      function = init_flat
    [../]
  [../]

  # Lagrange multipliers for gradient component in the horizontal directon
  [./lm_left_right_x]
    order = FIRST
    family = LAGRANGE
    block = "slave_x"
  [../]
  [./lm_left_right_y]
    order = FIRST
    family = LAGRANGE
    block = "slave_x"
  [../]

  # Lagrange multipliers for gradient component in the vertical directon
  [./lm_up_down_x]
    order = FIRST
    family = LAGRANGE
    block = "slave_y"
  [../]
  [./lm_up_down_y]
    order = FIRST
    family = LAGRANGE
    block = "slave_y"
  [../]
[]

[Kernels]
  # the gradient constrained concentration
  [./diff]
    type = Diffusion
    variable = c
    block = 0
  [../]
  [./dt]
    type = TimeDerivative
    variable = c
    block = 0
  [../]

  # the un-constrained concentration
  [./diff2]
    type = Diffusion
    variable = v
    block = 0
  [../]
  [./dt2]
    type = TimeDerivative
    variable = v
    block = 0
  [../]

  # the value periodic concentration
  [./diff3]
    type = Diffusion
    variable = p
    block = 0
  [../]
  [./dt3]
    type = TimeDerivative
    variable = p
    block = 0
  [../]
[]

[Constraints]
  [./equaly_grad_x]
    type = EqualGradientConstraint
    variable = lm_up_down_x
    component = 0
    slave_variable = c
    slave_boundary = bottom
    master_boundary = top
    slave_subdomain = slave_y
    master_subdomain = master_y
    periodic = true
  [../]
  [./equaly_grad_y]
    type = EqualGradientConstraint
    variable = lm_up_down_y
    component = 1
    slave_variable = c
    slave_boundary = bottom
    master_boundary = top
    slave_subdomain = slave_y
    master_subdomain = master_y
    periodic = true
  [../]

  [./equalx_grad_x]
    type = EqualGradientConstraint
    variable = lm_left_right_x
    component = 0
    slave_variable = c
    slave_boundary = left
    master_boundary = right
    slave_subdomain = slave_x
    master_subdomain = master_x
    periodic = true
  [../]
  [./equalx_grad_y]
    type = EqualGradientConstraint
    variable = lm_left_right_y
    component = 1
    slave_variable = c
    slave_boundary = left
    master_boundary = right
    slave_subdomain = slave_x
    master_subdomain = master_x
    periodic = true
  [../]
[]

[BCs]
  # DiffusionFluxBC is the surface term in the weak form of the Diffusion equation
  [./surface]
    type = DiffusionFluxBC
    boundary = 'top bottom left right'
    variable = c
  [../]
  [./surface2]
    type = DiffusionFluxBC
    boundary = 'top bottom left right'
    variable = v
  [../]

  # for the value periodic diffusion we skip the surface term and apply value PBCs
  [./Periodic]
    [./up_down]
      variable = p
      primary = 0
      secondary = 2
      translation = '0 1 0'
    [../]
    [./left_right]
      variable = p
      primary = 1
      secondary = 3
      translation = '-1 0 0'
    [../]
  [../]
[]

[AuxVariables]
  [./diff_constraint]
    block = 0
  [../]
  [./diff_periodic]
    block = 0
  [../]
  [./diff_slope]
    block = 0
  [../]
  [./slope]
    block = 0
    [./InitialCondition]
      type = FunctionIC
      function = y
    [../]
  [../]
[]

[AuxKernels]
  # difference between the constrained and unconstrained sloped diffusions
  [./diff_constraint]
    type = ParsedAux
    variable = diff_constraint
    function = 'c-v'
    args = 'c v'
    block = 0
  [../]

  # difference between the periodic gradient constrained diffusion and the flat
  # value period diffusien with a constant slope added. This should be the same,
  # but they aren't quite because the gradient constraint affects the gradient in
  # the entire elements (i.e. a larger volume is affected by the gradient constraint
  # compared to the nodal value periodicity)
  [./diff_periodic]
    type = ParsedAux
    variable = diff_periodic
    function = 'c-p-slope'
    args = 'c p slope'
    block = 0
  [../]

  # subtract the constant slope from the gradient periodic simulation (should yield
  # almost p - per the argument above)
  [./diff_slope]
    type = ParsedAux
    variable = diff_slope
    function = 'c-slope'
    args = 'c slope'
    block = 0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  # the shift is necessary to facilitate the solve. The Lagrange multipliers
  # introduce zero-on diaginal blocks, which make the matrix hard to invert.
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = ' lu       NONZERO               1e-10'

  nl_rel_tol = 1e-11
  nl_abs_tol = 1e-10
  l_tol = 1e-10
  dt = 0.01
  num_steps = 20
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/pull_push.i

# A column of elements has its bottom pulled down, and then pushed up again.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 2
  xmin = -10
  xmax = 10
  ymin = -10
  ymax = 10
  zmin = -100
  zmax = 0
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./no_x2]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_y1]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./no_y2]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.0
  [../]

  [./topz]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0
  [../]
  [./bottomz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = back
    function = 'if(t>1,-2.0+t,-t)'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
  [./straint_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xx
    index_i = 0
    index_j = 0
  [../]
  [./straint_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xy
    index_i = 0
    index_j = 1
  [../]
  [./straint_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xz
    index_i = 0
    index_j = 2
  [../]
  [./straint_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yy
    index_i = 1
    index_j = 1
  [../]
  [./straint_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yz
    index_i = 1
    index_j = 2
  [../]
  [./straint_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zz
    index_i = 2
    index_j = 2
  [../]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[UserObjects]
  [./coh_irrelevant]
    type = TensorMechanicsHardeningCubic
    value_0 = 2E6
    value_residual = 1E6
    internal_limit = 0.01
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.5
    value_residual = 0.2
    internal_limit = 0.01
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.166666666667
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 2E6
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E8
    value_residual = 0.0
    internal_limit = 0.01
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 6.4e9
    shear_modulus = 6.4e9 # young 16MPa, Poisson 0.25
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh_irrelevant
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 10
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-2
    perfect_guess = false
    min_step_size = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -snes_linesearch_monitor'
    petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
    petsc_options_value = ' asm      2              lu            gmres     200'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason'
  line_search = bt
  nl_abs_tol = 1E1
  nl_rel_tol = 1e-5
  l_tol = 1E-10

  l_max_its = 100
  nl_max_its = 100

  end_time = 3.0
  dt = 0.1
  type = Transient
[]

[Outputs]
  file_base = pull_push
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/eigenstrain/reducedOrderRZLinearConstant.i

#
# This test checks whether the ComputeReducedOrderEigenstrain is functioning properly.
#
# If instead of 'fred', 'thermal_eigenstrain' is given to
# eigenstrain_names in the Modules/TensorMechanics/Master/all block, the output will be
# identical since the thermal strain is constant in the elements.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 1
  xmax = 3
  xmin = 1
  ymax = 1
  ymin = 0
[]

[Functions]
  [./tempBC]
    type = ParsedFunction
    value = '700+2*t*t'
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 700
  [../]
[]

[AuxVariables]
  [./hydro_constant]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydro_first]
    order = FIRST
    family = MONOMIAL
  [../]
  [./hydro_second]
    order = SECOND
    family = MONOMIAL
  [../]
  [./sxx_constant]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sxx_first]
    order = FIRST
    family = MONOMIAL
  [../]
  [./sxx_second]
    order = SECOND
    family = MONOMIAL
  [../]
  [./szz_constant]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./szz_first]
    order = FIRST
    family = MONOMIAL
  [../]
  [./szz_second]
    order = SECOND
    family = MONOMIAL
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        add_variables = true
        strain = SMALL
        incremental = true
        temperature = temp
        eigenstrain_names = 'fred' #'thermal_eigenstrain'
      [../]
    [../]
  [../]
[]

[Kernels]
  [./heat]
    type = Diffusion
    variable = temp
  [../]
[]

[AuxKernels]
  [./hydro_constant_aux]
    type = RankTwoScalarAux
    variable = hydro_constant
    rank_two_tensor = stress
    scalar_type = Hydrostatic
  [../]
  [./hydro_first_aux]
    type = RankTwoScalarAux
    variable = hydro_first
    rank_two_tensor = stress
    scalar_type = Hydrostatic
  [../]
  [./hydro_second_aux]
    type = RankTwoScalarAux
    variable = hydro_second
    rank_two_tensor = stress
    scalar_type = Hydrostatic
  [../]
  [./sxx_constant_aux]
    type = RankTwoAux
    variable = sxx_constant
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./sxx_first_aux]
    type = RankTwoAux
    variable = sxx_first
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./sxx_second_aux]
    type = RankTwoAux
    variable = sxx_second
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./szz_constant_aux]
    type = RankTwoAux
    variable = szz_constant
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
  [./szz_first_aux]
    type = RankTwoAux
    variable = szz_first
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
  [./szz_second_aux]
    type = RankTwoAux
    variable = szz_second
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom top'
    value = 0.0
  [../]

  [./temp_right]
    type = FunctionDirichletBC
    variable = temp
    boundary = right
    function = tempBC
  [../]
  [./temp_left]
    type = FunctionDirichletBC
    variable = temp
    boundary = left
    function = tempBC
  [../]
[]


[Materials]
  [./fuel_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0
  [../]
  [./fuel_thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-6
    temperature = temp
    stress_free_temperature = 700.0
    eigenstrain_name = 'thermal_eigenstrain'
  [../]
  [./reduced_order_eigenstrain]
    type = ComputeReducedOrderEigenstrain
    input_eigenstrain_names = 'thermal_eigenstrain'
    eigenstrain_name = 'fred'
  [../]
[]


[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew '
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type'
  petsc_options_value = '70 hypre boomeramg'

  dt = 1
  num_steps = 10
  nl_rel_tol = 1e-8
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/brineco2_liquid.i

# Tests correct calculation of properties derivatives in PorousFlowFluidState
# for conditions that give a single liquid phase

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[AuxVariables]
  [./xnacl]
    initial_condition = 0.05
  [../]
[]

[Variables]
  [./pgas]
  [../]
  [./zi]
  [../]
[]

[ICs]
  [./pgas]
    type = RandomIC
    min = 5e6
    max = 8e6
    variable = pgas
  [../]
  [./z_liquid]
    type = RandomIC
    min = 0.01
    max = 0.03
    variable = zi
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = zi
    fluid_component = 1
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    variable = pgas
    fluid_component = 0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    variable = zi
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
    pc_max = 1e4
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = zi
    temperature_unit = Celsius
    xnacl = xnacl
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[AuxVariables]
  [./sgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./sgas]
    type = PorousFlowPropertyAux
    property = saturation
    phase = 1
    variable = sgas
  [../]
[]

[Postprocessors]
  [./sgas_min]
    type = ElementExtremeValue
    variable = sgas
    value_type = min
  [../]
  [./sgas_max]
    type = ElementExtremeValue
    variable = sgas
    value_type = max
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_3/ring3_mu_0_2_pen.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring3_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y11]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = ring3_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = ring3_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x11 disp_y11 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    tangential_tolerance = 1e-3
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

modules/phase_field/test/tests/PolynomialFreeEnergy/direct_order6_test.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmax = 125
[]

[GlobalParams]
  polynomial_order = 6
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 60.0
    invalue = 1.0
    outvalue = 0.1
    int_width = 60.0
    variable = c
  [../]
[]

[Kernels]
  [./local_energy]
    type = CahnHilliard
    variable = c
    f_name = F
  [../]
  [./gradient_energy]
    type = CHInterface
    variable = c
    mob_name = M
    kappa_name = kappa
  [../]
  [./cdot]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./Copper]
    type = PFParamsPolyFreeEnergy
    c = c
    T = 1000 # K
    int_width = 30.0
    length_scale = 1.0e-9
    time_scale = 1.0e-9
    D0 = 3.1e-5 # m^2/s, from Brown1980
    Em = 0.71 # in eV, from Balluffi1978 Table 2
    Ef = 1.28 # in eV, from Balluffi1978 Table 2
    surface_energy = 0.7 # Total guess
  [../]
  [./free_energy]
    type = PolynomialFreeEnergy
    c = c
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = NEWTON
  petsc_options_iname = -pc_type
  petsc_options_value = lu

  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8

  start_time = 0.0
  num_steps = 100
  dt = 4
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/phase_field_kernels/CahnHilliard.i

#
# Test the non-split parsed function free enery Cahn-Hilliard Bulk kernel
# The free energy used here has the same functional form as the CHPoly kernel
# If everything works, the output of this test should replicate the output
# of marmot/tests/chpoly_test/CHPoly_test.i (exodiff match)
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 16
  ny = 16
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./cv]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./InitialCondition]
    type = CrossIC
    x1 = 5.0
    y1 = 5.0
    x2 = 45.0
    y2 = 45.0
    variable = cv
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = cv
  [../]
  [./CHSolid]
    type = CahnHilliard
    variable = cv
    f_name = F
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = cv
    mob_name = M
    kappa_name = kappa_c
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1 0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'cv'
    function = '(1-cv)^2 * (1+cv)^2'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 15
  l_tol = 1.0e-4
  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 2
  dt = 0.7
[]

[Outputs]
  [./out]
    type = Exodus
    refinements = 1
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_2/ring2_template2_sm.i

[Mesh]
  file = ring2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/poro01.i

# tests of the poroelasticity kernel, PoroMechanicsCoupling
# in conjunction with the usual StressDivergenceTensors Kernel
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./p]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -1
    max = 1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -1
    max = 1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -1
    max = 1
  [../]
  [./p]
    type = RandomIC
    variable = p
    min = -1
    max = 1
  [../]
[]

[Kernels]
  [./unimportant_p]
    type = TimeDerivative
    variable = p
  [../]
  [./grad_stress_x]
    type = StressDivergenceTensors
    displacements = 'disp_x disp_y disp_z'
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./poro_x]
    type = PoroMechanicsCoupling
    variable = disp_x
    porepressure = p
    component = 0
  [../]
  [./poro_y]
    type = PoroMechanicsCoupling
    variable = disp_y
    porepressure = p
    component = 1
  [../]
  [./poro_z]
    type = PoroMechanicsCoupling
    variable = disp_z
    porepressure = p
    component = 2
  [../]
  [./This_is_not_poroelasticity._It_is_checking_diagonal_jacobian]
    type = PoroMechanicsCoupling
    variable = disp_x
    porepressure = disp_x
    component = 0
  [../]
  [./This_is_not_poroelasticity._It_is_checking_diagonal_jacobian_again]
    type = PoroMechanicsCoupling
    variable = disp_x
    porepressure = disp_x
    component = 1
  [../]
  [./This_is_not_poroelasticity._It_is_checking_offdiagonal_jacobian_for_disps]
    type = PoroMechanicsCoupling
    variable = disp_x
    porepressure = disp_y
    component = 2
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./biot]
    type = GenericConstantMaterial
    prop_names = biot_coefficient
    prop_values = 0.54
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/sliding_block/sliding/dirac/frictionless_kinematic.i

#  This is a benchmark test that checks Dirac based frictionless
#  contact using the kinematic method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./stiffStuff]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]  # Materials

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg  4    101'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 200
  nl_max_its = 1000
  dt = 0.05
  end_time = 10
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+6
    formulation = kinematic
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/solid_mechanics/test/tests/rate_dep_smear_crack/crack_2d_sent.i

#
# Test to exercise the exponential stress release
#
# Stress vs. strain should show a linear relationship until cracking,
#   an exponential stress release, a linear relationship back to zero
#   strain, a linear relationship with the original stiffness in
#   compression and then back to zero strain, a linear relationship
#   back to the exponential curve, and finally further exponential
#   stress release.
#

[Mesh]
  file = crack-mesh.e
  displacements = 'disp_x disp_y'
  uniform_refine = 0
[]

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

[]

[AuxVariables]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./resid_x]
    order = FIRST
    family = LAGRANGE
#    block = 1
  [../]
  [./resid_y]
    order = FIRST
    family = LAGRANGE
#    block = 1
  [../]

  [./damage]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Functions]
  [./tfunc]
    type = ParsedFunction
    value = '0.001 * t'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_x = resid_x
    save_in_disp_y = resid_y
  [../]
[]


[AuxKernels]
  [./strain_xx]
    type = MaterialTensorAux
    variable = strain_xx
    tensor = total_strain
    index = 0
  [../]

  [./strain_yy]
    type = MaterialTensorAux
    variable = strain_yy
    tensor = total_strain
    index = 1
  [../]

  [./strain_xy]
    type = MaterialTensorAux
    variable = strain_xx
    tensor = total_strain
    index = 3
  [../]

  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    tensor = stress
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    variable = stress_xy
    tensor = stress
    index = 3
  [../]

  [./damage]
    type = MaterialStdVectorAux
    variable = damage
    property = intvar
    index = 0
  [../]

[]


[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 3
    function = tfunc
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]
[]

[Materials]
  [./elastic]
    type = SolidModel
    block = 1
    youngs_modulus = 186.5e9
    poissons_ratio = .316
    disp_x = disp_x
    disp_y = disp_y
    formulation = linear
    constitutive_model = crack
  [../]
  [./crack]
    type = RateDepSmearIsoCrackModel
    block = 1
    critical_energy = 1e6
    ref_damage_rate = 1e-3
    tol = 1e-5
    maxiter = 20
    exponent = 1.0
    nstate = 2
    intvar_incr_tol = 1000.0
    input_random_scaling_var = true
    random_scaling_var = 1e10
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  line_search = 'none'
  nl_max_its = 20
  nl_rel_tol = 1e-15
  l_tol = 1e-1
  dt = 0.05
  dtmin = 0.05
  num_steps = 2
[]

[Outputs]
  exodus = true
  csv = true
  gnuplot = true
[]

[Postprocessors]
  [./resid_x]
    type = NodalSum
    variable = resid_x
    boundary = 3
  [../]
  [./resid_y]
    type = NodalSum
    variable = resid_y
    boundary = 3
  [../]
[]

test/tests/restart/restart_transient_from_steady/steady_with_sub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./power_density]
  [../]
[]

[Variables]
  [./temp]
  [../]
[]

[Kernels]
  [./heat_conduction]
     type = Diffusion
     variable = temp
  [../]
  [./heat_ie]
    type = TimeDerivative
    variable = temp
  [../]
  [./heat_source_fuel]
    type = CoupledForce
    variable = temp
    v = power_density
  [../]
[]

[BCs]
  [bc]
    type = DirichletBC
    variable = temp
    boundary = '0 1 2 3'
    value = 450
  []
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart '
  petsc_options_value = 'hypre boomeramg 100'

  start_time = 0
  end_time = 10
  dt = 1.0
  # steady_state_detection = true

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-7
[]

[Postprocessors]
  [./temp_fuel_avg]
    type = ElementAverageValue
    variable = temp
    execute_on = 'initial timestep_end'
  [../]
  [./pwr_density]
    type = ElementIntegralVariablePostprocessor
    variable = power_density
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  perf_graph = true
  exodus = true
  color = true
  csv = true
  checkpoint = true
[]

modules/phase_field/tutorials/spinodal_decomposition/s3_decomp.i

#
# Simulation of iron-chromium alloy decomposition using simplified conditions.
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  elem_type = QUAD4
  nx = 25
  ny = 25
  nz = 0
  xmin = 0
  xmax = 25
  ymin = 0
  ymax = 25
  zmin = 0
  zmax = 0
  uniform_refine = 2
[]

[Variables]
  [./c]   # Mole fraction of Cr (unitless)
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]   # Chemical potential (eV/mol)
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./concentrationIC]   # 46.774 mol% Cr with variations
    type = RandomIC
    min = 0.44774
    max = 0.48774
    seed = 210
    variable = c
  [../]
[]

[BCs]
  [./Periodic]
    [./c_bcs]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Kernels]
  [./w_dot]
    variable = w
    v = c
    type = CoupledTimeDerivative
  [../]
  [./coupled_res]
    variable = w
    type = SplitCHWRes
    mob_name = M
  [../]
  [./coupled_parsed]
    variable = c
    type = SplitCHParsed
    f_name = f_loc
    kappa_name = kappa_c
    w = w
  [../]
[]

[Materials]
  # d is a scaling factor that makes it easier for the solution to converge
  # without changing the results. It is defined in each of the materials and
  # must have the same value in each one.
  [./constants]
    # Define constant values kappa_c and M. Eventually M will be replaced with
    # an equation rather than a constant.
    type = GenericFunctionMaterial
    prop_names = 'kappa_c M'
    prop_values = '8.125e-16*6.24150934e+18*1e+09^2*1e-27
                   2.2841e-26*1e+09^2/6.24150934e+18/1e-27'
                   # kappa_c*eV_J*nm_m^2*d
                   # M*nm_m^2/eV_J/d
  [../]
  [./local_energy]
    # Defines the function for the local free energy density as given in the
    # problem, then converts units and adds scaling factor.
    type = DerivativeParsedMaterial
    f_name = f_loc
    args = c
    constant_names = 'A   B   C   D   E   F   G  eV_J  d'
    constant_expressions = '-2.446831e+04 -2.827533e+04 4.167994e+03 7.052907e+03
                            1.208993e+04 2.568625e+03 -2.354293e+03
                            6.24150934e+18 1e-27'
    function = 'eV_J*d*(A*c+B*(1-c)+C*c*log(c)+D*(1-c)*log(1-c)+
                E*c*(1-c)+F*c*(1-c)*(2*c-1)+G*c*(1-c)*(2*c-1)^2)'
    derivative_order = 2
  [../]
[]

[Postprocessors]
  [./step_size]             # Size of the time step
    type = TimestepSize
  [../]
  [./iterations]            # Number of iterations needed to converge timestep
    type = NumNonlinearIterations
  [../]
  [./nodes]                 # Number of nodes in mesh
    type = NumNodes
  [../]
  [./evaluations]           # Cumulative residual calculations for simulation
    type = NumResidualEvaluations
  [../]
  [./active_time]           # Time computer spent on simulation
    type = PerfGraphData
    section_name = "Root"
    data_type = total
  [../]
[]

[Preconditioning]
  [./coupled]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  l_max_its = 30
  l_tol = 1e-6
  nl_max_its = 50
  nl_abs_tol = 1e-9
  end_time = 604800   # 7 days
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type
                         -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly
                         ilu          1'
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 10
    cutback_factor = 0.8
    growth_factor = 1.5
    optimal_iterations = 7
  [../]
  [./Adaptivity]
    coarsen_fraction = 0.1
    refine_fraction = 0.7
    max_h_level = 2
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
  console = true
  csv = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/porous_flow/test/tests/jacobian/eff_stress04.i

# 2phase (PS)
# vanGenuchten, constant-bulk density for each phase, constant porosity, 2components (that exist in both phases)
# unsaturated
# RZ coordinate system
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./sgas]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = 0
    max = 1
  [../]
  [./sgas]
    type = RandomIC
    variable = sgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./grad0]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 0
    variable = ppwater
  [../]
  [./grad1]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 1
    variable = sgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
    pc_max = 10
    sat_lr = 0.01
  [../]
[]

[Materials]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

modules/richards/test/tests/warrick_lomen_islas/wli02.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 1
  xmin = -1000
  xmax = 0
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 10
    bulk_mod = 2E9
  [../]
  [./SeffBW]
    type = RichardsSeff1BWsmall
    Sn = 0.0
    Ss = 1.0
    C = 1.5
    las = 2
  [../]
  [./RelPermBW]
    type = RichardsRelPermBW
    Sn = 0.0
    Ss = 1.0
    Kn = 0
    Ks = 1
    C = 1.5
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E2
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -1E-4
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffBW
    pressure_vars = pressure
  [../]
[]


[BCs]
  active = 'base'
  [./base]
    type = DirichletBC
    variable = pressure
    boundary = 'left'
    value = -1E-4
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.25
    mat_permeability = '1 0 0  0 1 0  0 0 1'
    density_UO = DensityConstBulk
    relperm_UO = RelPermBW
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffBW
    viscosity = 4
    gravity = '-0.1 0 0'
    linear_shape_fcns = true
  [../]
[]

[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''
    petsc_options_iname = '-ksp_type -pc_type -ksp_rtol -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 1E-10 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 100
  dt = 5
[]


[Outputs]
  file_base = wli02
  interval = 10000
  execute_on = 'timestep_end final'
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/pull_and_shear_1step.i

# Part of the bottom (minimum z) is pulled down by a Preset displacement
# This causes tensile failure in the elements immediately above.
# Because only the bottom row of elements ever fail, and because these
# fail in the first nonlinear step, Moose correctly converges in
# 1 nonlinear step, despite this problem being inelastic.
# (If the problem had lower cohesion, then the top row would also
# fail, but in the second nonlinear step, and so the simulation
# would require at least two nonlinear steps.)
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 2
    ny = 1
    nz = 2
    xmin = -10
    xmax = 10
    ymin = -10
    ymax = 10
    zmin = -100
    zmax = 0
  []
  [bottomz_middle]
    type = BoundingBoxNodeSetGenerator
    new_boundary = bottomz_middle
    bottom_left = '-1 -15 -105'
    top_right = '1 15 -95'
    input = generated_mesh
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./no_x2]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_y1]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./no_y2]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.0
  [../]

  [./z_fixed_sides_xmin]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0
  [../]
  [./z_fixed_sides_xmax]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value = 0
  [../]

  [./bottomz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = bottomz_middle
    function = -1
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
  [./straint_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xx
    index_i = 0
    index_j = 0
  [../]
  [./straint_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xy
    index_i = 0
    index_j = 1
  [../]
  [./straint_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xz
    index_i = 0
    index_j = 2
  [../]
  [./straint_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yy
    index_i = 1
    index_j = 1
  [../]
  [./straint_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yz
    index_i = 1
    index_j = 2
  [../]
  [./straint_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zz
    index_i = 2
    index_j = 2
  [../]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[UserObjects]
  [./coh_irrelevant]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E60
    value_residual = 1E60
    internal_limit = 0.01E8
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.5
    value_residual = 0.2
    internal_limit = 0.01E8
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.166666666667
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E80
    value_residual = 1E80
    internal_limit = 0.01
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '6.4E9 6.4E9'  # young 16MPa, Poisson 0.25
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh_irrelevant
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 1
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-2
    perfect_guess = true
    min_step_size = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -snes_linesearch_monitor'
    petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
    petsc_options_value = ' asm      2              lu            gmres     200'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason'
  line_search = bt
  nl_abs_tol = 1E1
  nl_rel_tol = 1e-5
  l_tol = 1E-10

  l_max_its = 100
  nl_max_its = 100

  end_time = 1.0
  dt = 1.0
  type = Transient
[]

[Outputs]
  file_base = pull_and_shear_1step
  exodus = true
[]

modules/richards/test/tests/jacobian_2/jnQ2P_bh2.i

# quick two phase with injection borehole

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]


[UserObjects]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.3 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = Q2PRelPermPowerGas
    simm = 0.1
    n = 3
  [../]
  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pp]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 1
    [../]
  [../]
  [./sat]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]



[Q2P]
  porepressure = pp
  saturation = sat
  water_density = DensityWater
  water_relperm = RelPermWater
  water_viscosity = 1
  gas_density = DensityGas
  gas_relperm = RelPermGas
  gas_viscosity = 1
  diffusivity = 0
[]


[DiracKernels]
  [./bh_water]
    type = Q2PBorehole
    bottom_pressure = 2
    point_file = jn30.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = sat
    unit_weight = '0 0 0'
    character = -1E12
    fluid_density = DensityWater
    fluid_relperm = RelPermWater
    other_var = pp
    var_is_porepressure = false
    fluid_viscosity = 0.5
  [../]
  [./bh_gas]
    type = Q2PBorehole
    bottom_pressure = 1.5
    point_file = jn30.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = -1E12
    fluid_density = DensityGas
    fluid_relperm = RelPermGas
    other_var = sat
    var_is_porepressure = true
    fluid_viscosity = 0.25
  [../]
[]



[Materials]
  [./rock]
    type = Q2PMaterial
    block = 0
    mat_porosity = 0 # just so we get virtually no contributions from the time derivatives
    mat_permeability = '1.1E-20 0 0  0 2.2E-20 0  0 0 3.3E-20'
    gravity = '1 2 3'
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jnQ2P_bh2
  exodus = false
[]

modules/tensor_mechanics/test/tests/generalized_plane_strain/generalized_plane_strain_scalar_vector.i

[Mesh]
  file = 2squares.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./scalar_strain_zz1]
    order = FIRST
    family = SCALAR
  [../]
  [./scalar_strain_zz2]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./saved_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./aux_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Postprocessors]
  [./react_z1]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    block = 1
  [../]
  [./react_z2]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    block = 2
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./GeneralizedPlaneStrain]
      [./gps1]
        use_displaced_mesh = true
        displacements = 'disp_x disp_y'
        scalar_out_of_plane_strain = scalar_strain_zz1
        block = '1'
      [../]
      [./gps2]
        use_displaced_mesh = true
        displacements = 'disp_x disp_y'
        scalar_out_of_plane_strain = scalar_strain_zz2
        block = '2'
      [../]
    [../]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = false
    displacements = 'disp_x disp_y'
    temperature = temp
    save_in = 'saved_x saved_y'
    block = '1 2'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]

  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./aux_strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = aux_strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottom1x]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottom1y]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
  [./bottom2x]
    type = DirichletBC
    boundary = 2
    variable = disp_x
    value = 0.0
  [../]
  [./bottom2y]
    type = DirichletBC
    boundary = 2
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
    block = '1 2'
  [../]
  [./strain1]
    type = ComputePlaneSmallStrain
    displacements = 'disp_x disp_y'
    subblock_index_provider = test_subblock_index_provider
    scalar_out_of_plane_strain = 'scalar_strain_zz1 scalar_strain_zz2'
    block = '1 2'
    eigenstrain_names = eigenstrain
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    block = '1 2'
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = '1 2'
  [../]
[]

[UserObjects]
  [./test_subblock_index_provider]
    type = TestSubblockIndexProvider
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-10

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
  num_steps = 5000
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/actually_explicit_euler/diverged.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./nan]
    type = NanKernel
    variable = u
    timestep_to_nan = 4
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 'left'
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 'right'
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.001
  l_tol = 1e-12
  dtmin = 1e-8

  [./TimeIntegrator]
    type = ActuallyExplicitEuler
    solve_type = lump_preconditioned
  [../]
[]

[Outputs]
  exodus = false
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_2/brick2_mu_0_2_pen_sm.i

[Mesh]
  file = brick2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
  [./tang_force_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    save_in_disp_x = saved_x
    save_in_disp_y = saved_y
    save_in_disp_z = saved_z
    diag_save_in_disp_x = diag_saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_z = diag_saved_z
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_x26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_x
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./disp_y26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  file_base = brick2_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = brick2_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x7 disp_y7 disp_x26 disp_y26 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+7
  [../]
[]

test/tests/transfers/multiapp_scalar_to_auxscalar_transfer/to_sub/master_wrong_order.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./a]
    family = SCALAR
    order = FIFTH
  [../]
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy]
    type = Diffusion
    variable = dummy
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    positions = '0 0 0'
    input_files = 'sub_wrong_order.i'
  [../]
[]

[Transfers]
  [./to_sub]
    type = MultiAppScalarToAuxScalarTransfer
    multi_app = sub
    source_variable = 'a'
    to_aux_scalar = 'b'
    direction = to_multiapp
  [../]
[]

[Outputs]
    exodus = true
[]

modules/tensor_mechanics/test/tests/multi/three_surface03.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 0.5E-6m in y direction and 2.0E-6 in z direction.
# trial stress_yy = 0.5 and stress_zz = 2.0
#
# Then SimpleTester0 and SimpleTester2 should activate and the algorithm will return to
# the corner stress_yy=0.5, stress_zz=1
# internal0 should be 1.0, and others zero

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.5E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '2.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface03
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/richards/test/tests/recharge_discharge/rd02.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 120
  ny = 1
  xmin = 0
  xmax = 6
  ymin = 0
  ymax = 0.05
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1 10 500 5000 50000'
    x = '0 10 100 1000 10000 500000'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1E3
    bulk_mod = 2E7
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.336
    al = 1.43E-4
  [../]
  [./RelPermPower]
    type = RichardsRelPermVG1
    scut = 0.99
    simm = 0.0
    m = 0.336
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E+0
  [../]
[]



[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]




[BCs]
  active = 'fix_bot'
  [./fix_bot]
    type = DirichletBC
    variable = pressure
    boundary = 'left'
    value = 0.0
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.33
    mat_permeability = '0.295E-12 0 0  0 0.295E-12 0  0 0 0.295E-12'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1.01E-3
    gravity = '-10 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''

    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-13 1E-15 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 345600

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]


[Outputs]
  file_base = rd02
  interval = 100000
  execute_on = 'initial final'
  exodus = true
[]

modules/phase_field/test/tests/MultiPhase/acmultiinterface.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 10
  nz = 0
  xmin = -10
  xmax = 10
  ymin = -5
  ymax = 5
  elem_type = QUAD4
[]

[Variables]
  [./eta1]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = -3.5
      y1 =  0.0
      radius = 4.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 2.0
    [../]
  [../]
  [./eta2]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 =  3.5
      y1 =  0.0
      radius = 4.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 2.0
    [../]
  [../]
  [./eta3]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SpecifiedSmoothCircleIC
      x_positions = '-4.0 4.0'
      y_positions = ' 0.0 0.0'
      z_positions = ' 0.0 0.0'
      radii = '4.0 4.0'
      invalue = 0.1
      outvalue = 0.9
      int_width = 2.0
    [../]
  [../]

  [./lambda]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1.0
  [../]
[]

[Kernels]
  [./deta1dt]
    type = TimeDerivative
    variable = eta1
  [../]
  [./ACBulk1]
    type = AllenCahn
    variable = eta1
    args = 'eta2 eta3'
    mob_name = L1
    f_name = F
  [../]
  [./ACInterface1]
    type = ACMultiInterface
    variable = eta1
    etas = 'eta1 eta2 eta3'
    mob_name = L1
    kappa_names = 'kappa11 kappa12 kappa13'
  [../]
  [./lagrange1]
    type = SwitchingFunctionConstraintEta
    variable = eta1
    h_name   = h1
    lambda = lambda
  [../]

  [./deta2dt]
    type = TimeDerivative
    variable = eta2
  [../]
  [./ACBulk2]
    type = AllenCahn
    variable = eta2
    args = 'eta1 eta3'
    mob_name = L2
    f_name = F
  [../]
  [./ACInterface2]
    type = ACMultiInterface
    variable = eta2
    etas = 'eta1 eta2 eta3'
    mob_name = L2
    kappa_names = 'kappa21 kappa22 kappa23'
  [../]
  [./lagrange2]
    type = SwitchingFunctionConstraintEta
    variable = eta2
    h_name   = h2
    lambda = lambda
  [../]

  [./deta3dt]
    type = TimeDerivative
    variable = eta3
  [../]
  [./ACBulk3]
    type = AllenCahn
    variable = eta3
    args = 'eta1 eta2'
    mob_name = L3
    f_name = F
  [../]
  [./ACInterface3]
    type = ACMultiInterface
    variable = eta3
    etas = 'eta1 eta2 eta3'
    mob_name = L3
    kappa_names = 'kappa31 kappa32 kappa33'
  [../]
  [./lagrange3]
    type = SwitchingFunctionConstraintEta
    variable = eta3
    h_name   = h3
    lambda = lambda
  [../]

  [./lagrange]
    type = SwitchingFunctionConstraintLagrange
    variable = lambda
    etas    = 'eta1 eta2 eta3'
    h_names = 'h1   h2   h3'
    epsilon = 0
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'Fx  L1 L2 L3  kappa11 kappa12 kappa13 kappa21 kappa22 kappa23 kappa31 kappa32 kappa33'
    prop_values = '0   1  1  1   1       1       1       1       1       1       1       1       1      '
  [../]

  [./etasummat]
    type = ParsedMaterial
    f_name = etasum
    args = 'eta1 eta2 eta3'
    material_property_names = 'h1 h2 h3'
    function = 'h1+h2+h3'
  [../]

  [./switching1]
    type = SwitchingFunctionMaterial
    function_name = h1
    eta = eta1
    h_order = SIMPLE
  [../]
  [./switching2]
    type = SwitchingFunctionMaterial
    function_name = h2
    eta = eta2
    h_order = SIMPLE
  [../]
  [./switching3]
    type = SwitchingFunctionMaterial
    function_name = h3
    eta = eta3
    h_order = SIMPLE
  [../]

  [./barrier]
    type = MultiBarrierFunctionMaterial
    etas = 'eta1 eta2 eta3'
  [../]

  [./free_energy]
    type = DerivativeMultiPhaseMaterial
    f_name = F
    # we use a constant free energy (GeneriConstantmaterial property Fx)
    fi_names = 'Fx  Fx  Fx'
    hi_names = 'h1  h2  h3'
    etas     = 'eta1 eta2 eta3'
    # the free energy is given by the MultiBarrierFunctionMaterial only
    W = 1
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'PJFNK'
  #petsc_options = '-snes_ksp -snes_ksp_ew'
  #petsc_options = '-ksp_monitor_snes_lg-snes_ksp_ew'
  #petsc_options_iname = '-ksp_gmres_restart'
  #petsc_options_value = '1000              '

  l_max_its = 15
  l_tol = 1.0e-6

  nl_max_its = 50
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 2
  dt = 0.2
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/heat_advection01_fully_saturated.i

# 1phase, using fully-saturated version, heat advection
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./temp]
  [../]
  [./pp]
  [../]
[]

[ICs]
  [./temp]
    type = RandomIC
    variable = temp
    max = 1.0
    min = 0.0
  [../]
  [./pp]
    type = RandomIC
    variable = pp
    max = 0.0
    min = -1.0
  [../]
[]

[Kernels]
  [./pp]
    type = TimeDerivative
    variable = pp
  [../]
  [./heat_advection]
    type = PorousFlowFullySaturatedHeatAdvection
    variable = temp
    gravity = '1 2 3'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 1.1
      thermal_expansion = 0
      viscosity = 1
      cv = 1.1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./PS]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Preconditioning]
  active = check
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/geomsearch/3d_moving_penetration/pl_test1tt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test1tt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test1tt_out
  exodus = true
[]

modules/phase_field/test/tests/initial_conditions/SmoothCircleIC.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c]
    type = SmoothCircleIC
    variable = c
    x1 = 25.0
    y1 = 25.0
    radius = 6.0
    invalue = 1.0
    outvalue = -0.8
    int_width = 4.0
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CHMath
    variable = c
    mob_name = M
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 20
  l_tol = 1.0e-4
  nl_max_its = 40
  nl_rel_tol = 1e-9

  start_time = 0.0
  num_steps = 1
  dt = 2.0
[]

[Outputs]
  exodus = false
  [./out]
    type = Exodus
    refinements = 2
  [../]
[]

test/tests/variables/coupled_scalar/coupled_scalar_old.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Functions]
  [./lin1_fn]
    type = ParsedFunction
    value = t
  [../]
  [./lin2_fn]
    type = ParsedFunction
    value = 't+1'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux_scalar]
    order = SECOND
    family = SCALAR
  [../]
  [./coupled]
  [../]
  [./coupled_1]
  [../]
[]

[ICs]
  [./aux_scalar_ic]
    variable = aux_scalar
    values = '1.2 4.3'
    type = ScalarComponentIC
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./coupled]
    type = CoupledScalarAux
    variable = coupled
    coupled = aux_scalar
  [../]
  [./coupled_1]
    # Coupling to the "1" component of an aux scalar
    type = CoupledScalarAux
    variable = coupled_1
    component = 1
    coupled = aux_scalar
  [../]
[]

[AuxScalarKernels]
  [./aux_scalar_k]
    type = FunctionScalarAux
    variable = aux_scalar
    function = 'lin1_fn lin2_fn'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.1
  num_steps = 4
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/restart/restart_subapp_not_master/two_step_solve_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax =  1
  ymin = -1
  ymax =  1
  nx = 2
  ny = 2
  elem_type = QUAD9
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*t*(x*x+y*y)
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = 2*t*(x*x+y*y)-4*t*t
  [../]
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[ICs]
  active = ''
  [./u_var]
    type = FunctionIC
    variable = u
    function = exact_fn
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  start_time = 2.0
  end_time = 4.0
  dt = 1.0
[]

[MultiApps]
  [./full_solve]
    type = FullSolveMultiApp
    execute_on = initial
    positions = '0 0 0'
    # input file will come from cli-args
  [../]
[]

[Transfers]
  [./transfer_u]
    type = MultiAppProjectionTransfer
    multi_app = full_solve
    direction = FROM_MULTIAPP
    variable = u
    source_variable = u
  [../]
[]

[Outputs]
  #file_base will come from cli-args
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_2/ring2_mu_0_2_pen_sm.i

[Mesh]
  file = ring2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]


[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = ring2_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = ring2_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/solid_mechanics/LinearStrainHardening/LinearStrainHardening_test.i

#

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = LinearStrainHardening_test.e
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_mag]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t/5.0
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]

  [./plastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]

  [./plastic_strain_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]

  [./plastic_strain_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]

  [./plastic_strain_mag]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = plastic_strain_mag
  [../]

 []


[BCs]

  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

[]


[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'isoplas'
    block = '1'
  [../]
  [./isoplas]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 2.4e2
    hardening_constant = 1206
    relative_tolerance = 1e-25
    absolute_tolerance = 1e-05
  [../]
[]


[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
  start_time = 0.0
  end_time = 0.0105
#  num_steps = 100
  dt = 1.5e-3
[]



[Outputs]
  file_base = LinearStrainHardeningRestart2_out
  exodus = true
[]

modules/combined/test/tests/mortar_tm/2d/frictionless_second/finite_rr.i

E_block = 1e7
E_plank = 1e7
elem = QUAD9
order = SECOND
name = 'finite_rr'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
    extra_vector_tags = 'ref'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
  nl_abs_tol = 1e-7
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/combined/test/tests/gap_heat_transfer_convex/gap_heat_transfer_convex_sm.i

[Mesh]
  file = gap_heat_transfer_convex.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./disp]
    type = PiecewiseLinear
    x = '0 2.0'
    y = '0 1.0'
  [../]

  [./temp]
    type = PiecewiseLinear
    x = '0     1'
    y = '200 200'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]

  [./temp]
    initial_condition = 100
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 2
    slave = 3
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./move_right]
    type = FunctionDirichletBC
    boundary = '3'
    variable = disp_x
    function = disp
  [../]
  [./fixed_x]
    type = DirichletBC
    boundary = '1'
    variable = disp_x
    value = 0
  [../]
  [./fixed_y]
    type = DirichletBC
    boundary = '1 2 3 4'
    variable = disp_y
    value = 0
  [../]
  [./fixed_z]
    type = DirichletBC
    boundary = '1 2 3 4'
    variable = disp_z
    value = 0
  [../]

  [./temp_bottom]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]
  [./temp_top]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[Materials]
  [./dummy]
    type = Elastic
    block = '1 2'

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = .3

    temp = temp
    thermal_expansion = 0
  [../]

  [./heat1]
    type = HeatConductionMaterial
    block = 1

    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]
  [./heat2]
    type = HeatConductionMaterial
    block = 2

    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./density]
    type = Density
    block = '1 2'
    density = 1.0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  dt = 0.1
  end_time = 2.0
[]

[Outputs]
  file_base = gap_heat_transfer_convex_out
  exodus = true
[]

modules/combined/test/tests/elastic_thermal_patch/elastic_thermal_patch_rz.i

#
# This problem is modified from the Abaqus verification manual:
#   "1.5.4 Patch test for axisymmetric elements"
# The original stress solution is given as:
#   xx = yy = zz = 2000
#   xy = 400
#
# Here, E=1e6 and nu=0.25.
# However, with a +100 degree change in temperature and a coefficient
#   of thermal expansion of 1e-6, the solution becomes:
#   xx = yy = zz = 1800
#   xy = 400
#   since
#   E*(1-nu)/(1+nu)/(1-2*nu)*(1+2*nu/(1-nu))*(1e-3-1e-4) = 1800
#
# Also,
#
#   dSrr   dSrz   Srr-Stt
#   ---- + ---- + ------- + br = 0
#    dr     dz       r
#
# and
#
#   dSrz   Srz   dSzz
#   ---- + --- + ---- + bz = 0
#    dr     r     dz
#
# where
#   Srr = stress in rr
#   Szz = stress in zz
#   Stt = stress in theta-theta
#   Srz = stress in rz
#   br  = body force in r direction
#   bz  = body force in z direction
#
[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
  volumetric_locking_correction = true
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_thermal_patch_rz_test.e
[]

[Functions]
  [./ur]
    type = ParsedFunction
    value = '1e-3*x'
  [../]
  [./uz]
    type = ParsedFunction
    value = '1e-3*(x+y)'
  [../]
  [./body]
    type = ParsedFunction
    value = '-400/x'
  [../]
  [./temp]
    type = ParsedFunction
    value = '117.56+100*t'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules/TensorMechanics/Master/All]
  add_variables = true
  strain = SMALL
  incremental = true
  eigenstrain_names = eigenstrain
  generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
[]

[Kernels]
  [./body]
    type = BodyForce
    variable = disp_y
    value = 1
    function = body
  [../]

  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = ur
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = uz
  [../]

  [./temp]
    type = FunctionDirichletBC
    variable = temp
    boundary = 10
    function = temp
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 400000.0
    poissons_ratio = 0.25
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-6
    stress_free_temperature = 117.56
    eigenstrain_name = eigenstrain
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]

  [./heat]
    type = HeatConductionMaterial
    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    density = 0.283
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-11
  nl_rel_tol = 1e-12

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/elastic_patch/elastic_patch_plane_strain_sm.i

#
# This problem is taken from the Abaqus verification manual:
#   "1.5.1 Membrane patch test"
# The stress solution is given as:
#   xx = yy = 1600
#   zz = 800
#   xy = 400
#   yz = zx = 0
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = elastic_patch_rz.e
[]

[Functions]
  [./ux]
    type = ParsedFunction
    value = '1e-3*(x+0.5*y)'
  [../]
  [./uy]
    type = ParsedFunction
    value = '1e-3*(y+0.5*x)'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = ux
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = uy
  [../]

  [./temp]
    type = DirichletBC
    variable = temp
    boundary = 10
    value = 117.56
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.25

    temp = temp

    formulation = planestrain
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = 1

    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    block = 1
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  file_base = elastic_patch_plane_strain_out
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer/errors/master_wrong_control.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 0
    upper_bound = 0.5
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_left uniform_right'
    execute_on = 'initial timestep_end'
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub_wrong_control.i
    sampler = sample
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
[]

modules/tensor_mechanics/test/tests/jacobian/cto15.i

# Jacobian check for nonlinear, multi-surface plasticity
# This returns to the edge of Mohr Coulomb.
# This is a very nonlinear test and a delicate test because it perturbs around
# an edge of the yield function where some derivatives are not well defined
#
# Plasticity models:
# Mohr-Coulomb with cohesion = 40MPa, friction angle = 35deg, dilation angle = 5deg
# Tensile with strength = 1MPa
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# NOTE: The yield function tolerances here are set at 100-times what i would usually use
# This is because otherwise the test fails on the 'pearcey' architecture.
# This is because identical stress tensors yield slightly different eigenvalues
# (and hence return-map residuals) on 'pearcey' than elsewhere, which results in
# a different number of NR iterations are needed to return to the yield surface.
# This is presumably because of compiler internals, or the BLAS routines being
# optimised differently or something similar.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./linesearch]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ld]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./constr_added]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int5]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int6]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int7]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int8]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./linesearch]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = linesearch
  [../]
  [./ld]
    type = MaterialRealAux
    property = plastic_linear_dependence_encountered
    variable = ld
  [../]
  [./constr_added]
    type = MaterialRealAux
    property = plastic_constraints_added
    variable = constr_added
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int0
    index = 0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int1
    index = 1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int2
    index = 2
  [../]
  [./int3]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int3
    index = 3
  [../]
  [./int4]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int4
    index = 4
  [../]
  [./int5]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int5
    index = 5
  [../]
  [./int6]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int6
    index = 6
  [../]
  [./int7]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int7
    index = 7
  [../]
  [./int8]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    variable = int8
    index = 8
  [../]
[]

[Postprocessors]
  [./max_int0]
    type = ElementExtremeValue
    variable = int0
    outputs = console
  [../]
  [./max_int1]
    type = ElementExtremeValue
    variable = int1
    outputs = console
  [../]
  [./max_int2]
    type = ElementExtremeValue
    variable = int2
    outputs = console
  [../]
  [./max_int3]
    type = ElementExtremeValue
    variable = int3
    outputs = console
  [../]
  [./max_int4]
    type = ElementExtremeValue
    variable = int4
    outputs = console
  [../]
  [./max_int5]
    type = ElementExtremeValue
    variable = int5
    outputs = console
  [../]
  [./max_int6]
    type = ElementExtremeValue
    variable = int6
    outputs = console
  [../]
  [./max_int7]
    type = ElementExtremeValue
    variable = int7
    outputs = console
  [../]
  [./max_int8]
    type = ElementExtremeValue
    variable = int8
    outputs = console
  [../]
  [./max_iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./av_linesearch]
    type = ElementAverageValue
    variable = linesearch
    outputs = 'console csv'
  [../]
  [./av_ld]
    type = ElementAverageValue
    variable = ld
    outputs = 'console csv'
  [../]
  [./av_constr_added]
    type = ElementAverageValue
    variable = constr_added
    outputs = 'console csv'
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console csv'
  [../]
[]


[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 4E1
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    yield_function_tolerance = 1.0E-4  # Note larger value
    shift = 1.0E-4                     # Note larger value
    internal_constraint_tolerance = 1.0E-7
  [../]

  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E2
  [../]
  [./tensile]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = ts
    yield_function_tolerance = 1.0E-4  # Note larger value
    shift = 1.0E-4                     # Note larger value
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1.0E3 1.3E3'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '100.1 0.1 -0.2  0.1 0.9 0  -0.2 0 1.1'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-7

    plastic_models = 'tensile mc'
    max_NR_iterations = 5
    specialIC = 'rock'
    deactivation_scheme = 'safe'
    min_stepsize = 1
    max_stepsize_for_dumb = 1
    tangent_operator = nonlinear
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]



[Outputs]
  file_base = cto14
  exodus = false
  csv = true
[]

test/tests/time_integrators/actually_explicit_euler_verification/ee-2d-linear.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = (x+y)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*(x+y)
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  start_time = 0.0
  num_steps = 20
  dt = 0.00005
  l_tol = 1e-12

  [./TimeIntegrator]
    type = ActuallyExplicitEuler
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/tensor_mechanics/test/tests/critical_time_step/crit_time_solid_variable.i

[GlobalParams]
  displacements = 'disp_x'
[]

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 50

  xmin = 0
  xmax = 5
[]

[Variables]
  [./disp_x]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
[]

[Functions]
  [./prefac]
    type = ParsedFunction
    value = '1+2*x'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.1
    youngs_modulus = 1e6
    elasticity_tensor_prefactor = prefac
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./density]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '8050.0'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-4

  l_max_its = 3

  start_time = 0.0
  dt = 0.1
  num_steps = 1
  end_time = 1.0
[]

[Postprocessors]
  [./time_step]
    type = CriticalTimeStep
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/combined/test/tests/thermo_mech/youngs_modulus_function_temp.i

# ---------------------------------------------------------------------------
# This test is designed to verify the variable elasticity tensor functionality in the
# ComputeFiniteStrainElasticStress class with the elasticity_tensor_has_changed flag
# by varying the young's modulus with temperature. A constant strain is applied
# to the mesh in this case, and the stress varies with the changing elastic constants.
#
# Geometry: A single element cube in symmetry boundary conditions and pulled
#           at a constant displacement to create a constant strain in the x-direction.
#
# Temperature:  The temperature varies from 400K to 700K in this simulation by
#           100K each time step. The temperature is held constant in the last
#           timestep to ensure that the elasticity tensor components are constant
#           under constant temperature.
#
# Results: Because Poisson's ratio is set to zero, only the stress along the x
#          axis is non-zero.  The stress changes with temperature.
#
#    Temperature(K)   strain_{xx}(m/m)     Young's Modulus(Pa)   stress_{xx}(Pa)
#          400              0.001             10.0e6               1.0e4
#          500              0.001             10.0e6               1.0e4
#          600              0.001              9.94e6              9.94e3
#          700              0.001              9.93e6              9.93e3
#
#    The tensor mechanics results align exactly with the analytical results above
#    when this test is run with ComputeIncrementalSmallStrain.  When the test is
#    run with ComputeFiniteStrain, a 0.05% discrepancy between the analytical
#    strains and the simulation strain results is observed, and this discrepancy
#    is carried over into the calculation of the elastic stress.
#-------------------------------------------------------------------------

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 400
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temperature_function]
    type = PiecewiseLinear
    x = '1       4'
    y = '400   700'
  [../]
[]

[Kernels]
  [./heat]
    type = Diffusion
    variable = temp
  [../]

  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]


[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]

 [./elastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = elastic_strain
    variable = elastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./u_left_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_back_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./u_pull_right]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.001
  [../]

  [./temp_bc_1]
    type = FunctionDirichletBC
    variable = temp
    preset = false
    boundary = '1 2 3 4'
    function = temperature_function
  [../]
[]

[Materials]
  [./youngs_modulus]
    type = PiecewiseLinearInterpolationMaterial
    xy_data = '0          10e+6
               599.9999   10e+6
               600        9.94e+6
               99900      10e3'
    property = youngs_modulus
    variable = temp
  [../]
  [./elasticity_tensor]
    type = ComputeVariableIsotropicElasticityTensor
    args = temp
    youngs_modulus = youngs_modulus
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  end_time = 5
[]

[Postprocessors]
  [./elastic_strain_xx]
    type = ElementAverageValue
    variable = elastic_strain_xx
  [../]
  [./elastic_stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]

  [./temp]
    type = AverageNodalVariableValue
    variable = temp
  [../]
[]

[Outputs]
  exodus = true
[]

modules/navier_stokes/test/tests/ins/RZ_cone/RZ_cone_by_parts.i

# This input file tests several different things:
# .) The axisymmetric (RZ) form of the governing equations.
# .) An open boundary.
# .) Integrating the pressure by parts.
# .) Natural boundary condition at the outlet.
[GlobalParams]
  gravity = '0 0 0'
[]

[Mesh]
  file = '2d_cone.msh'
[]

[Problem]
  coord_type = RZ
[]

[Preconditioning]
  [./SMP_PJFNK]
    type = SMP
    full = true
    solve_type = Newton
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.005
  dtmin = 0.005
  num_steps = 5
  l_max_its = 100

  # Note: The Steady executioner can be used for this problem, if you
  # drop the INSMomentumTimeDerivative kernels and use the following
  # direct solver options.
  # petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -ksp_type'
  # petsc_options_value = 'lu NONZERO 1.e-10 preonly'

  # Block Jacobi works well for this problem, as does "-pc_type asm
  # -pc_asm_overlap 2", but an overlap of 1 does not work for some
  # reason?
  petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_levels'
  petsc_options_value = 'bjacobi  ilu          4'

  nl_rel_tol = 1e-12
  nl_max_its = 6
[]

[Outputs]
  csv = true
  console = true
  [./out]
    type = Exodus
  [../]
[]

[Variables]
  [./vel_x]
    # Velocity in radial (r) direction
    family = LAGRANGE
    order = SECOND
  [../]
  [./vel_y]
    # Velocity in axial (z) direction
    family = LAGRANGE
    order = SECOND
  [../]
  [./p]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[BCs]
  [./u_in]
    type = DirichletBC
    boundary = bottom
    variable = vel_x
    value = 0
  [../]
  [./v_in]
    type = FunctionDirichletBC
    boundary = bottom
    variable = vel_y
    function = 'inlet_func'
  [../]
  [./u_axis_and_walls]
    type = DirichletBC
    boundary = 'left right'
    variable = vel_x
    value = 0
  [../]
  [./v_no_slip]
    type = DirichletBC
    boundary = 'right'
    variable = vel_y
    value = 0
  [../]
[]


[Kernels]
  [./x_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_x
  [../]
  [./y_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_y
  [../]
  [./mass]
    type = INSMassRZ
    variable = p
    u = vel_x
    v = vel_y
    p = p
  [../]
  [./x_momentum_space]
    type = INSMomentumLaplaceFormRZ
    variable = vel_x
    u = vel_x
    v = vel_y
    p = p
    component = 0
  [../]
  [./y_momentum_space]
    type = INSMomentumLaplaceFormRZ
    variable = vel_y
    u = vel_x
    v = vel_y
    p = p
    component = 1
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 'volume'
    prop_names = 'rho mu'
    prop_values = '1  1'
  [../]
[]

[Functions]
  [./inlet_func]
    type = ParsedFunction
    value = '-4 * x^2 + 1'
  [../]
[]

[Postprocessors]
  [./flow_in]
    type = VolumetricFlowRate
    vel_x = vel_x
    vel_y = vel_y
    boundary = 'bottom'
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
  [./flow_out]
    type = VolumetricFlowRate
    vel_x = vel_x
    vel_y = vel_y
    boundary = 'top'
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
[]

test/tests/transfers/multiapp_mesh_function_transfer/fromsub_source_displaced.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./transferred_u]
  [../]
  [./elemental_transferred_u]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    positions = '.099 .099 0 .599 .599 0 0.599 0.099 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = fromsub_sub.i
  [../]
[]

[Transfers]
  [./from_sub]
    source_variable = sub_u
    direction = from_multiapp
    variable = transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
    displaced_source_mesh = true
  [../]
  [./elemental_from_sub]
    source_variable = sub_u
    direction = from_multiapp
    variable = elemental_transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
    displaced_source_mesh = true
  [../]
[]

modules/richards/test/tests/jacobian_2/jn21.i

# two phase
# unsaturated = true

# gravity = true
# supg = true
# transient = true
# halfgaussiansink = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]

[BCs]
  [./water_flux]
    type = RichardsHalfGaussianSink
    boundary = 'left right'
    max = 2E6
    sd = 0.7
    centre = 0.9
    multiplying_fcn = 1.5
    variable = pwater
  [../]
  [./gas_flux]
    type = RichardsHalfGaussianSink
    boundary = 'top'
    max = -1.1E6
    sd = 0.4
    centre = 0.8
    multiplying_fcn = 1.1
    variable = pgas
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn08
  exodus = false
[]

test/tests/mesh/custom_partitioner/custom_linear_partitioner_restart_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2

  nx = 10
  ny = 10

  xmin = 0.0
  xmax = 1.0

  ymin = 0.0
  ymax = 10.0

  [./Partitioner]
    type = LibmeshPartitioner
    partitioner = linear
  [../]
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_from_file_var = u
    initial_from_file_timestep = 2
  [../]
[]

[Kernels]
  active = 'bodyforce ie'

  [./bodyforce]
    type = BodyForce
    variable = u
    value = 10.0
  [../]

  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 10
  dt = .1
[]

[Outputs]
  file_base =  custom_linear_partitioner_restart_test_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/1D_axisymmetric/axisymmetric_gps_incremental.i

#
# This test checks the generalized plane strain using incremental small strain formulation.
# The model consists of two sets of line elements. One undergoes a temperature rise of 100 with
# the other seeing a temperature rise of 300.  Young's modulus is 3600, and
# Poisson's ratio is 0.2.  The thermal expansion coefficient is 1e-8.  All
# nodes are constrained against movement.
#
# For plane strain case, i.e., without constraining the strain_yy to be uniform,
# the stress solution would be [-6e-3, -6e-3, -6e-3] and [-18e-3, -18e-3, -18e-3] (xx, yy, zz).
# The generalized plane strain kernels work to balance the force in y direction.
#
# With out of plane strain of 3e-6, the stress solution becomes
# [-3e-3, 6e-3, -3e-3] and [-15e-3, -6e-3, -15e-3] (xx, yy, zz).  This gives
# a domain integral of out-of-plane stress to be zero.
#

[GlobalParams]
  displacements = disp_x
  scalar_out_of_plane_strain = scalar_strain_yy
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = lines.e
[]

[Variables]
  [./disp_x]
  [../]
  [./temp]
    initial_condition = 580.0
  [../]
  [./scalar_strain_yy]
    order = FIRST
    family = SCALAR
  [../]
[]

[Functions]
  [./temp100]
    type = PiecewiseLinear
    x = '0   1'
    y = '580 680'
  [../]
  [./temp300]
    type = PiecewiseLinear
    x = '0   1'
    y = '580 880'
  [../]
[]

[Kernels]
  [./heat]
    type = Diffusion
    variable = temp
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./gps]
        planar_formulation = GENERALIZED_PLANE_STRAIN
        scalar_out_of_plane_strain = scalar_strain_yy
        strain = SMALL
        incremental = true
        generate_output = 'strain_xx strain_yy strain_zz stress_xx stress_yy stress_zz'
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    boundary = 1000
    value = 0
    variable = disp_x
  [../]
  [./temp100]
    type = FunctionDirichletBC
    variable = temp
    function = temp100
    boundary = 2
  [../]
  [./temp300]
    type = FunctionDirichletBC
    variable = temp
    function = temp300
    boundary = 3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 3600
    poissons_ratio = 0.2
  [../]

  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-8
    temperature = temp
    stress_free_temperature = 580
    eigenstrain_name = eigenstrain
  [../]

  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_max_its = 50
  l_tol = 1e-6
  nl_max_its = 15
  nl_abs_tol = 1e-10
  start_time = 0
  end_time = 1
  num_steps = 1
[]

[Outputs]
  exodus = true
  console = true
[]

modules/combined/test/tests/elastic_patch/elastic_patch_plane_strain.i

#
# This problem is taken from the Abaqus verification manual:
#   "1.5.1 Membrane patch test"
# The stress solution is given as:
#   xx = yy = 1600
#   zz = 800
#   xy = 400
#   yz = zx = 0
#
# Since the strain is 1e-3 in both directions, the new density should be
#   new_density = original_density * V_0 / V
#   new_density = 0.283 / (1 + 1e-3 + 1e-3) = 0.282435

[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
[]

[Mesh]
  file = elastic_patch_rz.e
[]

[Variables]
  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules/TensorMechanics/Master/All]
  strain = SMALL
  incremental = true
  planar_formulation = PLANE_STRAIN
  add_variables = true
  generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
[]

[Kernels]
  [./heat]
    type = TimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = '1e-3*(x+0.5*y)'
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = '1e-3*(y+0.5*x)'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
  [../]

  [./density]
    type = Density
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/phase_field_kernels/AllenCahnVariableL.i

#
# Test the parsed function free enery Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 12
  ymax = 12
  elem_type = QUAD4
[]

[AuxVariables]
  [./chi]
    [./InitialCondition]
      type = FunctionIC
      function = 'x/24+0.5'
    [../]
  [../]
[]

[Variables]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0.0
      y1 = 0.0
      radius = 6.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 3.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]

  [./ACBulk]
    type = AllenCahn
    variable = eta
    f_name = F
  [../]

  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = 1
    variable_L = true
    args = chi
  [../]
[]

[Materials]
  [./L]
    type = DerivativeParsedMaterial
    f_name = L
    args = 'eta chi'
    function = '0.1 * eta^2 + chi^2'
    derivative_order = 2
  [../]

  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta'
    function = '2 * eta^2 * (1-eta)^2 - 0.2*eta'
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'NEWTON'
  num_steps = 2
  dt = 1
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/examples/flow_through_fractured_media/coarse.i

# Flow and solute transport along a fracture embedded in a porous matrix
# The fracture is represented by lower dimensional elements
# fracture aperture = 6e-4m
# fracture porosity = 6e-4m = phi * a
# fracture permeability = 1.8e-11 which is based on k=3e-8 from a**2/12, and k*a = 3e-8*6e-4
# matrix porosity = 0.1
# matrix permeanility = 1e-20

[Mesh]
  type = FileMesh
  file = 'coarse.e'
  block_id = '1 2 3'
  block_name = 'fracture matrix1 matrix2'

  boundary_id = '1 2'
  boundary_name = 'bottom top'
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pp]
  [../]
  [./massfrac0]
  [../]
[]

[AuxVariables]
  [./velocity_x]
    family = MONOMIAL
    order = CONSTANT
    block = 'fracture'
  [../]
  [./velocity_y]
    family = MONOMIAL
    order = CONSTANT
    block = 'fracture'
  [../]
[]

[AuxKernels]
  [./velocity_x]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = velocity_x
    component = x
    aperture = 6E-4
  [../]
  [./velocity_y]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = velocity_y
    component = y
    aperture = 6E-4
  [../]
[]

[ICs]
  [./massfrac0]
    type = ConstantIC
    variable = massfrac0
    value = 0
  [../]
  [./pp_matrix]
    type = ConstantIC
    variable = pp
    value = 1E6
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    value = 0
    variable = massfrac0
    boundary = top
  [../]
  [./bottom]
    type = DirichletBC
    value = 1
    variable = massfrac0
    boundary = bottom
  [../]
  [./ptop]
    type = DirichletBC
    variable = pp
    boundary =  top
    value = 1e6
  [../]
  [./pbottom]
    type = DirichletBC
    variable = pp
    boundary = bottom
    value = 1.002e6
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = pp
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = pp
  [../]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = pp
    disp_trans = 0
    disp_long = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = massfrac0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = massfrac0
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = massfrac0
    disp_trans = 0
    disp_long = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp massfrac0'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pp
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = massfrac0
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./poro_fracture]
    type = PorousFlowPorosityConst
    porosity = 6e-4   # = a * phif
    block = 'fracture'
  [../]
  [./poro_matrix]
    type = PorousFlowPorosityConst
    porosity = 0.1
    block = 'matrix1 matrix2'
  [../]
  [./diff1]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1e-9 1e-9'
    tortuosity = 1.0
    block = 'fracture'
  [../]
  [./diff2]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '1e-9 1e-9'
    tortuosity = 0.1
    block = 'matrix1 matrix2'
  [../]
  [./permeability_fracture]
    type = PorousFlowPermeabilityConst
    permeability = '1.8e-11 0 0 0 1.8e-11 0 0 0 1.8e-11'   # 1.8e-11 = a * kf
    block = 'fracture'
  [../]
  [./permeability_matrix]
    type = PorousFlowPermeabilityConst
    permeability = '1e-20 0 0 0 1e-20 0 0 0 1e-20'
    block = 'matrix1 matrix2'
  [../]
  [./relp]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 10
  dt = 1

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-12

[]

[VectorPostprocessors]
  [./xmass]
    type = LineValueSampler
    start_point = '-0.5 0 0'
    end_point = '0.5 0 0'
    sort_by = x
    num_points = 41
    variable = massfrac0
    outputs = csv
  [../]
[]

[Outputs]
  [./csv]
    type = CSV
    execute_on = 'final'
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update4.i

# MC update version, with only Tensile with tensile strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 -1 0.5  1 1.9 0  0.5 0 3'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/functional_expansion_tools/test/tests/standard_use/volume_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./empty]
  [../]
[]

[AuxVariables]
  [./s]
    order = FIRST
    family = LAGRANGE
  [../]
  [./m_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./null_kernel]
    type = NullKernel
    variable = empty
  [../]
[]

[AuxKernels]
  [./reconstruct_m_in]
    type = FunctionSeriesToAux
    function = FX_Basis_Value_Sub
    variable = m_in
  [../]
  [./calculate_s]
    type = ParsedAux
    variable = s
    args = m_in
    function = '2*exp(-m_in/0.8)'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Sub
    variable = s
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

test/tests/multiapps/move_and_reset/multilevel_sub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/exception/nonad.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_update_strategy = iteration
  [./gen]
    type = FileMeshGenerator
    file = mesh.e
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./temp]
    initial_condition = 501
  [../]
[]

[AuxVariables]
  [./density_aux]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Modules/TensorMechanics/Master]
  [./finite]
    strain = FINITE
  [../]
[]

[Kernels]
  [./gravity]
    type = Gravity
    variable = disp_y
    value = -9.81
  [../]
  [./heat]
    type = MatDiffusion
    variable = temp
    diffusivity = 1
  [../]
  [./heat_ie]
    type = TimeDerivative
    variable = temp
  [../]
[]

[AuxKernels]
  [./conductance]
    type = MaterialRealAux
    property = density
    variable = density_aux
    boundary = inner_surface
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = outer_interior
    slave = inner_surface
    quadrature = true
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'centerline'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'centerline outer_exterior'
    value = 0.0
  [../]
  [./temp]
    type = FunctionDirichletBC
    boundary = outer_exterior
    variable = temp
    function = '500 + t'
  [../]
[]

[Materials]
  [./density]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '1'
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e11
    poissons_ratio = 0.3
  [../]

  [./inner_elastic_stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'inner_creep'
    block = inner
    outputs = all
  [../]

  [./inner_creep]
    type = PowerLawCreepExceptionTest
    coefficient = 10e-22
    n_exponent = 2
    activation_energy = 0
    block = inner
  [../]

  [./outer_stressstress]
    type = ComputeFiniteStrainElasticStress
    block = outer
  [../]
[]

[Executioner]
  type = Transient
  petsc_options = ' -snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
  line_search = none

  nl_abs_tol = 1e-7
  l_max_its = 20

  num_steps = 1
  dt = 1
  dtmin = .1
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/recover/pffltvd.i

# Tests that PorousFlow can successfully recover using a checkpoint file.
# This test contains stateful material properties, adaptivity, integrated
# boundary conditions with nodal-sized materials, and TVD flux limiting.
#
# This test file is run three times:
# 1) The full input file is run to completion
# 2) The input file is run for half the time and checkpointing is included
# 3) The input file is run in recovery using the checkpoint data
#
# The final output of test 3 is compared to the final output of test 1 to verify
# that recovery was successful.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[Adaptivity]
  initial_steps = 1
  initial_marker = tracer_marker
  marker = tracer_marker
  max_h_level = 1
  [./Markers]
    [./tracer_marker]
      type = ValueRangeMarker
      variable = tracer
      lower_bound = 0.02
      upper_bound = 0.98
    [../]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '2 - x'
  [../]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = tracer
  [../]
  [./flux0]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = advective_flux_calculator_0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = porepressure
  [../]
  [./flux1]
    type = PorousFlowFluxLimitedTVDAdvection
    variable = porepressure
    advective_flux_calculator = advective_flux_calculator_1
  [../]
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 2
    boundary = left
  [../]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_component_1]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 1
    use_mobility = true
    flux_function = 1E3
  [../]
  [./remove_component_0]
    type = PorousFlowPiecewiseLinearSink
    variable = tracer
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 0
    use_mobility = true
    flux_function = 1E3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      thermal_expansion = 0
      viscosity = 1.0
      density0 = 1000.0
    [../]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure tracer'
    number_fluid_phases = 1
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
  [./advective_flux_calculator_0]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 0
  [../]
  [./advective_flux_calculator_1]
    type = PorousFlowAdvectiveFluxCalculatorSaturatedMultiComponent
    flux_limiter_type = superbee
    fluid_component = 1
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = tracer
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = the_simple_fluid
    phase = 0
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-2 0 0   0 1E-2 0   0 0 1E-2'
  [../]
[]

[Preconditioning]
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = NodalValueSampler
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 0.2
  dt = 0.05
[]

[Outputs]
  csv = true
[]

modules/richards/test/tests/theis/th_lumped_02.i

# fully-saturated
# production
# lumped
[Mesh]
  type = FileMesh
  file = th02_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  sat_UO = Saturation
  seff_UO = Seff1VG
  SUPG_UO = SUPGstandard
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1 2 4 20'
    x = '0 1 10 100'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]

  [./total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsLumpedMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsPolyLineSink
    pressures = '-1E9 1E9'
    fluxes = '200 200'
    point_file = th01.points
    SumQuantityUO = total_outflow_mass
    variable = pressure
  [../]
[]


[Postprocessors]
  [./flow_report]
    type = RichardsPlotQuantity
    uo = total_outflow_mass
  [../]
  [./p50]
    type = PointValue
    variable = pressure
    point = '50 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E5
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-6 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 100
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  file_base = th_lumped_02
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian/cwp09.i

# Capped weak-plane plasticity
# checking jacobian for tensile failure with hardening
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 100
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 1.0
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.1
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 2
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 2  0 0 -1  2 -1 1.5'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 0
    smoothing_tol = 2
    yield_function_tol = 1E-10
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/porous_flow/test/tests/numerical_diffusion/fltvd_none.i

# Using Flux-Limited TVD Advection ala Kuzmin and Turek
# No antidiffusion, so this is identical to full-upwinding
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[Variables]
  [./tracer]
  [../]
[]

[ICs]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass_dot]
    type = MassLumpedTimeDerivative
    variable = tracer
  [../]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculator
    flux_limiter_type = none
    u = tracer
    velocity = '0.1 0 0'
  [../]
[]

[BCs]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_tracer]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = right
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 101
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-1
  nl_abs_tol = 1E-8
  nl_max_its = 500
  timestep_tolerance = 1E-3
[]

[Outputs]
  csv = true
  execute_on = final
[]

modules/tensor_mechanics/test/tests/ad_elastic/rz_incremental_small_elastic.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_r]
    scaling = 1e-10
  [../]
  [./disp_z]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_r]
    type = ADStressDivergenceRZTensors
    component = 0
    variable = disp_r
  [../]
  [./stress_z]
    type = ADStressDivergenceRZTensors
    component = 1
    variable = disp_z
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0
  [../]
  [./axial]
    type = DirichletBC
    variable = disp_r
    boundary = left
    value = 0
  [../]
  [./rdisp]
    type = DirichletBC
    variable = disp_r
    boundary = right
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
[]

[Materials]
  [./strain]
    type = ADComputeAxisymmetricRZIncrementalStrain
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/contact/test/tests/bouncing-block-contact/grid-sequencing/grid-sequencing.i

starting_point = 2e-1

# We offset slightly so we avoid the case where the bottom of the slave block and the top of the
# master block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarsest mesh (basic line search handles that fine)
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
[]

[Mesh]
  file = level0.e
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
  [./normal_lm]
    block = 3
  [../]
  [./tangential_lm]
    block = 3
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [normal_lm]
    type = NormalNodalLMMechanicalContact
    slave = 10
    master = 20
    variable = normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = min
  [../]
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [tangential_lm]
    type = TangentialMortarLMMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = tangential_lm
    slave_variable = disp_x
    slave_disp_y = disp_y
    use_displaced_mesh = true
    compute_primal_residuals = false
    contact_pressure = normal_lm
    friction_coefficient = .1
    ncp_function_type = fb
  []
  [tangential_x]
    type = TangentialMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = tangential_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [tangential_y]
    type = TangentialMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = tangential_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  num_steps = 3
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -snes_linesearch_monitor'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
  nl_abs_tol = 1e-10
  num_grids = 5
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  [exo]
    type = Exodus
    sync_times = '15'
    sync_only = true
  []
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '3'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/tensor_mechanics/test/tests/recompute_radial_return/isotropic_plasticity_incremental_strain.i

# This simulation uses the piece-wise linear strain hardening model
# with the incremental small strain formulation; incremental small strain
# is required to produce the strain_increment for the DiscreteRadialReturnStressIncrement
# class, which handles the calculation of the stress increment to return
# to the yield surface in a J2 (isotropic) plasticity problem.
#
#  This test assumes a Poissons ratio of zero and applies a displacement loading
# condition on the top in the y direction while fixing the displacement in the x
# and z directions; thus, only the normal stress and the normal strains in the
# y direction are compared in this problem.
#
# A similar problem was run in Abaqus on a similar 1 element mesh and was used
# to verify the SolidMechanics solution; this TensorMechanics code matches the
# SolidMechanics solution.
#
# Mechanical strain is the sum of the elastic and plastic strains but is different
# from total strain in cases with eigen strains, e.g. thermal strain.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t*(0.01)
  [../]
  [./hf]
    type = PiecewiseLinear
    x = '0  0.00004 0.0001  0.1'
    y = '50   54    56       60'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    incremental = true
    add_variables = true
    generate_output = 'stress_yy plastic_strain_xx plastic_strain_yy plastic_strain_zz'
  [../]
[]

[BCs]
  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = top_pull
  [../]

  [./x_sides]
    type = DirichletBC
    variable = disp_x
    boundary = 'left right'
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_sides]
    type = DirichletBC
    variable = disp_z
    boundary = 'back front'
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.5e5
    poissons_ratio = 0.0
  [../]
  [./isotropic_plasticity]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 25.
    hardening_constant = 1000.0
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    tangent_operator = elastic
    inelastic_models = 'isotropic_plasticity'
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-9

  start_time = 0.0
  end_time = 0.01875
  dt = 0.00125
  dtmin = 0.0001
[]

[Outputs]
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

modules/porous_flow/test/tests/poroperm/except2.i

# Exception test: fluid=true but no solid_bulk is provided
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  PorousFlowDictator = dictator
  displacements = 'disp_x disp_y disp_z'
  biot_coefficient = 0.7
[]

[Variables]
  [./porepressure]
    initial_condition = 2
  [../]
  [./temperature]
    initial_condition = 4
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[ICs]
  [./disp_x]
    type = FunctionIC
    function = '0.5 * x'
    variable = disp_x
  [../]
[]

[Kernels]
  [./dummy_p]
    type = TimeDerivative
    variable = porepressure
  [../]
  [./dummy_t]
    type = TimeDerivative
    variable = temperature
  [../]
  [./dummy_x]
    type = TimeDerivative
    variable = disp_x
  [../]
  [./dummy_y]
    type = TimeDerivative
    variable = disp_y
  [../]
  [./dummy_z]
    type = TimeDerivative
    variable = disp_z
  [../]
[]

[AuxVariables]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[Postprocessors]
  [./porosity]
    type = PointValue
    variable = porosity
    point = '0 0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure temperature'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./porosity]
    type = PorousFlowPorosity
    mechanical = true
    fluid = true
    thermal = true
    ensure_positive = false
    porosity_zero = 0.5
    thermal_expansion_coeff = 0.5
    reference_porepressure = 3
    reference_temperature = 3.5
  [../]
[]

[Executioner]
  solve_type = Newton
  type = Transient
  num_steps = 1
[]

[Outputs]
  csv = true
[]

modules/solid_mechanics/test/tests/material_limit_time_step/creep/nafems_test5a_lim_no_comb.i

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  temp = temp
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = plane1_mesh.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./temp]
    initial_condition = 1500.0
  [../]
  [./creep]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./pressure]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./invariant3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./creep_aux]
    type = MaterialRealAux
    property = effective_creep_strain
    variable = creep
  [../]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
  [../]
  [./pressure]
    type = MaterialTensorAux
    tensor = stress
    variable = pressure
    quantity = hydrostatic
  [../]
  [./invariant3]
    type = MaterialTensorAux
    tensor = stress
    variable = invariant3
    quantity = thirdInvariant
  [../]
  [./creep_strain_xx]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_xx
    index = 0
  [../]
  [./creep_strain_yy]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_yy
    index = 1
  [../]
  [./creep_strain_zz]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_zz
    index = 2
  [../]
  [./creep_strain_xy]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_xy
    index = 3
  [../]
  [./elastic_str_xx_aux]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_xx
    index = 0
  [../]
  [./elastic_str_yy_aux]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]
  [./elastic_str_zz_aux]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_zz
    index = 2
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 3
    component = 1
    factor = -100.0
  [../]
  [./side_press]
    type = Pressure
    variable = disp_x
    boundary = 4
    component = 0
    factor = -200.0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = SolidModel
    block = 1
    youngs_modulus = 200e3
    poissons_ratio = 0.3
    constitutive_model = creep_matl
    formulation = NonlinearPlaneStrain
    large_strain = true
  [../]
  [./creep_matl]
    type = PowerLawCreepModel
    block = 1
    coefficient = 3.125e-14
    n_exponent = 5
    activation_energy = 0
    max_inelastic_increment = 0.01
    compute_material_timestep_limit = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_rel_tol = 1e-5
  nl_abs_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  end_time = 1000.0
  num_steps = 10000
  l_tol = 1e-3

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1e-6
    time_t = '1e-6  2e-6 3e-6 5e-6 9e-6 1.7e-5 3.3e-5 6.5e-5 1.29e-4 2.57e-4 5.13e-4 1.025e-3 2.049e-3 4.097e-3 8.193e-3 1.638e-2 3.276e-2 5.734e-2 0.106 0.180 0.291 0.457 0.706 1.08 1.64 2.48 3.74 5.63 8.46 12.7 19.1 28.7 43.0 64.5 108.0 194.0 366.0 710.0 1000.0'
    time_dt = '1e-6 1e-6 2e-6 4e-6 8e-6 1.6e-5 3.2e-5 6.4e-5 1.28e-4 2.56e-4 5.12e-4 1.024e-3 2.048e-3 4.096e-3 8.192e-3 1.6384e-2 2.458e-2 4.915e-2 7.40e-2 0.111 0.166 0.249 0.374 0.560 0.840 1.26 1.89 2.83 4.25 6.40 9.6 14.3 21.5 43.0 86.1 172.0 344.0 290.0 290.0'
    optimal_iterations = 30
    iteration_window = 9
    growth_factor = 2.0
    cutback_factor = 0.5
    timestep_limiting_postprocessor = matl_ts_min
  [../]

[]

[Postprocessors]
  [./matl_ts_min]
    type = MaterialTimeStepPostprocessor
  [../]
  [./sigma_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./pressure]
    type = ElementAverageValue
    variable = pressure
  [../]
  [./invariant3]
    type = ElementAverageValue
    variable = invariant3
  [../]
  [./eps_crp_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
  [../]
  [./eps_crp_yy]
    type = ElementAverageValue
    variable = creep_strain_yy
  [../]
  [./eps_crp_zz]
    type = ElementAverageValue
    variable = creep_strain_zz
  [../]
  [./eps_crp_mag]
    type = ElementAverageValue
    variable = creep
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x3]
    type = NodalVariableValue
    nodeid = 2
    variable = disp_x
  [../]
  [./disp_y3]
    type = NodalVariableValue
    nodeid = 2
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./elas_str_xx]
    type = ElementAverageValue
    variable = elastic_strain_xx
  [../]
  [./elas_str_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./elas_str_zz]
    type = ElementAverageValue
    variable = elastic_strain_zz
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  csv = true
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 25
  [../]
[]

test/tests/restart/restart_transient_from_steady/restart_trans_with_sub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Problem]
  restart_file_base = steady_with_sub_out_sub0_cp/LATEST
  skip_additional_restart_data = true
[]

[AuxVariables]
  [./power_density]
  [../]
[]

[Variables]
  [./temp]
#    initial_condition = 1000000
  [../]
[]

[Kernels]
  [./heat_conduction]
     type = Diffusion
     variable = temp
  [../]
  [./heat_ie]
    type = TimeDerivative
    variable = temp
  [../]
  [./heat_source_fuel]
    type = CoupledForce
    variable = temp
    v = power_density
  [../]
[]

[BCs]
  [bc]
    type = DirichletBC
    variable = temp
    boundary = '0 1 2 3'
    value = 450
  []
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart '
  petsc_options_value = 'hypre boomeramg 100'

  start_time = 0
  end_time = 10
  dt = 1.0
  # steady_state_detection = true

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-7
[]

[Postprocessors]
  [./temp_fuel_avg]
    type = ElementAverageValue
    variable = temp
    block = '0'
    execute_on = 'initial timestep_end'
  [../]
  [./pwr_density]
    type = ElementIntegralVariablePostprocessor
    block = '0'
    variable = power_density
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  perf_graph = true
  exodus = true
  color = true
  csv = true
[]

modules/combined/test/tests/solid_mechanics/pressure/pressure_rspherical.i

#
# Prescribed pressure of 1e4 leads to xx, yy, and zz stress of 1e4.
#

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x'
[]

[Problem]
  coord_type = RSPHERICAL
[]

[Mesh]#Comment
  file = pressure_rspherical.e
  construct_side_list_from_node_list = true
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e4
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = SMALL
    additional_generate_output = 'stress_xx stress_yy stress_zz'
  []
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1'
    value = 0.0
  [../]
  [./Pressure]
    [./Pressure1]
      boundary = 2
      function = pressure
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = ComputeIsotropicElasticityTensor
    block = '1 2 3'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./constant_stress]
    type = ComputeLinearElasticStress
    block = '1 2 3'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  nl_abs_tol = 1e-10
  l_max_its = 20
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/j2_plasticity_vs_LSH/j2_hard1_mod_optimised.i

# Test designed to compare results and active time between SH/LinearStrainHardening
# material vs TM j2 plastic user object. As number of elements increases, TM
# active time increases at a much higher rate than SM. Testing at 4x4x4
# (64 elements).
#
# plot vm_stress vs intnl to see constant hardening
#
# Original test located at:
# tensor_mechanics/tests/j2_plasticity/hard1.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 4
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vm_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eq_pl_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./intnl]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = intnl
  [../]
  [./eq_pl_strain]
    type = RankTwoScalarAux
    rank_two_tensor = plastic_strain
    scalar_type = EffectiveStrain
    variable = eq_pl_strain
  [../]
  [./vm_stress]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = VonMisesStress
    variable = vm_stress
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 't/60'
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 2.4e2
  [../]
  [./j2]
    type = TensorMechanicsPlasticJ2
    yield_strength = str
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    #with E = 2.1e5 and nu = 0.3
    #Hooke's law: E-nu to Lambda-G
    C_ijkl = '121154 80769.2'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = j2
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]


[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = NEWTON

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  #line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-10
  l_tol = 1e-4
  start_time = 0.0
  end_time = 0.5
  dt = 0.5
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./intnl]
    type = ElementAverageValue
    variable = intnl
  [../]
  [./eq_pl_strain]
    type = PointValue
    point = '0 0 0'
    variable = eq_pl_strain
  [../]
  [./vm_stress]
    type = PointValue
    point = '0 0 0'
    variable = vm_stress
  [../]
[]

[Outputs]
  csv = true
  print_linear_residuals = false
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/static_deformations/beam_cosserat_01_slippery.i

# Beam bending.  One end is clamped and the other end is subjected to
# a constant surface traction.
# The beam thickness is 1, and the Cosserat layer thickness is 0.5,
# so the beam contains 2 Cosserat layers.
# The joint normal stiffness is set very large and the shear stiffness very small
# so that the situation should be very close to a single beam of thickness
# 0.5.
# The deflection should be described by
# u_z = 2sx/G + 2s(1-nu^2)x^2(3L-x)/(Eh^2)
# wc_y = sx(x-2L)/(2B)
# Here
# s = applied shear stress = -2E-4
# x = coordinate along bar (0<=x<=10)
# G = shear modulus = E/2/(1+nu) = 0.4615
# nu = Poisson = 0.3
# L = length of bar = 10
# E = Young = 1.2
# h = Cosserat layer thickness = 0.5
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 80
  xmax = 10
  ny = 1
  nz = 1
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  # zmin is called back
  # zmax is called front
  # ymin is called bottom
  # ymax is called top
  # xmin is called left
  # xmax is called right
  [./no_dispy]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom top'
    value = 0.0
  [../]
  [./no_wc_y]
    type = DirichletBC
    variable = wc_y
    boundary = 'left'
    value = 0.0
  [../]
  [./clamp_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./clamp_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./end_traction]
    type = VectorNeumannBC
    variable = disp_z
    vector_value = '-2E-4 0 0'
    boundary = right
  [../]
[]

[AuxVariables]
  [./wc_x]
  [../]
  [./wc_z]
  [../]
  [./strain_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xy
    index_i = 0
    index_j = 1
  [../]
  [./strain_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xz
    index_i = 0
    index_j = 2
  [../]
  [./strain_yx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yx
    index_i = 1
    index_j = 0
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yz
    index_i = 1
    index_j = 2
  [../]
  [./strain_zx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zx
    index_i = 2
    index_j = 0
  [../]
  [./strain_zy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zy
    index_i = 2
    index_j = 1
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[VectorPostprocessors]
  [./soln]
    type = LineValueSampler
    sort_by = x
    variable = 'disp_x disp_z stress_xx stress_xz stress_zx stress_zz wc_y couple_stress_xx couple_stress_xz couple_stress_zx couple_stress_zz'
    start_point = '0 0 0'
    end_point = '10 0 0'
    num_points = 11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1.2
    poisson = 0.3
    layer_thickness = 0.5
    joint_normal_stiffness = 1E16
    joint_shear_stiffness = 1E-6
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol -sub_pc_factor_shift_type'
    petsc_options_value = 'gmres asm lu 1E-10 1E-14 10 1E-15 1E-10 NONZERO'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = beam_cosserat_01_slippery
  csv = true
  exodus = true
[]

test/tests/markers/two_circle_marker/two_circle_marker_coarsen.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.02
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = u
      auto_direction = 'x y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 6
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  initial_steps = 1
  initial_marker = two_circle_marker
  cycles_per_step = 1
  marker = two_circle_marker
  max_h_level = 1
  [./Markers]
    [./two_circle_marker]
      type = TwoCircleMarker
      point1 = '0.5 0.5 0'
      radius1 = 0.3
      point2 = '0.35 0.25 0'
      radius2 = 0.3
      shut_off_time = 0.15
      inside = refine
      outside = coarsen
    [../]
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    print_mesh_changed_info = true
  [../]
[]

modules/xfem/test/tests/corner_nodes_cut/sm/notch.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '-0.26 0.0 0.0 0.1'
    time_start_cut = 0.0
    time_end_cut = 0.0
  [../]
[]

[Mesh]
  file = notch.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[BCs]
  [./top_x]
    type = DirichletBC
    boundary = 102
    variable = disp_x
    value = 0.0
  [../]
  [./top_y]
    type = DirichletBC
    boundary = 102
    variable = disp_y
    value = 0.1
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 101
    variable = disp_y
    value = -0.1
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 101
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-9

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/internal_volume/rz_quad8_sm.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a space considering
#   an embedded volume inside.
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total volume
#   is 7.
#

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = meshes/rz_quad8.e
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e4
  [../]
[]

[Variables]
  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]

  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2'
    value = 0.0
  [../]

  [./Pressure]
    [./the_pressure]
      boundary = 3
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
    [../]
  [../]
[]

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    block = 2

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 2
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

test/tests/transfers/multiapp_copy_transfer/array_variable_transfer/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  # Array variable with two components
  [v]
    order = FIRST
    family = LAGRANGE
    components = 2
  []
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = sub.i
    execute_on = initial
  [../]
[]

[Transfers]
  # Transfers all components together on the same mesh.
  [./from_sub]
    type = MultiAppCopyTransfer
    direction = from_multiapp
    source_variable = u
    variable = v
    multi_app = sub
  [../]
[]

[Outputs]
  exodus = true
[]

modules/contact/test/tests/bouncing-block-contact/frictional-nodal-min-lm-mortar-disp.i

starting_point = 2e-1
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
  scaling = 1e0
[]

[Mesh]
  file = long-bottom-block-1elem-blocks.e
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
  [./normal_lm]
    block = 3
  [../]
  [./tangential_lm]
    block = 3
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [normal_lm]
    type = NormalNodalLMMechanicalContact
    master = 20
    slave = 10
    variable = normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = min
  []
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [tangential_lm]
    type = TangentialNodalLMMechanicalContact
    master = 20
    slave = 10
    variable = tangential_lm
    master_variable = disp_x
    disp_y = disp_y
    contact_pressure = normal_lm
    ncp_function_type = min
    mu = .1
  []
  [tangential_x]
    type = TangentialMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = tangential_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [tangential_y]
    type = TangentialMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = tangential_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  [exodus]
    type = Exodus
    sync_times = '0 5 10 15 20 25 30 35 40 45 50'
    file_base = frictional-nodal-min-lm-mortar-disp_out
  []
  [dof]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '3'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/phase_field/examples/ebsd_reconstruction/IN100-111grn.i

[Mesh]
  type = EBSDMesh
  filename = IN100_120x120.txt
  uniform_refine = 2
[]

[GlobalParams]
  op_num = 8
  var_name_base = gr
[]

[UserObjects]
  [./ebsd_reader]
    type = EBSDReader
  [../]
  [./ebsd]
    type = PolycrystalEBSD
    coloring_algorithm = bt
    ebsd_reader = ebsd_reader
    enable_var_coloring = true
  [../]
  [./grain_tracker]
    type = GrainTracker
    flood_entity_type = ELEMENTAL
    compute_halo_maps = true # For displaying HALO fields
    polycrystal_ic_uo = ebsd
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = ebsd
    [../]
  [../]
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  [./unique_grains_ic]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./unique_grains]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ghost_elements]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./halos]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices_ic]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./var_indices]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ebsd_grains]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
  [./ghost_elements]
    type = FeatureFloodCountAux
    variable = ghost_elements
    field_display = GHOSTED_ENTITIES
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
  [../]
  [./halos]
    type = FeatureFloodCountAux
    variable = halos
    field_display = HALOS
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
  [../]
  [./var_indices_ic]
    type = FeatureFloodCountAux
    variable = var_indices_ic
    execute_on = 'initial'
    flood_counter = ebsd
    field_display = VARIABLE_COLORING
  [../]
  [./unique_grains_ic]
    type = FeatureFloodCountAux
    variable = unique_grains_ic
    execute_on = 'initial'
    flood_counter = ebsd
    field_display = UNIQUE_REGION
  [../]
  [./var_indices]
    type = FeatureFloodCountAux
    variable = var_indices
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
    field_display = VARIABLE_COLORING
  [../]
  [./unique_grains]
    type = FeatureFloodCountAux
    variable = unique_grains
    execute_on = 'initial timestep_end'
    flood_counter = grain_tracker
    field_display = UNIQUE_REGION
  [../]
  [./grain_aux]
    type = EBSDReaderPointDataAux
    variable = ebsd_grains
    ebsd_reader = ebsd_reader
    data_name = 'feature_id'
    execute_on = 'initial timestep_end'
  [../]
[]

[Modules]
  [./PhaseField]
    [./EulerAngles2RGB]
      crystal_structure = cubic
      euler_angle_provider = ebsd_reader
      grain_tracker = grain_tracker
    [../]
  [../]
[]

[Materials]
  [./Copper]
    # T = 500 # K
    type = GBEvolution
    T = 500
    wGB = 0.6               # um
    GBmob0 = 2.5e-6         # m^4/(Js) from Schoenfelder 1997
    Q = 0.23                # Migration energy in eV
    GBenergy = 0.708        # GB energy in J/m^2
    molar_volume = 7.11e-6  # Molar volume in m^3/mol
    length_scale = 1.0e-6
    time_scale = 1.0e-6
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
  [./n_elements]
    type = NumElems
    execute_on = 'initial timestep_end'
  [../]
  [./n_nodes]
    type = NumNodes
    execute_on = 'initial timestep_end'
  [../]
  [./DOFs]
    type = NumDOFs
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -pc_hypre_type -pc_hypre_boomeramg_strong_threshold'
  petsc_options_value = 'hypre    boomeramg      0.7'

  l_tol = 1.0e-4
  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1.0e-8

  start_time = 0.0
  num_steps = 30

  [./TimeStepper]
    type = IterationAdaptiveDT
    cutback_factor = 0.9
    dt = 10.0
    growth_factor = 1.1
    optimal_iterations = 7
  [../]

  [./Adaptivity]
    initial_adaptivity = 2
    refine_fraction = 0.7
    coarsen_fraction = 0.1
    max_h_level = 2
  [../]
[]

[Outputs]
  exodus = true
  checkpoint = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/multi/four_surface24.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 2 and strength = 3.1
# SimpleTester3 with a = 2 and b = 1 and strength = 3.1
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 2.1E-6m in y direction and 3E-6 in z direction.
# trial stress_yy = 2.1 and stress_zz = 3.0
#
# This is similar to four_surface14.i, and a description is found there.
# The result should be stress_zz=1=stress_yy, with internal0=2
# and internal1=1.1

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2.1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '3.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int3]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./f3]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 3
    variable = f3
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
  [./int3]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 3
    variable = int3
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./f3]
    type = PointValue
    point = '0 0 0'
    variable = f3
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
  [./int3]
    type = PointValue
    point = '0 0 0'
    variable = int3
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 2
    strength = 3.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple3]
    type = TensorMechanicsPlasticSimpleTester
    a = 2
    b = 1
    strength = 3.1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2 simple3'
    deactivation_scheme = 'optimized_to_safe'
    max_NR_iterations = 4
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1'
    debug_jac_at_intnl = '1 1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = four_surface24
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/adaptive_timestepping/adapt_tstep_function_change_restart2_sm.i

# This is a test designed to evaluate the cabability of the
# IterationAdaptiveDT TimeStepper to adjust time step size according to
# a function.  For example, if the power input function for a BISON
# simulation rapidly increases or decreases, the IterationAdaptiveDT
# TimeStepper should take time steps small enough to capture the
# oscillation.

[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  order = FIRST
  family = LAGRANGE
  block = 1
[]

[Mesh]
  file = 1hex8_10mm_cube.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./Fiss_Function]
    type = PiecewiseLinear
    x = '0 1e6  2e6  2.001e6 2.002e6'
    y = '0 3e8  3e8  12e8    0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]

  [./disp_y]
  [../]

  [./disp_z]
  [../]

  [./temp]
  [../]
[]

[AuxVariables]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]

  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]

  [./heat_source]
     type = HeatSource
     variable = temp
     value = 1.0
     function = Fiss_Function
  [../]
[]

[AuxKernels]
  [./vonmises_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./bottom_temp]
    type = DirichletBC
    variable = temp
    boundary = 1
    value = 300
  [../]
  [./top_bottom_disp_x]
    type = DirichletBC
    variable = disp_x
    boundary = '1'
    value = 0
  [../]
  [./top_bottom_disp_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1'
    value = 0
  [../]
  [./top_bottom_disp_z]
    type = DirichletBC
    variable = disp_z
    boundary = '1'
    value = 0
  [../]
[]

[Materials]
 [./thermal]
    type = HeatConductionMaterial
    temp = temp
    specific_heat = 1.0
    thermal_conductivity = 1.0
  [../]

  [./elastic]
    type = Elastic
    youngs_modulus = 300e6
    poissons_ratio = .3
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    thermal_expansion = 5e-6
    stress_free_temperature = 300.0
    formulation = Nonlinear3D
    increment_calculation = Eigen
  [../]

  [./density]
    type = Density
    density = 10963.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  verbose = true
  nl_abs_tol = 1e-10
  num_steps = 50000
  end_time = 2.002e6
  [./TimeStepper]
    type = IterationAdaptiveDT
    timestep_limiting_function = Fiss_Function
    max_function_change = 3e7
    dt = 1e6
  [../]
[]

[Postprocessors]
  [./Temperature_of_Block]
    type = ElementAverageValue
    variable = temp
    execute_on = 'timestep_end'
  [../]

  [./vonMises]
    type = ElementAverageValue
    variable = vonmises_stress
    execute_on = 'timestep_end'
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

[Problem]
  restart_file_base = adapt_tstep_function_change_restart1_sm_checkpoint_cp/0065
[]

modules/combined/test/tests/contact/sm/pressurePenalty_mechanical_constraint_sm.i

# This is a mechanical constraint (contact formulation) version of pressurePenalty.i
[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = pressure.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[Contact]
  [./m20_s10]
    master = 20
    slave = 10
    penalty = 1e8
    formulation = penalty
    tangential_tolerance = 1e-3
    system = constraint
    tension_release = -1
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 5
    value = 0.0
  [../]

  [./Pressure]
    [./press]
      boundary = 7
      factor = 1e3
    [../]
  [../]

  [./down]
    type = DirichletBC
    variable = disp_y
    boundary = 8
    value = -2e-3
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
  [./stiffStuff2]
    type = Elastic
    block = 2

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-9

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/tensile/planar3.i

# checking for small deformation
# A single element is stretched by 1E-6m in the z and x directions, with lame mu = 1E6, so trial stress is 2Pa in those directions
# tensile_strength is set to 1Pa
# Then the final stress should return to the z and x stresses being 1.0 (up to tolerance), and internal parameter = (0.5+0.5)E-6 = 1.0E-6
# Using 'planar' Tensile plasticity

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
    outputs = console
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./hard]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tens]
    type = TensorMechanicsPlasticTensileMulti
    tensile_strength = hard
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    max_NR_iterations = 4
    min_stepsize = 1
    plastic_models = tens
    debug_fspb = crash
    debug_jac_at_stress = '1 2 3 2 -4 -5 3 -5 10'
    debug_jac_at_pm = '0.1 0.2 0.3'
    debug_jac_at_intnl = 1E-6
    debug_stress_change = 1E-6
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = 1E-6
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar3
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_4/cyl4_template2_sm.i

[Mesh]
  file = cyl4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 stress_yy stress_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

test/tests/multiapps/grid-sequencing/vi-coarser.i

l=10
nx=20
num_steps=2

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmax = ${l}
  nx = ${nx}
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [bounds][]
[]

[Bounds]
  [bounds]
    type = BoundsAux
    variable = bounds
    bounded_variable = u
    upper = ${l}
    lower = 0
  []
[]

[ICs]
  [u]
    type = FunctionIC
    variable = u
    function = 'x'
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = Diffusion
    variable = u
  []
  [ffn]
    type = BodyForce
    variable = u
    function = 'if(x<5,-1,1)'
  []
[]

[BCs]
  [left]
    type = DirichletBC
    boundary = left
    value = 0
    variable = u
  []
  [right]
    type = DirichletBC
    boundary = right
    value = ${l}
    variable = u
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  num_steps = ${num_steps}
  solve_type = NEWTON
  dtmin = 1
  petsc_options = '-snes_vi_monitor'
  petsc_options_iname = '-snes_max_linear_solve_fail -ksp_max_it -pc_type -sub_pc_factor_levels -snes_linesearch_type -snes_type'
  petsc_options_value = '0                           30          asm      16                    basic                 vinewtonrsls'
[]

[Outputs]
  exodus = true
  [csv]
    type = CSV
    execute_on = 'nonlinear timestep_end'
  []
  [dof]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Debug]
  show_var_residual_norms = true
[]

[Postprocessors]
  active = 'upper_violations lower_violations'
  [upper_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = ${fparse 10+1e-8}
    comparator = 'greater'
  []
  [lower_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = -1e-8
    comparator = 'less'
  []
  [nls]
    type = NumNonlinearIterations
  []
  [cum_nls]
    type = CumulativeValuePostprocessor
    postprocessor = nls
  []
[]

modules/peridynamics/test/tests/generalized_plane_strain/generalized_plane_strain_NOSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  scalar_out_of_plane_strain = scalar_strain_zz
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/Peridynamics/Mechanics]
  [./Master]
    [./all]
      formulation = NONORDINARY_STATE
    [../]
  [../]
  [./GeneralizedPlaneStrain]
    [./all]
      formulation = NONORDINARY_STATE
    [../]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    boundary = 1000
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 1000
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./strain]
    type = ComputePlaneSmallStrainNOSPD
    eigenstrain_names = thermal
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = thermal
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

[Outputs]
  exodus = true
  file_base = generalized_plane_strain_NOSPD
[]

test/tests/geomsearch/2d_moving_penetration/pl_test2q.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test2q.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1.e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test2q_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/multi/rock1.i

# Plasticity models:
# Mohr-Coulomb with cohesion = 40MPa, friction angle = 35deg, dilation angle = 10deg
# Tensile with strength = 1MPa
# WeakPlaneShear with cohesion = 1MPa, friction angle = 25deg, dilation angle = 25deg
# WeakPlaneTensile with strength = 0.01MPa
#
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 1234
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 1234
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./f3]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 3
    variable = f3
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
  [./int3]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 3
    variable = int3
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./raw_f0]
    type = ElementExtremeValue
    variable = f0
    outputs = console
  [../]
  [./raw_f1]
    type = ElementExtremeValue
    variable = f1
    outputs = console
  [../]
  [./raw_f2]
    type = ElementExtremeValue
    variable = f2
    outputs = console
  [../]
  [./raw_f3]
    type = ElementExtremeValue
    variable = f3
    outputs = console
  [../]
  [./iter]
    type = ElementExtremeValue
    variable = iter
    outputs = console
  [../]
  [./f0]
    type = FunctionValuePostprocessor
    function = should_be_zero0_fcn
  [../]
  [./f1]
    type = FunctionValuePostprocessor
    function = should_be_zero1_fcn
  [../]
  [./f2]
    type = FunctionValuePostprocessor
    function = should_be_zero2_fcn
  [../]
  [./f3]
    type = FunctionValuePostprocessor
    function = should_be_zero3_fcn
  [../]
[]

[Functions]
  [./should_be_zero0_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f0'
  [../]
  [./should_be_zero1_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f1'
  [../]
  [./should_be_zero2_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f2'
  [../]
  [./should_be_zero3_fcn]
    type = ParsedFunction
    value = 'if(a<1E-1,0,a)'
    vars = 'a'
    vals = 'raw_f3'
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 4E7
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 10
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4E6
    yield_function_tolerance = 1.0E-1
    internal_constraint_tolerance = 1.0E-7
  [../]

  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./tensile]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    tensile_tip_smoother = 1E5
    yield_function_tolerance = 1.0E-1
    internal_constraint_tolerance = 1.0E-7
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.46630766
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.46630766
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 1E5
    yield_function_tolerance = 1.0E-1
    internal_constraint_tolerance = 1.0E-7
  [../]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 0.01E6
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1.0E-1
    internal_constraint_tolerance = 1.0E-7
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 1.3E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-7
    plastic_models = 'mc tensile wps wpt'
    deactivation_scheme = 'optimized_to_safe_to_dumb'
    max_NR_iterations = 20
    min_stepsize = 1E-4
    max_stepsize_for_dumb = 1E-3
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1 1'
    debug_jac_at_intnl = '1 1 1 1'
    debug_stress_change = 1E1
    debug_pm_change = '1E-6 1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = rock1
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cto28.i

#Cosserat capped weak plane and capped drucker prager
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 0.4
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    yield_function_tolerance = 1E-11     # irrelevant here
    internal_constraint_tolerance = 1E-9 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 10.0
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '10 0 0  0 10 0  0 0 10'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'dp'
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
  [../]
  [./dp]
    type = CappedDruckerPragerStressUpdate
    base_name = dp
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-11
    tip_smoother = 1
    smoothing_tol = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  end_time = 1
  dt = 1
  type = Transient
[]

modules/porous_flow/examples/tutorial/08.i

# Unsaturated Darcy-Richards flow
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    input = annular
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
  [../]
[]

[PorousFlowUnsaturated]
  porepressure = porepressure
  coupling_type = Hydro
  gravity = '0 0 0'
  fp = the_simple_fluid
  relative_permeability_exponent = 3
  relative_permeability_type = Corey
  residual_saturation = 0.1
  van_genuchten_alpha = 1E-6
  van_genuchten_m = 0.6
[]

[BCs]
  [./production]
    type = PorousFlowSink
    variable = porepressure
    fluid_phase = 0
    flux_function = 1E-2
    use_relperm = true
    boundary = injection_area
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      viscosity = 1.0E-3
      density0 = 1000.0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityConst
    block = aquifer
    permeability = '1E-14 0 0   0 1E-14 0   0 0 1E-14'
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityConst
    block = caps
    permeability = '1E-15 0 0   0 1E-15 0   0 0 1E-16'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E5
  nl_abs_tol = 1E-7
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/inertial_torque/residual.i

# Checking that the InertialTorque calculates the correct residual.
# This input file does not have any physical meaning!  It is simply checking
# the residual is computed correctly in a very simple setting.
#
# The following displacements are prescribed
# disp_x = 1+t
# disp_y = -2(1+t)
# disp_z = 2(1+t)
# along with the velocities (which don't follow from the displacements!)
# vel_x = -2(t+1)
# vel_y = -5(t+1)
# vel_z = t+1
# and accelerations
# accel_x = -t+2
# accel_y = -5t+2
# accel_z = t+2
#
# Using the Newmark + Damping parameters
# beta = 1/4
# gamma = 1/2
# eta = 1/4
# alpha = 1/2
# There give
# accel_x = 11.75
# accel_y = 11
# accel_z = 3
#
# The InertialTorque should compute
# Residual_0 = rho * eps_0jk * disp_j * accel_k
#            = rho * (disp_y * accel_z - disp_z * accel_y)
#            = -56 * rho
# Residual_1 = rho * eps_0jk * disp_j * accel_k
#            = rho * (disp_z * accel_x - disp_x * accel_z)
#            = 41 * rho
# Residual_2 = rho * eps_2jk * disp_j * accel_k
#            = rho * (disp_x * accel_y - disp_y * accel_x)
#            = 69 * rho
# These get integrated over the unit element to give (1/8)^th of these
# values at each node
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  velocities = 'vel_x vel_y vel_z'
  accelerations = 'accel_x accel_y accel_z'
  beta = 0.25
  gamma = 0.5
  alpha = 0.5
  eta = 0.25
[]

[Variables]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  [./icm_x]
    type = InertialTorque
    component = 0
    variable = wc_x
    save_in = res_x
  [../]
  [./icm_y]
    type = InertialTorque
    component = 1
    variable = wc_y
    density = another_density
    save_in = res_y
  [../]
  [./icm_z]
    type = InertialTorque
    component = 2
    variable = wc_z
    density = yet_another_density
    save_in = res_z
  [../]
[]

[AuxVariables]
  [./res_x]
  [../]
  [./res_y]
  [../]
  [./res_z]
  [../]
  [./disp_x]
    initial_condition = 1
  [../]
  [./disp_y]
    initial_condition = -2
  [../]
  [./disp_z]
    initial_condition = 2
  [../]
  [./vel_x]
    initial_condition = -2
  [../]
  [./vel_y]
    initial_condition = -5
  [../]
  [./vel_z]
    initial_condition = 1
  [../]
  [./accel_x]
    initial_condition = 2
  [../]
  [./accel_y]
    initial_condition = 2
  [../]
  [./accel_z]
    initial_condition = 2
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = FunctionAux
    variable = disp_x
    function = '1+t'
  [../]
  [./disp_y]
    type = FunctionAux
    variable = disp_y
    function = '-2*(1+t)'
  [../]
  [./disp_z]
    type = FunctionAux
    variable = disp_z
    function = '2*(1+t)'
  [../]
  [./vel_x]
    type = FunctionAux
    variable = vel_x
    function = '-2*t'
  [../]
  [./vel_y]
    type = FunctionAux
    variable = vel_y
    function = '-5*t'
  [../]
  [./vel_z]
    type = FunctionAux
    variable = vel_z
    function = 't'
  [../]
  [./accel_x]
    type = FunctionAux
    variable = accel_x
    function = '-t+2'
  [../]
  [./accel_y]
    type = FunctionAux
    variable = accel_y
    function = '-5*t+2'
  [../]
  [./accel_z]
    type = FunctionAux
    variable = accel_z
    function = 't+2'
  [../]
[]

[Postprocessors]
  [./res_x]
    type = PointValue
    point = '0 0 0'
    variable = res_x
  [../]
  [./res_y]
    type = PointValue
    point = '0 0 0'
    variable = res_y
  [../]
  [./res_z]
    type = PointValue
    point = '0 0 0'
    variable = res_z
  [../]
[]

[Materials]
  [./density]
    type = GenericConstantMaterial
    prop_names = 'density another_density yet_another_density'
    prop_values = '2.0 8.0 16.0'
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 1
  nl_abs_tol = 1E30 # large because there is no way of getting to residual=0 here
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/interaction_integral/interaction_integral_3d_as_2d.i

#This tests the Interaction-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with one element
#through the thickness, and calculates the Interaction-Integrals using options
#to treat it as 2d.

[GlobalParams]
  order = FIRST
#  order = SECOND
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack_3d_as_2d.e
  displacements = 'disp_x disp_y disp_z'
  partitioner = centroid
  centroid_partitioner_direction = z
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = 'InteractionIntegralKI InteractionIntegralKII InteractionIntegralKIII'
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  block = 1
  youngs_modulus = 207000
  poissons_ratio = 0.3
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]


[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = interaction_integral_3d_as_2d_out
  exodus = true
  csv = true
[]

modules/combined/test/tests/mortar_tm/2d/ad_frictionless_fir/finite.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite'

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = -0.3
    xmax = 0.3
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.31
    xmax = 0.91
    ymin = 7.7
    ymax = 8.5
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.6  7.7  0
              0.91 8.0  0
              0.6  8.5 0
              0.31 8.0  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./action]
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank block'
    use_automatic_differentiation = true
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = ADFunctionDirichletBC
    variable = disp_x
    boundary = block_right
    function = '-0.04*sin(4*(t+1.5))+0.02'
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 13.5
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/tensor_mechanics/test/tests/2D_geometries/2D-RZ_centerline_VLC.i

# Simple test to check for use of AxisymmetricCenterlineAverageValue with
# volumetric_locking_correction activated in a tensor mechanics simulation

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
  volumetric_locking_correction = true
[]

[Problem]
  coord_type = RZ
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
  [../]
[]

[AuxVariables]
  [./temperature]
    initial_condition = 298.0
  [../]
[]

[BCs]
  [./symmetry_x]
    type = DirichletBC
    variable = disp_r
    value = 0
    boundary = left
  [../]
  [./roller_z]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = bottom
  [../]
  [./top_load]
    type = FunctionDirichletBC
    variable = disp_z
    function = -0.01*t
    boundary = top
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.3
  [../]
  [./_elastic_strain]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-6
  l_max_its = 50

  start_time = 0.0
  end_time = 0.3
  dt = 0.1
[]

[Postprocessors]
  [./center_temperature]
    type = AxisymmetricCenterlineAverageValue
    variable = temperature
    boundary = left
  [../]
[]

[Outputs]
  csv = true
  perf_graph = true
[]

modules/combined/test/tests/sliding_block/in_and_out/dirac/sm/frictional_02_penalty_sm.i

#  This is a benchmark test that checks Dirac based frictional
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2 and a friction coefficient
#  of 0.2 is used.  The gold file is run on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    penalty = 1e+7
    formulation = penalty
    friction_coefficient = 0.2
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/solid_mechanics/test/tests/CLSH_smallstrain/CLSH_smallstrain.i

#This is a test of the CLSHPlasticMaterial (creep linear strain hardening) model using the small strain formulation.  Note that this isn't a thermal or irradiation creep model.
#The material CLSHPlasticMaterial is a visco-plastic material i.e. a
#time-dependent linear strain hardening plasticity model.
#A similar problem was run in Abaqus with exactly the same result, although the element
#used in the Abaqus simulation was a CAX4 element.  Neverthless, due to the boundary conditions
#and load, the Bison and Abaqus result

[Mesh]
  file = 1x1x1cube.e

#  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t/100
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]

  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]

  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]

 []


[BCs]

  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

[]

[Materials]

  [./constant]
    type = CLSHPlasticMaterial
    formulation = LINEAr
    block = 1
    youngs_modulus = 1000.
    poissons_ratio = .3
    yield_stress = 10.
    hardening_constant = 100.
    c_alpha = 0.2418e-6
    c_beta = 0.1135
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  line_search = none


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
#  end_time = 0.3
  num_steps = 30
  dt = 1.
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/ad_thermal_expansion_function/small_linear.i

# This tests the thermal expansion coefficient function using both
# options to specify that function: mean and instantaneous.  There
# two blocks, each containing a single element, and these use the
# two variants of the function.

# In this test, the instantaneous CTE function is a linear function
# while the mean CTE function is an analytic function designed to
# give the same response.  If \bar{alpha}(T) is the mean CTE function,
# and \alpha(T) is the instantaneous CTE function,

# \bar{\alpha}(T) = 1/(T-Tref) \intA^{T}_{Tsf} \alpha(T) dT

# where Tref is the reference temperature used to define the mean CTE
# function, and Tsf is the stress-free temperature.

# This version of the test uses small deformation theory.  The results
# from the two models are identical.

[Mesh]
  file = 'blocks.e'
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[AuxVariables]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    eigenstrain_names = eigenstrain
    generate_output = 'strain_xx strain_yy strain_zz'
    use_automatic_differentiation = true
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
[]

[AuxKernels]
  [./temp]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = temp_func
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ADComputeLinearElasticStress
  [../]
  [./thermal_expansion_strain1]
    type = ADComputeMeanThermalExpansionFunctionEigenstrain
    block = 1
    thermal_expansion_function = cte_func_mean
    thermal_expansion_function_reference_temperature = 0.5
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
  [./thermal_expansion_strain2]
    type = ADComputeInstantaneousThermalExpansionFunctionEigenstrain
    block = 2
    thermal_expansion_function = cte_func_inst
    stress_free_temperature = 0.0
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Functions]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-4'
    value = 'scale * (0.5 * t^2 - 0.5 * tsf^2) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '0 0.0
               2 2.0'
    scale_factor = 1e-4
  [../]

  [./temp_func]
    type = PiecewiseLinear
    xy_data = '0 1
               1 2'
  [../]
[]

[Postprocessors]
  [./disp_1]
    type = NodalMaxValue
    variable = disp_x
    boundary = 101
  [../]

  [./disp_2]
    type = NodalMaxValue
    variable = disp_x
    boundary = 102
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  l_max_its = 100
  l_tol = 1e-4
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-12

  start_time = 0.0
  end_time = 1.0
  dt = 0.1
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/poro_elasticity/pp_generation_unconfined.i

# A sample is constrained on all sides, except its top
# and its boundaries are
# also impermeable.  Fluid is pumped into the sample via a
# volumetric source (ie kg/second per cubic meter), and the
# rise in the top surface, porepressure, and stress are observed.
#
# In the standard poromechanics scenario, the Biot Modulus is held
# fixed and the source has units 1/time.  Then the expected result
# is
# strain_zz = disp_z = BiotCoefficient*BiotModulus*s*t/((bulk + 4*shear/3) + BiotCoefficient^2*BiotModulus)
# porepressure = BiotModulus*(s*t - BiotCoefficient*strain_zz)
# stress_xx = (bulk - 2*shear/3)*strain_zz   (remember this is effective stress)
# stress_zz = (bulk + 4*shear/3)*strain_zz   (remember this is effective stress)
#
# In porous_flow, however, the source has units kg/s/m^3 and the
# Biot Modulus is not held fixed.  This means that disp_z, porepressure,
# etc are not linear functions of t.  Nevertheless, the ratios remain
# fixed:
# stress_xx/strain_zz = (bulk - 2*shear/3) = 1 (for the parameters used here)
# stress_zz/strain_zz = (bulk + 4*shear/3) = 4 (for the parameters used here)
# porepressure/strain_zz = 13.3333333 (for the parameters used here)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1e-5
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = porepressure
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = porepressure
    gravity = '0 0 0'
    fluid_component = 0
  [../]
  [./source]
    type = BodyForce
    function = 0.1
    variable = porepressure
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 3.3333333333
      density0 = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.1
    biot_coefficient = 0.3
    solid_bulk = 2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0   0 1 0   0 0 1' # unimportant
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0 # unimportant in this fully-saturated situation
    phase = 0
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = none
    point = '0 0 0'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = none
    point = '0 0 0.5'
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = none
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = none
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = none
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./stress_xx_over_strain]
    type = FunctionValuePostprocessor
    function = stress_xx_over_strain_fcn
    outputs = csv
  [../]
  [./stress_zz_over_strain]
    type = FunctionValuePostprocessor
    function = stress_zz_over_strain_fcn
    outputs = csv
  [../]
  [./p_over_strain]
    type = FunctionValuePostprocessor
    function = p_over_strain_fcn
    outputs = csv
  [../]
[]

[Functions]
  [./stress_xx_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'stress_xx zdisp'
  [../]
  [./stress_zz_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'stress_zz zdisp'
  [../]
  [./p_over_strain_fcn]
    type = ParsedFunction
    value = a/b
    vars = 'a b'
    vals = 'p0 zdisp'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = pp_generation_unconfined
  [./csv]
    type = CSV
  [../]
[]

modules/phase_field/test/tests/conserved_noise/uniform.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 10.0
  ymin = 0.0
  ymax = 10.0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.9
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Preconditioning]
  active = 'SMP'
  [./SMP]
   type = SMP
   off_diag_row = 'w c'
   off_diag_column = 'c w'
  [../]
[]

[Kernels]
  [./cres]
    type = SplitCHMath
    variable = c
    kappa_name = kappa_c
    w = w
  [../]

  [./wres]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]

  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]

  [./conserved_langevin]
    type = ConservedLangevinNoise
    amplitude = 0.5
    variable = w
    noise = uniform_noise
  []
[]

[BCs]
  [./Periodic]
    [./all]
      variable = 'c w'
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 2.0'
  [../]
[]

[UserObjects]
  [./uniform_noise]
    type = ConservedUniformNoise
  [../]
[]

[Postprocessors]
  [./total_c]
    type = ElementIntegralVariablePostprocessor
    execute_on = 'initial timestep_end'
    variable = c
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'BDF2'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  l_max_its = 30
  l_tol = 1.0e-3

  nl_max_its = 30
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  dt = 10.0
  num_steps = 4
[]

[Outputs]
  file_base = uniform
  exodus = true
  [./csv]
    type = CSV
    delimiter = ' '
  [../]
[]

modules/porous_flow/test/tests/dirackernels/bh_except11.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = bh02.bh
    use_relative_permeability = true
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/level_set/test/tests/transfers/markers/multi_level/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  uniform_refine = 2
[]

[Adaptivity]
  marker = marker
  max_h_level = 2
  cycles_per_step = 2
  [./Indicators]
    [./error]
      type = GradientJumpIndicator
      variable = u
    [../]
  [../]
  [./Markers]
    [./marker]
      type = ErrorFractionMarker
      coarsen = 0.4
      refine = 0.5
      indicator = error
    [../]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Problem]
  type = LevelSetProblem
[]

[Executioner]
  type = Transient
  dt = 0.02
  num_steps = 4
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    input_files = 'sub.i'
    execute_on = TIMESTEP_END
  [../]
[]

[Transfers]
  [./marker_to_sub]
    type = LevelSetMeshRefinementTransfer
    multi_app = sub
    source_variable = marker
    variable = marker
    check_multiapp_execute_on = false
  [../]
[]

[Outputs]
  hide = u
  exodus = true
[]

modules/peridynamics/test/tests/jacobian_check/2D_mechanics_FNOSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  full_jacobian = true
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = NONORDINARY_STATE
    stabilization = FORCE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e5
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeForceStabilizedSmallStrainNOSPD
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_type'
    petsc_options_value = 'bcgs bjacobi test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1
  dt = 1
  num_steps = 1

  [./Quadrature]
    type = GAUSS_LOBATTO
    order = FIRST
  [../]
[]

test/tests/geomsearch/2d_moving_penetration/pl_test4tt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.1
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-10
  l_max_its = 10

  start_time = 0.0
  dt = 0.0125
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test4tt_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_viscoplasticity_stress_update/exact.i

# This test provides comparison to calculated values from Leblond:1994kl

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  pore_shape_model = spherical
[]

[Mesh]
  [./msh]
    type = CartesianMeshGenerator
    dim = 3
    dx = 0.01
    dy = 0.01
    dz = 0.01
    iz = 1
    ix = 1
    iy = 1
  [../]
  [./extra_nodeset]
    type = ExtraNodesetGenerator
    input = msh
    new_boundary = 'origin'
    coord = '0 0 0'
  []
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  add_variables = true
  generate_output = 'strain_xx strain_yy strain_xy hydrostatic_stress vonmises_stress'
  use_automatic_differentiation = true
[]

[Functions]
  [./Q_gtn]
    type = ParsedFunction
    vars = 'avg_vonmises gtn_gauge_stress'
    vals = 'avg_vonmises gtn_gauge_stress'
    value = 'avg_vonmises/gtn_gauge_stress'
  [../]
  [./M_gtn]
    type = ParsedFunction
    vars = 'avg_hydro gtn_gauge_stress'
    vals = 'avg_hydro gtn_gauge_stress'
    value = 'abs(avg_hydro) / gtn_gauge_stress'
  [../]
  [./Q_ten]
    type = ParsedFunction
    vars = 'avg_vonmises ten_gauge_stress'
    vals = 'avg_vonmises ten_gauge_stress'
    value = 'avg_vonmises/ten_gauge_stress'
  [../]
  [./M_ten]
    type = ParsedFunction
    vars = 'avg_hydro ten_gauge_stress'
    vals = 'avg_hydro ten_gauge_stress'
    value = 'abs(avg_hydro) / ten_gauge_stress'
  [../]
  [./Q_five]
    type = ParsedFunction
    vars = 'avg_vonmises five_gauge_stress'
    vals = 'avg_vonmises five_gauge_stress'
    value = 'avg_vonmises/five_gauge_stress'
  [../]
  [./M_five]
    type = ParsedFunction
    vars = 'avg_hydro five_gauge_stress'
    vals = 'avg_hydro five_gauge_stress'
    value = 'abs(avg_hydro) / five_gauge_stress'
  [../]
  [./Q_three]
    type = ParsedFunction
    vars = 'avg_vonmises three_gauge_stress'
    vals = 'avg_vonmises three_gauge_stress'
    value = 'avg_vonmises / three_gauge_stress'
  [../]
  [./M_three]
    type = ParsedFunction
    vars = 'avg_hydro three_gauge_stress'
    vals = 'avg_hydro three_gauge_stress'
    value = 'abs(avg_hydro) / three_gauge_stress'
  [../]
  [./Q_two]
    type = ParsedFunction
    vars = 'avg_vonmises two_gauge_stress'
    vals = 'avg_vonmises two_gauge_stress'
    value = 'avg_vonmises/two_gauge_stress'
  [../]
  [./M_two]
    type = ParsedFunction
    vars = 'avg_hydro two_gauge_stress'
    vals = 'avg_hydro two_gauge_stress'
    value = 'abs(avg_hydro) / two_gauge_stress'
  [../]
  [./Q_onepointfive]
    type = ParsedFunction
    vars = 'avg_vonmises onepointfive_gauge_stress'
    vals = 'avg_vonmises onepointfive_gauge_stress'
    value = 'avg_vonmises / onepointfive_gauge_stress'
  [../]
  [./M_onepointfive]
    type = ParsedFunction
    vars = 'avg_hydro onepointfive_gauge_stress'
    vals = 'avg_hydro onepointfive_gauge_stress'
    value = 'abs(avg_hydro) / onepointfive_gauge_stress'
  [../]
  [./Q_one]
    type = ParsedFunction
    vars = 'avg_vonmises one_gauge_stress'
    vals = 'avg_vonmises one_gauge_stress'
    value = 'avg_vonmises / one_gauge_stress'
  [../]
  [./M_one]
    type = ParsedFunction
    vars = 'avg_hydro one_gauge_stress'
    vals = 'avg_hydro one_gauge_stress'
    value = 'abs(avg_hydro) / one_gauge_stress'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ADComputeMultiplePorousInelasticStress
    inelastic_models = 'gtn lps_ten lps_five lps_three lps_two lps_onepointfive lps_one'
    initial_porosity = 1e-3
    outputs = all
    extra_stress_names = extra_stress
  [../]

  [./gtn]
    type = ADViscoplasticityStressUpdate
    coefficient = 0
    power = 1 # arbitrary
    viscoplasticity_model = GTN
    base_name = gtn
    outputs = all
    relative_tolerance = 1e-30
  [../]
  [./lps_ten]
    type = ADViscoplasticityStressUpdate
    coefficient = 0
    power = 10
    base_name = ten
    outputs = all
    relative_tolerance = 1e-30
  [../]
  [./lps_five]
    type = ADViscoplasticityStressUpdate
    coefficient = 0
    power = 5
    base_name = five
    outputs = all
    relative_tolerance = 1e-30
  [../]
  [./lps_three]
    type = ADViscoplasticityStressUpdate
    coefficient = 0
    power = 3
    base_name = three
    outputs = all
    relative_tolerance = 1e-30
  [../]
  [./lps_two]
    type = ADViscoplasticityStressUpdate
    coefficient = 0
    power = 2
    base_name = two
    outputs = all
    relative_tolerance = 1e-30
  [../]
  [./lps_onepointfive]
    type = ADViscoplasticityStressUpdate
    coefficient = 0
    power = 1.5
    base_name = onepointfive
    outputs = all
    relative_tolerance = 1e-30
  [../]
  [./lps_one]
    type = ADViscoplasticityStressUpdate
    coefficient = 0
    power = 1
    base_name = one
    outputs = all
    relative_tolerance = 1e-30
  [../]

  [./const_stress]
    type = ComputeExtraStressConstant
    extra_stress_tensor = '1 1 1 1 1 1 1 1 1'
    outputs = all
  [../]
[]

[BCs]
  [./no_disp_x]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_disp_y]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./no_disp_z]
    type = ADDirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./Pressure]
    [./bcs]
      boundary = 'top right front'
      function = '10^(t/4.5)'
      use_automatic_differentiation = true
    [../]
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  num_steps = 10
  nl_abs_tol = 1e-8
[]

[Postprocessors]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
  [../]
  [./gtn_gauge_stress]
    type = ElementAverageValue
    variable = gtn_gauge_stress
    outputs = none
  [../]
  [./0Q_gtn]
    type = FunctionValuePostprocessor
    function = Q_gtn
  [../]
  [./0M_gtn]
    type = FunctionValuePostprocessor
    function = M_gtn
  [../]
  [./ten_gauge_stress]
    type = ElementAverageValue
    variable = ten_gauge_stress
    outputs = none
  [../]
  [./1Q_ten]
    type = FunctionValuePostprocessor
    function = Q_ten
  [../]
  [./1M_ten]
    type = FunctionValuePostprocessor
    function = M_ten
  [../]
  [./five_gauge_stress]
    type = ElementAverageValue
    variable = five_gauge_stress
    outputs = none
  [../]
  [./2Q_five]
    type = FunctionValuePostprocessor
    function = Q_five
  [../]
  [./2M_five]
    type = FunctionValuePostprocessor
    function = M_five
  [../]
  [./three_gauge_stress]
    type = ElementAverageValue
    variable = three_gauge_stress
    outputs = none
  [../]
  [./3Q_three]
    type = FunctionValuePostprocessor
    function = Q_three
  [../]
  [./3M_three]
    type = FunctionValuePostprocessor
    function = M_three
  [../]
  [./two_gauge_stress]
    type = ElementAverageValue
    variable = two_gauge_stress
    outputs = none
  [../]
  [./4Q_two]
    type = FunctionValuePostprocessor
    function = Q_two
  [../]
  [./4M_two]
    type = FunctionValuePostprocessor
    function = M_two
  [../]
  [./onepointfive_gauge_stress]
    type = ElementAverageValue
    variable = onepointfive_gauge_stress
    outputs = none
  [../]
  [./5Q_onepointfive]
    type = FunctionValuePostprocessor
    function = Q_onepointfive
  [../]
  [./5M_onepointfive]
    type = FunctionValuePostprocessor
    function = M_onepointfive
  [../]
  [./one_gauge_stress]
    type = ElementAverageValue
    variable = one_gauge_stress
    outputs = none
  [../]
  [./6Q_one]
    type = FunctionValuePostprocessor
    function = Q_one
  [../]
  [./6M_one]
    type = FunctionValuePostprocessor
    function = M_one
  [../]
[]

[Outputs]
  csv = true
  file_base = exact_spherical_out
[]

test/tests/mortar/continuity-2d-conforming/equalgradient.i

[Mesh]
  [file]
    type = FileMeshGenerator
    file = 2blk-conf.e
  []
  [slave]
    input = file
    type = LowerDBlockFromSidesetGenerator
    sidesets = '101'
    new_block_id = '10001'
    new_block_name = 'slave_lower'
  []
  [master]
    input = slave
    type = LowerDBlockFromSidesetGenerator
    sidesets = '100'
    new_block_id = '10000'
    new_block_name = 'master_lower'
  []
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    block = '1 2'
  [../]

  [./lmx]
    order = FIRST
    family = LAGRANGE
    block = 'slave_lower'
  [../]
  [./lmy]
    order = FIRST
    family = LAGRANGE
    block = 'slave_lower'
  [../]
[]

[ICs]
  [./block1]
    type = FunctionIC
    variable = u
    block = 1
    function = y
  [../]
  [./block2]
    type = FunctionIC
    variable = u
    block = 2
    function = y-0.5
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
[]

[Constraints]
  [./cedx]
    type = EqualGradientConstraint
    slave_variable = u
    variable = lmx
    master_boundary = 100
    master_subdomain = 10000
    slave_boundary = 101
    slave_subdomain = 10001
    component = 0
  [../]
  [./cedy]
    type = EqualGradientConstraint
    slave_variable = u
    variable = lmy
    master_boundary = 100
    master_subdomain = 10000
    slave_boundary = 101
    slave_subdomain = 10001
    component = 1
  [../]
[]

[BCs]
  [./all]
    type = DiffusionFluxBC
    variable = u
    boundary = '2 4 100 101'
  [../]
  [./boundary]
    type = DirichletBC
    boundary = 1
    variable = u
    value = 0.0
  [../]
  [./top]
    type = FunctionDirichletBC
    boundary = 3
    variable = u
    function = 0.5-t
  [../]
[]

[Preconditioning]
  [./fmp]
    type = SMP
    full = true
    solve_type = 'NEWTON'
  [../]
[]

[Executioner]
  type = Transient
  nl_rel_tol = 1e-11
  l_tol = 1e-10
  l_max_its = 10
  dt = 0.05
  num_steps = 3
[]

[Outputs]
  exodus = true
  print_linear_residuals = false
[]

test/tests/postprocessors/element_integral_var_pps/initial_pps.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 3
  ny = 3
  elem_type = QUAD9
[]

[Variables]
  active = 'u v'

  [./u]
    order = SECOND
    family = LAGRANGE
    [./InitialCondition]
      type = ConstantIC
      value = 2.8
    [../]
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
    [./InitialCondition]
      type = ConstantIC
      value = 5.4
    [../]
  [../]
[]

[Functions]
  active = 'force_fn exact_fn left_bc'

  [./force_fn]
    type = ParsedFunction
    value = '1-x*x+2*t'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = '(1-x*x)*t'
  [../]

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = '
    time_u diff_u ffn_u
    time_v diff_v'

  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'all_u left_v right_v'

  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '1'
    value = 0
  [../]
[]

[Postprocessors]
  [./initial_u]
    type = ElementIntegralVariablePostprocessor
    variable = u
    execute_on = initial
  [../]

  [./initial_v]
    type = ElementIntegralVariablePostprocessor
    variable = v
    execute_on = initial
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 0.3
[]

[Outputs]
  file_base = out_initial_pps
  exodus = true
[]

modules/tensor_mechanics/test/tests/tensile/small_deform5_update_version.i

# checking for small deformation
# A single element is incrementally stretched in the in the z and x directions
# This causes the return direction to be along the hypersurface sigma_I = sigma_II,
# and the resulting stresses are checked to lie on the expected yield surface

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '4*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = 'z*(t-0.5)'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0'
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 0.1
  type = Transient
[]


[Outputs]
  file_base = small_deform5_update_version
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/solid_mechanics/test/tests/abaqus_creep_swelling/abaqus_creep_swelling.i

# Swelling test using CREEP subroutine interface

[Mesh]
  # file = cantilever.e
  type = GeneratedMesh
  dim = 3
  xmin = 0.0
  xmax = 15.0
  ymin = 0.0
  ymax = 1.5
  zmin = 0.0
  zmax = 3.0
  nx = 20
  ny = 2
  nz = 4
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  active = ''
  [./stress_mag]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx]
    family = MONOMIAL
  [../]
  [./stress_yy]
    family = MONOMIAL
  [../]
  [./stress_zz]
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]
  active = ''
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    point1 = '0 0 0'
    point2 = '0 1 0'
  [../]
  [./stress_mag]
    type = MaterialTensorAux
    variable = stress_mag
    index = 1
    tensor = stress
    point1 = '0 0 0'
    point2 = '0 1 0'
    quantity = vonmises
  [../]
  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    index = 0
    tensor = stress
    point1 = '0 0 0'
    point2 = '0 1 0'
    block = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    variable = stress_zz
    index = 2
    tensor = stress
    point1 = '0 0 0'
    point2 = '0 1 0'
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = right
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value = 0.0
  [../]
[]

[Materials]
  [./swelling]
    type = AbaqusCreepMaterial
    block = 0
    plugin = ../../plugins/swelling
    poissons_ratio = 0.3
    integration_flag = 0
    num_state_vars = 0
    youngs_modulus = 209000
    solve_definition = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
  # [./solid]
  #   type = Elastic
  #   block = 0
  #   disp_x = disp_x
  #   disp_y = disp_y
  #   disp_z = disp_z
  #   youngs_modulus = 209000
  #   poissons_ratio = 0.3
  # [../]
[]

[Executioner]
  # l_max_its = 60
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew '
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type'
  petsc_options_value = '101 hypre boomeramg'
  nl_rel_tol = 1e-8
  l_tol = 1e-5
  start_time = 0.0
  dt = 1
  num_steps = 1
[]

[Outputs]
  file_base = out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/pressure/pressure_test.i

#
# Pressure Test
#
# This test is designed to compute pressure loads on three faces of a unit cube.
#
# The mesh is composed of one block with a single element.  Symmetry bcs are
# applied to the faces opposite the pressures.  Poisson's ratio is zero,
# which makes it trivial to check displacements.
#


[Mesh]
  type = FileMesh
  file = pressure_test.e
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 1.0
  [../]
  [./zeroRamp]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 0. 1.'
    scale_factor = 1.0
  [../]
  [./rampUnramp]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 0.'
    scale_factor = 10.0
  [../]
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 5
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 1
      function = rampConstant
      displacements = 'disp_x disp_y disp_z'
    [../]
    [./Side2]
      boundary = 2
      function = zeroRamp
      displacements = 'disp_x disp_y disp_z'
      factor = 2.0
    [../]
    [./Side3]
      boundary = 3
      function = rampUnramp
      displacements = 'disp_x disp_y disp_z'
    [../]
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 1
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5e6'
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
    block = 1
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  nl_abs_tol = 1e-10
  l_max_its = 20
  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/phase_field/test/tests/free_energy_material/MathEBFreeEnergy.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 25
  xmax = 50
  ymax = 50
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = THIRD
    family = HERMITE
  [../]
[]

[ICs]
  [./c]
    type = SmoothCircleIC
    variable = c
    x1 = 25.0
    y1 = 25.0
    radius = 6.0
    invalue = 1.0
    outvalue = -0.8
    int_width = 4.0
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./CHSolid]
    type = CahnHilliard
    variable = c
    mob_name = M
    f_name = F
  [../]
  [./CHInterface]
    type = CHInterface
    variable = c
    kappa_name = kappa_c
    mob_name = M
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./constant]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1.0 1.0'
  [../]
  [./free_energy]
    type = MathEBFreeEnergy
    f_name = F
    c = c
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = NEWTON
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 20
  l_tol = 1.0e-5
  nl_max_its = 40
  nl_rel_tol = 5.0e-14

  start_time = 0.0
  num_steps = 1
  dt = 2.0
[]

[Outputs]
  execute_on = 'timestep_end'
  [./oversample]
    type = Exodus
    refinements = 2
  [../]
[]

modules/richards/test/tests/buckley_leverett/bl22_lumped.i

# two-phase version
# super-sharp front version
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 150
  xmin = 0
  xmax = 15
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = 'DensityWater DensityGas'
  relperm_UO = 'RelPermWater RelPermGas'
  SUPG_UO = 'SUPGwater SUPGgas'
  sat_UO = 'SatWater SatGas'
  seff_UO = 'SeffWater SeffGas'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-4 1E-3 1E-2 2E-2 5E-2 6E-2 0.1 0.2'
    x = '0    1E-2 1E-1 1    5    20   40  41'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E6
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-4
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-4
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
  [./bounds_dummy]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsLumpedMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsLumpedMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
  [./richardsppenalty]
    type = RichardsPPenalty
    variable = pgas
    a = 1E-18
    lower_var = pwater
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[Bounds]
  [./pwater_bounds]
    type = BoundsAux
    variable = bounds_dummy
    bounded_variable = pwater
    upper = 1E7
    lower = -110000
  [../]
[]


[ICs]
  [./water_ic]
    type = FunctionIC
    variable = pwater
    function = initial_water
  [../]
  [./gas_ic]
    type = FunctionIC
    variable = pgas
    function = initial_gas
  [../]
[]

[BCs]
  [./left_w]
    type = DirichletBC
    variable = pwater
    boundary = left
    value = 1E6
  [../]
  [./left_g]
    type = DirichletBC
    variable = pgas
    boundary = left
    value = 1000
  [../]
  [./right_w]
    type = DirichletBC
    variable = pwater
    boundary = right
    value = -100000
  [../]
  [./right_g]
    type = DirichletBC
    variable = pgas
    boundary = right
    value = 0
  [../]
[]


[Functions]
  [./initial_water]
    type = ParsedFunction
    value = 1000000*(1-min(x/5,1))-if(x<5,0,100000)
  [../]
  [./initial_gas]
    type = ParsedFunction
    value = 1000
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.15
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    viscosity = '1E-3 1E-6'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'standard'

  [./bounded]
  # must use --use-petsc-dm command line argument
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type -ksp_rtol -ksp_atol'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 50 vinewtonssls 1E-20 1E-20'
  [../]

  [./standard]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it -ksp_rtol -ksp_atol'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10 1E-10 20 1E-10 1E-100'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 50

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = bl22_lumped
  [./exodus]
    type = Exodus
    interval = 100000
    hide = 'pgas bounds_dummy'
    execute_on = 'initial final timestep_end'
  [../]
[]

test/tests/transfers/multiapp_mesh_function_transfer/fromsub_target_displaced.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  displacements = 'x_disp y_disp'
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./transferred_u]
  [../]
  [./elemental_transferred_u]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x_disp]
    initial_condition = -0.1
  [../]
  [./y_disp]
    initial_condition = -0.1
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    positions = '.099 .099 0 .599 .599 0 0.599 0.099 0'
    type = TransientMultiApp
    app_type = MooseTestApp
    input_files = fromsub_sub.i
  [../]
[]

[Transfers]
  [./from_sub]
    source_variable = sub_u
    direction = from_multiapp
    variable = transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
    displaced_target_mesh = true
  [../]
  [./elemental_from_sub]
    source_variable = sub_u
    direction = from_multiapp
    variable = elemental_transferred_u
    type = MultiAppMeshFunctionTransfer
    multi_app = sub
    displaced_target_mesh = true
  [../]
[]

test/tests/transfers/multiapp_interpolation_transfer/fromsub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = .21
  xmax = .79
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./disp_x]
    initial_condition = -0.4
  [../]
  [./disp_y]
  [../]
  [./elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./x_func]
    type = ParsedFunction
    value = x
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./x_func_aux]
    type = FunctionAux
    variable = elemental
    function = x_func
    execute_on = initial
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/sobol/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Postprocessors]
  [left_bc]
    type = NodalVariableValue
    nodeid = 0
    variable = u
  []
  [right_bc]
    type = NodalVariableValue
    nodeid = 10
    variable = u
  []
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/mortar_tm/2drz/ad_frictionless_first/finite.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'finite'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = block_rename
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    use_automatic_differentiation = true
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
  [../]
  [./plank]
    use_automatic_differentiation = true
    strain = FINITE
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = ADFunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ADComputeFiniteStrainElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ADComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/tensor_mechanics/test/tests/2D_geometries/finite_planestrain.i

# This test uses the strain calculator ComputePlaneFiniteStrain,
# which is generated through the use of the TensorMechanics MasterAction.

[Mesh]
  type = GeneratedMesh
  nx = 2
  ny = 2
  dim = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    planar_formulation = PLANE_STRAIN
    add_variables = true
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy strain_zz'
  [../]
[]

[Functions]
  [./pull]
    type = ParsedFunction
    value ='0.005 * t'
  [../]
[]

[BCs]
  [./leftx]
    type = DirichletBC
    boundary = left
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./pull]
    type = FunctionDirichletBC
    boundary = top
    variable = disp_y
    function = pull
  [../]
[]

[Materials]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  l_max_its = 100
  l_tol = 1e-10
  nl_max_its = 10
  nl_rel_tol = 1e-12

  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking_power.i

#
# Simple test of power law softening law for smeared cracking.
# Upon reaching the failure stress in the x direction, the
# softening model abruptly reduces the stress to a fraction
# of its original value, and re-loading occurs at a reduced
# stiffness. This is repeated multiple times.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./displ]
    type = PiecewiseLinear
    x = '0 1 2 3  4'
    y = '0 1 0 -1 0'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[BCs]
  [./pull]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = right
    function = displ
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.8e7
    poissons_ratio = 0
  [../]
  [./elastic_stress]
    type = ComputeSmearedCrackingStress
    cracking_stress = 1.68e6
    softening_models = power_law_softening
  [../]
  [./power_law_softening]
    type = PowerLawSoftening
    stiffness_reduction = 0.3333
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -sub_pc_type'
  petsc_options_value = '101                asm      lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.0
  dt = 0.01
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/dynamics/acceleration_bc/AccelerationBC_test_ti.i

# Test for  Acceleration boundary condition

# This test contains one brick element which is fixed in the y and z direction.
# Base acceleration is applied in the x direction to all nodes on the bottom surface (y=0).

# The PresetAcceleration converts the given acceleration to a displacement
# using Newmark time integration. This displacement is then prescribed on the boundary.
#
# Result: The acceleration at the bottom node should be same as the input acceleration
# which is a triangular function with peak at t = 0.2 in this case. Width of the triangular function
# is 0.2 s.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./TensorMechanics]
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
  [../]

[]

[AuxKernels]
  [./accel_x] # These auxkernels are only to check output
    type = TestNewmarkTI
    displacement = disp_x
    variable = accel_x
    first = false
  [../]
  [./accel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = accel_y
    first = false
  [../]
  [./accel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = accel_z
    first = false
  [../]
  [./vel_x]
    type = TestNewmarkTI
    displacement = disp_x
    variable = vel_x
  [../]
  [./vel_y]
    type = TestNewmarkTI
    displacement = disp_y
    variable = vel_y
  [../]
  [./vel_z]
    type = TestNewmarkTI
    displacement = disp_z
    variable = vel_z
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 0
    index_j = 1
  [../]

[]

[Functions]
  [./acceleration_bottom]
    type = PiecewiseLinear
    data_file = acceleration.csv
    format = columns
  [../]
[]

[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./preset_accelertion]
    type = PresetAcceleration
    boundary = bottom
    function = acceleration_bottom
    variable = disp_x
    beta = 0.25
    acceleration = accel_x
    velocity = vel_x
   [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '210e9 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
  [../]

  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./density]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'
  start_time = 0
  end_time = 2.0
  dt = 0.01
  dtmin = 0.01
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-8
  l_tol = 1e-8
  timestep_tolerance = 1e-8

  # Time integrator scheme
  schem = "newmark-beta"
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp]
    type = NodalVariableValue
    variable = disp_x
    nodeid = 1
  [../]
  [./vel]
    type = NodalVariableValue
    variable = vel_x
    nodeid = 1
  [../]
  [./accel]
    type = NodalVariableValue
    variable = accel_x
    nodeid = 1
  [../]
[]

[Outputs]
  file_base = "AccelerationBC_test_out"
  csv = true
  exodus = true
  perf_graph = true
[]

test/tests/dirackernels/function_dirac_source/function_dirac_source.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 5
  ny = 5
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[DiracKernels]
  [./point_source]
    type = FunctionDiracSource
    variable = u
    function = switch_off
    point = '0.1 0.2 0.0'
  [../]
[]

[Functions]
  [./switch_off]
    type = ParsedFunction
    value = 'if(t < 1.0001, 1, 0)'
  [../]
[]

[BCs]
  [./external]
    type = NeumannBC
    variable = u
    boundary = '0 1 2 3'
    value = 0
  [../]
[]

[Postprocessors]
  [./total_internal_energy]
    type = ElementIntegralVariablePostprocessor
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 1
  l_tol = 1e-03
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/check_error/bulk_modulus_sm.i

[Mesh]
  file = cube.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./goo]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    bulk_modulus = -1e6
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

test/tests/restart/restart_diffusion/restart_diffusion_test_transient_new_name.i

[Mesh]
  file = steady_out.e
[]

[Variables]
  [./u_new]
    order = FIRST
    family = LAGRANGE

    # Testing that we can load a solution from a different variable name
    initial_from_file_var = u
    initial_from_file_timestep = 2
  [../]
[]

[Kernels]
  active = 'bodyforce ie'

  [./bodyforce]
    type = BodyForce
    variable = u_new
    value = 10.0
  [../]

  [./ie]
    type = TimeDerivative
    variable = u_new
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u_new
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u_new
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 10
  dt = .1
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/PolynomialFreeEnergy/split_order4_test.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 15
  xmin = 0
  xmax = 125
[]

[GlobalParams]
  polynomial_order = 4
[]

[Variables]
  [./c]
  [../]
  [./w]
  [../]
[]

[ICs]
  [./c_IC]
    type = SmoothCircleIC
    x1 = 0.0
    y1 = 0.0
    radius = 60.0
    invalue = 1.0
    outvalue = 0.1
    int_width = 60.0
    variable = c
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    kappa_name = kappa
    w = w
    f_name = F
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[Materials]
  [./Copper]
    type = PFParamsPolyFreeEnergy
    c = c
    T = 1000 # K
    int_width = 30.0
    length_scale = 1.0e-9
    time_scale = 1.0e-9
    D0 = 3.1e-5 # m^2/s, from Brown1980
    Em = 0.71 # in eV, from Balluffi1978 Table 2
    Ef = 1.28 # in eV, from Balluffi1978 Table 2
    surface_energy = 0.7 # Total guess
  [../]
  [./free_energy]
    type = PolynomialFreeEnergy
    c = c
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  start_time = 0.0
  num_steps = 50
  dt = 15
  petsc_options_iname = -pc_type
  petsc_options_value = lu
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/recharge_discharge/rd01.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  # very little mesh dependence here
  nx = 120
  ny = 1
  xmin = 0
  xmax = 6
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1 10 500 5000 5000'
    x = '0 10 100 1000 10000 100000'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1E3
    bulk_mod = 2E7
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.336
    al = 1.43E-4
  [../]
  [./RelPermPower]
    type = RichardsRelPermVG1
    scut = 0.99
    simm = 0.0
    m = 0.336
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1.0E+2
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = -72620.4
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]


[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]


[BCs]
  active = 'recharge'
  [./recharge]
    type = RichardsPiecewiseLinearSink
    variable = pressure
    boundary = 'right'
    pressures = '0 1E9'
    bare_fluxes = '-2.315E-3 -2.315E-3'
    use_relperm = false
    use_mobility = false
  [../]
[]


[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.33
    mat_permeability = '0.295E-12 0 0  0 0.295E-12 0  0 0 0.295E-12'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1.01E-3
    gravity = '-10 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  active = 'andy'

  [./andy]
    type = SMP
    full = true
    petsc_options = ''
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-13 1E-15 10000'
  [../]
[]


[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 359424

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]


[Outputs]
  file_base = rd01
  interval = 100000
  execute_on = 'initial final'
  exodus = true
[]

test/tests/meshgenerators/patch_mesh_generator/patch_mesh_generator.i

[Mesh]
  [./patch]
    type = PatchMeshGenerator
    dim = 2
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  start_time = 0.0
  end_time = 1.0
  dt = 1.0
[]

[Outputs]
  file_base = patch_out.e
  exodus = true
[]

test/tests/userobjects/shape_element_user_object/simple_shape_element_uo_test.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = FunctionIC
      function = (x-0.5)^2
    [../]
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]
  [./time_u]
    type = TimeDerivative
    variable = u
  [../]
  [./shape_u]
    type = SimpleTestShapeElementKernel
    user_object = example_uo
    variable = u
  [../]
[]

[UserObjects]
  [./example_uo]
    type = SimpleTestShapeElementUserObject
    u = u
    # as this userobject computes quantities for both the residual AND the jacobian
    # it needs to have these execute_on flags set.
    execute_on = 'linear nonlinear'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options = '-snes_test_display'
  petsc_options_iname = '-snes_type'
  petsc_options_value = 'test'
  dt = 0.1
  num_steps = 2
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/test_jacobian/jacobian_test_3D.i

# This test is designed to test the jacobian for a single
# element with/without volumetric locking correction.

# The mesh contains one element whose y displacement is zero at
# the bottom surface (y=0) and -1.0 at the top surface (y=1).

# Result: The hand coded jacobian matches well with the finite
# difference jacobian with an error norm in the order of 1e-15
# for total and incremental small strain cases and with an error
# norm in the order of 1e-8 for finite strain cases.


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
  [../]
[]

[BCs]
  [./y_force]
    type = NeumannBC
    variable = disp_y
    boundary = top
    value = -1.0
  [../]

  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = 0
  [../]
  [./stress]
    block = 0
  [../]
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient #Transient

  solve_type = NEWTON
  petsc_options = '-snes_check_jacobian -snes_check_jacobian_view'

  l_max_its = 100
  nl_abs_tol = 1e-4
  start_time = 0.0
  num_steps = 1
  dt = 0.005
  dtmin = 0.005
  end_time = 0.005
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/MultiPhase/acmultiinterface_aux.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 10
  nz = 0
  xmin = -10
  xmax = 10
  ymin = -5
  ymax = 5
  elem_type = QUAD4
[]

[AuxVariables]
  [./eta1]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = -3.5
      y1 =  0.0
      radius = 4.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 2.0
    [../]
  [../]
[]

[Variables]
  [./eta2]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 =  3.5
      y1 =  0.0
      radius = 4.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 2.0
    [../]
  [../]
  [./eta3]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SpecifiedSmoothCircleIC
      x_positions = '-4.0 4.0'
      y_positions = ' 0.0 0.0'
      z_positions = ' 0.0 0.0'
      radii = '4.0 4.0'
      invalue = 0.1
      outvalue = 0.9
      int_width = 2.0
    [../]
  [../]

  [./lambda]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1.0
  [../]
[]

[Kernels]
  [./deta2dt]
    type = TimeDerivative
    variable = eta2
  [../]
  [./ACBulk2]
    type = AllenCahn
    variable = eta2
    args = 'eta1 eta3'
    mob_name = L2
    f_name = F
  [../]
  [./ACInterface2]
    type = ACMultiInterface
    variable = eta2
    etas = 'eta1 eta2 eta3'
    mob_name = L2
    kappa_names = 'kappa21 kappa22 kappa23'
  [../]
  [./lagrange2]
    type = SwitchingFunctionConstraintEta
    variable = eta2
    h_name   = h2
    lambda = lambda
  [../]

  [./deta3dt]
    type = TimeDerivative
    variable = eta3
  [../]
  [./ACBulk3]
    type = AllenCahn
    variable = eta3
    args = 'eta1 eta2'
    mob_name = L3
    f_name = F
  [../]
  [./ACInterface3]
    type = ACMultiInterface
    variable = eta3
    etas = 'eta1 eta2 eta3'
    mob_name = L3
    kappa_names = 'kappa31 kappa32 kappa33'
  [../]
  [./lagrange3]
    type = SwitchingFunctionConstraintEta
    variable = eta3
    h_name   = h3
    lambda = lambda
  [../]

  [./lagrange]
    type = SwitchingFunctionConstraintLagrange
    variable = lambda
    etas    = 'eta1 eta2 eta3'
    h_names = 'h1   h2   h3'
    epsilon = 0
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'Fx  L1 L2 L3  kappa11 kappa12 kappa13 kappa21 kappa22 kappa23 kappa31 kappa32 kappa33'
    prop_values = '0   1  1  1   1       1       1       1       1       1       1       1       1      '
  [../]

  [./switching1]
    type = SwitchingFunctionMaterial
    function_name = h1
    eta = eta1
    h_order = SIMPLE
  [../]
  [./switching2]
    type = SwitchingFunctionMaterial
    function_name = h2
    eta = eta2
    h_order = SIMPLE
  [../]
  [./switching3]
    type = SwitchingFunctionMaterial
    function_name = h3
    eta = eta3
    h_order = SIMPLE
  [../]

  [./barrier]
    type = MultiBarrierFunctionMaterial
    etas = 'eta1 eta2 eta3'
  [../]

  [./free_energy]
    type = DerivativeMultiPhaseMaterial
    f_name = F
    # we use a constant free energy (GeneriConstantmaterial property Fx)
    fi_names = 'Fx  Fx  Fx'
    hi_names = 'h1  h2  h3'
    etas     = 'eta1 eta2 eta3'
    # the free energy is given by the MultiBarrierFunctionMaterial only
    W = 1
    derivative_order = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'PJFNK'
  #petsc_options = '-snes_ksp -snes_ksp_ew'
  #petsc_options = '-ksp_monitor_snes_lg-snes_ksp_ew'
  #petsc_options_iname = '-ksp_gmres_restart'
  #petsc_options_value = '1000              '

  l_max_its = 15
  l_tol = 1.0e-6

  nl_max_its = 50
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  num_steps = 2
  dt = 0.2
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/navier_stokes/test/tests/ins/RZ_cone/RZ_cone_stab_jac_test.i

[GlobalParams]
  gravity = '0 0 0'
  laplace = true
  transient_term = true
  supg = true
  pspg = true
  family = LAGRANGE
  order = SECOND
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
  xmin = 0
  xmax = 1.1
  ymin = -1.1
  ymax = 1.1
  elem_type = QUAD9
[]

[Problem]
  coord_type = RZ
[]

[Preconditioning]
  [./SMP_PJFNK]
    type = SMP
    full = true
    solve_type = NEWTON
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1.1
  # petsc_options = '-snes_test_display'
  petsc_options_iname = '-snes_type'
  petsc_options_value = 'test'
[]

[Variables]
  [./vel_x]
    # Velocity in radial (r) direction
  [../]
  [./vel_y]
    # Velocity in axial (z) direction
  [../]
  [./p]
    order = FIRST
  [../]
[]


[Kernels]
  [./x_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_x
  [../]
  [./y_momentum_time]
    type = INSMomentumTimeDerivative
    variable = vel_y
  [../]
  [./mass]
    type = INSMassRZ
    variable = p
    u = vel_x
    v = vel_y
    p = p
  [../]
  [./x_momentum_space]
    type = INSMomentumLaplaceFormRZ
    variable = vel_x
    u = vel_x
    v = vel_y
    p = p
    component = 0
  [../]
  [./y_momentum_space]
    type = INSMomentumLaplaceFormRZ
    variable = vel_y
    u = vel_x
    v = vel_y
    p = p
    component = 1
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    prop_names = 'rho mu'
    prop_values = '1.1 1.1'
  [../]
[]

[ICs]
  [./vel_x]
    type = RandomIC
    variable = vel_x
    min = 0.1
    max = 0.9
  [../]
  [./vel_y]
    type = RandomIC
    variable = vel_y
    min = 0.1
    max = 0.9
  [../]
  [./p]
    type = RandomIC
    variable = p
    min = 0.1
    max = 0.9
  [../]
[]

[Outputs]
  dofmap = true
[]

modules/tensor_mechanics/test/tests/tensile/small_deform5.i

# checking for small deformation
# A single element is incrementally stretched in the in the z and x directions
# This causes the return direction to be along the hypersurface sigma_I = sigma_II,
# and the resulting stresses are checked to lie on the expected yield surface
#
# tensile_strength is set to 1Pa, tip_smoother = 0.5, edge_smoother = 25degrees
# Then A + B + C = 0.609965


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

  [GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.25E-6*x*t*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0.25E-6*z*t*t'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
  [../]
  [./mc]
    type = TensorMechanicsPlasticTensile
    tensile_strength = ts
    yield_function_tolerance = 1E-6
    tensile_tip_smoother = 0.5
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-5
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform5
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial3_planar.i

# same as uni_axial2 but with planar mohr-coulomb
[Mesh]
  type = FileMesh
  file = quarter_hole.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./zmin_zzero]
    type = DirichletBC
    variable = disp_z
    boundary = 'zmin'
    value = '0'
  [../]
  [./xmin_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = 'xmin'
    value = '0'
  [../]
  [./ymin_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = 'ymin'
    value = '0'
  [../]
  [./ymax_disp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'ymax'
    function = '-1E-4*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0.005 0.02 0.002'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E7
  [../]
  [./fric]
    type = TensorMechanicsHardeningConstant
    value = 40
    convert_to_radians = true
  [../]
  [./dil]
    type = TensorMechanicsHardeningConstant
    value = 40
    convert_to_radians = true
  [../]

  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = coh
    friction_angle = fric
    dilation_angle = dil
    yield_function_tolerance = 1.0 # THIS IS HIGHER THAN THE SMOOTH CASE TO AVOID PRECISION-LOSS PROBLEMS!
    shift =  1.0
    use_custom_returnMap = false
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 1
    fill_method = symmetric_isotropic
    C_ijkl = '0 5E9' # young = 10Gpa, poisson = 0.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 1
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 1
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    max_NR_iterations = 100
    deactivation_scheme = 'safe'
    min_stepsize = 1
    max_stepsize_for_dumb = 1
    debug_fspb = crash
  [../]
[]

# Preconditioning and Executioner options kindly provided by Andrea
[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]


[Executioner]
  end_time = 1.05
  dt = 0.1
  solve_type = NEWTON
  type = Transient
[]


[Outputs]
  file_base = uni_axial3_planar
  [./exodus]
    type = Exodus
    hide = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz yield_fcn s_xx s_xy s_xz s_yy s_yz s_zz f'
  [../]
  [./csv]
    type = CSV
    interval = 1
  [../]
[]

modules/chemical_reactions/test/tests/desorption/mollified_langmuir_jac_ad.i

# testing adsorption jacobian
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[Variables]
  [./pressure]
  [../]
  [./conc]
  [../]
[]

[ICs]
  [./p_ic]
    type = RandomIC
    variable = pressure
    min = 0
    max = 1
  [../]
  [./conc_ic]
    type = RandomIC
    variable = conc
    min = -1
    max = 1
  [../]
[]


[Kernels]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    variable = conc
    pressure_var = pressure
  [../]
  [./flux_to_porespace]
    type = DesorptionToPorespace
    variable = pressure
    conc_var = conc
  [../]
[]

[Materials]
  [./mollified_langmuir_params]
    type = MollifiedLangmuirMaterial
    block = 0
    one_over_desorption_time_const = 0
    one_over_adsorption_time_const = 0.813
    langmuir_density = 6.34
    langmuir_pressure = 1.5
    conc_var = conc
    pressure_var = pressure
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = langmuir_jac1
[]

modules/tensor_mechanics/test/tests/dynamics/acceleration_bc/AccelerationBC_test.i

# Test for  Acceleration boundary condition

# This test contains one brick element which is fixed in the y and z direction.
# Base acceleration is applied in the x direction to all nodes on the bottom surface (y=0).

# The PresetAcceleration converts the given acceleration to a displacement
# using Newmark time integration. This displacement is then prescribed on the boundary.
#
# Result: The acceleration at the bottom node should be same as the input acceleration
# which is a triangular function with peak at t = 0.2 in this case. Width of the triangular function
# is 0.2 s.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./TensorMechanics]
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 0
    index_j = 1
  [../]

[]

[Functions]
  [./acceleration_bottom]
    type = PiecewiseLinear
    data_file = acceleration.csv
    format = columns
  [../]
[]

[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./preset_accelertion]
    type = PresetAcceleration
    boundary = bottom
    function = acceleration_bottom
    variable = disp_x
    beta = 0.25
    acceleration = accel_x
    velocity = vel_x
   [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '210e9 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
  [../]

  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./density]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'
  start_time = 0
  end_time = 2.0
  dt = 0.01
  dtmin = 0.01
  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-8
  l_tol = 1e-8
  timestep_tolerance = 1e-8
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp]
    type = NodalVariableValue
    variable = disp_x
    nodeid = 1
  [../]
  [./vel]
    type = NodalVariableValue
    variable = vel_x
    nodeid = 1
  [../]
  [./accel]
    type = NodalVariableValue
    variable = accel_x
    nodeid = 1
  [../]
[]

[Outputs]
  csv = true
  exodus = true
  perf_graph = true
[]

modules/combined/test/tests/solid_mechanics/Time_integration/HHT_time_integration/sm/HHT_test_sm.i

# Test for  HHT time integration

# The test is for an 1-D bar element of unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# alpha, beta and gamma are HHT time integration parameters The
# equation of motion in terms of matrices is:
#
# M*accel + alpha*(K*disp - K*disp_old) + K*disp = P(t+alpha dt)*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + alpha*(Div stress - Div stress_old) +Div Stress= P(t+alpha dt)
#
# The first term on the left is evaluated using the Inertial force
# kernel The next two terms on the left involving alpha is evaluated
# using the StressDivergence Kernel The residual due to Pressure is
# evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure
# becomes constant.  Alpha equal to zero will result in Newmark
# integration.
[GlobalParams]
  volumetric_locking_correction = false
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
  [../]
  [./stiffness_x]
    type = StressDivergence
    variable = disp_x
    component = 0
    alpha = 0.11
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
  [../]
  [./stiffness_y]
    type = StressDivergence
    variable = disp_y
    component = 1
    alpha = 0.11
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
  [../]
  [./stiffness_z]
    type = StressDivergence
    variable = disp_z
    component = 2
    alpha = 0.11
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
     type = MaterialTensorAux
     variable = stress_yy
     tensor = stress
     index = 1
  [../]
  [./strain_yy]
     type = MaterialTensorAux
     variable = strain_yy
     tensor = total_strain
     index = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
   type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
   type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
   type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
  [./bottom_x]
   type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
    boundary = bottom
    function = pressure
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    factor = 1
    alpha = 0.11
    [../]
  [../]
[]

[Materials]

  [./constant]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    youngs_modulus = 210e+09
    poissons_ratio = 0
    thermal_expansion = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]

  type = Transient
  start_time = 0
  end_time = 2
  dtmax = 0.1
  dtmin = 0.1
  [./TimeStepper]
    type = ConstantDT
    dt = 0.1
  [../]

[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
  [./vel_ic]
    type = PiecewiseLinear
    x = '0.0 0.5 1.0'
    y = '0.1 0.1 0.1'
    scale_factor = 1
  [../]
[]

[Postprocessors]
   [./_dt]
     type = TimestepSize
   [../]
   [./disp]
     type = NodalMaxValue
     variable = disp_y
     boundary = bottom
   [../]
   [./vel]
     type = NodalMaxValue
     variable = vel_y
     boundary = bottom
   [../]
   [./accel]
     type = NodalMaxValue
     variable = accel_y
     boundary = bottom
   [../]
   [./stress_yy]
      type = ElementAverageValue
      variable = stress_yy
   [../]
   [./strain_yy]
      type = ElementAverageValue
      variable = strain_yy
   [../]

[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto01.i

# checking jacobian for a fully-elastic situation
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
    min = -0.1
    max = 0.1
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
    min = -0.1
    max = 0.1
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
    min = -0.1
    max = 0.1
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '1 2'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '1 2 3  2 -4 -5  3 -5 2'
    eigenstrain_name = ini_stress
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-5
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/phase_field/examples/rigidbodymotion/grain_forcedensity_ext.i

# example showing grain motion due to applied force density on grains
[GlobalParams]
  var_name_base = eta
  op_num = 2
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 20
  nz = 0
  xmin = 0.0
  xmax = 40.0
  ymin = 0.0
  ymax = 20.0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SpecifiedSmoothCircleIC
      invalue = 1.0
      outvalue = 0.0
      int_width = 6.0
      x_positions = '20.0 30.0 '
      z_positions = '0.0 0.0 '
      y_positions = '0.0 25.0 '
      radii = '14.0 14.0'
      3D_spheres = false
      variable = c
    [../]
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./load]
    type = ConstantFunction
    value = -0.01
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = 'eta0 eta1'
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '1.0  2.0      0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = c
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
    derivative_order = 2
  [../]
  [./force_density]
    type = ExternalForceDensityMaterial
    c = c
    etas = 'eta0 eta1'
    k = 1.0
    force_y = load
  [../]
[]

[AuxVariables]
  [./eta0]
  [../]
  [./eta1]
  [../]
  [./bnds]
  [../]
  [./df00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df01]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df10]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./df11]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    var_name_base = eta
    op_num = 2
    v = 'eta0 eta1'
  [../]
  [./df01]
    type = MaterialStdVectorRealGradientAux
    variable = df01
    component = 1
    property = force_density_ext
  [../]
  [./df11]
    type = MaterialStdVectorRealGradientAux
    variable = df11
    index = 1
    component = 1
    property = force_density_ext
  [../]
  [./df00]
    type = MaterialStdVectorRealGradientAux
    variable = df00
    property = force_density_ext
  [../]
  [./df10]
    type = MaterialStdVectorRealGradientAux
    variable = df10
    index = 1
    property = force_density_ext
  [../]
[]

[ICs]
  [./ic_eta0]
    int_width = 6.0
    x1 = 20.0
    y1 = 0.0
    radius = 14.0
    outvalue = 0.0
    variable = eta0
    invalue = 1.0
    type = SmoothCircleIC
  [../]
  [./IC_eta1]
    int_width = 6.0
    x1 = 30.0
    y1 = 25.0
    radius = 14.0
    outvalue = 0.0
    variable = eta1
    invalue = 1.0
    type = SmoothCircleIC
  [../]
[]

[VectorPostprocessors]
  [./forces]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force]
    type = ComputeExternalGrainForceAndTorque
    c = c
    etas = 'eta0 eta1'
    grain_data = grain_center
    force_density = force_density_ext
    execute_on = 'initial linear nonlinear'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 5
  dt = 0.1
  [./Adaptivity]
    refine_fraction = 0.7
    coarsen_fraction = 0.1
    max_h_level = 2
    initial_adaptivity = 1
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/inclined_bc/inclined_bc_2d.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 8
    xmin = 0.0
    xmax = 1.0
    ymin = 0.0
    ymax = 2.0
    elem_type = QUAD4
  []
  [rotate]
    type = TransformGenerator
    transform = ROTATE
    vector_value = '0 0 -60'
    input = generated_mesh
  []
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  add_variables = true
[]

[BCs]
  [./Pressure]
    [./top]
      boundary = top
      function = '-1000*t'
    [../]
  [../]
  [./InclinedNoDisplacementBC]
    [./right]
      boundary = right
      penalty = 1.0e8
      displacements = 'disp_x disp_y'
    [../]
    [./bottom]
      boundary = bottom
      penalty = 1.0e8
      displacements = 'disp_x disp_y'
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  # controls for linear iterations
  l_max_its = 10
  l_tol = 1e-4

  # controls for nonlinear iterations
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8

  # time control
  start_time = 0.0
  dt = 1
  end_time = 5
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/small_deform2.i

# apply a pure tension, then some shear with compression
# the BCs are designed to map out the yield function, showing
# the affect of the small_smoother parameter
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = x_disp
    boundary = front
    function = 'if(t<1E-6,0,3*t)'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = y_disp
    boundary = front
    function = 'if(t<1E-6,0,5*(t-0.01E-6))'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = front
    function = 'if(t<1E-6,t,2E-6-t)'
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E3
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.01745506
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 500
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 0.5E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-4
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 2E-6
  dt = 1E-7
  type = Transient
[]


[Outputs]
  file_base = small_deform2
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/shell/static/large_strain_m_40_AD.i

# Large strain/rotation test for shell elements

# A cantilever beam that is 40 m long (Y direction) with 1 m x 1 m
# cross-section is modeled using 5 shell elements placed along its
# length. The bottom boundary is fixed in all displacements and
# rotations. A load of 0.140625 N is applied at each node on the top
# boundary, resulting in a total load of 0.28125 N. E = 1800 Pa and
# v = 0.0.

# The reference solution for large deflection of this beam is based on
# K. E. Bisshopp and D.C. Drucker, Quaterly of Applied Mathematics,
# Vol 3, No. # 3, 1945.

# For PL^2/EI = 3, disp_z at tip = 0.6L = 24 m & disp_y at tip = 0.76*L-L = -9.6 m

# The FEM solution at tip of cantilever is:
# disp_z = 24.85069 m; relative error = 3.54 %
# disp_y = -9.125937 m; relative error = 5.19 %

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 40.0
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = bottom
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = bottom
    value = 0.0
  [../]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_z
    boundary = top
    function = force_y
  [../]
[]

[Functions]
  [./force_y]
    type = PiecewiseLinear
    x = '0.0 1.0 3.0'
    y = '0.0 1.0 1.0'
    scale_factor = 0.140625
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8

  dt = 0.1
  dtmin = 0.1
  end_time = 3.0
[]

[Kernels]
  [./solid_disp_x]
    type = ADStressDivergenceShell
    block = '0'
    component = 0
    variable = disp_x
    through_thickness_order = SECOND
    large_strain = true
  [../]
  [./solid_disp_y]
    type = ADStressDivergenceShell
    block = '0'
    component = 1
    variable = disp_y
    through_thickness_order = SECOND
    large_strain = true
  [../]
  [./solid_disp_z]
    type = ADStressDivergenceShell
    block = '0'
    component = 2
    variable = disp_z
    through_thickness_order = SECOND
    large_strain = true
  [../]
  [./solid_rot_x]
    type = ADStressDivergenceShell
    block = '0'
    component = 3
    variable = rot_x
    through_thickness_order = SECOND
    large_strain = true
  [../]
  [./solid_rot_y]
    type = ADStressDivergenceShell
    block = '0'
    component = 4
    variable = rot_y
    through_thickness_order = SECOND
    large_strain = true
  [../]
[]

[Materials]
  [./elasticity]
    type = ADComputeIsotropicElasticityTensorShell
    youngs_modulus = 1800
    poissons_ratio = 0.0
    block = 0
    through_thickness_order = SECOND
  [../]
  [./strain]
    type = ADComputeFiniteShellStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y'
    thickness = 1.0
    through_thickness_order = SECOND
  [../]
  [./stress]
    type = ADComputeShellStress
    block = 0
    through_thickness_order = SECOND
  [../]
[]

[Postprocessors]
  [./disp_z2]
    type = PointValue
    point = '1.0 40.0 0.0'
    variable = disp_z
  [../]
  [./disp_y2]
    type = PointValue
    point = '1.0 40.0 0.0'
    variable = disp_y
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto21.i

# DruckerPragerHyperbolic

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningCubic
    value_0 = 10
    value_residual = 1
    internal_limit = 100
  [../]
  [./phi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.8
    value_residual = 0.4
    internal_limit = 50
  [../]
  [./psi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.4
    value_residual = 0
    internal_limit = 10
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    smoother = 1
    yield_function_tolerance = 1E-11
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6 5 4  5 7 2  4 2 2'
    eigenstrain_name = ini_stress
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-11
    plastic_models = dp
    tangent_operator = nonlinear
    min_stepsize = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/porous_flow/test/tests/gravity/grav01d.i

# Test illustrating that PorousFlow allows block-restricted relative permeabilities and capillarities
# and automatically adds appropriate Joiners.
# Physically, this test is checking that gravity head is established
# for 1phase, vanGenuchten, constant fluid-bulk, constant viscosity, constant permeability, Corey relative perm
# For better agreement with the analytical solution (ana_pp), just increase nx

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 1
    nx = 100
    xmin = -1
    xmax = 0
  []
  [./define_block1]
    input = gen
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '-1 -1 -1'
    top_right = '-0.5 1 1'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    [./InitialCondition]
      type = RandomIC
      min = -1
      max = 1
    [../]
  [../]
[]

[Kernels]
  [./dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pp
    gravity = '-1 0 0'
  [../]
[]

[Functions]
  [./ana_pp]
    type = ParsedFunction
    vars = 'g B p0 rho0'
    vals = '1 2 -1 1'
    value = '-B*log(exp(-p0/B)+g*rho0*x/B)' # expected pp at base
  [../]
[]

[BCs]
  [./z]
    type = DirichletBC
    variable = pp
    boundary = right
    value = -1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc_0]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
  [./pc_1]
    type = PorousFlowCapillaryPressureVG
    m = 0.6
    alpha = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2
      density0 = 1
      viscosity = 1
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss_0]
    type = PorousFlow1PhaseP
    block = 0
    porepressure = pp
    capillary_pressure = pc_0
  [../]
  [./ppss_1]
    type = PorousFlow1PhaseP
    block = 1
    porepressure = pp
    capillary_pressure = pc_1
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0  0 2 0  0 0 3'
  [../]
  [./relperm_0]
    type = PorousFlowRelativePermeabilityCorey
    block = 0
    n = 1
    phase = 0
  [../]
  [./relperm_1]
    type = PorousFlowRelativePermeabilityCorey
    block = 1
    n = 2
    phase = 0
  [../]
[]

[Postprocessors]
  [./pp_base]
    type = PointValue
    variable = pp
    point = '-1 0 0'
  [../]
  [./pp_analytical]
    type = FunctionValuePostprocessor
    function = ana_pp
    point = '-1 0 0'
  [../]
[]

[Preconditioning]
  active = andy
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E6
  end_time = 1E6
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = grav01d
  csv = true
[]

test/tests/transfers/multiapp_userobject_transfer/master.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 20
  ny = 20
  nz = 20
  # The MultiAppUserObjectTransfer object only works with ReplicatedMesh
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./multi_layered_average]
  [../]
  [./element_multi_layered_average]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.001 # This will be constrained by the multiapp

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  l_tol = 1e-8
  nl_rel_tol = 1e-10
[]


[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    positions = '0.3 0.1 0.3 0.7 0.1 0.3'
    type = TransientMultiApp
    input_files = sub.i
    app_type = MooseTestApp
  [../]
[]

[Transfers]
  [./layered_transfer]
    direction = from_multiapp
    user_object = layered_average
    variable = multi_layered_average
    type = MultiAppUserObjectTransfer
    multi_app = sub_app
  [../]
  [./element_layered_transfer]
    direction = from_multiapp
    user_object = layered_average
    variable = element_multi_layered_average
    type = MultiAppUserObjectTransfer
    multi_app = sub_app
  [../]
[]

test/tests/time_steppers/iteration_adaptive/adapt_tstep_grow_dtfunc.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmax = 5
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    preset = false
    boundary = left
    value = 10
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = -1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  start_time = 0.0
  end_time = 5.0
  [TimeStepper]
    type = IterationAdaptiveDT
    dt = 1.0
    optimal_iterations = 10
    time_t = '0.0 5.0'
    time_dt = '1.0 5.0'
  []
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  checkpoint = true
[]

modules/tensor_mechanics/test/tests/jacobian/tensile_update1.i

# Tensile, update version, with strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Return to the stress_I = 1 plane

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 0 0  0 0 0  0 0 -2'
    eigenstrain_name = ini_stress
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/transfers/multiapp_nearest_node_transfer/two_way_many_apps_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 0.2
  ymax = 0.2
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_master]
  [../]
  [./elemental_from_master]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/ics/from_exodus_solution/elem_part1.i

# We run a simple problem (5 time steps and save off the solution)
# In part2, we load the solution and solve a steady problem. The test check, that the initial state in part 2 is the same as the last state from part1

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 20
  ny = 20
[]

[Functions]
  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = -4+(x*x+y*y)
  [../]
[]

[AuxVariables]
  [./e]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./ak]
    type = FunctionAux
    variable = e
    function = exact_fn
  [../]
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'ie diff ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.2
  start_time = 0
  num_steps = 5
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/solid_mechanics_basic/sm/penny_crack.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  file = quarter_sym.e
  displacements = 'disp_x disp_y disp_z'
[]

[UserObjects]
  [./circle_cut_uo]
    type = CircleCutUserObject
    cut_data = '-0.5 -0.5 0
                0.0 -0.5 0
                -0.5 0 0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
   order = CONSTANT
    family = MONOMIAL
  [../]
[]

[DomainIntegral]
  integrals = 'Jintegral'
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  crack_front_points = '-0.5 0.0 0.0
                        -0.25 -0.07 0
                        -0.15 -0.15 0
                        -0.07 -0.25 0
                         0 -0.5 0'
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0 1 0'
  crack_direction_vector_end_2 = '1 0 0'
  crack_direction_method = CurvedCrackFront
  intersecting_boundary = '3 4' #It would be ideal to use this, but can't use with XFEM yet
  radius_inner = '0.3'
  radius_outer = '0.6'
  poissons_ratio = 0.3
  youngs_modulus = 207000
  block = 1
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
    block = 1
  [../]
[]

[Functions]
  [./top_trac_z]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_z]
    type = FunctionNeumannBC
    boundary = 2
    variable = disp_z
    function = top_trac_z
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = 1
    variable = disp_z
    value = 0.0
  [../]
  [./sym_y]
    type = DirichletBC
    boundary = 3
    variable = disp_y
    value = 0.0
  [../]
  [./sym_x]
    type = DirichletBC
    boundary = 4
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 207000
    compute_JIntegral = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = penny_crack_out
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/porous_flow/test/tests/dirackernels/bh_except13.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    point_file = coincident_points.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

modules/combined/test/tests/incremental_slip/incremental_slip.i


[Mesh]
  file = incremental_slip.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
  [../]
[]

[Functions]
  [./slave_x]
    type = PiecewiseLinear
    x = '0 1 2   3 4 5  6    7 8   9'
    y = '0 0 0.5 0 0 0 -0.25 0 0.5 0'
  [../]
  [./slave_y]
    type = PiecewiseLinear
    x = '0  1     9'
    y = '0 -0.15 -0.15'
  [../]
  [./slave_z]
    type = PiecewiseLinear
    x = '0 1  2   3 4 5 6    7  8   9'
    y = '0 0 -0.5 0 0 0 0.25 0 -0.5 0'
  [../]

  [./master_x]
    type = PiecewiseLinear
    x = '0 1  2 3 4   5 6    7 8   9'
    y = '0 0  0 0 0.5 0 0.25 0 0.5 0'
  [../]
  [./master_y]
    type = PiecewiseLinear
    x = '0 9'
    y = '0 0'
  [../]
  [./master_z]
    type = PiecewiseLinear
    x = '0 1  2 3 4   5  6    7  8   9'
    y = '0 0  0 0 0.5 0 -0.25 0 -0.5 0'
  [../]
[]

[AuxVariables]
  [./inc_slip_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./inc_slip_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./inc_slip_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_z]
    type = PenetrationAux
    variable = inc_slip_z
    quantity = incremental_slip_z
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Contact]
  [./dummy_name]
    master = 2
    slave = 3
    penalty = 1e7
    system = Constraint
  [../]
[]

[BCs]
  [./slave_x]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = 4
    function = slave_x
  [../]
  [./slave_y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 4
    function = slave_y
  [../]
  [./slave_z]
    type = FunctionDirichletBC
    variable = disp_z
    preset = false
    boundary = 4
    function = slave_z
  [../]

  [./master_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '1 2'
    function = master_x
  [../]
  [./master_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = '1 2'
    function = master_y
  [../]
  [./master_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = '1 2'
    function = master_z
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor_1]
    type = ComputeIsotropicElasticityTensor
    block = 1
    youngs_modulus = 1.0e6
    poissons_ratio = 0.0
  [../]
  [./stress_1]
    type = ComputeFiniteStrainElasticStress
    block = 1
  [../]

  [./elasticity_tensor_2]
    type = ComputeIsotropicElasticityTensor
    block = 2
    youngs_modulus = 1.0e6
    poissons_ratio = 0.0
  [../]
  [./stress_2]
    type = ComputeFiniteStrainElasticStress
    block = 2
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu            superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-8
  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 9
[] # Executioner

[Outputs]
  exodus = true
[]

test/tests/outputs/console/moose_console.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = ConsoleMessageKernel
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  interval = 2
[]

modules/tensor_mechanics/test/tests/multi/three_surface01.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 0E-6m in y direction and 1.5E-6 in z direction.
# trial stress_yy = 0 and stress_zz = 1.5
#
# Then SimpleTester0 should activate and the algorithm will return to
# stress_yy = 0, stress_zz = 1
# internal0 should be 0.5, and others zero

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.5E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface01
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/xfem/test/tests/single_var_constraint_2d/stationary_fluxjump_func.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.0'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0
    jump_flux = jump_flux_func
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
[]

[Functions]
  [./jump_flux_func]
    type = ParsedFunction
    value = '1'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/combined/test/tests/sliding_block/in_and_out/dirac/sm/frictionless_penalty_sm.i

#  This is a benchmark test that checks Dirac based frictionless
#  contact using the penalty method.  In this test a sinusoidal
#  displacement is applied in the horizontal direction to simulate
#  a small block come in and out of contact as it slides down a larger block.
#
#  The sinusoid is of the form 0.4sin(4t)+0.2. The gold file is run
#  on one processor and the benchmark
#  case is run on a minimum of 4 processors to ensure no parallel variability
#  in the contact pressure and penetration results.  Further documentation can
#  found in moose/modules/contact/doc/sliding_block/
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]


[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  nl_rel_tol = 1e-6
  dtmin = 0.01
  l_tol = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    normal_smoothing_distance = 0.1
    system = DiracKernel
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_4/ring4_template1.i

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = ring4_mesh.e
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeAxisymmetricRZIncrementalStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/porous_flow/test/tests/plastic_heating/compressive01.i

# Tensile heating, using capped weak-plane plasticity
# z_disp(z=1) = -t
# totalstrain_zz = -t
# with C_ijkl = 0.5 0.25
# stress_zz = -t, but with compressive_strength = 1, stress_zz = max(-t, -1)
# so plasticstrain_zz = -(t - 1)
# heat_energy_rate = coeff * (t - 1)
# Heat capacity of rock = specific_heat_cap * density = 4
# So temperature of rock should be:
# (1 - porosity) * 4 * T = (1 - porosity) * coeff * (t - 1)
[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = -10
  xmax = 10
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
[]

[Variables]
  [./temperature]
  [../]
[]

[Kernels]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    variable = temperature
  [../]
  [./phe]
    type = PorousFlowPlasticHeatEnergy
    variable = temperature
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxKernels]
  [./disp_z]
    type = FunctionAux
    variable = disp_z
    function = '-z*t'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = temperature
    number_fluid_phases = 0
    number_fluid_components = 0
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 100
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 1.0
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
[]

[Materials]
  [./rock_internal_energy]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 2
    density = 2
  [../]
  [./temp]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./phe]
    type = ComputePlasticHeatEnergy
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0.5 0.25'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanphi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-10
    perfect_guess = true
  [../]
[]

[Postprocessors]
  [./temp]
    type = PointValue
    point = '0 0 0'
    variable = temperature
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 10
[]

[Outputs]
  file_base = compressive01
  csv = true
[]

modules/tensor_mechanics/test/tests/1D_axisymmetric/axisymmetric_gps_small.i

#
# This test checks the generalized plane strain using small strain formulation.
# The model consists of two sets of line elements. One undergoes a temperature rise of 100 with
# the other seeing a temperature rise of 300.  Young's modulus is 3600, and
# Poisson's ratio is 0.2.  The thermal expansion coefficient is 1e-8.  All
# nodes are constrained against movement.
#
# For plane strain case, i.e., without constraining the strain_yy to be uniform,
# the stress solution would be [-6e-3, -6e-3, -6e-3] and [-18e-3, -18e-3, -18e-3] (xx, yy, zz).
# The generalized plane strain kernels work to balance the force in y direction.
#
# With out of plane strain of 3e-6, the stress solution becomes
# [-3e-3, 6e-3, -3e-3] and [-15e-3, -6e-3, -15e-3] (xx, yy, zz).  This gives
# a domain integral of out-of-plane stress to be zero.
#

[GlobalParams]
  displacements = disp_x
  scalar_out_of_plane_strain = scalar_strain_yy
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = lines.e
[]

[Variables]
  [./disp_x]
  [../]
  [./temp]
    initial_condition = 580.0
  [../]
  [./scalar_strain_yy]
    order = FIRST
    family = SCALAR
  [../]
[]

[Functions]
  [./temp100]
    type = PiecewiseLinear
    x = '0   1'
    y = '580 680'
  [../]
  [./temp300]
    type = PiecewiseLinear
    x = '0   1'
    y = '580 880'
  [../]
[]

[Kernels]
  [./heat]
    type = Diffusion
    variable = temp
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./gps]
        planar_formulation = GENERALIZED_PLANE_STRAIN
        scalar_out_of_plane_strain = scalar_strain_yy
        strain = SMALL
        generate_output = 'strain_xx strain_yy strain_zz stress_xx stress_yy stress_zz'
        eigenstrain_names = eigenstrain
      [../]
    [../]
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    boundary = 1000
    value = 0
    variable = disp_x
  [../]
  [./temp100]
    type = FunctionDirichletBC
    variable = temp
    function = temp100
    boundary = 2
  [../]
  [./temp300]
    type = FunctionDirichletBC
    variable = temp
    function = temp300
    boundary = 3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 3600
    poissons_ratio = 0.2
  [../]

  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-8
    temperature = temp
    stress_free_temperature = 580
    eigenstrain_name = eigenstrain
  [../]

  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_max_its = 50
  l_tol = 1e-08
  nl_max_its = 15
  nl_abs_tol = 1e-10
  start_time = 0
  end_time = 1
  num_steps = 1
[]

[Outputs]
  exodus = true
  console = true
[]

test/tests/meshgenerators/block_deletion_generator/block_deletion_test1.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
    xmin = 0
    xmax = 4
    ymin = 0
    ymax = 4
  []

  [./SubdomainBoundingBox]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '3 3 3'
  [../]

  [./ed0]
    type = BlockDeletionGenerator
    input = SubdomainBoundingBox
    block_id = 1
  [../]

[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/gravity_head_1/gh_fu_10.i

# unsaturated = true
# gravity = false
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = -1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
  density_UO = DensityConstBulk
  relperm_UO = RelPermPower
  SUPG_UO = SUPGnone
  sat_UO = Saturation
  seff_UO = SeffVG
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFullyUpwindFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh_fu_10
  exodus = true
[]

test/tests/multiapps/move/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/material_limit_time_step/elas_plas/nafems_nl1_lim_no_comb.i

#
# Tests material model IsotropicPlasticity with material based time stepper
# Boundary conditions from NAFEMS test NL1
#
[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
[]

[Mesh]#Comment
  file = one_elem2.e
  displacements = 'disp_x disp_y'
[] # Mesh

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[] # Variables

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_eff]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[] # AuxVariables

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]
  [./plastic_strain_eff]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = plastic_strain_eff
  [../]
  [./tot_strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = tot_strain_yy
    index = 1
  [../]
[] # AuxKernels

[Functions]
  [./appl_dispx]
    type = PiecewiseLinear
    x = '0   1.0   2.0   3.0  4.0   5.0  6.0  7.0  8.0'
    y = '0.0 0.25e-4 0.50e-4 0.50e-4 0.50e-4 0.25e-4 0.0 0.0 0.0'
  [../]
  [./appl_dispy]
    type = PiecewiseLinear
    x = '0   1.0   2.0   3.0  4.0   5.0  6.0  7.0  8.0'
    y = '0.0 0.0  0.0 0.25e-4 0.50e-4 0.50e-4 0.50e-4  0.25e-4 0.0 '
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 101
    value = 0.0
  [../]
  [./origin_x]
    type = DirichletBC
    variable = disp_x
    boundary = 103
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 102
    value = 0.0
  [../]
  [./origin_y]
    type = DirichletBC
    variable = disp_y
    boundary = 103
    value = 0.0
  [../]
  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = appl_dispy
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = appl_dispx
  [../]
[] # BCs

[Materials]
  [./stiffStuff1]
    type = SolidModel
    block = 1
    youngs_modulus = 250e9
    poissons_ratio = 0.25
    constitutive_model = isoplas
    formulation = NonlinearPlaneStrain
    large_strain = true
  [../]
  [./isoplas]
    type = IsotropicPlasticity
    block = 1
    yield_stress = 5e6
    hardening_constant = 0.0
    relative_tolerance = 1e-20
    absolute_tolerance = 1e-8
    max_inelastic_increment = 0.000001
    compute_material_timestep_limit = true
  [../]
[] # Materials

[Executioner]
  type = Transient
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 20

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.1
    time_t = '1.0  2.0  3.0  4.0  5.0  6.0  7.0  8.0'
    time_dt = '0.1 0.1  0.1  0.1  0.1  0.1  0.1  0.1'
    optimal_iterations = 30
    iteration_window = 9
    growth_factor = 2.0
    cutback_factor = 0.5
    timestep_limiting_postprocessor = matl_ts_min
  [../]

  start_time = 0.0
  num_steps = 1000
  end_time = 8.0
[] # Executioner

[Postprocessors]
  [./matl_ts_min]
    type = MaterialTimeStepPostprocessor
  [../]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./el_strain_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./plas_strain_eff]
    type = ElementAverageValue
    variable = plastic_strain_eff
  [../]
  [./tot_strain_yy]
    type = ElementAverageValue
    variable = tot_strain_yy
  [../]
  [./disp_x1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_x
  [../]
  [./disp_x4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_x
  [../]
  [./disp_y1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  [./console]
    type = Console
    output_linear = true
  [../]
[] # Outputs

modules/navier_stokes/test/tests/ins/mms/supg/supg_adv_dominated_mms.i

mu=1.5e-2
rho=2.5

[GlobalParams]
  gravity = '0 0 0'
  supg = true
  convective_term = true
  integrate_p_by_parts = false
  transient_term = true
  laplace = true
  u = vel_x
  v = vel_y
  p = p
  alpha = 1e0
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 1.0
    ymin = 0
    ymax = 1.0
    elem_type = QUAD9
    nx = 4
    ny = 4
  []
  [./corner_node]
    type = ExtraNodesetGenerator
    new_boundary = 'pinned_node'
    nodes = '0'
    input = gen
  [../]
[]

[Variables]
  [./vel_x]
  [../]

  [./vel_y]
  [../]

  [./p]
    order = FIRST
  [../]
[]

[Kernels]
  # mass
  [./mass]
    type = INSMass
    variable = p
  [../]

  [./x_time]
    type = INSMomentumTimeDerivative
    variable = vel_x
  [../]
  [./y_time]
    type = INSMomentumTimeDerivative
    variable = vel_y
  [../]

  # x-momentum, space
  [./x_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_x
    component = 0
    forcing_func = vel_x_source_func
  [../]

  # y-momentum, space
  [./y_momentum_space]
    type = INSMomentumLaplaceForm
    variable = vel_y
    component = 1
    forcing_func = vel_y_source_func
  [../]

  [./p_source]
    type = BodyForce
    function = p_source_func
    variable = p
  [../]
[]

[BCs]
  [./vel_x]
    type = FunctionDirichletBC
    boundary = 'left right top bottom'
    function = vel_x_func
    variable = vel_x
  [../]
  [./vel_y]
    type = FunctionDirichletBC
    boundary = 'left right top bottom'
    function = vel_y_func
    variable = vel_y
  [../]
  [./p]
    type = FunctionDirichletBC
    boundary = 'left right top bottom'
    function = p_func
    variable = p
  [../]
[]

[Functions]
  [./vel_x_source_func]
    type = ParsedFunction
    value = '-${mu}*(-0.028*pi^2*x^2*sin(0.2*pi*x*y) - 0.028*pi^2*y^2*sin(0.2*pi*x*y) - 0.1*pi^2*sin(0.5*pi*x) - 0.4*pi^2*sin(pi*y)) + ${rho}*(0.14*pi*x*cos(0.2*pi*x*y) + 0.4*pi*cos(pi*y))*(0.6*sin(0.8*pi*x) + 0.3*sin(0.3*pi*y) + 0.2*sin(0.3*pi*x*y) + 0.3) + ${rho}*(0.14*pi*y*cos(0.2*pi*x*y) + 0.2*pi*cos(0.5*pi*x))*(0.4*sin(0.5*pi*x) + 0.4*sin(pi*y) + 0.7*sin(0.2*pi*x*y) + 0.5) + 0.1*pi*y*cos(0.2*pi*x*y) + 0.25*pi*cos(0.5*pi*x)'
  [../]
  [./vel_y_source_func]
    type = ParsedFunction
    value = '-${mu}*(-0.018*pi^2*x^2*sin(0.3*pi*x*y) - 0.018*pi^2*y^2*sin(0.3*pi*x*y) - 0.384*pi^2*sin(0.8*pi*x) - 0.027*pi^2*sin(0.3*pi*y)) + ${rho}*(0.06*pi*x*cos(0.3*pi*x*y) + 0.09*pi*cos(0.3*pi*y))*(0.6*sin(0.8*pi*x) + 0.3*sin(0.3*pi*y) + 0.2*sin(0.3*pi*x*y) + 0.3) + ${rho}*(0.06*pi*y*cos(0.3*pi*x*y) + 0.48*pi*cos(0.8*pi*x))*(0.4*sin(0.5*pi*x) + 0.4*sin(pi*y) + 0.7*sin(0.2*pi*x*y) + 0.5) + 0.1*pi*x*cos(0.2*pi*x*y) + 0.3*pi*cos(0.3*pi*y)'
  [../]
  [./p_source_func]
    type = ParsedFunction
    value = '-0.06*pi*x*cos(0.3*pi*x*y) - 0.14*pi*y*cos(0.2*pi*x*y) - 0.2*pi*cos(0.5*pi*x) - 0.09*pi*cos(0.3*pi*y)'
  [../]
  [./vel_x_func]
    type = ParsedFunction
    value = '0.4*sin(0.5*pi*x) + 0.4*sin(pi*y) + 0.7*sin(0.2*pi*x*y) + 0.5'
  [../]
  [./vel_y_func]
    type = ParsedFunction
    value = '0.6*sin(0.8*pi*x) + 0.3*sin(0.3*pi*y) + 0.2*sin(0.3*pi*x*y) + 0.3'
  [../]
  [./p_func]
    type = ParsedFunction
    value = '0.5*sin(0.5*pi*x) + 1.0*sin(0.3*pi*y) + 0.5*sin(0.2*pi*x*y) + 0.5'
  [../]
  [./vxx_func]
    type = ParsedFunction
    value = '0.14*pi*y*cos(0.2*pi*x*y) + 0.2*pi*cos(0.5*pi*x)'
  [../]
[]

[Materials]
  [./const]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'rho mu'
    prop_values = '${rho}  ${mu}'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    solve_type = 'NEWTON'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -pc_factor_shift_type'
  petsc_options_value = 'lu NONZERO'
  line_search = 'none'
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-14
  nl_max_its = 10
  l_tol = 1e-6
  l_max_its = 10
  [./TimeStepper]
    dt = .05
    type = IterationAdaptiveDT
    cutback_factor = 0.4
    growth_factor = 1.2
    optimal_iterations = 20
  [../]
[]

[Outputs]
  execute_on = 'final'
  [./exodus]
    type = Exodus
  [../]
  [./csv]
    type = CSV
  [../]
[]

[Postprocessors]
  [./L2vel_x]
    type = ElementL2Error
    variable = vel_x
    function = vel_x_func
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
  [./L2vel_y]
    variable = vel_y
    function = vel_y_func
    type = ElementL2Error
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
  [./L2p]
    variable = p
    function = p_func
    type = ElementL2Error
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
  [./L2vxx]
    variable = vxx
    function = vxx_func
    type = ElementL2Error
    outputs = 'console csv'
    execute_on = 'timestep_end'
  [../]
[]

[AuxVariables]
  [./vxx]
    family = MONOMIAL
    order = FIRST
  [../]
[]

[AuxKernels]
  [./vxx]
    type = VariableGradientComponent
    component = x
    variable = vxx
    gradient_variable = vel_x
  [../]
[]

modules/level_set/examples/vortex/vortex_reinit.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmax = 1
  ymax = 1
  nx = 16
  ny = 16
  uniform_refine = 2
  elem_type = QUAD9
  second_order = true
[]

[AuxVariables]
  [vel_x]
    family = LAGRANGE
  []
  [vel_y]
    family = LAGRANGE
  []
[]

[AuxKernels]
  [vel_x]
    type = FunctionAux
    function = vel_x
    variable = vel_x
    execute_on = 'initial timestep_begin'
  []
  [vel_y]
    type = FunctionAux
    function = vel_y
    variable = vel_y
    execute_on = 'initial timestep_begin'
  []
[]

[Variables]
  [phi]
    family = LAGRANGE
  []
[]

[Functions]
  [phi_exact]
    type = LevelSetOlssonBubble
    epsilon = 0.03
    center = '0.5 0.75 0'
    radius = 0.15
  []
  [vel_x]
    type = LevelSetOlssonVortex
    component = x
    reverse_time = 2
  []
  [vel_y]
    type = LevelSetOlssonVortex
    component = y
    reverse_time = 2
  []
[]

[ICs]
  [phi_ic]
    type = FunctionIC
    function = phi_exact
    variable = phi
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = phi
  []
  [advection]
    type = LevelSetAdvection
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  []
  [advection_supg]
    type = LevelSetAdvectionSUPG
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  []
  [time_supg]
    type = LevelSetTimeDerivativeSUPG
    velocity_x = vel_x
    velocity_y = vel_y
    variable = phi
  []
[]

[Postprocessors]
  [area]
    type = LevelSetVolume
    threshold = 0.5
    variable = phi
    location = outside
    execute_on = 'initial timestep_end'
  []
  [cfl]
    type = LevelSetCFLCondition
    velocity_x = vel_x
    velocity_y = vel_y
    execute_on = 'initial timestep_end'
  []
[]

[Problem]
  type = LevelSetProblem
[]

[Preconditioning/smp]
    type = SMP
    full = true
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  start_time = 0
  end_time = 2
  scheme = crank-nicolson
  [TimeStepper]
    type = PostprocessorDT
    postprocessor = cfl
    scale = 0.8
  []
[]

[MultiApps]
  [reinit]
    type = LevelSetReinitializationMultiApp
    input_files = 'vortex_reinit_sub.i'
    execute_on = TIMESTEP_END
  []
[]

[Transfers]
  [to_sub]
    type = MultiAppCopyTransfer
    source_variable = phi
    variable = phi
    direction = to_multiapp
    multi_app = reinit
    execute_on = 'timestep_end'
  []

  [to_sub_init]
    type = MultiAppCopyTransfer
    source_variable = phi
    variable = phi_0
    direction = to_multiapp
    multi_app = reinit
    execute_on = 'timestep_end'
  []

  [from_sub]
    type = MultiAppCopyTransfer
    source_variable = phi
    variable = phi
    direction = from_multiapp
    multi_app = reinit
    execute_on = 'timestep_end'
  []
[]

[Outputs]
  csv = true
  exodus = true
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_2phase.i

# Pressure pulse in 1D with 2 phases (with one having zero saturation), 2components - transient
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
    initial_condition = 2E6
  [../]
  [./ppgas]
    initial_condition = 2E6
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    variable = ppwater
    gravity = '0 0 0'
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = ppgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    variable = ppgas
    gravity = '0 0 0'
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 2e6
      density0 = 1
      thermal_expansion = 0
      viscosity = 1e-5
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-15 0 0 0 1E-15 0 0 0 1E-15'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 1
  [../]
[]

[BCs]
  [./leftwater]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = ppwater
  [../]
  [./leftgas]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = ppgas
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-15       1E-20 20'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[Postprocessors]
  [./p000]
    type = PointValue
    variable = ppwater
    point = '0 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p010]
    type = PointValue
    variable = ppwater
    point = '10 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p020]
    type = PointValue
    variable = ppwater
    point = '20 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p030]
    type = PointValue
    variable = ppwater
    point = '30 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p040]
    type = PointValue
    variable = ppwater
    point = '40 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p050]
    type = PointValue
    variable = ppwater
    point = '50 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p060]
    type = PointValue
    variable = ppwater
    point = '60 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p070]
    type = PointValue
    variable = ppwater
    point = '70 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p080]
    type = PointValue
    variable = ppwater
    point = '80 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p090]
    type = PointValue
    variable = ppwater
    point = '90 0 0'
    execute_on = 'initial timestep_end'
  [../]
  [./p100]
    type = PointValue
    variable = ppwater
    point = '100 0 0'
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  file_base = pressure_pulse_1d_2phase
  print_linear_residuals = false
  csv = true
[]

modules/combined/test/tests/ad_cavity_pressure/rz.i

#
# Cavity Pressure Test
#
# This test is designed to compute an internal pressure based on
#   p = n * R * T / V
# where
#   p is the pressure
#   n is the amount of material in the volume (moles)
#   R is the universal gas constant
#   T is the temperature
#   V is the volume
#
# The mesh is composed of one block (2) with an interior cavity of volume 8.
#   Block 1 sits in the cavity and has a volume of 1.  Thus, the total
#   initial volume is 7.
# The test adjusts T in the following way:
#   T => T0 + beta * t
# with
#   beta = T0
#   T0 = 240.54443866068704
#   V0 = 7
#   n0 = f(p0)
#   p0 = 100
#   R = 8.314472 J * K^(-1) * mol^(-1)
#
# So, n0 = p0 * V0 / R / T0 = 100 * 7 / 8.314472 / 240.544439
#        = 0.35
#
# At t = 1, p = 200.

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Mesh]
  file = rz.e
[]

[Functions]
  [./temperature]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 2'
    scale_factor = 240.54443866068704
  [../]
[]

[Variables]
  [./disp_r]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 240.54443866068704
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    use_automatic_differentiation = true
  [../]
  [./heat]
    type = ADDiffusion
    variable = temp
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_r
    boundary = '1 2'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_z
    boundary = '1 2'
    value = 0.0
  [../]
  [./temperatureInterior]
    type = ADFunctionDirichletBC
    preset = false
    boundary = 2
    function = temperature
    variable = temp
  [../]
  [./CavityPressure]
    [./1]
      boundary = 2
      initial_pressure = 100
      R = 8.314472
      temperature = aveTempInterior
      volume = internalVolume
      startup_time = 0.5
      output = ppress
      use_automatic_differentiation = true
    [../]
  [../]
[]

[Materials]
  [./elastic_tensor1]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = 1
  [../]
  [./strain1]
    type = ADComputeAxisymmetricRZFiniteStrain
    block = 1
  [../]
  [./stress1]
    type = ADComputeFiniteStrainElasticStress
    block = 1
  [../]
  [./elastic_tensor2]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
    block = 2
  [../]
  [./strain2]
    type = ADComputeAxisymmetricRZFiniteStrain
    block = 2
  [../]
  [./stress2]
    type = ADComputeFiniteStrainElasticStress
    block = 2
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  nl_abs_tol = 1e-10

  l_max_its = 20

  dt = 0.5
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 2
    execute_on = 'initial linear'
  [../]
  [./aveTempInterior]
    type = SideAverageValue
    boundary = 2
    variable = temp
    execute_on = 'initial linear'
  [../]
[]

[Outputs]
  exodus = true
  [./checkpoint]
    type = Checkpoint
    num_files = 1
  [../]
[]

modules/peridynamics/test/tests/generalized_plane_strain/planestrain_prescribed_OSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
  scalar_out_of_plane_strain = scalar_strain_zz
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 4
    ny = 4
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./scalar_strain_zz]
    order = FIRST
    family = SCALAR
  [../]

  [./strain_zz]
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = ORDINARY_STATE
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]

  [./strain_zz]
    type = NodalRankTwoPD
    variable = strain_zz
    rank_two_tensor = total_strain
    output_type = component
    index_i = 2
    index_j = 2
  [../]
[]

[AuxScalarKernels]
  [./scalar_strain_zz]
    type = FunctionScalarAux
    variable = scalar_strain_zz
    function = scalar_strain_zz_func
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1 - x) * t'
  [../]
  [./scalar_strain_zz_func]
    type = PiecewiseLinear
    xy_data = '0 0
               1 7.901e-5
               2 1.103021e-2'
  [../]
[]

[BCs]
  [./bottom_x]
    type = DirichletBC
    boundary = 1000
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 1000
    variable = disp_y
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialOSPD
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  start_time = 0.0
  end_time = 2.0
[]

[Outputs]
  exodus = true
  file_base = planestrain_prescribed_OSPD
[]

modules/richards/test/tests/jacobian_1/jn22.i

# unsaturated = true
# gravity = true
# supg = true
# transient = true
# piecewiselinearflux = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 1
    [../]
  [../]
[]

[BCs]
  [./left_flux]
    type = RichardsPiecewiseLinearSink
    boundary = 'left right'
    pressures = '-0.9 0.9'
    bare_fluxes = '1E8 2E8'  # cannot make too high as finitedifference constant state bums out due to precision loss
    use_mobility = true
    use_relperm = true
    variable = pressure
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn20
  exodus = false
[]

test/tests/auxkernels/element_var/element_var_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 10
  ny = 10
  elem_type = QUAD4
  # This test uses ElementalVariableValue postprocessors on specific
  # elements, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Functions]
  [./ffn]
    type = ParsedFunction
    value = -4
  [../]

  [./exactfn]
    type = ParsedFunction
    value = x*x+y*y
  [../]

  [./aux_exact_fn]
    type = ParsedFunction
    value = t*(x*x+y*y)
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  #Coupling of nonlinear to Aux
  [./force]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[AuxVariables]
  [./aux_u]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./a]
    type = FunctionAux
    variable = aux_u
    function = aux_exact_fn
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exactfn
  [../]
[]

[Postprocessors]
  [./elem_56]
    type = ElementalVariableValue
    variable = u
    elementid = 56
  [../]

  [./aux_elem_99]
    type = ElementalVariableValue
    variable = aux_u
    elementid = 99
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.01
  start_time = 0
  num_steps = 10
[]

[Outputs]
  exodus = true
  file_base = out
[]

modules/porous_flow/examples/lava_lamp/1phase_convection.i

# Two phase density-driven convection of dissolved CO2 in brine
#
# The model starts with CO2 in the liquid phase only.  The CO2 diffuses into the brine.
# As the density of the CO2-saturated brine is greater
# than the unsaturated brine, a gravitational instability arises and density-driven
# convection of CO2-rich fingers descend into the unsaturated brine.
#
# The instability is seeded by a random perturbation to the porosity field.
# Mesh adaptivity is used to refine the mesh as the fingers form.

[GlobalParams]
  PorousFlowDictator = 'dictator'
  gravity = '0 -9.81 0'
[]

[Adaptivity]
  max_h_level = 2
  marker = marker
  initial_marker = initial
  initial_steps = 2
  [./Indicators]
    [./indicator]
      type = GradientJumpIndicator
      variable = zi
    [../]
  [../]
  [./Markers]
    [./marker]
      type = ErrorFractionMarker
      indicator = indicator
      refine = 0.8
    [../]
    [./initial]
      type = BoxMarker
      bottom_left = '0 1.95 0'
      top_right = '2 2 0'
      inside = REFINE
      outside = DO_NOTHING
    [../]
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  ymin = 1.5
  ymax = 2
  xmax = 2
  ny = 20
  nx = 40
  bias_y = 0.95
[]

[AuxVariables]
  [./xnacl]
    initial_condition = 0.01
  [../]
  [./saturation_gas]
    order = FIRST
    family = MONOMIAL
  [../]
  [./xco2l]
    order = FIRST
    family = MONOMIAL
  [../]
  [./density_liquid]
    order = FIRST
    family = MONOMIAL
  [../]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = 'timestep_end'
  [../]
  [./xco2l]
    type = PorousFlowPropertyAux
    variable = xco2l
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = 'timestep_end'
  [../]
  [./density_liquid]
    type = PorousFlowPropertyAux
    variable = density_liquid
    property = density
    phase = 0
    execute_on = 'timestep_end'
  [../]
[]

[Variables]
  [./pgas]
  [../]
  [./zi]
    scaling = 1e4
  [../]
[]

[ICs]
  [./pressure]
    type = FunctionIC
    function = 10e6-9.81*1000*y
    variable = pgas
  [../]
  [./zi]
    type = ConstantIC
    value = 0
    variable = zi
  [../]
  # [./zi]
  #   type = BoundingBoxIC
  #   variable = zi
  #   x1 = 0
  #   x2 = 2
  #   y1 = 1.95
  #   y2 = 2
  #   inside = 0.1
  #   outside = 0
  # [../]
  [./porosity]
    type = RandomIC
    variable = porosity
    min = 0.25
    max = 0.275
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    value = 0.04
    variable = zi
    boundary = top
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pgas
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pgas
  [../]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = pgas
    disp_long = '0 0'
    disp_trans = '0 0'
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = zi
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = zi
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = zi
    disp_long = '0 0'
    disp_trans = '0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2sw]
      type = CO2FluidProperties
    [../]
    [./co2]
      type = TabulatedFluidProperties
      fp = co2sw
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = '45'
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = 'pgas'
    z = 'zi'
    temperature_unit = Celsius
    xnacl = 'xnacl'
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = porosity
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-11 0 0 0 1e-11 0 0 0 1e-11'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    phase = 0
    n = 2
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    phase = 1
    n = 2
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./diffusivity]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '2e-9 2e-9 2e-9 2e-9'
    tortuosity = '1 1'
  [../]
[]

[Preconditioning]
  active = basic
  [./mumps_is_best_for_parallel_jobs]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
  [./basic]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2             '
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1e6
  nl_max_its = 25
  l_max_its = 100
  dtmax = 1e4
  nl_abs_tol = 1e-6
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 100
    growth_factor = 2
    cutback_factor = 0.5
  [../]
[]

[Functions]
  [./flux]
    type = ParsedFunction
    vals = 'delta_xco2 dt'
    vars = 'dx dt'
    value = 'dx/dt'
  [../]
[]

[Postprocessors]
  [./total_co2_in_gas]
    type = PorousFlowFluidMass
    phase = 1
    fluid_component = 1
  [../]
  [./total_co2_in_liquid]
    type = PorousFlowFluidMass
    phase = 0
    fluid_component = 1
  [../]
  [./numdofs]
    type = NumDOFs
  [../]
  [./delta_xco2]
    type = ChangeOverTimePostprocessor
    postprocessor = total_co2_in_liquid
  [../]
  [./dt]
    type = TimestepSize
  [../]
  [./flux]
    type = FunctionValuePostprocessor
    function = flux
  [../]
[]

[Outputs]
  print_linear_residuals = false
  perf_graph = true
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian/cosserat05.i

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  active = 'cx_elastic cy_elastic cz_elastic x_couple y_couple z_couple x_moment y_moment z_moment'
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./z_couple]
    type = StressDivergenceTensors
    variable = wc_z
    displacements = 'wc_x wc_y wc_z'
    component = 2
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
  [./z_moment]
    type = MomentBalancing
    variable = wc_z
    component = 2
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeCosseratElasticityTensor
    B_ijkl = '1 2.2 2.333 1.9 0.89 2.1'
    fill_method_bending = 'antisymmetric'
    E_ijkl = '1 2.2 2.333 1.9 0.89 2.1'
    fill_method = 'antisymmetric'
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/solid_mechanics/test/tests/predictor/predictor_test.i

# The purpose of this test is to test the simple predictor.  This is a very
# small, monotonically loaded block of material.  If things are working right,
# the predictor should come very close to exactly nailing the solution on steps
# after the first step.  Because of nonlinear geometry, the predictor is slightly
# off in general, but that is mitigated by setting this up so that the elements
# undergo no rotations.

# The main thing to check here is that once the predictor kicks in, there are
# no iterations required.

[Mesh]
  displacements = 'disp_x disp_y disp_z'
  file = predictor_test.e
[] # Mesh

[Functions]
  [./ramp1]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 0.2
  [../]
[] # Functions

[Variables]

  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]

[] # Variables

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]

  [./ss1_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]
  [./ss1_y]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0.0
  [../]
  [./ss1_z]
    type = DirichletBC
    variable = disp_z
    boundary = 4
    value = 0.0
  [../]

  [./ss2_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = ramp1
  [../]
  [./ss2_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = ramp1
  [../]
  [./ss2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

[] # BCs

[Materials]

  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]
[] # Materials

[Executioner]

  type = Transient


  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'




# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-8

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-14
  nl_abs_tol = 1e-9

#  l_max_its = 20

  start_time = 0.0
  dt = 0.5
  num_steps = 2
  end_time = 1.0

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[] # Executioner

[Postprocessors]
  [./initial_residual]
    type = Residual
    residual_type = initial_after_preset
  [../]
[]

[Outputs]
  csv = true
  exodus = true
[] # Outputs

test/tests/transfers/multiapp_userobject_transfer/3d_1d_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  elem_type = EDGE2
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./disp_x_fn]
    type = ParsedFunction
    value = '-x'
  [../]
  [./disp_z_fn]
    type = ParsedFunction
    value = 'x'
  [../]
[]

[AuxVariables]
  [./sub_app_var]
    family = MONOMIAL
    order = CONSTANT
  [../]

  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxKernels]
  [./disp_x_ak]
    type = FunctionAux
    variable = disp_x
    function = 'disp_x_fn'
  [../]
  [./disp_y_ak]
    type = ConstantAux
    variable = disp_y
    value = 0
  [../]
  [./disp_z_ak]
    type = FunctionAux
    variable = disp_z
    function = 'disp_z_fn'
  [../]
[]

[UserObjects]
  [./sub_app_uo]
    type = LayeredAverage
    direction = z
    variable = u
    num_layers = 10
    execute_on = TIMESTEP_END
    use_displaced_mesh = true
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/multi/two_surface03.i

# Plasticit models:
# SimpleTester with a = 0 and b = 1 and strength = 1
# SimpleTester with a = 1 and b = 1 and strength = 2
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 3.0E-6m in z directions and 0.5E-6 in y direction.
# trial stress_zz = 3.0 and stress_yy = 0.5
#
# Then both  SimpleTesters should activate initially and return to the "corner" point
# (stress_zz = 1 = stress_yy), but then the plastic multiplier for SimpleTester2 will
# be negative, and so it will be deactivated, and the algorithm will return to
# stress_zz = 1, stress_yy = 0.5
# internal0 should be 2, and internal1 should be 0

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.5E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '3E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
[]

[UserObjects]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 2
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = two_surface03
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform6.i

# Using CappedMohrCoulomb with tensile failure only
# A single element is incrementally stretched in the in the z direction
# This causes the return direction to be along the hypersurface sigma_II = sigma_III,
# and the resulting stresses are checked to lie on the expected yield surface

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = finite
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '4*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = 'y*(t-0.5)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = 'z*(t-0.5)'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 0.1
  type = Transient
[]


[Outputs]
  file_base = small_deform6
  csv = true
[]

test/tests/misc/jacobian/no_negative_jacobian_2D.i

# The 2D mesh is inverted using a prescribed displacement.
# However, due to use_displaced_mesh = false in the Kernel,
# libMesh does not throw a "negative jacobian" error
[Mesh]
  type = GeneratedMesh
  dim = 2
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxKernels]
  [./disp_x]
    variable = disp_x
    type = FunctionAux
    function = '-x*t'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
    use_displaced_mesh = false
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.8
  end_time = 1.5
[]

modules/tensor_mechanics/test/tests/jacobian/tensile_update3.i

# Tensile, update version, with strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Return to the stress_I = stress_II = stress_III ~1 tip

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 0 0  0 1.9 0  0 0 2.1'
    eigenstrain_name = ini_stress
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/solid_mechanics/LinearStrainHardening/lsh_pressure.i

#
# This test exercises the linear strain hardening material.  The mesh is
# taken from the patch test (7 elements, 1 on the interior).  There are
# symmetry bcs on three faces with a pressure load on another face.
#
# Young's modulus    = 2.4e5
# Yield stress       = 2.4e2
# Hardening constant = 1600
#
# The pressure reaches 2.4e2 at time 1 and 2.6e2 at time 2.  Thus, at
# time 1, the stress is at the yield stress.  2.4e2/2.4e5=0.001 (the
# strain at time 1).  The increase in stress from time 1 to time 2 is
# 20.  20/1600=0.0125 (the plastic strain).  The elastic strain at
# time 2 is 260/2.4e5=0.00108333.  The total strain at time 2 is
# 0.01358333.
#

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = lsh_pressure.e
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_mag]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0  1      2'
    y = '0 -2.4e2 -2.6e2'
  [../]

  [./dts]
    type = PiecewiseLinear
    x = '0    0.8 1   1.8'
    y = '0.8  0.2 0.8 0.2'
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]

  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]

  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]

  [./plastic_strain_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]

  [./plastic_strain_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]

  [./plastic_strain_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = plastic_strain_zz
    index_i = 2
    index_j = 2
  [../]

  [./plastic_strain_mag]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = plastic_strain_mag
  [../]

 []


[BCs]

  [./Pressure]
    [./internal_pressure]
      boundary = 11
      function = top_pull
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
    [../]
  [../]

  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = 10
    value = 0.0
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 9
    value = 0.0
  [../]

  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 14
    value = 0.0
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2 3 4 5 6 7'
    youngs_modulus = 2.4e5
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = '1 2 3 4 5 6 7'
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = 'isoplas'
    block = '1 2 3 4 5 6 7'
  [../]
  [./isoplas]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 2.4e2
    hardening_constant = 1600
    relative_tolerance = 1e-20
    absolute_tolerance = 1e-09
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-6


  start_time = 0.0
  end_time = 2
  dt = 1.5e-3

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]



[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/dirackernels/bh_except04.i

# PorousFlowPeacemanBorehole exception test
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
    initial_condition = 1E7
  [../]
[]

[Kernels]
  [./mass0]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./borehole_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-7
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 1e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    at_nodes = true # Needed to force exepected error
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-12 0 0 0 1E-12 0 0 0 1E-12'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[DiracKernels]
  [./bh]
    type = PorousFlowPeacemanBorehole
    bottom_p_or_t = 0
    fluid_phase = 0
    function_of = temperature
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pp
    unit_weight = '0 0 0'
    character = 1
  [../]
[]

[Postprocessors]
  [./bh_report]
    type = PorousFlowPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = PorousFlowFluidMass
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = PorousFlowFluidMass
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pp
    point = '0 0 0'
    execute_on = timestep_end
  [../]
[]

[Functions]
  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON
[]

test/tests/userobjects/toggle_mesh_adaptivity/toggle_mesh_adaptivity_wait.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Problem]
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
[]

[Adaptivity]
  cycles_per_step = 1
  marker = marker
  max_h_level = 4
  [./Markers]
    [./marker]
      type = BoxMarker
      bottom_left = '0.35 0.25 0'
      top_right = '0.5 0.5 0'
      inside = refine
      outside = coarsen
    [../]
  [../]
[]

[UserObjects]
  [./mesh_adaptivity_off]
    type = ToggleMeshAdaptivity
    mesh_adaptivity = 'off'
    apply_after_timestep = 1
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    print_mesh_changed_info = true
  [../]
[]

modules/tensor_mechanics/test/tests/radial_disp_aux/sphere_1d_spherical.i

# The purpose of this set of tests is to check the values computed
# by the RadialDisplacementAux AuxKernel. They should match the
# radial component of the displacment for a cylindrical or spherical
# model.
# This particular model is of a sphere subjected to uniform thermal
# expansion represented using a 1D spherical model.

[Mesh]
  type = GeneratedMesh
  dim = 1
  elem_type = EDGE3
  nx = 4
  xmin = 0.0
  xmax = 1.0
[]

[GlobalParams]
  displacements = 'disp_x'
[]

[Problem]
  coord_type = RSPHERICAL
[]

[AuxVariables]
  [./temp]
  [../]
  [./rad_disp]
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t+300.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    eigenstrain_names = eigenstrain
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
    use_displaced_mesh = false
  [../]
  [./raddispaux]
    type = RadialDisplacementSphereAux
    variable = rad_disp
  [../]
[]

[BCs]
  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 300
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '51'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-11
  nl_abs_tol = 1e-10

  start_time = 0.0
  end_time = 1
  dt = 1
  dtmin = 1
[]

[Outputs]
  csv = true
  exodus = true
[]

test/tests/transfers/multiapp_scalar_to_auxscalar_transfer/to_sub/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [a]
    family = SCALAR
    order = SIXTH
  []
[]

[ICs]
  [ic]
    type = ScalarComponentIC
    variable = a
    values = '1.0 2.0 3.0 4.0 5.0 6.0'
  []
[]

[Variables]
  [dummy]
  []
[]

[Kernels]
  [dummy]
    type = Diffusion
    variable = dummy
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[MultiApps]
  [sub]
    type = TransientMultiApp
    positions = '0 0 0'
    input_files = 'sub.i'
  []
[]

[Transfers]
  [to_sub]
    type = MultiAppScalarToAuxScalarTransfer
    multi_app = sub
    source_variable = 'a'
    to_aux_scalar = 'b'
    direction = to_multiapp
  []
[]

[Outputs]
    exodus = true
[]

modules/porous_flow/test/tests/jacobian/mass_vol_exp02.i

# Tests the PorousFlowMassVolumetricExpansion kernel
# Fluid with constant bulk modulus, van-Genuchten capillary, HM porosity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  block = 0
  PorousFlowDictator = dictator
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./disp_y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./disp_z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
  [./p]
    type = RandomIC
    min = -1
    max = 1
    variable = porepressure
  [../]
[]

[BCs]
  # necessary otherwise volumetric strain rate will be zero
  [./disp_x]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./disp_y]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'left right'
  [../]
  [./disp_z]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'left right'
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./poro]
    type = PorousFlowMassVolumetricExpansion
    fluid_component = 0
    variable = porepressure
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '2 3'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    porosity_zero = 0.1
    biot_coefficient = 0.5
    solid_bulk = 1
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jacobian2
  exodus = false
[]

test/tests/bcs/periodic/parallel_pbc_using_trans.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  nz = 0
  xmax = 10
  ymax = 10
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Functions]
  [./tr_x]
    type = ParsedFunction
    value = x
  [../]
  [./tr_y]
    type = ParsedFunction
    value = y+10
  [../]
  [./itr_x]
    type = ParsedFunction
    value = x
  [../]
  [./itr_y]
    type = ParsedFunction
    value = y-10
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./forcing]
    type = GaussContForcing
    variable = u
    y_center = 1
    x_spread = 0.25
    y_spread = 0.5
  [../]
  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./x]
      primary = bottom
      secondary = top
      transform_func = 'tr_x tr_y'
      inv_transform_func = 'itr_x itr_y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  num_steps = 10
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/rdg/test/tests/postprocessors/boundary_flux_postprocessor/boundary_flux_postprocessor.i

# This input file is used to test BoundaryFluxPostprocessor, which queries
# fluxes computed using user objects derived from BoundaryFluxBase. The boundary
# flux used in this test is TestBoundaryFlux, which expects a solution vector
# of size 3 (call this U = {A, B, C}) and computes a flux of size 2 with the
# following entries:
#
# flux[0] = (A - B) * C * nx
# flux[1] = A * B * nx
#
# where the normal vector used is {nx, ny, nz}.

A = 1
B = 2
C = 3

# Multiple cases are computed in this test. Each corresponds to a different PP object:
#   * flux0_boundary0: boundary 0, flux entry 0, default normal ({-1, 0, 0})
#   * flux0_boundary1: boundary 1, flux entry 0, default normal ({1, 0, 0})
#   * flux0_provided:  boundary 0, flux entry 0, user-provided normal ({2, 0, 0})
#   * flux1_boundary0: boundary 0, flux entry 1, default normal ({-1, 0, 0})

nx_boundary0 = -1
nx_boundary1 = 1
nx_provided  = 2

flux0_boundary0 = ${fparse (A - B) * C * nx_boundary0}
flux0_boundary1 = ${fparse (A - B) * C * nx_boundary1}
flux0_provided  = ${fparse (A - B) * C * nx_provided}
flux1_boundary0 = ${fparse A * B * nx_boundary0}

[GlobalParams]
  order = CONSTANT
  family = MONOMIAL
  execute_on = 'initial timestep_end'
  variables = 'A B C'
[]

[Postprocessors]
  [./flux0_boundary0]
    type = BoundaryFluxPostprocessor
    boundary_flux_uo = boundary_flux_flux0_boundary0
    boundary = 0
    flux_index = 0
  [../]
  [./flux0_boundary1]
    type = BoundaryFluxPostprocessor
    boundary_flux_uo = boundary_flux_flux0_boundary1
    boundary = 1
    flux_index = 0
  [../]
  [./flux0_provided]
    type = BoundaryFluxPostprocessor
    boundary_flux_uo = boundary_flux_flux0_provided
    boundary = 0
    flux_index = 0
    normal = '${nx_provided} 0 0'
  [../]
  [./flux1_boundary0]
    type = BoundaryFluxPostprocessor
    boundary_flux_uo = boundary_flux_flux1_boundary0
    boundary = 0
    flux_index = 1
  [../]

  [./flux0_boundary0_err]
    type = RelativeDifferencePostprocessor
    value1 = flux0_boundary0
    value2 = ${flux0_boundary0}
  [../]
  [./flux0_boundary1_err]
    type = RelativeDifferencePostprocessor
    value1 = flux0_boundary1
    value2 = ${flux0_boundary1}
  [../]
  [./flux0_provided_err]
    type = RelativeDifferencePostprocessor
    value1 = flux0_provided
    value2 = ${flux0_provided}
  [../]
  [./flux1_boundary0_err]
    type = RelativeDifferencePostprocessor
    value1 = flux1_boundary0
    value2 = ${flux1_boundary0}
  [../]
[]

[UserObjects]
  [./boundary_flux_flux0_boundary0]
    type = TestBoundaryFlux
  [../]
  [./boundary_flux_flux0_boundary1]
    type = TestBoundaryFlux
  [../]
  [./boundary_flux_flux0_provided]
    type = TestBoundaryFlux
  [../]
  [./boundary_flux_flux1_boundary0]
    type = TestBoundaryFlux
  [../]
[]

[Variables]
  [./A]
  [../]
  [./B]
  [../]
  [./C]
  [../]
[]

[ICs]
  [./A_ic]
    type = ConstantIC
    variable = A
    value = ${A}
  [../]
  [./B_ic]
    type = ConstantIC
    variable = B
    value = ${B}
  [../]
  [./C_ic]
    type = ConstantIC
    variable = C
    value = ${C}
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Problem]
  kernel_coverage_check = false
  solve = false
[]

[Executioner]
  type = Transient
  scheme = implicit-euler
  dt = 1
  num_steps = 1
[]

[Outputs]
  csv = true
  show = 'flux0_boundary0_err flux0_boundary1_err flux0_provided_err flux1_boundary0_err'
[]

modules/tensor_mechanics/test/tests/jacobian/tensile_update8.i

# Tensile, update version, with strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0
    internal_limit = 1E-3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 -1 0.5  1 1.9 0  0.5 0 3'
    eigenstrain_name = ini_stress
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/phase_field/test/tests/MultiPhase/switchingfunctionmultiphasematerial.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  xmin = 0
  xmax = 30
  ymin = 0
  ymax = 30
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./c]
  [../]
  [./w]
  [../]
  [./eta1]
  [../]
  [./eta2]
  [../]
  [./eta3]
  [../]
  [./eta0]
  [../]
[]

[ICs]

  [./IC_eta2]
    x1 = 0
    y1 = 15
    x2 = 30
    y2 = 30
    inside = 1.0
    outside = 0.0
    type = BoundingBoxIC
    variable = eta2
    int_width = 0
  [../]
  [./IC_eta3]
    x1 = 15
    y1 = 0
    x2 = 30
    y2 = 15
    inside = 1.0
    outside = 0.0
    type = BoundingBoxIC
    variable = eta3
    int_width = 0
  [../]
  [./IC_eta4]
    x1 = 0
    y1 = 0
    x2 = 15
    y2 = 15
    inside = 1.0
    outside = 0.0
    type = BoundingBoxIC
    variable = eta0
    int_width = 0
  [../]
  [./IC_c]
    x1 = 15
    y1 = 15
    radius = 8.0
    outvalue = 0.05
    variable = c
    invalue = 1.0
    type = SmoothCircleIC
    int_width = 3.0
  [../]
  [./IC_eta1]
    x1 = 15
    y1 = 15
    radius = 8.0
    outvalue = 0.0
    variable = eta1
    invalue = 1.0
    type = SmoothCircleIC
    int_width = 3.0
  [../]
[]

# Not evalulating time evolution to improve test performance, since we are only testing
# the material property. However, the kernel and free energy are left in place to allow
# this test to be easily turned in to a working example

#[Kernels]
#  [./c_dot]
#    type = CoupledTimeDerivative
#    variable = w
#    v = c
#  [../]
#  [./c_res]
#    type = SplitCHParsed
#    variable = c
#    f_name = F
#    kappa_name = kappa_c
#    w = w
#    args = 'eta1 eta2 eta3 eta0'
#  [../]
#  [./w_res]
#    # args = 'c'
#    type = SplitCHWRes
#    variable = w
#    mob_name = M
#  [../]
#  [./AC1_bulk]
#    type = AllenCahn
#    variable = eta1
#    f_name = F
#    args = 'c eta2 eta3 eta0'
#  [../]
#  [./AC1_int]
#    type = ACInterface
#    variable = eta1
#    kappa_name = kappa_s
#  [../]
#  [./e1_dot]
#    type = TimeDerivative
#    variable = eta1
#  [../]
#  [./AC2_bulk]
#    type = AllenCahn
#    variable = eta2
#    f_name = F
#    args = 'c eta1 eta3 eta0'
#  [../]
#  [./AC2_int]
#    type = ACInterface
#    variable = eta2
#  [../]
#  [./e2_dot]
#    type = TimeDerivative
#    variable = eta2
#  [../]
#  [./AC3_bulk]
#    type = AllenCahn
#    variable = eta3
#    f_name = F
#    args = 'c eta2 eta1 eta0'
#  [../]
#  [./AC3_int]
#    type = ACInterface
#    variable = eta3
#  [../]
#  [./e3_dot]
#    type = TimeDerivative
#    variable = eta3
#  [../]
#  [./AC4_bulk]
#    type = AllenCahn
#    variable = eta0
#    f_name = F
#    args = 'c eta2 eta3 eta1'
#  [../]
#  [./AC4_int]
#    type = ACInterface
#    variable = eta0
#  [../]
#  [./e4_dot]
#    type = TimeDerivative
#    variable = eta0
#  [../]
#[]

[Materials]
  [./ha_test]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = ha
    all_etas = 'eta0 eta1 eta2 eta3'
    phase_etas = 'eta1'
    outputs = exodus
  [../]
  [./hb_test]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = hb
    all_etas = 'eta0 eta1 eta2 eta3'
    phase_etas = 'eta0 eta2 eta3'
    outputs = exodus
  [../]
  #[./ha]
  #  type = DerivativeParsedMaterial
  #  args = 'eta1 eta2 eta3 eta0'
  #  f_name = ha_parsed
  #  function = 'eta1^2/(eta1^2+eta2^2+eta3^2+eta0^2)'
  #  derivative_order = 2
  #  outputs = exodus
  #[../]
  #[./hb]
  #  type = DerivativeParsedMaterial
  #  args = 'eta1 eta2 eta3 eta0'
  #  f_name = hb_parsed
  #  function = '(eta2^2+eta3^2+eta0^2)/(eta1^2+eta2^2+eta3^2+eta0^2)'
  #  derivative_order = 2
  #  outputs = exodus
  #[../]

  #[./FreeEng]
  #  type = DerivativeParsedMaterial
  #  args = 'c eta1 eta2 eta3 eta0'
  #  f_name = F
  #  constant_names = 'c1 c2 s g d e h z'
  #  constant_expressions = '1.0 0.0 1.5 1.5 1.0 1.0 1 1.0'
  #  material_property_names = 'ha(eta1,eta2,eta3,eta0) hb(eta1,eta2,eta3,eta0)'
  #  function = 'a:=eta1^2/(eta1^2+eta2^2+eta3^2+eta0^2);f1:=ha*(c-c1)^2;b:=(eta2^2+eta3^2+eta0^2)/(eta1^2+eta2^2+eta3^2+eta0^2);f2:=hb*(c-c2)^2
  #  ;f3:=1/4*eta1^4-1/2*eta1^2+1/4*eta2^4-1/2*eta2^2+1/4*eta3^4-1/2*eta3^2+1/4*eta0^4-1/2*eta0^2
  #  ;f4:=z*s*(eta1^2*eta2^2+eta1^2*eta3^2+eta1^2*eta0^2)+g*(eta2^2*eta3^2+eta2^2*eta0^2+eta3^2*eta0^2);f:=1/4+e*f1+d*f2+h*(f3+f4);f'
  #  derivative_order = 2
  #[../]
  [./const]
    type = GenericConstantMaterial
    prop_names = 'kappa_c kappa_s kappa_op L M'
    prop_values = '0 3 3 1.0 1.0'
    outputs = exodus
  [../]

[]


[Executioner]
  type = Transient
  num_steps = 1
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]


[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/penalty_dirichlet/penalty_dirichlet.i

#This tests the PenaltyDirichletBC and PenaltyFunctionDirichletBC on
#a simple solid mechanics problem.  A unit cube of material has
#penalty BCs on the left and right hand side.  The penalty for both of
#those BCs is the same as the stiffness of the block in that direction,
#so the compliance is due to the left BC, block, and right BC in equal
#portions. As a result, the displacement on the left side is 1/3 the
#displacement imposed by the function, and on the right side it is 2/3
#that value.

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  nx = 2
  ny = 2
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    variable = stress_xx
    tensor = stress
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    variable = stress_zz
    tensor = stress
    index = 2
  [../]
[]

[Functions]
  [./pull]
    type = PiecewiseLinear
    xy_data = '0 0
               1 0.001'
  [../]
[]

[BCs]
  [./left_x]
    type = PenaltyDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
    penalty = 1e4
  [../]
  [./right_x]
    type = FunctionPenaltyDirichletBC
    variable = disp_x
    boundary = right
    function = pull
    penalty = 1e4
  [../]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
[]

[Materials]
  [./solid]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    youngs_modulus = 1e4
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew '
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type'
  petsc_options_value = '101 hypre boomeramg'
  nl_rel_tol = 1e-12
  l_tol = 1e-5
  start_time = 0.0
  dt = 1
  num_steps = 1
[]

[Outputs]
  file_base = out
  [./exodus]
    type = Exodus
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update3.i

# MC update version, with only Tensile with tensile strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Return to the stress_I = stress_II = stress_III ~1 tip

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0E3
    shear_modulus = 1.3E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '2 0 0  0 1.9 0  0 0 2.1'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/porous_flow/test/tests/sinks/s10.i

# apply a basic sink fluxes to all boundaries.
# Sink strength = S kg.m^-2.s^-1
#
# Use fully-saturated physics, with no flow
# (permeability is zero).
# Each finite element is (2m)^3 in size, and
# porosity is 0.125, so each element holds 1 m^3
# of fluid.
# With density = 10 exp(pp)
# then each element holds 10 exp(pp) kg of fluid
#
# Each boundary node that is away from other boundaries
# (ie, not on a mesh corner or edge) therefore holds
# 5 exp(pp)
# kg of fluid, which is just density * porosity * volume_of_node
#
# Each of such nodes are exposed to a sink flux of strength
# S * A
# where A is the area controlled by the node (in this case 4 m^2)
#
# So d(5 exp(pp))/dt = -4S, ie
# exp(pp) = exp(pp0) - 0.8 * S * t
#
# This is therefore similar to s01.i .  However, this test is
# run 6 times: one for each boundary.  The purpose of this is
# to ensure that the PorousFlowSink BC removes fluid from the
# correct nodes.  This is nontrivial because of the upwinding
# and storing of Material Properties at nodes.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 5
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 10
  zmin = 0
  zmax = 10
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Variables]
  [./pp]
    initial_condition = 1
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 10
      thermal_expansion = 0
      viscosity = 11
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.125
  [../]
[]

[BCs]
  [./flux]
    type = PorousFlowSink
    boundary = left
    variable = pp
    use_mobility = false
    use_relperm = false
    fluid_phase = 0
    flux_function = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_max_it -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu 10000 NONZERO 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.25
  end_time = 1
  nl_rel_tol = 1E-12
  nl_abs_tol = 1E-12
[]

[Outputs]
  file_base = s10
  [./exodus]
    type = Exodus
    execute_on = 'initial final'
  [../]
[]

modules/phase_field/test/tests/phase_field_kernels/ACInterfaceStress_jacobian.i

#
# Test the parsed function free enery Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 8
  ny = 8
  nz = 8
  xmax = 20
  ymax = 20
  zmax = 20
[]

[Variables]
  [./eta]
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0.0
      y1 = 0.0
      radius = 12.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 16.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]

  [./ACInterfaceStress]
    type = ACInterfaceStress
    variable = eta
    mob_name = 1
    stress = 2.7
  [../]
[]

[Materials]
  [./strain]
    type = GenericConstantRankTwoTensor
    tensor_name = elastic_strain
    tensor_values = '0.11 0.12 0.13 0.21 0.22 0.23 0.31 0.32 0.33'
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'
  solve_type = 'PJFNK'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 2
  dt = 1000
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/DiffuseCreep/stress_based_chem_pot.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 2
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);0.1+0.1*v'
    [../]
  [../]
  [./mu]
  [../]
  [./jx]
  [../]
  [./jy]
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./gb]
    family = LAGRANGE
    order  = FIRST
  [../]
  [./creep_strain_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./stress_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./mu_prop]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./mech_prop]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./total_potential]
    family = MONOMIAL
    order  = CONSTANT
  [../]
[]

[Kernels]
  [./conc]
    type = CHSplitConcentration
    variable = c
    mobility = mobility_prop
    chemical_potential_var = mu
  [../]
  [./chempot]
    type = CHSplitChemicalPotential
    variable = mu
    chemical_potential_prop = total_potential
    c = c
  [../]
  [./flux_x]
    type = CHSplitFlux
    variable = jx
    component = 0
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./flux_y]
    type = CHSplitFlux
    variable = jy
    component = 1
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
  [../]
[]

[AuxKernels]
  [./gb]
    type = FunctionAux
    variable = gb
    function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);v'
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    variable = creep_strain_xx
    rank_two_tensor = creep_strain
    index_i = 0
    index_j = 0
  [../]
  [./stress_xx]
    type = RankTwoAux
    variable = stress_xx
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
  [../]
  [./stress_xy]
    type = RankTwoAux
    variable = stress_xy
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
  [../]
  [./mu_prop]
    type = MaterialRealAux
    property = mu_prop
    variable = mu_prop
  [../]
  [./mech_prop]
    type = MaterialRealAux
    property = mech_prop
    variable = mech_prop
  [../]
  [./total_potential]
    type = MaterialRealAux
    property = total_potential
    variable = total_potential
  [../]
[]

[Materials]
  [./chemical_potential]
    type = DerivativeParsedMaterial
    block = 0
    f_name = mu_prop
    args = c
    function = 'c'
    derivative_order = 1
  [../]
  [./mechanical_potential]
    type = StressBasedChemicalPotential
    property_name = mech_prop
    stress_name = stress
    direction_tensor_name = aniso_tensor
    prefactor_name = 1.0
  [../]
  [./total_potential]
    type = DerivativeSumMaterial
    block = 0
    f_name = total_potential
    sum_materials = 'mu_prop mech_prop'
    args = 'c'
    derivative_order = 2
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    function = 'c*(1.0-c)'
    args = c
    f_name = var_dep
    derivative_order = 1
  [../]
  [./mobility]
    type = CompositeMobilityTensor
    block = 0
    M_name = mobility_prop
    tensors = diffusivity
    weights = var_dep
    args = c
  [../]
  [./phase_normal]
    type = PhaseNormalTensor
    phase = gb
    normal_tensor_name = gb_normal
  [../]
  [./aniso_tensor]
    type = GBDependentAnisotropicTensor
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = aniso_tensor
  [../]
  [./diffusivity]
    type = GBDependentDiffusivity
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = diffusivity
  [../]
  [./diffuse_strain_increment]
    type = FluxBasedStrainIncrement
    xflux = jx
    yflux = jy
    gb = gb
    property_name = diffuse
  [../]
  [./diffuse_creep_strain]
    type = SumTensorIncrements
    tensor_name = creep_strain
    coupled_tensor_increment_names = diffuse
  [../]
  [./strain]
   type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y'
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
    inelastic_strain_names = creep_strain
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
  [../]
[]

[BCs]
  [./Periodic]
    [./cbc]
      auto_direction = 'x y'
      variable = c
    [../]
  [../]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_rel_tol = 1e-10
  nl_max_its = 5

  l_tol = 1e-4
  l_max_its = 20

  dt = 1
  num_steps = 5
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking_rz_exponential.i

#
# Test to exercise the exponential stress release
#
# Stress vs. strain should show a linear relationship until cracking,
#   an exponential stress release, a linear relationship back to zero
#   strain, a linear relationship with the original stiffness in
#   compression and then back to zero strain, a linear relationship
#   back to the exponential curve, and finally further exponential
#   stress release.

[Mesh]
  file = cracking_rz_test.e
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Functions]
  [./disply]
    type = PiecewiseLinear
    x = '0 1       2  3      4 5       6'
    y = '0 0.00175 0 -0.0001 0 0.00175 0.0035'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[BCs]
  [./pully]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = disply
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./sides]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 186.5e9
    poissons_ratio = 0.316
  [../]
  [./elastic_stress]
    type = ComputeSmearedCrackingStress
    cracking_stress = 119.3e6
    softening_models = exponential_softening
  [../]
  [./exponential_softening]
    type = ExponentialSoftening
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-ksp_gmres_restart -pc_type'
  petsc_options_value = '101                lu'

  line_search = 'none'
  l_max_its = 100
  l_tol = 1e-5

  nl_max_its = 10
  nl_rel_tol = 1e-8

  nl_abs_tol = 1e-4

  start_time = 0.0
  end_time = 6.0
  dt = 0.005
  dtmin = 0.005
[]

[Outputs]
  exodus = true
[]

test/tests/auxkernels/time_derivative/coupled_aux_time_derivative.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
[]

[Functions]
  [./f_fn]
    type = ParsedFunction
    value = t*(x+y)
  [../]
  [./f_dot_fn]
    type = ParsedFunction
    value = (x+y)
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./l2_proj]
    type = Reaction
    variable = u
  [../]
  [./dck]
    type = DotCouplingKernel
    variable = u
    v = f
  [../]
[]

[AuxVariables]
  [./f]
  [../]

  [./g]
  [../]
[]

[AuxKernels]
  [./f_k]
    type = FunctionAux
    variable = f
    function = f_fn
  [../]

  # We do not allow coupling of time derivatives of aux vars into the aux vars
  [./g_k]
    type = DotCouplingAux
    variable = g
    v = f
  [../]
[]

[Postprocessors]
  [./l2_error]
    type = ElementL2Error
    variable = u
    function = f_dot_fn
  [../]
[]

[Executioner]
  type = Transient

  dt = 0.1
  num_steps = 2

  nl_abs_tol = 1.e-15
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/pls04.i

# PorousFlowPiecewiseLinearSink with 2-phase, 3-components, with enthalpy, internal_energy, and thermal_conductivity
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 2
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph0_sp1]
  [../]
  [./massfrac_ph1_sp0]
  [../]
  [./massfrac_ph1_sp1]
  [../]
  [./temp]
  [../]
[]


[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp ppwater ppgas massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
    number_fluid_phases = 2
    number_fluid_components = 3
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[ICs]
  [./temp]
    type = RandomIC
    variable = temp
    min = 1
    max = 2
  [../]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp1]
    type = RandomIC
    variable = massfrac_ph0_sp1
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp1]
    type = RandomIC
    variable = massfrac_ph1_sp1
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./dummy_temp]
    type = TimeDerivative
    variable = temp
  [../]
  [./dummy_ppwater]
    type = TimeDerivative
    variable = ppwater
  [../]
  [./dummy_ppgas]
    type = TimeDerivative
    variable = ppgas
  [../]
  [./dummy_m00]
    type = TimeDerivative
    variable = massfrac_ph0_sp0
  [../]
  [./dummy_m01]
    type = TimeDerivative
    variable = massfrac_ph0_sp1
  [../]
  [./dummy_m10]
    type = TimeDerivative
    variable = massfrac_ph1_sp0
  [../]
  [./dummy_m11]
    type = TimeDerivative
    variable = massfrac_ph1_sp1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
      cv = 1.1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1.4
      cv = 1.8
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph0_sp1 massfrac_ph1_sp0 massfrac_ph1_sp1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '0.1 0.2 0.3 0.2 0 0.1 0.3 0.1 0.1'
    wet_thermal_conductivity = '10 2 31 2 40 1 31 1 10'
    exponent = 0.5
  [../]
[]

[BCs]
  [./flux_w]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'left'
    pt_vals = '-1 -0.5 0'
    multipliers = '1 2 4'
    variable = ppwater
    mass_fraction_component = 0
    fluid_phase = 0
    use_relperm = true
    use_mobility = true
    use_enthalpy = true
    flux_function = 'x*y'
  [../]
  [./flux_g]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'top'
    pt_vals = '0 0.5 1'
    multipliers = '1 -2 4'
    mass_fraction_component = 0
    variable = ppgas
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    use_internal_energy = true
    flux_function = '-x*y'
  [../]
  [./flux_1]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'right'
    pt_vals = '0 0.5 1'
    multipliers = '1 3 4'
    mass_fraction_component = 1
    variable = massfrac_ph0_sp0
    fluid_phase = 0
    use_relperm = true
    use_mobility = true
    use_internal_energy = true
  [../]
  [./flux_2]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'back top'
    pt_vals = '0 0.5 1'
    multipliers = '0 1 -3'
    mass_fraction_component = 1
    variable = massfrac_ph1_sp0
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    use_enthalpy = true
    flux_function = '0.5*x*y'
  [../]
  [./flux_3]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'right'
    pt_vals = '0 0.5 1'
    multipliers = '1 3 4'
    mass_fraction_component = 2
    variable = ppwater
    fluid_phase = 0
    use_relperm = true
    use_enthalpy = true
    use_mobility = true
  [../]
  [./flux_4]
    type = PorousFlowPiecewiseLinearSink
    boundary = 'back top'
    pt_vals = '0 0.5 1'
    multipliers = '0 1 -3'
    mass_fraction_component = 2
    variable = massfrac_ph1_sp0
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '-0.5*x*y'
    use_enthalpy = true
    use_thermal_conductivity = true
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  file_base = pls04
[]

test/tests/time_integrators/bdf2/bdf2_adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  nx = 4
  ny = 4
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = ConstantIC
      value = 0
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    # dudt = 3*t^2*(x^2 + y^2)
    value = 3*t*t*((x*x)+(y*y))-(4*t*t*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*t*t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  active = 'diff ie ffn'

  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  active = 'all'

  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 1
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = 0.25

  [./Adaptivity]
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_2/ring2_template1_sm.i

[Mesh]
  file = ring2_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y5]
    type = NodalVariableValue
    nodeid = 4
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x5 disp_y5 disp_x9 disp_y9 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/simple_contact/simple_contact_rz_dirac_test.i

#
# The analytic solution is:
#   disp_x = -7e-5 * x
#   disp_y =  6e-5 * y
#   stress_xx = stress_zz = -100
#   stress_yy = stress_xy = 0
#
# Note: Run merged_rz.i to generate a solution to compare to that doesn't use contact.

[Mesh]
  file = contact_rz.e
  # PETSc < 3.5.0 requires the iteration patch_update_strategy to
  # avoid PenetrationLocator warnings, which are currently treated as
  # errors by the TestHarness.
  patch_update_strategy = 'iteration'
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 1'
    scale_factor = 100
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = FINITE
    generate_output = 'stress_xx stress_xy stress_zx stress_yy stress_zz stress_yz'
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e5
    system = DiracKernel
  [../]
[]


[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 10
    value = 0.0
  [../]

  [./Pressure]
    [./right_pressure]
      boundary = 4
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
    [../]
  [../]
[]

[Materials]
  [./stiffStuff]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type '
  petsc_options_value = 'lu       '

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-9

  l_max_its = 20
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/xfem/test/tests/single_var_constraint_2d/stationary_jump_fluxjump.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.0'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0.5
    jump_flux = 1
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/time_steppers/iteration_adaptive/adapt_tstep_grow_init_dt_restart.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmax = 5
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 10
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = -1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 50.0
  n_startup_steps = 2
  dtmax = 6.0
  [./TimeStepper]
    type = IterationAdaptiveDT
    optimal_iterations = 10
    dt = 1.0
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

[Problem]
  restart_file_base = adapt_tstep_grow_init_dt_out_cp/LATEST
[]

modules/porous_flow/test/tests/heterogeneous_materials/constant_poroperm.i

# Assign porosity and permeability variables from constant AuxVariables to create
# a heterogeneous model

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
  xmax = 3
  ymax = 3
  zmax = 3
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 -10'
[]

[Variables]
  [./ppwater]
    initial_condition = 1.5e6
  [../]
[]

[AuxVariables]
  [./poro]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./poromat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxxmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxymat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permxzmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyxmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyymat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permyzmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzxmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzymat]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permzzmat]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./poromat]
    type = PorousFlowPropertyAux
    property = porosity
    variable = poromat
  [../]
  [./permxxmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permxxmat
    column = 0
    row = 0
  [../]
  [./permxymat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permxymat
    column = 1
    row = 0
  [../]
  [./permxzmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permxzmat
    column = 2
    row = 0
  [../]
  [./permyxmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permyxmat
    column = 0
    row = 1
  [../]
  [./permyymat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permyymat
    column = 1
    row = 1
  [../]
  [./permyzmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permyzmat
    column = 2
    row = 1
  [../]
  [./permzxmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permzxmat
    column = 0
    row = 2
  [../]
  [./permzymat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permzymat
    column = 1
    row = 2
  [../]
  [./permzzmat]
    type = PorousFlowPropertyAux
    property = permeability
    variable = permzzmat
    column = 2
    row = 2
  [../]
[]

[ICs]
  [./poro]
    type = RandomIC
    seed = 0
    variable = poro
    max = 0.5
    min = 0.1
  [../]
  [./permx]
    type = FunctionIC
    function = permx
    variable = permxx
  [../]
  [./permy]
    type = FunctionIC
    function = permy
    variable = permyy
  [../]
  [./permz]
    type = FunctionIC
    function = permz
    variable = permzz
  [../]
[]

[Functions]
  [./permx]
    type = ParsedFunction
    value = '(1+x)*1e-11'
  [../]
  [./permy]
    type = ParsedFunction
    value = '(1+y)*1e-11'
  [../]
  [./permz]
    type = ParsedFunction
    value = '(1+z)*1e-11'
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    variable = ppwater
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      viscosity = 1e-3
      thermal_expansion = 0
      cv = 2
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = ppwater
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = poro
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConstFromVar
    perm_xx = permxx
    perm_yy = permyy
    perm_zz = permzz
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[Postprocessors]
  [./mass_ph0]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol'
    petsc_options_value = 'bcgs bjacobi 1E-12 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 100
  dt = 100
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  perf_graph = true
[]

modules/richards/test/tests/jacobian_2/jn07.i

# two phase
# unsaturated = true

# gravity = false
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 0.01
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn07
  exodus = false
[]

test/tests/multiapps/relaxation/picard_relaxed_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./v]
  [../]
[]

[AuxVariables]
  [./u]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./force_v]
    type = CoupledForce
    variable = v
    v = u
  [../]
  [./time_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 2
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/reset/multilevel_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '1 1 0'
    input_files = multilevel_sub_sub.i
    output_in_position = true
  [../]
[]

tutorials/darcy_thermo_mech/step10_multiapps/tests/auxkernels/corrosion/corrosion.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  ymax = 0.1
  xmax = 0.1
  uniform_refine = 0
[]

[Adaptivity]
  max_h_level = 3
  initial_steps = 5
  cycles_per_step = 2
  initial_marker = error_marker
  marker = error_marker
  [Indicators]
    [phi_jump]
      type = GradientJumpIndicator
      variable = phi
    []
  []
  [Markers]
    [error_marker]
      type = ErrorFractionMarker
      indicator = phi_jump
      refine = 0.9
    []
  []
[]

[Variables]
  [temperature]
    initial_condition = 300
  []
[]

[AuxVariables]
  [phi]
  []
[]

[AuxKernels]
  [corrosion]
    type = RandomCorrosion
    execute_on = 'timestep_end'
    variable = phi
    reference_temperature = 300
    temperature = 301
  []
[]

[Kernels]
  [heat_conduction]
    type = HeatConduction
    variable = temperature
  []
[]

[BCs]
  [left]
    type = PostprocessorDirichletBC
    variable = temperature
    boundary = left
    postprocessor = 301
  []
  [right]
    type = NeumannBC
    variable = temperature
    boundary = right
    value = 100 # prescribed flux

  []
[]

[Materials]
  [column]
    type = PackedColumn
    temperature = temperature
    radius = 1 # mm
    phase = phi
    outputs = exodus
    output_properties = porosity
  []
[]

[Problem]
  type = FEProblem
[]

[Postprocessors]
  [k_eff]
    type = ThermalConductivity
    variable = temperature
    T_hot = 301
    flux = 100
    dx = 0.1
    boundary = right
    length_scale = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  [console]
    type = Console
    execute_postprocessors_on = 'timestep_begin timestep_end'
  []
[]

[ICs]
  [close_pack]
    radius = 0.01
    outvalue = 0 # water
    variable = phi
    invalue = 1 #steel
    type = ClosePackIC
  []
[]

modules/porous_flow/test/tests/aux_kernels/darcy_velocity_lower_except.i

# Exception testing for PorousFlowDarcyVelocityComponentLowerDimensional
# Checking that an error is produced if the AuxVariable is not defined only on
# lower-dimensional elements
[Mesh]
  type = FileMesh
  file = fractured_block.e
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '1 0.5 0.2'
[]

[Variables]
  [./pp]
  [../]
[]

[Kernels]
  [./dummy]
    type = TimeDerivative
    variable = pp
  [../]
[]

[AuxVariables]
  [./fracture_vel_x]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./fracture_vel_x]
    type = PorousFlowDarcyVelocityComponentLowerDimensional
    variable = fracture_vel_x
    component = x
    fluid_phase = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1E16
      viscosity = 10
      density0 = 2
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '5 0 0 0 5 0 0 0 5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 1
[]

test/tests/transfers/multiapp_copy_transfer/errors/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = sub.i
    execute_on = timestep_end
  [../]
[]

[Transfers]
  [./to_sub]
    type = MultiAppCopyTransfer
    direction = to_multiapp
    source_variable = u
    variable = u
    multi_app = sub
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/frictionless_penalty_dirac_sm.i

# This is a dirac (contact formulation) version of frictionless_penalty.i
[Mesh]
  file = blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e7
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    master = 2
    slave = 3
    model = frictionless
    formulation = penalty
    penalty = 1e+7
    system = dirackernel
  [../]
[]

modules/porous_flow/test/tests/jacobian/basic_advection3.i

# Basic advection with 1 porepressure as a PorousFlow variable
# Constant permeability
# Constant viscosity
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./u]
  [../]
  [./P]
  [../]
[]

[ICs]
  [./P]
    type = RandomIC
    variable = P
    min = -1
    max = 0
  [../]
  [./u]
    type = RandomIC
    variable = u
  [../]
[]

[Kernels]
  [./dummy_P]
    type = NullKernel
    variable = P
  [../]
  [./u_advection]
    type = PorousFlowBasicAdvection
    variable = u
    phase = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = P
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1
    m = 0.6
    sat_lr = 0.1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 3
      density0 = 4
      thermal_expansion = 0
      viscosity = 150.0
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
  [../]
  [./ppss_qp]
    type = PorousFlow1PhaseP
    porepressure = P
    capillary_pressure = pc
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '5 0 0 0 5 0 0 0 5'
  [../]
  [./relperm_qp]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./darcy_velocity_qp]
    type = PorousFlowDarcyVelocityMaterial
    gravity = '0.25 0 0'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-snes_type'
    petsc_options_value = ' test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

test/tests/kernels/ad_vector_couple/ad_grad_vector_couple.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [u]
    family = LAGRANGE
    order = FIRST
  []
  [v]
    family = LAGRANGE_VEC
    order = FIRST
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = ADDiffusion
    variable = u
  []
  [convection]
    type = ADCoupledVectorConvection
    variable = u
    velocity_vector = v
    use_grad_row = true
  []
  [diff_v]
    type = ADVectorDiffusion
    variable = v
  []
[]

[BCs]
  [left]
    type = ADFunctionDirichletBC
    variable = u
    function = 1
    boundary = 'left'
  []
  [right]
    type = ADFunctionDirichletBC
    variable = u
    function = 2
    boundary = 'bottom'
  []

  [left_v]
    type = ADVectorFunctionDirichletBC
    variable = v
    function_x = 1
    function_y = 2
    boundary = 'left'
  []
  [right_v]
    type = ADVectorFunctionDirichletBC
    variable = v
    function_x = 4
    function_y = 8
    boundary = 'top'
  []
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 10
  dt = 0.05
[]

[Outputs]
  execute_on = TIMESTEP_END
  exodus = true
[]

test/tests/misc/check_error/nodal_kernel_with_aux_var.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[NodalKernels]
  [./nope]
    type = TimeDerivativeNodalKernel
    variable = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/planar_hard2.i

# apply uniform stretches in x, y and z directions.
# let friction_angle = 60deg, friction_angle_residual=10deg, friction_angle_rate = 0.5E4
# With cohesion = C, friction_angle = phi, the
# algorithm should return to
# sigma_m = C*Cos(phi)/Sin(phi)
# Or, when T=C,
# phi = arctan(C/sigma_m)

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.04719755 # 60deg
    value_residual = 0.17453293 # 10deg
    rate = 0.5E4
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    shift = 1E-12
    use_custom_returnMap = true
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.0E7 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-12
    plastic_models = mc
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = planar_hard2
  exodus = false
  [./csv]
    type = CSV
    execute_on = timestep_end
    [../]
[]

modules/phase_field/test/tests/phase_field_crystal/PFCEnergyDensity/auxkernel.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  nz = 0
  xmax = 6
  ymax = 6
  zmax = 0
[]

[Variables]
  [./n]
    [./InitialCondition]
      type = RandomIC
      min = 0.0
      max = 0.1
    [../]
  [../]
  [./u]
    scaling = 1e2
  [../]
  [./v]
    scaling = 1e1
  [../]
[]

[AuxVariables]
  [./ed]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./edrff0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./edrff1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./edrff2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./ndot]
    type = TimeDerivative
    variable = n
  [../]
  [./n_bulk]
    type = CHBulkPFCTrad
    variable = n
  [../]
  [./u_term]
    type = MatDiffusion
    variable = n
    v = u
    diffusivity = C2
  [../]
  [./v_term]
    type = MatDiffusion
    variable = n
    v = v
    diffusivity = C4
  [../]
  [./u_rctn]
    type = Reaction
    variable = u
  [../]
  [./u_gradn]
    type = LaplacianSplit
    variable = u
    c = n
  [../]
  [./v_rctn]
    type = Reaction
    variable = v
  [../]
  [./v_gradu]
    type = LaplacianSplit
    variable = v
    c = u
  [../]
[]

[AuxKernels]
  [./Energy_n]
    type = PFCEnergyDensity
    execute_on = 'initial timestep_end'
    variable = ed
    v = 'n u v'
  [../]

  [./Energy_rff0]
    type = PFCRFFEnergyDensity
    execute_on = 'initial timestep_end'
    variable = edrff0
    log_approach = tolerance
    v = 'n u v'
  [../]
  [./Energy_rff1]
    type = PFCRFFEnergyDensity
    execute_on = 'initial timestep_end'
    variable = edrff1
    log_approach = cancelation
    v = 'n u v'
  [../]
  [./Energy_rff2]
    type = PFCRFFEnergyDensity
    execute_on = 'initial timestep_end'
    variable = edrff2
    log_approach = expansion
    v = 'n u v'
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./PFCTrad]
    type = PFCTradMaterial
    order = FOURTH
  [../]
[]

[Postprocessors]
  [./Total_free_energy]
    type = PFCElementEnergyIntegral
    variable = ed
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  active = 'SMP'
  [./SMP]
    type = SMP
    full = true
    off_diag_row = 'u n n v'
    off_diag_column = 'n u v u'
  [../]
  [./FDP]
    type = FDP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  # petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  # petsc_options_value = 'hypre boomeramg 101'
  # petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  # petsc_options_value = 'asm         101   preonly   lu      1'
  petsc_options_iname = '-pc_type '
  petsc_options_value = 'lu '

  l_max_its = 100
  l_tol = 1e-04
  nl_rel_tol = 1e-09
  nl_abs_tol = 1e-11

  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/xfem/test/tests/second_order_elements/square_branch_quad8_2d.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD8
[]

[UserObjects]
  [./line_seg_cut_set_uo]
    type = LineSegmentCutSetUserObject
    cut_data = '-1.0000e-10   6.6340e-01   6.6340e-01  -1.0000e-10  0.0  1.0
                 3.3120e-01   3.3200e-01   1.0001e+00   3.3200e-01  1.0  2.0'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    planar_formulation = PLANE_STRAIN
  [../]
[]

[Functions]
  [./right_disp_x]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
  [./top_disp_y]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionDirichletBC
    boundary = 1
    variable = disp_x
    function = right_disp_x
  [../]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = top_disp_y
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.2
  num_steps = 5000
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/solid_mechanics/test/tests/material_limit_time_step/elas_plas/nafems_nl1_lim.i

#
# Tests material model IsotropicPlasticity with material based time stepper
# Boundary conditions from NAFEMS test NL1
#
[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  order = FIRST
  family = LAGRANGE
  volumetric_locking_correction = true
[]

[Mesh]#Comment
  file = one_elem2.e
  displacements = 'disp_x disp_y'
[] # Mesh

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[] # Variables

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_eff]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./tot_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[] # AuxVariables

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]
  [./plastic_strain_eff]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = plastic_strain_eff
  [../]
  [./tot_strain_yy]
    type = MaterialTensorAux
    tensor = total_strain
    variable = tot_strain_yy
    index = 1
  [../]
[] # AuxKernels

[Functions]
  [./appl_dispx]
    type = PiecewiseLinear
    x = '0   1.0   2.0   3.0  4.0   5.0  6.0  7.0  8.0'
    y = '0.0 0.25e-4 0.50e-4 0.50e-4 0.50e-4 0.25e-4 0.0 0.0 0.0'
  [../]
  [./appl_dispy]
    type = PiecewiseLinear
    x = '0   1.0   2.0   3.0  4.0   5.0  6.0  7.0  8.0'
    y = '0.0 0.0  0.0 0.25e-4 0.50e-4 0.50e-4 0.50e-4  0.25e-4 0.0 '
  [../]
[]

[BCs]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 101
    value = 0.0
  [../]
  [./origin_x]
    type = DirichletBC
    variable = disp_x
    boundary = 103
    value = 0.0
  [../]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 102
    value = 0.0
  [../]
  [./origin_y]
    type = DirichletBC
    variable = disp_y
    boundary = 103
    value = 0.0
  [../]
  [./top_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 1
    function = appl_dispy
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 2
    function = appl_dispx
  [../]
[] # BCs

[Materials]
  [./stiffStuff1]
    type = SolidModel
    block = 1
    youngs_modulus = 250e9
    poissons_ratio = 0.25
    constitutive_model = combined
    formulation = NonlinearPlaneStrain
    large_strain = true
  [../]
  [./combined]
    type = CombinedCreepPlasticity
    block = 1
    submodels = 'isoplas'
    absolute_tolerance = 1e-8
  [../]
  [./isoplas]
    type = IsotropicPlasticity
    block = 1
    yield_stress = 5e6
    hardening_constant = 0.0
    relative_tolerance = 1e-20
    absolute_tolerance = 1e-8
    max_inelastic_increment = 0.000001
  [../]
[] # Materials

[Executioner]
  type = Transient
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 20

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.1
    time_t = '1.0  2.0  3.0  4.0  5.0  6.0  7.0  8.0'
    time_dt = '0.1 0.1  0.1  0.1  0.1  0.1  0.1  0.1'
    optimal_iterations = 30
    iteration_window = 9
    growth_factor = 2.0
    cutback_factor = 0.5
    timestep_limiting_postprocessor = matl_ts_min
  [../]

  start_time = 0.0
  num_steps = 1000
  end_time = 8.0
[] # Executioner

[Postprocessors]
  [./matl_ts_min]
    type = MaterialTimeStepPostprocessor
  [../]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./vonmises]
    type = ElementAverageValue
    variable = vonmises
  [../]
  [./el_strain_yy]
    type = ElementAverageValue
    variable = elastic_strain_yy
  [../]
  [./plas_strain_eff]
    type = ElementAverageValue
    variable = plastic_strain_eff
  [../]
  [./tot_strain_yy]
    type = ElementAverageValue
    variable = tot_strain_yy
  [../]
  [./disp_x1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_x
  [../]
  [./disp_x4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_x
  [../]
  [./disp_y1]
    type = NodalVariableValue
    nodeid = 0
    variable = disp_y
  [../]
  [./disp_y4]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  [./console]
    type = Console
    output_linear = true
  [../]
[] # Outputs

modules/tensor_mechanics/test/tests/thermal_expansion/ad_constant_expansion_stress_free_temp.i

# This test involves only thermal expansion strains on a 2x2x2 cube of approximate
# steel material; however, in this case the stress free temperature of the material
# has been set to 200K so that there is an initial delta temperature of 100K.

# An initial temperature of 300K is given for the material,
# and an auxkernel is used to calculate the temperature in the entire cube to
# raise the temperature each time step.  The final temperature is 675K
# The thermal strain increment should therefore be
#     (675K - 300K) * 1.3e-5 1/K + 100K * 1.3e-5 1/K = 6.175e-3 m/m.

# This test uses a start up step to identify problems in the calculation of
# eigenstrains with a stress free temperature that is different from the initial
# value of the temperature in the problem

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./temp]
    initial_condition = 300.0
  [../]
[]

[AuxVariables]
  [./eigenstrain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eigenstrain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./eigenstrain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./total_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t*(5000.0)+300.0
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = SMALL
        incremental = true
        add_variables = true
        eigenstrain_names = eigenstrain
        use_automatic_differentiation = true
      [../]
    [../]
  [../]
[]

[Kernels]
  [./temp]
    type = Diffusion
    variable = temp
  [../]
[]

[AuxKernels]
  [./eigenstrain_yy]
    type = RankTwoAux
    rank_two_tensor = eigenstrain
    variable = eigenstrain_yy
    index_i = 1
    index_j = 1
    execute_on = 'initial timestep_end'
  [../]
  [./eigenstrain_xx]
    type = RankTwoAux
    rank_two_tensor = eigenstrain
    variable = eigenstrain_xx
    index_i = 0
    index_j = 0
    execute_on = 'initial timestep_end'
  [../]
  [./eigenstrain_zz]
    type = RankTwoAux
    rank_two_tensor = eigenstrain
    variable = eigenstrain_zz
    index_i = 2
    index_j = 2
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_yy
    index_i = 1
    index_j = 1
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_xx
    index_i = 0
    index_j = 0
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = total_strain_zz
    index_i = 2
    index_j = 2
    execute_on = 'initial timestep_end'
  [../]
[]

[BCs]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp]
    type = FunctionDirichletBC
    variable = temp
    function = temperature_load
    boundary = 'left right'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ADComputeThermalExpansionEigenstrain
    stress_free_temperature = 200
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = -0.0125
  n_startup_steps = 1
  end_time = 0.075
  dt = 0.0125
  dtmin = 0.0001
[]

[Outputs]
  exodus = true
[]

[Postprocessors]
  [./eigenstrain_xx]
    type = ElementAverageValue
    variable = eigenstrain_xx
    execute_on = 'initial timestep_end'
  [../]
  [./eigenstrain_yy]
    type = ElementAverageValue
    variable = eigenstrain_yy
    execute_on = 'initial timestep_end'
  [../]
  [./eigenstrain_zz]
    type = ElementAverageValue
    variable = eigenstrain_zz
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_xx]
    type = ElementAverageValue
    variable = total_strain_xx
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_yy]
    type = ElementAverageValue
    variable = total_strain_yy
    execute_on = 'initial timestep_end'
  [../]
  [./total_strain_zz]
    type = ElementAverageValue
    variable = total_strain_zz
    execute_on = 'initial timestep_end'
  [../]
  [./temperature]
    type = AverageNodalVariableValue
    variable = temp
    execute_on = 'initial timestep_end'
  [../]
[]

modules/combined/test/tests/normalized_penalty/normalized_penalty.i

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = normalized_penalty.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Functions]
  [./left_x]
    type = PiecewiseLinear
    x = '0 1 2'
    y = '0 0.02 0'
  [../]
[]

[AuxVariables]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    generate_output = 'stress_xx'
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  []
[]

[Contact]
  [./m3_s2]
    master = 3
    slave = 2
    penalty = 1e10
    normalize_penalty = true
    formulation = penalty
    tangential_tolerance = 1e-3
    system = Constraint
  [../]
[]

[BCs]
  [./left_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 1
    function = left_x
  [../]

  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = '1 2 3 4'
    value = 0.0
  [../]

  [./right]
    type = DirichletBC
    variable = disp_x
    boundary = '3 4'
    value = 0
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2 3 4 1000'
    youngs_modulus = 3e8
    poissons_ratio = 0.0
  [../]
  [./stiffStuff1_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2 3 4 1000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-12
  nl_abs_tol = 5e-8

  l_max_its = 100
  nl_max_its = 10
  dt = 0.5
  num_steps = 4
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/uni_axial1.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  # back = zmin
  # front = zmax
  # bottom = ymin
  # top = ymax
  # left = xmin
  # right = xmax
  [./xmin_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = '0'
  [../]
  [./ymin_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = '0'
  [../]
  [./zmin_zzero]
    type = DirichletBC
    variable = disp_z
    boundary = 'back'
    value = '0'
  [../]
  [./zmax_disp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front'
    function = '-1E-3*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./mc_int]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10E6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0
    value_residual = 0.6981317 # 40deg
    rate = 10000
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 0
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-10
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '5.77E10 3.85E10' # young = 100Gpa, poisson = 0.3
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-10
    plastic_models = mc
    max_NR_iterations = 1000
    debug_fspb = crash
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]


[Executioner]
  end_time = 0.5
  dt = 0.05
  solve_type = PJFNK  # cannot use NEWTON because we are using ComputeFiniteStrain, and hence the Jacobian contributions will not be correct, even though ComputeMultiPlasticityStress will compute the correct consistent tangent operator for small strains
  type = Transient

  line_search = 'none'
  nl_rel_tol = 1E-10
  l_tol = 1E-3
  l_max_its = 200
  nl_max_its = 10

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]



[Outputs]
  file_base = uni_axial1
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/porous_flow/test/tests/dirackernels/injection_with_plasticity.i

# Example: Injection into a uniform aquifer 10 x 10 x 5 km
# Drucker-Prager deformation
# Darcy flow
gravity = -9.81
solid_density = 2350
fluid_density = 1000
porosity0 = 0.1
[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = 0
  xmax = 1e4
  ymin = 0
  ymax = 1e4
  zmax = 0
  zmin = -5e3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 ${gravity}'
  displacements = 'disp_x disp_y disp_z'
  strain_at_nearest_qp = true
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0 # Not doing a thermal simulation
      bulk_modulus = 2E9
      density0 = ${fluid_density}
      viscosity = 5E-4
    [../]
  [../]
[]

[PorousFlowFullySaturated]
  coupling_type = HydroMechanical
  porepressure = pp
  dictator_name = dictator
  fp = simple_fluid
  add_darcy_aux = false
  add_stress_aux = false
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pp]
    scaling = 1E6
    [./InitialCondition]
      type = FunctionIC
      function = ini_pp
    [../]
  [../]
[]

[Functions]
  [./ini_stress]
    type = ParsedFunction
    value = '-${gravity} * z * (${solid_density} - ${fluid_density}) * (1.0 - ${porosity0})'  # initial effective stress that should result from weight force
  [../]

  [./ini_pp]
    type = ParsedFunction
    value = '${gravity} * z * ${fluid_density} + 1E5'
  [../]
[]

[BCs]
  [./p_top]
    type = FunctionDirichletBC
    variable = pp
    boundary = front
    function = ini_pp
  [../]

  [./x_roller]
    type = DirichletBC
    variable = disp_x
    boundary = 'left right'
    value = 0
  [../]
  [./y_roller]
    type = DirichletBC
    variable = disp_y
    boundary = 'top bottom'
    value = 0
  [../]
  [./z_confined]
    type = DirichletBC
    variable = disp_z
    boundary = 'back front'
    value = 0
  [../]
[]

[UserObjects]
  [./pls_total_outflow_mass]
    type = PorousFlowSumQuantity
  [../]

  # Cohesion
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 6.0E6
  [../]

  # Friction angle
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35.0
    convert_to_radians = true
  [../]

  # Dilation angle
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 2
    convert_to_radians = true
  [../]

  # Drucker-Prager objects
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-6
  [../]

  # Tensile strength
  [./tens]
    type = TensorMechanicsHardeningConstant
    value = 3.0E6
  [../]

  # Compressive strength (cap on yield envelope)
  [./compr_all]
    type = TensorMechanicsHardeningConstant
    value = 1E10
  [../]
[]

[Materials]
  [./strain]
    type = ComputeIncrementalSmallStrain
    eigenstrain_names = eigenstrain_all
  [../]

  [./eigenstrain_all]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = 'ini_stress 0 0  0 ini_stress 0  0 0 ini_stress'
    eigenstrain_name = eigenstrain_all
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 3.3333E9
    shear_modulus = 2.5E9
  [../]

  [./dp_mat]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = tens
    compressive_strength = compr_all
    smoothing_tol = 1E5
    yield_function_tol = 1E-3
    tip_smoother = 0
  [../]

  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = dp_mat
  [../]

  # Permeability
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-13 0 0  0 1E-13 0  0 0 1E-13'
  [../]

  # Porosity
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = ${porosity0}
    biot_coefficient = 1.0
    solid_bulk = 1.0 # Required but irrelevant when biot_coefficient is unity
    mechanical = true
    fluid = true
  [../]

  # Density of saturated rock
  [./density]
    type = PorousFlowTotalGravitationalDensityFullySaturatedFromPorosity
    rho_s = ${solid_density}
  [../]
[]

[DiracKernels]
  [./pls]
    type = PorousFlowPolyLineSink
    variable = pp
    SumQuantityUO = pls_total_outflow_mass
    point_file = two_nodes.bh
    function_of = pressure
    fluid_phase = 0
    p_or_t_vals = '0 1E7'
    fluxes = '-1.59 -1.59'
  [../]
[]

[Preconditioning]
  [./usual]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  solve_type = Newton
  type = Transient
  dt = 1E6
  end_time = 1E6
  nl_rel_tol = 1E-7
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/examples/coal_mining/coarse.i

# Strata deformation and fracturing around a coal mine - 3D model
#
# A "half model" is used.  The mine is 400m deep and
# just the roof is studied (-400<=z<=0).  The mining panel
# sits between 0<=x<=150, and 0<=y<=1000, so this simulates
# a coal panel that is 300m wide and 1000m long.  The outer boundaries
# are 1km from the excavation boundaries.
#
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions for this simulation are:
#  - disp_x = 0 at x=0 and x=1150
#  - disp_y = 0 at y=-1000 and y=1000
#  - disp_z = 0 at z=-400, but there is a time-dependent
#               Young's modulus that simulates excavation
#  - wc_x = 0 at y=-1000 and y=1000
#  - wc_y = 0 at x=0 and x=1150
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa.  The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = 0.025*z MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg.  The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 3 MPa
# MC friction angle = 37 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
#
[Mesh]
  [file]
    type = FileMeshGenerator
    file = mesh/coarse.e
  []
  [./xmin]
    input = file
    type = SideSetsAroundSubdomainGenerator
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    new_boundary = xmin
    normal = '-1 0 0'
  [../]
  [./xmax]
    input = xmin
    type = SideSetsAroundSubdomainGenerator
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    new_boundary = xmax
    normal = '1 0 0'
  [../]
  [./ymin]
    input = xmax
    type = SideSetsAroundSubdomainGenerator
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    new_boundary = ymin
    normal = '0 -1 0'
  [../]
  [./ymax]
    input = ymin
    type = SideSetsAroundSubdomainGenerator
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    new_boundary = ymax
    normal = '0 1 0'
  [../]
  [./zmax]
    input = ymax
    type = SideSetsAroundSubdomainGenerator
    block = 16
    new_boundary = zmax
    normal = '0 0 1'
  [../]
  [./zmin]
    input = zmax
    type = SideSetsAroundSubdomainGenerator
    block = 2
    new_boundary = zmin
    normal = '0 0 -1'
  [../]
  [./excav]
    type = SubdomainBoundingBoxGenerator
    input = zmin
    block_id = 1
    bottom_left = '0 0 -400'
    top_right = '150 1000 -397'
  [../]
  [./roof]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    input = excav
    new_boundary = roof
    normal = '0 0 1'
  [../]
[]

[GlobalParams]
  perform_finite_strain_rotations = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_y
    component = 1
  [../]
  [./gravity]
    type = Gravity
    use_displaced_mesh = false
    variable = disp_z
    value = -10E-6 # remember this is in MPa
  [../]
[]


[AuxVariables]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_shear]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_internal_parameter
    variable = mc_shear
  [../]
  [./mc_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = mc_plastic_internal_parameter
    variable = mc_tensile
  [../]
  [./wp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_internal_parameter
    variable = wp_shear
  [../]
  [./wp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_internal_parameter
    variable = wp_tensile
  [../]
  [./mc_shear_f]
    type = MaterialStdVectorAux
    index = 6
    property = mc_plastic_yield_function
    variable = mc_shear_f
  [../]
  [./mc_tensile_f]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_yield_function
    variable = mc_tensile_f
  [../]
  [./wp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_yield_function
    variable = wp_shear_f
  [../]
  [./wp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_yield_function
    variable = wp_tensile_f
  [../]
[]



[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'xmin xmax'
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'ymin ymax'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = zmin
    value = 0.0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = 'ymin ymax'
    value = 0.0
  [../]
  [./no_wc_y]
    type = DirichletBC
    variable = wc_y
    boundary = 'xmin xmax'
    value = 0.0
  [../]
  [./roof]
    type = StickyBC
    variable = disp_z
    min_value = -3.0
    boundary = roof
  [../]
[]

[Functions]
  [./ini_xx]
    type = ParsedFunction
    value = '0.8*2500*10E-6*z'
  [../]
  [./ini_zz]
    type = ParsedFunction
    value = '2500*10E-6*z'
  [../]
  [./excav_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval slope'
    vals = '17.0   0    1000.0 1E-9 1 60'
    # excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
    # slope is the distance over which the modulus reduces from maxval to minval
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
  [../]
  [./density_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval'
    vals = '17.0   0    1000.0 0 2500'
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
  [../]
[]

[UserObjects]
  [./mc_coh_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 2.99 # MPa
    value_residual = 3.01 # MPa
    rate = 1.0
  [../]
  [./mc_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.65 # 37deg
  [../]
  [./mc_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.15 # 8deg
  [../]

  [./mc_tensile_str_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0 # MPa
    value_residual = 1.0 # MPa
    rate = 1.0
  [../]
  [./mc_compressive_str]
    type = TensorMechanicsHardeningCubic
    value_0 = 100 # Large!
    value_residual = 100
    internal_limit = 0.1
  [../]

  [./wp_coh_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_tan_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.36 # 20deg
  [../]
  [./wp_tan_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.18 # 10deg
  [../]

  [./wp_tensile_str_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_compressive_str_soften]
    type = TensorMechanicsHardeningCubic
    value_0 = 100
    value_residual = 1
    internal_limit = 1.0
  [../]
[]

[Materials]
  [./elasticity_tensor_0]
    type = ComputeLayeredCosseratElasticityTensor
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
  [../]
  [./elasticity_tensor_1]
    type = ComputeLayeredCosseratElasticityTensor
    block = 1
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
    elasticity_tensor_prefactor = excav_sideways
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    eigenstrain_name = ini_stress
    initial_stress = 'ini_xx 0 0  0 ini_xx 0  0 0 ini_zz'
  [../]

  [./stress_0]
    type = ComputeMultipleInelasticCosseratStress
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    inelastic_models = 'mc wp'
    cycle_models = true
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./stress_1]
    type = ComputeMultipleInelasticCosseratStress
    block = 1
    inelastic_models = ''
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedMohrCoulombCosseratStressUpdate
    warn_about_precision_loss = false
    host_youngs_modulus = 8E3
    host_poissons_ratio = 0.25
    base_name = mc
    tensile_strength = mc_tensile_str_strong_harden
    compressive_strength = mc_compressive_str
    cohesion = mc_coh_strong_harden
    friction_angle = mc_fric
    dilation_angle = mc_dil
    max_NR_iterations = 100000
    smoothing_tol = 0.1 # MPa  # Must be linked to cohesion
    yield_function_tol = 1E-9 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    warn_about_precision_loss = false
    base_name = wp
    cohesion = wp_coh_harden
    tan_friction_angle = wp_tan_fric
    tan_dilation_angle = wp_tan_dil
    tensile_strength = wp_tensile_str_harden
    compressive_strength = wp_compressive_str_soften
    max_NR_iterations = 10000
    tip_smoother = 0.1
    smoothing_tol = 0.1 # MPa  # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0E-3
  [../]


  [./density_0]
    type = GenericConstantMaterial
    block = '2 3 4 5 6 7 8 9 10 11 12 13 14 15 16'
    prop_names = density
    prop_values = 2500
  [../]
  [./density_1]
    type = GenericFunctionMaterial
    block = 1
    prop_names = density
    prop_values = density_sideways
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Postprocessors]
  [./min_roof_disp]
    type = NodalExtremeValue
    boundary = roof
    value_type = min
    variable = disp_z
  [../]
  [./min_surface_disp]
    type = NodalExtremeValue
    boundary = zmax
    value_type = min
    variable = disp_z
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options = '-snes_converged_reason'
  petsc_options_iname = '-pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' bjacobi  gmres     200'

  line_search = bt

  nl_abs_tol = 1e-3
  nl_rel_tol = 1e-5

  l_max_its = 30
  nl_max_its = 1000

  start_time = 0.0
  dt = 0.5 # this gives min(disp_z)=-4.3, use dt=0.0625 if you want to restrict disp_z>=-3.2
  end_time = 17.0

[]

[Outputs]
  interval = 1
  print_linear_residuals = false
  exodus = true
  csv = true
  console = true
[]

modules/porous_flow/examples/tutorial/11.i

# Two-phase borehole injection problem
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    input = annular
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pwater pgas T disp_x disp_y'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1E-6
    m = 0.6
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  gravity = '0 0 0'
  biot_coefficient = 1.0
  PorousFlowDictator = dictator
[]

[Variables]
  [./pwater]
    initial_condition = 20E6
  [../]
  [./pgas]
    initial_condition = 20.1E6
  [../]
  [./T]
    initial_condition = 330
    scaling = 1E-5
  [../]
  [./disp_x]
    scaling = 1E-5
  [../]
  [./disp_y]
    scaling = 1E-5
  [../]
[]

[Kernels]
  [./mass_water_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    use_displaced_mesh = false
    variable = pwater
  [../]
  [./flux_water]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    use_displaced_mesh = false
    variable = pwater
  [../]
  [./vol_strain_rate_water]
    type = PorousFlowMassVolumetricExpansion
    fluid_component = 0
    use_displaced_mesh = false
    variable = pwater
  [../]
  [./mass_co2_dot]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    use_displaced_mesh = false
    variable = pgas
  [../]
  [./flux_co2]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    use_displaced_mesh = false
    variable = pgas
  [../]
  [./vol_strain_rate_co2]
    type = PorousFlowMassVolumetricExpansion
    fluid_component = 1
    use_displaced_mesh = false
    variable = pgas
  [../]
  [./energy_dot]
    type = PorousFlowEnergyTimeDerivative
    use_displaced_mesh = false
    variable = T
  [../]
  [./advection]
    type = PorousFlowHeatAdvection
    use_displaced_mesh = false
    variable = T
  [../]
  [./conduction]
    type = PorousFlowHeatConduction
    use_displaced_mesh = false
    variable = T
  [../]
  [./vol_strain_rate_heat]
    type = PorousFlowHeatVolumetricExpansion
    use_displaced_mesh = false
    variable = T
  [../]
  [./grad_stress_x]
    type = StressDivergenceTensors
    temperature = T
    variable = disp_x
    thermal_eigenstrain_name = thermal_contribution
    use_displaced_mesh = false
    component = 0
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    variable = disp_x
    use_displaced_mesh = false
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    temperature = T
    variable = disp_y
    thermal_eigenstrain_name = thermal_contribution
    use_displaced_mesh = false
    component = 1
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    variable = disp_y
    use_displaced_mesh = false
    component = 1
  [../]
[]

[AuxVariables]
  [./disp_z]
  [../]
  [./effective_fluid_pressure]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./mass_frac_phase0_species0]
    initial_condition = 1 # all water in phase=0
  [../]
  [./mass_frac_phase1_species0]
    initial_condition = 0 # no water in phase=1
  [../]
  [./sgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./swater]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_rr]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_tt]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./porosity]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./effective_fluid_pressure]
    type = ParsedAux
    args = 'pwater pgas swater sgas'
    function = 'pwater * swater + pgas * sgas'
    variable = effective_fluid_pressure
  [../]
  [./swater]
    type = PorousFlowPropertyAux
    variable = swater
    property = saturation
    phase = 0
    execute_on = timestep_end
  [../]
  [./sgas]
    type = PorousFlowPropertyAux
    variable = sgas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./stress_rr]
    type = RankTwoScalarAux
    variable = stress_rr
    rank_two_tensor = stress
    scalar_type = RadialStress
    point1 = '0 0 0'
    point2 = '0 0 1'
    execute_on = timestep_end
  [../]
  [./stress_tt]
    type = RankTwoScalarAux
    variable = stress_tt
    rank_two_tensor = stress
    scalar_type = HoopStress
    point1 = '0 0 0'
    point2 = '0 0 1'
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./porosity]
    type = PorousFlowPropertyAux
    variable = porosity
    property = porosity
    execute_on = timestep_end
  [../]
[]


[BCs]
  [./roller_tmax]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = dmax
  [../]
  [./roller_tmin]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = dmin
  [../]
  [./pinned_top_bottom_x]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'top bottom'
  [../]
  [./pinned_top_bottom_y]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'top bottom'
  [../]
  [./cavity_pressure_x]
    type = Pressure
    boundary = injection_area
    variable = disp_x
    component = 0
    postprocessor = constrained_effective_fluid_pressure_at_wellbore
    use_displaced_mesh = false
  [../]
  [./cavity_pressure_y]
    type = Pressure
    boundary = injection_area
    variable = disp_y
    component = 1
    postprocessor = constrained_effective_fluid_pressure_at_wellbore
    use_displaced_mesh = false
  [../]

  [./cold_co2]
    type = DirichletBC
    boundary = injection_area
    variable = T
    value = 290  # injection temperature
    use_displaced_mesh = false
  [../]
  [./constant_co2_injection]
    type = PorousFlowSink
    boundary = injection_area
    variable = pgas
    fluid_phase = 1
    flux_function = -1E-4
    use_displaced_mesh = false
  [../]

  [./outer_water_removal]
    type = PorousFlowPiecewiseLinearSink
    boundary = rmax
    variable = pwater
    fluid_phase = 0
    pt_vals = '0 1E9'
    multipliers = '0 1E8'
    PT_shift = 20E6
    use_mobility = true
    use_relperm = true
    use_displaced_mesh = false
  [../]
  [./outer_co2_removal]
    type = PorousFlowPiecewiseLinearSink
    boundary = rmax
    variable = pgas
    fluid_phase = 1
    pt_vals = '0 1E9'
    multipliers = '0 1E8'
    PT_shift = 20.1E6
    use_mobility = true
    use_relperm = true
    use_displaced_mesh = false
  [../]
[]

[Modules]
  [./FluidProperties]
    [./true_water]
      type = Water97FluidProperties
    [../]
    [./tabulated_water]
      type = TabulatedFluidProperties
      fp = true_water
      temperature_min = 275
      pressure_max = 1E8
      interpolated_properties = 'density viscosity enthalpy internal_energy'
      fluid_property_file = water97_tabulated_11.csv
    [../]
    [./true_co2]
      type = CO2FluidProperties
    [../]
    [./tabulated_co2]
      type = TabulatedFluidProperties
      fp = true_co2
      temperature_min = 275
      pressure_max = 1E8
      interpolated_properties = 'density viscosity enthalpy internal_energy'
      fluid_property_file = co2_tabulated_11.csv
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = T
  [../]
  [./saturation_calculator]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = pgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'mass_frac_phase0_species0 mass_frac_phase1_species0'
  [../]
  [./water]
    type = PorousFlowSingleComponentFluid
    fp = tabulated_water
    phase = 0
  [../]
  [./co2]
    type = PorousFlowSingleComponentFluid
    fp = tabulated_co2
    phase = 1
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 4
    s_res = 0.1
    sum_s_res = 0.2
    phase = 0
  [../]
  [./relperm_co2]
    type = PorousFlowRelativePermeabilityBC
    nw_phase = true
    lambda = 2
    s_res = 0.1
    sum_s_res = 0.2
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    thermal = true
    porosity_zero = 0.1
    reference_temperature = 330
    reference_porepressure = 20E6
    thermal_expansion_coeff = 15E-6 # volumetric
    solid_bulk = 8E9 # unimportant since biot = 1
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityKozenyCarman
    block = aquifer
    poroperm_function = kozeny_carman_phi0
    phi0 = 0.1
    n = 2
    m = 2
    k0 = 1E-12
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityKozenyCarman
    block = caps
    poroperm_function = kozeny_carman_phi0
    phi0 = 0.1
    n = 2
    m = 2
    k0 = 1E-15
    k_anisotropy = '1 0 0  0 1 0  0 0 0.1'
  [../]
  [./rock_thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '2 0 0  0 2 0  0 0 2'
  [../]
  [./rock_internal_energy]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1100
    density = 2300
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 5E9
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeSmallStrain
    eigenstrain_names = 'thermal_contribution initial_stress'
  [../]
  [./thermal_contribution]
    type = ComputeThermalExpansionEigenstrain
    temperature = T
    thermal_expansion_coeff = 5E-6 # this is the linear thermal expansion coefficient
    eigenstrain_name = thermal_contribution
    stress_free_temperature = 330
  [../]
  [./initial_strain]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '20E6 0 0  0 20E6 0  0 0 20E6'
    eigenstrain_name = initial_stress
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./effective_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./volumetric_strain]
    type = PorousFlowVolumetricStrain
  [../]
[]

[Postprocessors]
  [./effective_fluid_pressure_at_wellbore]
    type = PointValue
    variable = effective_fluid_pressure
    point = '1 0 0'
    execute_on = timestep_begin
    use_displaced_mesh = false
  [../]
  [./constrained_effective_fluid_pressure_at_wellbore]
    type = FunctionValuePostprocessor
    function = constrain_effective_fluid_pressure
    execute_on = timestep_begin
  [../]
[]

[Functions]
  [./constrain_effective_fluid_pressure]
    type = ParsedFunction
    vars = effective_fluid_pressure_at_wellbore
    vals = effective_fluid_pressure_at_wellbore
    value = 'max(effective_fluid_pressure_at_wellbore, 20E6)'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E3
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1E3
    growth_factor = 1.2
    optimal_iterations = 10
  [../]
  nl_abs_tol = 1E-7
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/theis/th21.i

# two-phase, fully-saturated
# production
[Mesh]
  type = FileMesh
  file = th01_input.e
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '0.5 1 2 10'
    x = '0 1 10 100'
  [../]
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 2E6
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1E-5
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.0
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGwater]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]
  [./SUPGgas]
    type = RichardsSUPGstandard
    p_SUPG = 1E-5
  [../]

  [./total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[ICs]
  [./water_ic]
    type = FunctionIC
    variable = pwater
    function = initial_pressure
  [../]
  [./gas_ic]
    type = FunctionIC
    variable = pgas
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffWater
    pressure_vars = 'pwater pgas'
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsPolyLineSink
    pressures = '-1E9 1E9'
    fluxes = '200 200'
    point_file = th01.points
    SumQuantityUO = total_outflow_mass
    variable = pwater
  [../]
[]


[Postprocessors]
  [./flow_report]
    type = RichardsPlotQuantity
    uo = total_outflow_mass
  [../]
  [./p50]
    type = PointValue
    variable = pwater
    point = '50 0 0'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E5
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 1
    mat_porosity = 0.1
    mat_permeability = '1E-10 0 0  0 1E-10 0  0 0 1E-10'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 1E-5'
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]



[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-6 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 100
  solve_type = NEWTON

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]


[]

[Outputs]
  file_base = th21
  csv = true
[]

modules/combined/test/tests/poro_mechanics/terzaghi.i

# Terzaghi's problem of consolodation of a drained medium
#
# A saturated soil sample sits in a bath of water.
# It is constrained on its sides, and bottom.
# Its sides and bottom are also impermeable.
# Initially it is unstressed.
# A normal stress, q, is applied to the soil's top.
# The soil then slowly compresses as water is squeezed
# out from the sample from its top (the top BC for
# the porepressure is porepressure = 0).
#
# See, for example.  Section 2.2 of the online manuscript
# Arnold Verruijt "Theory and Problems of Poroelasticity" Delft University of Technology 2013
# but note that the "sigma" in that paper is the negative
# of the stress in TensorMechanics
#
# Here are the problem's parameters, and their values:
# Soil height.  h = 10
# Soil's Lame lambda.  la = 2
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = 3
# Soil bulk modulus.  K = la + 2*mu/3 = 4
# Soil confined compressibility.  m = 1/(K + 4mu/3) = 0.125
# Soil bulk compliance.  1/K = 0.25
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Soil initial storativity, which is the reciprocal of the initial Biot modulus.  S = phi0/Kf + (alpha - phi0)(1 - alpha)/K = 0.0625
# Consolidation coefficient.  c = k/(S + alpha^2 m) = 13.95348837
# Normal stress on top.  q = 1
# Initial porepressure, resulting from instantaneous application of q, assuming corresponding instantaneous increase of porepressure (Note that this is calculated by MOOSE: we only need it for the analytical solution).  p0 = alpha*m*q/(S + alpha^2 m) = 0.69767442
# Initial vertical displacement (down is positive), resulting from instantaneous application of q (Note this is calculated by MOOSE: we only need it for the analytical solution).  uz0 = q*m*h*S/(S + alpha^2 m)
# Final vertical displacement (down in positive) (Note this is calculated by MOOSE: we only need it for the analytical solution).  uzinf = q*m*h
#
# The solution for porepressure is
# P = 4*p0/\pi \sum_{k=1}^{\infty} \frac{(-1)^{k-1}}{2k-1} \cos ((2k-1)\pi z/(2h)) \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))
# This series converges very slowly for ct/h^2 small, so in that domain
# P = p0 erf( (1-(z/h))/(2 \sqrt(ct/h^2)) )
#
# The degree of consolidation is defined as
# U = (uz - uz0)/(uzinf - uz0)
# where uz0 and uzinf are defined above, and
# uz = the vertical displacement of the top (down is positive)
# U = 1 - (8/\pi^2)\sum_{k=1}^{\infty} \frac{1}{(2k-1)^2} \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = 0
  zmax = 10
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  porepressure = porepressure
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./basefixed]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  [../]
  [./topdrained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = front
  [../]
  [./topload]
    type = NeumannBC
    variable = disp_z
    value = -1
    boundary = front
  [../]
[]


[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
    [./poro_x]
    type = PoroMechanicsCoupling
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PoroMechanicsCoupling
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PoroMechanicsCoupling
    variable = disp_z
    component = 2
  [../]
  [./poro_timederiv]
    type = PoroFullSatTimeDerivative
    variable = porepressure
  [../]
  [./darcy_flow]
    type = CoefDiffusion
    variable = porepressure
    coef = 1.5
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '2 3'
    # bulk modulus is lambda + 2*mu/3 = 2 + 2*3/3 = 4
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./poro_material]
    type = PoroFullSatMaterial
    porosity0 = 0.1
    biot_coefficient = 0.6
    solid_bulk_compliance = 0.25
    fluid_bulk_compliance = 0.125
    constant_porosity = true
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
  [../]
  [./p1]
    type = PointValue
    outputs = csv
    point = '0 0 1'
    variable = porepressure
  [../]
  [./p2]
    type = PointValue
    outputs = csv
    point = '0 0 2'
    variable = porepressure
  [../]
  [./p3]
    type = PointValue
    outputs = csv
    point = '0 0 3'
    variable = porepressure
  [../]
  [./p4]
    type = PointValue
    outputs = csv
    point = '0 0 4'
    variable = porepressure
  [../]
  [./p5]
    type = PointValue
    outputs = csv
    point = '0 0 5'
    variable = porepressure
  [../]
  [./p6]
    type = PointValue
    outputs = csv
    point = '0 0 6'
    variable = porepressure
  [../]
  [./p7]
    type = PointValue
    outputs = csv
    point = '0 0 7'
    variable = porepressure
  [../]
  [./p8]
    type = PointValue
    outputs = csv
    point = '0 0 8'
    variable = porepressure
  [../]
  [./p9]
    type = PointValue
    outputs = csv
    point = '0 0 9'
    variable = porepressure
  [../]
  [./p99]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = porepressure
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = disp_z
  [../]
  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.5*t<0.1,0.5*t,0.1)
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.0001
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = terzaghi
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/cyl_1/cyl1_template2_sm.i

#
# This input file is a template for both the frictionless and glued test
# variations for the current problem geometry. In order to create an input
# file to run outside the runtest framework, look at the tests file and add the
# appropriate input file lines from the cli_args line.
#

[Mesh]
  file = cyl1_mesh.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  maximum_lagrangian_update_iterations = 200
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-6
  l_max_its = 100
  nl_max_its = 1000
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-4
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-reduced-active-set.i

starting_point = .5

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1
[]

[Mesh]
  file = square-blocks-no-offset.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${starting_point}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [./disp_x]
    type = RANFSNormalMechanicalContact
    slave = 10
    master = 20
    variable = disp_x
    master_variable = disp_x
    component = x
  [../]
  [./disp_y]
    type = RANFSNormalMechanicalContact
    slave = 10
    master = 20
    variable = disp_y
    master_variable = disp_y
    component = y
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 40
    value = 0.0
  [../]
  [./topx]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 30
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 30
    function = '${starting_point} - t'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  dtmin = 1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -ksp_monitor_true_residual -snes_view'
  petsc_options_iname = '-mat_mffd_err -pc_type -pc_hypre_type'
  petsc_options_value = '1e-5          hypre    boomeramg'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'project'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  [exo]
    type = Exodus
    execute_on = 'nonlinear'
  []
  print_linear_residuals = false
  [dof]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
[]

test/tests/geomsearch/2d_moving_penetration/pl_test4nns.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_method = nodal_normal_based
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-10
  l_max_its = 10

  start_time = 0.0
  dt = 0.0125
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test4nns_out
  exodus = true
[]

[NodalNormals]
  boundary = 11
  corner_boundary = 20
[]

test/tests/multiapps/move_and_reset/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/simple_contact/sm/simple_contact_rz_test_sm.i

#
# The analytic solution is:
#   disp_x = -7e-5 * x
#   disp_y =  6e-5 * y
#   stress_xx = stress_zz = -100
#   stress_yy = stress_xy = 0
#
# Note: Run merged_rz.i to generate a solution to compare to that doesn't use contact.

[Mesh]
  file = contact_rz.e
  # PETSc < 3.5.0 requires the iteration patch_update_strategy to
  # avoid PenetrationLocator warnings, which are currently treated as
  # errors by the TestHarness.
  patch_update_strategy = 'iteration'
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Problem]
  coord_type = RZ
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 1'
    scale_factor = 100
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    penalty = 1e5
    system = constraint
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]

  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]

  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]

  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 10
    value = 0.0
  [../]

  [./Pressure]
    [./right_pressure]
      boundary = 4
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
    [../]
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    formulation = NonlinearRZ

    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stiffStuff2]
    type = Elastic
    formulation = NonlinearRZ

    block = 2

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type '
  petsc_options_value = 'lu       '

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-9

  l_max_its = 20
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/multi/three_surface22.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 1.7E-6m in y direction and 1.1E-6 in z direction.
# trial stress_yy = 1.7 and stress_zz = 1.1
#
# Then all yield functions will activate
# However, there is linear dependence.  SimpleTester0 will be rutned off.
# The algorithm will return to
# stress_yy=1.0 and stress_zz=0.5
# internal1=0.1, internal2=0.6


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1.7E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface22
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/phase_field/test/tests/reconstruction/1phase_evolution.i

#
# In this test we set the initial condition of a set of order parameters
# by pulling out the grain data from given EBSD data file ignoring the phase completely.
#

[Mesh]
  type = EBSDMesh
  filename = IN100_001_28x28_Marmot.txt
[]

[GlobalParams]
  op_num = 5
  var_name_base = gr
[]

[UserObjects]
  [./ebsd_reader]
    type = EBSDReader
  [../]
  [./ebsd]
    type = PolycrystalEBSD
    coloring_algorithm = bt
    ebsd_reader = ebsd_reader
    output_adjacency_matrix = true
  [../]
  [./grain_tracker]
    type = GrainTracker
    polycrystal_ic_uo = ebsd
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = ebsd
    [../]
  [../]
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxVariables]
  [./feature]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./bnds]
  [../]
[]

[AuxKernels]
  [./feature]
    type = EBSDReaderAvgDataAux
    variable = feature
    ebsd_reader = ebsd_reader
    grain_tracker = grain_tracker
    data_name = feature_id
    execute_on = 'initial timestep_end'
  [../]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'initial timestep_end'
  [../]
[]

[Materials]
  [./CuGrGr]
    # Material properties
    type = GBEvolution # Quantitative material properties for copper grain growth.  Dimensions are nm and ns
    block = 0 # Block ID (only one block in this problem)
    GBmob0 = 2.5e-6 #Mobility prefactor for Cu from Schonfelder1997
    GBenergy = 0.708 # GB energy in J/m^2
    Q = 0.23 #Activation energy for grain growth from Schonfelder 1997
    T = 500 # K   #Constant temperature of the simulation (for mobility calculation)
    wGB = 1 # nm    #Width of the diffuse GB
    #outputs = exodus
    length_scale = 1e-06
    time_scale = 1e-6
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 10
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test3nns.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_method = nodal_normal_based
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test3nns_out
  exodus = true
[]

[NodalNormals]
  boundary = 11
  corner_boundary = 20
[]

test/tests/transfers/multiapp_copy_transfer/multivariable_copy/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  # Create two variables
  [./u]
  [../]
  [./v]
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = sub.i
    execute_on = initial
  [../]
[]

[Transfers]
  # Transfer both variables by inputting a vector of their names
  [./from_sub]
    type = MultiAppCopyTransfer
    direction = from_multiapp
    source_variable = 'u v'
    variable = 'u v'
    multi_app = sub
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/examples/reservoir_model/field_model.i

# Field model generated using geophysical modelling tool

[Mesh]
  type = FileMesh
  file = field.e
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 -9.81'
  temperature_unit = Celsius
[]

[Variables]
  [porepressure]
    initial_condition = 20e6
  []
[]

[AuxVariables]
  [temperature]
    initial_condition = 50
  []
  [xnacl]
    initial_condition = 0.1
  []
  [porosity]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = poro
  []
  [permx_md]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permX
  []
  [permy_md]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permY
  []
  [permz_md]
    family = MONOMIAL
    order = CONSTANT
    initial_from_file_var = permZ
  []
  [permx]
    family = MONOMIAL
    order = CONSTANT
  []
  [permy]
    family = MONOMIAL
    order = CONSTANT
  []
  [permz]
    family = MONOMIAL
    order = CONSTANT
  []
[]

[AuxKernels]
  [permx]
    type = ParsedAux
    variable = permx
    args = permx_md
    function = '9.869233e-16*permx_md'
    execute_on = initial
  []
  [permy]
    type = ParsedAux
    variable = permy
    args = permy_md
    function = '9.869233e-16*permy_md'
    execute_on = initial
  []
  [permz]
    type = ParsedAux
    variable = permz
    args = permz_md
    function = '9.869233e-16*permz_md'
    execute_on = initial
  []
[]

[Kernels]
  [mass0]
    type = PorousFlowMassTimeDerivative
    variable = porepressure
  []
  [flux0]
    type = PorousFlowFullySaturatedDarcyFlow
    variable = porepressure
  []
[]

[UserObjects]
  [dictator]
    type = PorousFlowDictator
    porous_flow_vars = porepressure
    number_fluid_phases = 1
    number_fluid_components = 1
  []
[]

[Modules]
  [FluidProperties]
    [water]
      type = Water97FluidProperties
    []
    [watertab]
      type = TabulatedFluidProperties
      fp = water
      save_file = false
    []
  []
[]

[Materials]
  [temperature]
    type = PorousFlowTemperature
    temperature = temperature
  []
  [ps]
    type = PorousFlow1PhaseFullySaturated
    porepressure = porepressure
  []
  [massfrac]
    type = PorousFlowMassFraction
  []
  [brine]
    type = PorousFlowBrine
    compute_enthalpy = false
    compute_internal_energy = false
    xnacl = xnacl
    phase = 0
    water_fp = watertab
  []
  [porosity]
    type = PorousFlowPorosityConst
    porosity = porosity
  []
  [permeability]
    type = PorousFlowPermeabilityConstFromVar
    perm_xx = permx
    perm_yy = permy
    perm_zz = permz
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1e2
  end_time = 1e2
[]

[Outputs]
  execute_on = 'initial timestep_end'
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/1D_axisymmetric/axisymm_gps_small.i

# this test checks the asixymmetric 1D generalized plane strain formulation using incremental small strains

[GlobalParams]
  displacements = disp_x
  scalar_out_of_plane_strain = scalar_strain_yy
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = line.e
[]

[Variables]
  [./disp_x]
  [../]
  [./scalar_strain_yy]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    initial_condition = 580.0
  [../]
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '580 580 680'
  [../]
  [./disp_x]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 2e-6'
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./GeneralizedPlaneStrain]
      [./gps]
      [../]
    [../]
  [../]
[]

[AuxKernels]
  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./temp]
    type = FunctionAux
    variable = temp
    function = temp
    execute_on = 'timestep_begin'
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    boundary = 1
    value = 0
    variable = disp_x
  [../]
  [./disp_x]
    type = FunctionDirichletBC
    boundary = 2
    function = disp_x
    variable = disp_x
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 3600
    poissons_ratio = 0.2
  [../]

  [./strain]
    type = ComputeAxisymmetric1DSmallStrain
    eigenstrain_names = eigenstrain
    scalar_out_of_plane_strain = scalar_strain_yy
  [../]

  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-8
    temperature = temp
    stress_free_temperature = 580
    eigenstrain_name = eigenstrain
  [../]

  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  line_search = 'none'

  l_max_its = 50
  l_tol = 1e-6
  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10
  start_time = 0
  end_time = 2
  num_steps = 2
[]

[Outputs]
  exodus = true
  console = true
[]

modules/porous_flow/test/tests/poro_elasticity/mandel_basicthm.i

# using a BasicTHM Action
#
# Mandel's problem of consolodation of a drained medium
# Using the FullySaturatedDarcyBase and FullySaturatedFullySaturatedMassTimeDerivative kernels
# with multiply_by_density = false, so that this problem becomes linear
# Note the use of consistent_with_displaced_mesh = false in the calculation of volumetric strain
#
# A sample is in plane strain.
# -a <= x <= a
# -b <= y <= b
# It is squashed with constant force by impermeable, frictionless plattens on its top and bottom surfaces (at y=+/-b)
# Fluid is allowed to leak out from its sides (at x=+/-a)
# The porepressure within the sample is monitored.
#
# As is common in the literature, this is simulated by
# considering the quarter-sample, 0<=x<=a and 0<=y<=b, with
# impermeable, roller BCs at x=0 and y=0 and y=b.
# Porepressure is fixed at zero on x=a.
# Porepressure and displacement are initialised to zero.
# Then the top (y=b) is moved downwards with prescribed velocity,
# so that the total force that is inducing this downwards velocity
# is fixed.  The velocity is worked out by solving Mandel's problem
# analytically, and the total force is monitored in the simulation
# to check that it indeed remains constant.
#
# Here are the problem's parameters, and their values:
# Soil width.  a = 1
# Soil height.  b = 0.1
# Soil's Lame lambda.  la = 0.5
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = G = 0.75
# Soil bulk modulus.  K = la + 2*mu/3 = 1
# Drained Poisson ratio.  nu = (3K - 2G)/(6K + 2G) = 0.2
# Soil bulk compliance.  1/K = 1
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Biot modulus.  M = 1/(phi0/Kf + (alpha - phi0)(1 - alpha)/K) = 4.705882
# Undrained bulk modulus. Ku = K + alpha^2*M = 2.694118
# Undrained Poisson ratio.  nuu = (3Ku - 2G)/(6Ku + 2G) = 0.372627
# Skempton coefficient.  B = alpha*M/Ku = 1.048035
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Consolidation coefficient.  c = 2*k*B^2*G*(1-nu)*(1+nuu)^2/9/(1-nuu)/(nuu-nu) = 3.821656
# Normal stress on top.  F = 1
#
# The solution for porepressure and displacements is given in
# AHD Cheng and E Detournay "A direct boundary element method for plane strain poroelasticity" International Journal of Numerical and Analytical Methods in Geomechanics 12 (1988) 551-572.
# The solution involves complicated infinite series, so I shall not write it here

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 0.1
  zmin = 0
  zmax = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./roller_xmin]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left'
  [../]
  [./roller_ymin]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom'
  [../]
  [./plane_strain]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
  [./xmax_drained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = right
  [../]
  [./top_velocity]
    type = FunctionDirichletBC
    variable = disp_y
    function = top_velocity
    boundary = top
  [../]
[]

[Functions]
  [./top_velocity]
    type = PiecewiseLinear
    x = '0 0.002 0.006   0.014   0.03    0.046   0.062   0.078   0.094   0.11    0.126   0.142   0.158   0.174   0.19 0.206 0.222 0.238 0.254 0.27 0.286 0.302 0.318 0.334 0.35 0.366 0.382 0.398 0.414 0.43 0.446 0.462 0.478 0.494 0.51 0.526 0.542 0.558 0.574 0.59 0.606 0.622 0.638 0.654 0.67 0.686 0.702'
    y = '-0.041824842    -0.042730269    -0.043412712    -0.04428867     -0.045509181    -0.04645965     -0.047268246 -0.047974749      -0.048597109     -0.0491467  -0.049632388     -0.050061697      -0.050441198     -0.050776675     -0.051073238      -0.0513354 -0.051567152      -0.051772022     -0.051953128 -0.052113227 -0.052254754 -0.052379865 -0.052490464 -0.052588233 -0.052674662 -0.052751065 -0.052818606 -0.052878312 -0.052931093 -0.052977751 -0.053018997 -0.053055459 -0.053087691 -0.053116185 -0.053141373 -0.05316364 -0.053183324 -0.053200724 -0.053216106 -0.053229704 -0.053241725 -0.053252351 -0.053261745 -0.053270049 -0.053277389 -0.053283879 -0.053289615'
  [../]
[]

[AuxVariables]
  [./tot_force]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./tot_force]
    type = ParsedAux
    args = 'stress_yy porepressure'
    execute_on = timestep_end
    variable = tot_force
    function = '-stress_yy+0.6*porepressure'
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.0
      bulk_modulus = 8.0
      viscosity = 1.0
      density0 = 1.0
    [../]
  [../]
[]

[PorousFlowBasicTHM]
  coupling_type = HydroMechanical
  displacements = 'disp_x disp_y disp_z'
  multiply_by_density = false
  porepressure = porepressure
  biot_coefficient = 0.6
  gravity = '0 0 0'
  fp = the_simple_fluid
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '0.5 0.75'
    # bulk modulus is lambda + 2*mu/3 = 0.5 + 2*0.75/3 = 1
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./porosity]
    type = PorousFlowPorosityConst # only the initial value of this is ever used
    porosity = 0.1
  [../]
  [./biot_modulus]
    type = PorousFlowConstantBiotModulus
    biot_coefficient = 0.6
    solid_bulk_compliance = 1
    fluid_bulk_modulus = 8
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0.0 0 0'
    variable = porepressure
  [../]
  [./p1]
    type = PointValue
    outputs = csv
    point = '0.1 0 0'
    variable = porepressure
  [../]
  [./p2]
    type = PointValue
    outputs = csv
    point = '0.2 0 0'
    variable = porepressure
  [../]
  [./p3]
    type = PointValue
    outputs = csv
    point = '0.3 0 0'
    variable = porepressure
  [../]
  [./p4]
    type = PointValue
    outputs = csv
    point = '0.4 0 0'
    variable = porepressure
  [../]
  [./p5]
    type = PointValue
    outputs = csv
    point = '0.5 0 0'
    variable = porepressure
  [../]
  [./p6]
    type = PointValue
    outputs = csv
    point = '0.6 0 0'
    variable = porepressure
  [../]
  [./p7]
    type = PointValue
    outputs = csv
    point = '0.7 0 0'
    variable = porepressure
  [../]
  [./p8]
    type = PointValue
    outputs = csv
    point = '0.8 0 0'
    variable = porepressure
  [../]
  [./p9]
    type = PointValue
    outputs = csv
    point = '0.9 0 0'
    variable = porepressure
  [../]
  [./p99]
    type = PointValue
    outputs = csv
    point = '1 0 0'
    variable = porepressure
  [../]
  [./xdisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_x
  [../]
  [./ydisp]
    type = PointValue
    outputs = csv
    point = '1 0.1 0'
    variable = disp_y
  [../]
  [./total_downwards_force]
     type = ElementAverageValue
     outputs = csv
     variable = tot_force
  [../]
  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.15*t<0.01,0.15*t,0.01)
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres asm lu 1E-14 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 0.7
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.001
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = mandel_basicthm
  [./csv]
    interval = 3
    type = CSV
  [../]
[]

modules/tensor_mechanics/test/tests/beam/static/euler_small_strain_y_action.i

# Test for small strain Euler beam bending in y direction

# A unit load is applied at the end of a cantilever beam of length 4m.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 2.60072400269
# Shear modulus (G) = 1.0e4
# Poissons ratio (nu) = -0.9998699638
# Shear coefficient (k) = 0.85
# Cross-section area (A) = 0.554256
# Iy = 0.0141889 = Iz
# Length = 4 m

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 2.04e6

# The small deformation analytical deflection of the beam is given by
# delta = PL^3/3EI * (1 + 3.0 / alpha) = PL^3/3EI = 578 m

# Using 10 elements to discretize the beam element, the FEM solution is 576.866 m.
# The ratio beam FEM solution and analytical solution is 0.998.

# References:
# Prathap and Bashyam (1982), International journal for numerical methods in engineering, vol. 18, 195-210.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/LineElementMaster]
  [./all]
    add_variables = true
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'

    # Geometry parameters
    area = 0.554256
    Ay = 0.0
    Az = 0.0
    Iy = 0.0141889
    Iz = 0.0141889
    y_orientation = '0.0 1.0 0.0'
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 2.60072400269
    poissons_ratio = -0.9998699638
    shear_coefficient = 0.85
    block = 0
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = ConstantRate
    variable = disp_y
    boundary = right
    rate = 1.0e-4
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]
[Executioner]
  type = Transient
  solve_type = NEWTON
  line_search = 'none'
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 1
  dtmin = 1
  end_time = 2
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
[]

[Outputs]
  file_base = 'euler_small_strain_y_out'
  exodus = true
[]

modules/xfem/test/tests/single_var_constraint_2d/propagating_2field_2constraint.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.0'
    time_start_cut = 0.0
    time_end_cut = 2.0
  [../]
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[Constraints]
  [./xfem_constraint_u]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0
    jump_flux = 0
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
  [./xfem_constraint_v]
    type = XFEMSingleVariableConstraint
    variable = v
    jump = 0
    jump_flux = 0
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./left_v]
    type = DirichletBC
    variable = v
    boundary = 3
    value = 1
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/bcs/periodic/orthogonal_pbc_on_square.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  nz = 0
  xmax = 10
  ymax = 10
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Functions]
  [./tr_x]
    type = ParsedFunction
    value = 0
  [../]
  [./tr_y]
    type = ParsedFunction
    value = x
  [../]
  [./itr_x]
    type = ParsedFunction
    value = y
  [../]
  [./itr_y]
    type = ParsedFunction
    value = 0
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./forcing]
    type = GaussContForcing
    variable = u
    y_center = 1
    x_spread = 0.25
    y_spread = 0.5
  [../]
  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  # active = ' '
  [./Periodic]
    [./x]
      primary = bottom
      secondary = left
      transform_func = 'tr_x tr_y'
      inv_transform_func = 'itr_x itr_y'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  num_steps = 10
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/gravity/gravity_hex20.i

# Gravity Test
#
# This test is designed to exercise the gravity body force kernel.
#
# The mesh for this problem is a rectangular bar 10 units by 1 unit
#   by 1 unit.
#
# The boundary conditions for this problem are as follows.  The
#   displacement is zero on each of side that faces a negative
#   coordinate direction.  The acceleration of gravity is 20.
#
# The material has a Young's modulus of 1e6 and a density of 2.
#
# The analytic solution for the displacement along the bar is:
#
# u(x) = -b*x^2/(2*E)+b*L*x/E
#
# The displacement at x=L is b*L^2/(2*E) = 2*20*10*10/(2*1e6) = 0.002.
#
# The analytic solution for the stress along the bar assuming linear
#   elasticity is:
#
# S(x) = b*(L-x)
#
# The stress at x=0 is b*L = 2*20*10 = 400.
#
# Note:  The simulation does not measure stress at x=0.  The stress
#   is reported at element centers.  The element closest to x=0 sits
#   at x = 1/4 and has a stress of 390.  This matches the linear
#   stress distribution that is expected.  The same situation applies
#   at x = L where the stress is zero analytically.  The nearest
#   element is at x=9.75 where the stress is 10.
#
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = gravity_hex20_test.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  add_variables = true
  generate_output = 'stress_xx'
[]

[Kernels]
  [./gravity]
    type = Gravity
    variable = disp_x
    value = 20
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 5
    value = 0.0
  [../]
[]

[Materials]
  [./elasticty_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    bulk_modulus = 0.333333333333333e6
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./density]
    type = Density
    density = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = gravity_hex20_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/porous_flow/test/tests/infiltration_and_drainage/wli02.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 1
  xmin = -1000
  xmax = 0
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = pressure
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureBW
    Sn = 0.0
    Ss = 1.0
    C = 1.5
    las = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 4
      density0 = 10
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pressure
    capillary_pressure = pc
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityBW
    Sn = 0.0
    Ss = 1.0
    Kn = 0
    Ks = 1
    C = 1.5
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.25
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0  0 1 0  0 0 1'
  [../]
[]

[Variables]
  [./pressure]
    initial_condition = -1E-4
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pressure
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pressure
    gravity = '-0.1 0 0'
  [../]
[]

[AuxVariables]
  [./SWater]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./SWater]
    type = MaterialStdVectorAux
    property = PorousFlow_saturation_qp
    index = 0
    variable = SWater
  [../]
[]

[BCs]
  [./base]
    type = DirichletBC
    boundary = 'left'
    value = -1E-4
    variable = pressure
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10      1E-10      10000'
  [../]
[]

[VectorPostprocessors]
  [./swater]
    type = LineValueSampler
    variable = SWater
    start_point = '-1000 0 0'
    end_point = '0 0 0'
    sort_by = x
    num_points = 71
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 100
  dt = 5
[]

[Outputs]
  file_base = wli02
  sync_times = '100 500 1000'
  [./exodus]
    type = Exodus
    sync_only = true
  [../]
  [./along_line]
    type = CSV
    sync_only = true
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update21_cosserat.i

# Cosserat version of Capped Mohr Columb (using StressUpdate)
# Shear failure, starting from a symmetric stress state

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 60
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 2.0
    joint_shear_stiffness = 1.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '3 0 0  0 3 0  0 0 1.5'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombCosseratStressUpdate
    host_youngs_modulus = 1
    host_poissons_ratio = 0.25
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/porous_flow/test/tests/jacobian/diff03.i

# Test the Jacobian of the diffusive component of the PorousFlowDisperiveFlux kernel for two phases.
# By setting disp_long and disp_trans to zero, the purely diffusive component of the flux
# can be isolated. Uses saturation-dependent tortuosity and diffusion coefficients from the
# Millington-Quirk model

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./sgas]
  [../]
  [./massfrac0]
  [../]
[]

[AuxVariables]
  [./massfrac1]
  [../]
[]

[ICs]
  [./sgas]
    type = RandomIC
    variable = sgas
    max = 1
    min = 0
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 1
  [../]
  [./massfrac1]
    type = RandomIC
    variable = massfrac1
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = sgas
    gravity = '1 0 0'
    disp_long = '0 0'
    disp_trans = '0 0'
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    gravity = '1 0 0'
    disp_long = '0 0'
    disp_trans = '0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'sgas massfrac0'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1e7
      density0 = 10
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1e7
      density0 = 1
      thermal_expansion = 0
      viscosity = 0.1
    [../]
  [../]
[]

[Materials]
  [./temp]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = 1
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0 massfrac1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./poro]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./diff]
    type = PorousFlowDiffusivityMillingtonQuirk
    diffusion_coeff = '1e-2 1e-1 1e-2 1e-1'
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityConst
    phase = 1
  [../]
[]

[Preconditioning]
  active = smp
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_1/plane1_template2.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = plane1_mesh.e
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 200
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 4
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 4
    paired_boundary = 3
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_x
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_y2]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeIncrementalSmallStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeIncrementalSmallStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x2 disp_y2 disp_x7 disp_y7 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
    al_penetration_tolerance = 1e-8
  [../]
[]

modules/tensor_mechanics/test/tests/cp_slip_rate_integ/crysp.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./gss1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss1
    property = gss
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCPSlipRateRes
    gtol = 1e-2
    rtol = 1e-8
    abs_tol = 1e-15
    slip_sys_file_name = input_slip_sys.txt
    nss = 12
    num_slip_sys_flowrate_props = 2 #Number of properties in a slip system
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    hprops = '1.0 541.5 60.8 109.8 2.5'
    gprops = '1 4 60.8 5 8 60.8 9 12 60.8'
    tan_mod_type = exact
    slip_incr_tol = 1
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
  [../]
  [./gss1]
    type = ElementAverageValue
    variable = gss1
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  dt = 0.2
  dtmin = 0.05
  dtmax = 10.0

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  end_time = 1
[]

[Outputs]
  file_base = out
  exodus = true
  print_linear_residuals = true
  perf_graph = true
[]

modules/porous_flow/test/tests/infiltration_and_drainage/rd03.i

[Mesh]
  file = gold/rd02.e
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '2E4 1E6'
    x = '0 1E6'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = pressure
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.336
    alpha = 1.43e-4
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e7
      viscosity = 1.01e-3
      density0 = 1000
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pressure
    capillary_pressure = pc
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityVG
    m = 0.336
    seff_turnover = 0.99
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.33
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0.295E-12 0 0  0 0.295E-12 0  0 0 0.295E-12'
  [../]
[]

[Variables]
  [./pressure]
    initial_from_file_timestep = LATEST
    initial_from_file_var = pressure
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pressure
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pressure
    gravity = '-10 0 0'
  [../]
[]

[AuxVariables]
  [./SWater]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./SWater]
    type = MaterialStdVectorAux
    property = PorousFlow_saturation_qp
    index = 0
    variable = SWater
  [../]
[]

[BCs]
  [./base]
    type = DirichletBC
    boundary = left
    value = 0.0
    variable = pressure
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10      1E-10      10'
  [../]
[]

[VectorPostprocessors]
  [./swater]
    type = LineValueSampler
    variable = SWater
    start_point = '0 0 0'
    end_point = '6 0 0'
    sort_by = x
    num_points = 121
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 8.2944E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = rd03
  [./exodus]
    type = Exodus
    execute_on = 'initial final'
  [../]
  [./along_line]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/multiapps/picard_multilevel/picard_sub2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./v]
  [../]
[]

[Kernels]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./td_v]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/reset/multilevel_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '1 1 0'
    input_files = multilevel_sub.i
    output_in_position = true
    reset_apps = 0
    reset_time = 0.05
  [../]
[]

modules/porous_flow/test/tests/energy_conservation/except02.i

# checking that the heat-energy postprocessor throws the correct error if the kernel_variable_number is illegal
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 3
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./pp]
  [../]
  [./temp]
  [../]
[]

[ICs]
  [./tinit]
    type = FunctionIC
    function = '100*x'
    variable = temp
  [../]
  [./pinit]
    type = FunctionIC
    function = x
    variable = pp
  [../]
[]

[Kernels]
  [./dummyt]
    type = TimeDerivative
    variable = temp
  [../]
  [./dummyp]
    type = TimeDerivative
    variable = pp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1
      density0 = 1
      viscosity = 0.001
      thermal_expansion = 0
      cv = 1.3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 2.2
    density = 0.5
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Postprocessors]
  [./total_heat]
    type = PorousFlowHeatEnergy
    kernel_variable_number = 2
  [../]
  [./rock_heat]
    type = PorousFlowHeatEnergy
  [../]
  [./fluid_heat]
    type = PorousFlowHeatEnergy
    include_porous_skeleton = false
    phase = 0
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1 1 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = except01
  csv = true
[]

modules/tensor_mechanics/test/tests/multi/three_surface14.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 3
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 2.1E-6m in y direction and 3E-6 in z direction.
# trial stress_yy = 2.1 and stress_zz = 3.0
#
# Then all three will be active, but there is linear-dependence.
# SimpleTester1 will turn off, since it is closest,
# and the algorithm will return to stress_zz=1, stress_yy=2, but
# then SimpleTester1 will be positive, so it will be turned back
# on, and then SimpleTester0 or SimpleTester2 will be turned off
# (a random choice will be made).
# If SimpleTester2 is turned
# off then algorithm returns to stress_zz=1=stress_yy, but then
# SimpleTester2 violates Kuhn-Tucker (f<0 and pm>0), so the algorithm
# will restart, and return to stress_zz=1=stress_yy, with internal0=2
# and internal1=1.1
# If SimpleTester0 is turned off then the algorithm will return to
# stress_zz=2, stress_yy=1, where f0>0.  Once again, a random choice
# of turning off SimpleTester1 or SimpleTester2 can be made.  Hence,
# oscillations can occur.  If too many oscillations occur then the algorithm
# will fail

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2.1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '3.0E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 3
    yield_function_tolerance = 1.0E-6
    internal_constraint_tolerance = 1.0E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 4
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1 1'
    debug_jac_at_intnl = '1 1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface14
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

test/tests/geomsearch/2d_moving_penetration/pl_test4ns.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-10
  l_max_its = 10

  start_time = 0.0
  dt = 0.0125
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test4ns_out
  exodus = true
[]

modules/stochastic_tools/test/tests/samplers/execute_on/initial.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform]
    type = UniformDistribution
    lower_bound = -42
    upper_bound = 42
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 10
    distributions = 'uniform'
    execute_on = 'initial' # Create random numbers on initial only, they remain the same with time.
  []
[]

[VectorPostprocessors]
  [data]
    type = SamplerData
    sampler = sample
    execute_on = 'INITIAL TIMESTEP_END'
  []
[]

[Executioner]
  type = Transient
  num_steps = 3
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'INITIAL TIMESTEP_END'
  csv = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform9.i

# apply a shear deformation to observe shear hardening.
# Shear gives q_trial = 2*Sqrt(20), p_trial=0
# The solution given by MOOSE correctly satisfies the equations
# 0 = f = q + p*tan(phi) - coh
# 0 = p - p_trial + ga * Ezzzz * dg/dp
# 0 = q - q_trial + ga * Ezxzx * dg/dq
# Here dg/dp = tan(psi), and dg/dq = 1
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 't'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = '2*t'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '0'
  [../]
[]


[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 2
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1E8
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 1E8
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '4 4'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-3
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform9
  [./csv]
    type = CSV
  [../]
[]

modules/combined/examples/periodic_strain/global_strain_pfm.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 50
    ny = 50
    xmin = -0.5
    xmax = 0.5
    ymin = -0.5
    ymax = 0.5
  []
  [./cnode]
    input = gen
    type = ExtraNodesetGenerator
    coord = '0.0 0.0'
    new_boundary = 100
  [../]
[]

[Variables]
  [./u_x]
  [../]
  [./u_y]
  [../]
  [./global_strain]
    order = THIRD
    family = SCALAR
  [../]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = 'sin(2*x*pi)*sin(2*y*pi)*0.05+0.6'
    [../]
  [../]
  [./w]
  [../]
[]

[AuxVariables]
  [./local_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./s00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./s01]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./s10]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./s11]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e00]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e01]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e10]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e11]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./disp_x]
    type = GlobalDisplacementAux
    variable = disp_x
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 0
  [../]
  [./disp_y]
    type = GlobalDisplacementAux
    variable = disp_y
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
    component = 1
  [../]
  [./local_free_energy]
    type = TotalFreeEnergy
    execute_on = 'initial LINEAR'
    variable = local_energy
    interfacial_vars = 'c'
    kappa_names = 'kappa_c'
  [../]
  [./s00]
    type = RankTwoAux
    variable = s00
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./s01]
    type = RankTwoAux
    variable = s01
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
  [../]
  [./s10]
    type = RankTwoAux
    variable = s10
    rank_two_tensor = stress
    index_i = 1
    index_j = 0
  [../]
  [./s11]
    type = RankTwoAux
    variable = s11
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
  [../]
  [./e00]
    type = RankTwoAux
    variable = e00
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 0
  [../]
  [./e01]
    type = RankTwoAux
    variable = e01
    rank_two_tensor = total_strain
    index_i = 0
    index_j = 1
  [../]
  [./e10]
    type = RankTwoAux
    variable = e10
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 0
  [../]
  [./e11]
    type = RankTwoAux
    variable = e11
    rank_two_tensor = total_strain
    index_i = 1
    index_j = 1
  [../]
[]

[GlobalParams]
  derivative_order = 2
  enable_jit = true
  displacements = 'u_x u_y'
  block = 0
[]

[Kernels]
  [./TensorMechanics]
  [../]

  # Cahn-Hilliard kernels
  [./c_dot]
    type = CoupledTimeDerivative
    variable = w
    v = c
    block = 0
  [../]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    block = 0
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
    block = 0
  [../]
[]

[ScalarKernels]
  [./global_strain]
    type = GlobalStrain
    variable = global_strain
    global_strain_uo = global_strain_uo
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
      variable = 'c w u_x u_y'
    [../]
  [../]

  # fix center point location
  [./centerfix_x]
    type = DirichletBC
    boundary = 100
    variable = u_x
    value = 0
  [../]
  [./centerfix_y]
    type = DirichletBC
    boundary = 100
    variable = u_y
    value = 0
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'M   kappa_c'
    prop_values = '0.2 0.01   '
  [../]

  [./shear1]
    type = GenericConstantRankTwoTensor
    tensor_values = '0 0 0 0 0 0.5'
    tensor_name = shear1
  [../]
  [./shear2]
    type = GenericConstantRankTwoTensor
    tensor_values = '0 0 0 0 0 -0.5'
    tensor_name = shear2
  [../]
  [./expand3]
    type = GenericConstantRankTwoTensor
    tensor_values = '1 1 0 0 0 0'
    tensor_name = expand3
  [../]

  [./weight1]
    type = DerivativeParsedMaterial
    function = '0.3*c^2'
    f_name = weight1
    args = c
  [../]
  [./weight2]
    type = DerivativeParsedMaterial
    function = '0.3*(1-c)^2'
    f_name = weight2
    args = c
  [../]
  [./weight3]
    type = DerivativeParsedMaterial
    function = '4*(0.5-c)^2'
    f_name = weight3
    args = c
  [../]

  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1'
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
    global_strain = global_strain
    eigenstrain_names = eigenstrain
  [../]

  [./eigenstrain]
    type = CompositeEigenstrain
    tensors = 'shear1  shear2  expand3'
    weights = 'weight1 weight2 weight3'
    args = c
    eigenstrain_name = eigenstrain
  [../]

  [./global_strain]
    type = ComputeGlobalStrain
    scalar_global_strain = global_strain
    global_strain_uo = global_strain_uo
  [../]

  [./stress]
    type = ComputeLinearElasticStress
  [../]

  # chemical free energies
  [./chemical_free_energy]
    type = DerivativeParsedMaterial
    f_name = Fc
    function = '4*c^2*(1-c)^2'
    args = 'c'
    outputs = exodus
    output_properties = Fc
  [../]

  # elastic free energies
  [./elastic_free_energy]
    type = ElasticEnergyMaterial
    f_name = Fe
    args = 'c'
    outputs = exodus
    output_properties = Fe
  [../]

  # free energy (chemical + elastic)
  [./free_energy]
    type = DerivativeSumMaterial
    block = 0
    f_name = F
    sum_materials = 'Fc Fe'
    args = 'c'
  [../]
[]

[UserObjects]
  [./global_strain_uo]
    type = GlobalStrainUserObject
    execute_on = 'Initial Linear Nonlinear'
  [../]
[]

[Postprocessors]
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    execute_on = 'initial TIMESTEP_END'
    variable = local_energy
  [../]
  [./total_solute]
    type = ElementIntegralVariablePostprocessor
    execute_on = 'initial TIMESTEP_END'
    variable = c
  [../]
  [./min]
    type = ElementExtremeValue
    execute_on = 'initial TIMESTEP_END'
    value_type = min
    variable = c
  [../]
  [./max]
    type = ElementExtremeValue
    execute_on = 'initial TIMESTEP_END'
    value_type = max
    variable = c
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'PJFNK'

  line_search = basic

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  l_max_its = 30
  nl_max_its = 12

  l_tol = 1.0e-4

  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10

  start_time = 0.0
  end_time = 2.0

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.01
    growth_factor = 1.5
    cutback_factor = 0.8
    optimal_iterations = 9
    iteration_window = 2
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  print_linear_residuals = false
  exodus = true
  [./table]
    type = CSV
    delimiter = ' '
  [../]
[]

modules/tensor_mechanics/test/tests/multi/two_surface05.i

# Plasticit models:
# SimpleTester with a = 0 and b = 1 and strength = 1
# SimpleTester with a = 1 and b = 1 and strength = 2
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 3E-6m in y directions and 1.0E-6 in z direction.
# trial stress_zz = 1 and stress_yy = 3
#
# Then SimpleTester2 should activate and the algorithm will return to
# stress_zz = 0, stress_yy = 2
# internal0 should be zero, and internal1 should be 1

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '3E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
[]

[UserObjects]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 2
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = two_surface05
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/richards/test/tests/uo_egs/seff1.i

# Outputs a effective saturation relationship into an exodus file
# and into a CSV file.
# In the exodus file, the Seff will be a function of "x", and
# this "x" is actually porepressure
# In the CSV file you will find the Seff at the "x" point
# specified by you below.
#
# You may specify:
#  - the "type" of Seff in the UserObjects block
#  - the parameters of this Seff function in the UserObjects block
#  - the "x" point (which is porepressure) that you want to extract
#       the Seff at, if you want a value at a particular point
#  - the range of "x" values (which is porepressure values) may be
#       changed in the Mesh block, below


[UserObjects]
  [./seff]
    type = RichardsSeff1VG
    al = 1E-6
    m = 0.8
  [../]
[]

[Postprocessors]
  [./point_val]
    type = PointValue
    execute_on = timestep_begin
    # note this point must lie inside the mesh below
    point = '-1 0 0'
    variable = seff
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  # the following specify the range of porepressure
  xmin = -3E6
  xmax = 1E5
[]

############################
# You should not need to change any of the stuff below
############################


[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = x
  [../]
[]

[AuxVariables]
  [./seff]
  [../]
[]

[AuxKernels]
  [./seff_AuxK]
    type = RichardsSeffAux
    variable = seff
    seff_UO = seff
    execute_on = timestep_begin
    pressure_vars = u
  [../]
[]

[Kernels]
  [./dummy]
    type = Diffusion
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 0
[]

[Outputs]
  file_base = seff1
  [./csv]
    type = CSV
  [../]
  [./exodus]
    type = Exodus
    hide = u
  [../]
[]

test/tests/vectorpostprocessors/volume_histogram/volume_histogram.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 200
  xmin = -5
  xmax = 5
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = 'x<2&x>-2'
    [../]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[BCs]
  [./all]
    type = DirichletBC
    variable = c
    boundary = 'left right'
    value = 0
  [../]
[]

[VectorPostprocessors]
  [./histo]
    type = VolumeHistogram
    variable = c
    min_value = 0
    max_value = 1.1
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 1
  solve_type = PJFNK
[]

[Outputs]
  execute_on = 'initial timestep_end'
  csv = true
[]

modules/tensor_mechanics/test/tests/check_error/pressure_component.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = cube.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

  [./fred]
    type = Pressure
    boundary = 4
    component = 123456789
    variable = disp_x
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    bulk_modulus = 1e6
    poissons_ratio = 0.0
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/combined/test/tests/mortar_tm/2drz/frictionless_first/small.i

E_block = 1e7
E_plank = 1e7
elem = QUAD4
order = FIRST
name = 'small'

[Problem]
  coord_type = RZ
[]

[Mesh]
  patch_size = 80
  patch_update_strategy = auto
  [./plank]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0
    xmax = 0.6
    ymin = -10
    ymax = 10
    nx = 2
    ny = 67
    elem_type = ${elem}
  [../]
  [./plank_sidesets]
    type = RenameBoundaryGenerator
    input = plank
    old_boundary_id = '0 1 2 3'
    new_boundary_name = 'plank_bottom plank_right plank_top plank_left'
  [../]
  [./plank_id]
    type = SubdomainIDGenerator
    input = plank_sidesets
    subdomain_id = 1
  [../]

  [./block]
    type = GeneratedMeshGenerator
    dim = 2
    xmin = 0.61
    xmax = 1.21
    ymin = 9.2
    ymax = 10.0
    nx = 3
    ny = 4
    elem_type = ${elem}
  [../]
  [./block_id]
    type = SubdomainIDGenerator
    input = block
    subdomain_id = 2
  [../]

  [./combined]
    type = MeshCollectionGenerator
    inputs = 'plank_id block_id'
  [../]
  [./block_rename]
    type = RenameBlockGenerator
    input = combined
    old_block_id = '1 2'
    new_block_name = 'plank block'
  [../]
  [./corner]
    type = ExtraNodesetGenerator
    input = block_rename
    coord = '0 -10.0'
    new_boundary = point
  [../]
  [./block_sidesets]
    type = SideSetsFromPointsGenerator
    input = corner
    points = '0.9  9.2  0
              1.21 9.5  0
              0.9  10.0 0
              0.61 9.5  0'
    new_boundary = 'block_bottom block_right block_top block_left'
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
  [./disp_y]
    order = ${order}
    block = 'plank block'
    scaling = ${fparse 2.0 / (E_plank + E_block)}
  [../]
[]

[Modules/TensorMechanics/Master]
  [./block]
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'block'
  [../]
  [./plank]
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress strain_xx strain_yy strain_zz'
    block = 'plank'
    eigenstrain_names = 'swell'
  [../]
[]

[Contact]
  [./frictionless]
    mesh = block_sidesets
    master = plank_right
    slave = block_left
    formulation = mortar
    system = constraint
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = plank_left
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = plank_bottom
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = block_right
    value = 0
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = block_right
    function = '-t'
  [../]
[]

[Materials]
  [./plank]
    type = ComputeIsotropicElasticityTensor
    block = 'plank'
    poissons_ratio = 0.3
    youngs_modulus = ${E_plank}
  [../]
  [./block]
    type = ComputeIsotropicElasticityTensor
    block = 'block'
    poissons_ratio = 0.3
    youngs_modulus = ${E_block}
  [../]
  [./stress]
    type = ComputeLinearElasticStress
    block = 'plank block'
  [../]
  [./swell]
    type = ComputeEigenstrain
    block = 'plank'
    eigenstrain_name = swell
    eigen_base = '1 0 0 0 0 0 0 0 0'
    prefactor = swell_mat
  [../]
  [./swell_mat]
    type = GenericFunctionMaterial
    prop_names = 'swell_mat'
    prop_values = '7e-2*(1-cos(4*t))'
    block = 'plank'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 10
  dt = 0.1
  dtmin = 0.1
  timestep_tolerance = 1e-6
  line_search = 'contact'
[]

[Postprocessors]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./total_nl_its]
    type = CumulativeValuePostprocessor
    postprocessor = nl_its
  [../]
  [./l_its]
    type = NumLinearIterations
  [../]
  [./total_l_its]
    type = CumulativeValuePostprocessor
    postprocessor = l_its
  [../]
  [./contact]
    type = ContactDOFSetSize
    variable = frictionless_normal_lm
    subdomain = frictionless_slave_subdomain
  [../]
  [./avg_hydro]
    type = ElementAverageValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./max_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
  [../]
  [./min_hydro]
    type = ElementExtremeValue
    variable = hydrostatic_stress
    block = 'block'
    value_type = min
  [../]
  [./avg_vonmises]
    type = ElementAverageValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./max_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
  [../]
  [./min_vonmises]
    type = ElementExtremeValue
    variable = vonmises_stress
    block = 'block'
    value_type = min
  [../]
[]

[Outputs]
  exodus = true
  file_base = ${name}
  [./comp]
    type = CSV
    show = 'contact'
  [../]
  [./out]
    type = CSV
    file_base = '${name}_out'
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/random.i

# apply many random large deformations, checking that the algorithm returns correctly to
# the yield surface each time.


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./yield_fcn_at_zero]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console'
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'yield_fcn_at_zero'
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 1E3
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 0.1E3
    mc_edge_smoother = 25
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    max_NR_iterations = 1000
    ep_plastic_tolerance = 1E-6
    min_stepsize = 1E-3
    plastic_models = mc
    debug_fspb = crash
    deactivation_scheme = safe
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/tensor_mechanics/test/tests/dynamics/rayleigh_damping/rayleigh_hht.i

# Test for rayleigh damping implemented using HHT time integration
#
# The test is for an 1D bar element of  unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# zeta and eta correspond to the stiffness and mass proportional rayleigh damping
# alpha, beta and gamma are HHT time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel + (eta*M+zeta*K)*[(1+alpha)vel-alpha vel_old]
# + alpha*(K*disp - K*disp_old) + K*disp = P(t+alpha dt)*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + eta*density*[(1+alpha)vel-alpha vel_old]
# + zeta*[(1+alpha)*d/dt(Div stress)- alpha*d/dt(Div stress_old)]
# + alpha *(Div stress - Div stress_old) +Div Stress= P(t+alpha dt)
#
# The first two terms on the left are evaluated using the Inertial force kernel
# The next three terms on the left involving zeta and alpha are evaluated using
# the DynamicStressDivergenceTensors Kernel
# The residual due to Pressure is evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure becomes constant.
# Alpha equal to zero will result in Newmark integration.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./DynamicTensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    zeta = 0.1
    alpha = 0.11
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
    eta=0.1
    alpha = 0.11
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
    eta=0.1
    alpha = 0.11
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
    eta = 0.1
    alpha = 0.11
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 0
    index_j = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = bottom
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
      factor = 1
      alpha  = 0.11
    [../]
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '210e9 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]

[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 2
  dt = 0.1
[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp]
    type = NodalMaxValue
    variable = disp_y
    boundary = bottom
  [../]
  [./vel]
    type = NodalMaxValue
    variable = vel_y
    boundary = bottom
  [../]
  [./accel]
    type = NodalMaxValue
    variable = accel_y
    boundary = bottom
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

test/tests/transfers/multiapp_userobject_transfer/tosub_displaced_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 8
  xmax = 0.1
  ymax = 0.5
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./u]
    initial_condition = 1
  [../]
[]

[AuxVariables]
  [./multi_layered_average]
  [../]
  [./element_multi_layered_average]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./disp_x]
    initial_condition = 0.0
  [../]
  [./disp_y]
    initial_condition = 0.5
  [../]
[]

[Functions]
  [./axial_force]
    type = ParsedFunction
    value = 1000*y
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = axial_force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.001

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Problem]
  coord_type = rz
  type = FEProblem
[]

modules/phase_field/test/tests/reconstruction/2phase_reconstruction2.i

#
# In this test we set the initial condition of a set of order parameters
# by pulling out the only grains from given EBSD data file that belong to a specified phase
#

[Problem]
  type = FEProblem
  solve = false
  kernel_coverage_check = false
[]

# The following sections are extracted in the documentation in
# moose/docs/content/modules/phase_field/ICs/EBSD.md

[Mesh]
  type = EBSDMesh
  filename = Ti_2Phase_28x28_ebsd.txt
[]

[GlobalParams]
  op_num = 2
  var_name_base = gr
[]

[UserObjects]
  [./ebsd_reader]
    type = EBSDReader
  [../]
  [./ebsd]
    type = PolycrystalEBSD
    coloring_algorithm = bt
    ebsd_reader = ebsd_reader
    phase = 1
    output_adjacency_matrix = true
  [../]
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      # select only data for phase 1 from the EBSD file
      polycrystal_ic_uo = ebsd
    [../]
  [../]
[]
#ENDDOC - End of the file section that is included in the documentation. Do not change this line!

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_nearest_node_transfer/boundary_tomaster_master.i

# Master mesh and sub mesh are same with 4x4 quad8 elements.
# master mesh has top boundary fixed at u=2 and bottom fixed at u=0
# sub mesh has top boundary fixed at u = 0 and bottom fixed at u=1
# The u variable at right boundary of sub mesh is transferred to
# from_sub variable of master mesh at left boundary

# Result is from_sub at left boundary has linearly increasing value starting
# with 0 at top and ending with 1 at bottom. from_sub is zero everywhere else
# in the master mesh.

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  elem_type = QUAD8
[]

[Variables]
  [./u]
    family = LAGRANGE
    order = FIRST
  [../]
[]

[AuxVariables]
  [./from_sub]
    family = LAGRANGE
    order = SECOND
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = top
    value = 2.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 0.0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = boundary_tomaster_sub.i
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    source_boundary = right
    target_boundary = left
    variable = from_sub
  [../]
[]

test/tests/controls/time_periods/transfers/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.01
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./pp_sub]
    app_type = MooseTestApp
    positions = '0.5 0.5 0 0.7 0.7 0'
    execute_on = timestep_end
    type = TransientMultiApp
    input_files = sub.i
  [../]
[]

[Transfers]
  [./pp_transfer]
    type = MultiAppPostprocessorToAuxScalarTransfer
    direction = to_multiapp
    multi_app = pp_sub
    from_postprocessor = average
    to_aux_scalar = from_master_app
  [../]
[]

[Controls]
  [./transfers]
    type = TimePeriod
    enable_objects = Transfer::pp_transfer
    start_time = 2
    execute_on = 'initial timestep_begin'
  [../]
[]

test/tests/multiapps/sub_cycling/sub_iteration_adaptive.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.01
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/transfer_on_final/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
    initial_condition = 10
  []
[]

[AuxVariables]
  [v]
    initial_condition = 20
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = Diffusion
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 10
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 20
  []
[]

[Executioner]
  type = Transient
  num_steps = 4
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [final]
    type = Exodus
    execute_on = 'FINAL'
    execute_input_on = 'NONE' # This is needed to avoid problems with creating a file w/o data during --recover testing
  []
[]

test/tests/multiapps/picard_sub_cycling/picard_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 2
  dt = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = picard_sub.i
    sub_cycling = true
    interpolate_transfers = true
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

modules/phase_field/test/tests/actions/conserved_split_1var_variable_mob.i

#
# Test the conserved action with split solve and 1 variable
#
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  xmax = 50
  ymax = 50
  elem_type = QUAD
[]

[Modules]
  [./PhaseField]
    [./Conserved]
      [./cv]
        solve_type = REVERSE_SPLIT
        free_energy = F
        kappa = 2.0
        mobility = M
        args = 'cv'
      [../]
    [../]
  [../]
[]

[ICs]
  [./InitialCondition]
    type = CrossIC
    x1 = 5.0
    y1 = 5.0
    x2 = 45.0
    y2 = 45.0
    variable = cv
  [../]
[]

[Materials]
  [./variable_mob]
    type = DerivativeParsedMaterial
    f_name = M
    args = 'cv'
    function = '0.1 + (1 + cv)/2'
    outputs = exodus
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'cv'
    function = '(1-cv)^2 * (1+cv)^2'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'

  l_max_its = 30
  l_tol = 1.0e-4
  nl_max_its = 10
  nl_rel_tol = 1.0e-10

  start_time = 0.0
  num_steps = 5
  dt = 0.7
[]

[Outputs]
  exodus = true
[]

test/tests/bcs/misc_bcs/convective_flux_bc.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff'

  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  active = 'left right'

  [./left]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 0.0
  [../]

  [./right]
    type = ConvectiveFluxBC
    variable = u
    boundary = 1
    rate = 100
    initial = 10
    final = 20
    duration = 10
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 10
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/chemistry/except9.i

# Exception test.
# Incorrect number of kinetic rate constants

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    reactions = '1 1'
    specific_reactive_surface_area = 1.0
    kinetic_rate_constant = '1.0e-8 1'
    activation_energy = '1.5e4'
    molar_volume = 1
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/except3.i

# Exception: incorrect userobject types
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.05
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]

modules/combined/test/tests/contact/pressurePenalty_mechanical_constraint.i

# This is a mechanical constraint (contact formulation) version of pressurePenalty.i
[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = pressure.e
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = SMALL
    generate_output = 'stress_yy'
  []
[]

[Contact]
  [./m20_s10]
    master = 20
    slave = 10
    penalty = 1e8
    formulation = penalty
    tangential_tolerance = 1e-3
    system = constraint
    tension_release = -1
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 3
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 5
    value = 0.0
  [../]

  [./Pressure]
    [./press]
      boundary = 7
      factor = 1e3
    [../]
  [../]

  [./down]
    type = DirichletBC
    variable = disp_y
    boundary = 8
    value = -2e-3
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.0
  [../]
  [./stiffStuff1_stress]
    type = ComputeLinearElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'

  line_search = 'none'

  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-9

  l_max_its = 100
  nl_max_its = 10
  dt = 1.0
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/chemistry/precipitation_2phase.i

# Using a two-phase system (see precipitation.i for the single-phase)
# The saturation and porosity are chosen so that the results are identical to precipitation.i
#
# The precipitation reaction
#
# a <==> mineral
#
# produces "mineral".  Using mineral_density = fluid_density, theta = 1 = eta, the DE is
#
# a' = -(mineral / (porosity * saturation))' = rate * surf_area * molar_vol (1 - (1 / eqm_const) * (act_coeff * a)^stoi)
#
# The following parameters are used
#
# T_ref = 0.5 K
# T = 1 K
# activation_energy = 3 J/mol
# gas_constant = 6 J/(mol K)
# kinetic_rate_at_ref_T = 0.60653 mol/(m^2 s)
# These give rate = 0.60653 * exp(1/2) = 1 mol/(m^2 s)
#
# surf_area = 0.5 m^2/L
# molar_volume = 2 L/mol
# These give rate * surf_area * molar_vol = 1 s^-1
#
# equilibrium_constant = 0.5 (dimensionless)
# primary_activity_coefficient = 2 (dimensionless)
# stoichiometry = 1 (dimensionless)
# This means that 1 - (1 / eqm_const) * (act_coeff * a)^stoi = 1 - 4 a, which is negative for a > 0.25, ie precipitation for a(t=0) > 0.25
#
# The solution of the DE is
# a = eqm_const / act_coeff + (a(t=0) - eqm_const / act_coeff) exp(-rate * surf_area * molar_vol * act_coeff * t / eqm_const)
#   = 0.25 + (a(t=0) - 0.25) exp(-4 * t)
# c = c(t=0) - (a - a(t=0)) * (porosity * saturation)
#
# This test checks that (a + c / (porosity * saturation)) is time-independent, and that a follows the above solution
#
# Aside:
#    The exponential curve is not followed exactly because moose actually solves
#    (a - a_old)/dt = rate * surf_area * molar_vol (1 - (1 / eqm_const) * (act_coeff * a)^stoi)
#    which does not give an exponential exactly, except in the limit dt->0
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.9
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 0.5
  [../]
  [./pressure0]
  [../]
  [./saturation1]
    initial_condition = 0.25
  [../]
  [./b]
    initial_condition = 0.123
  [../]
  [./ini_mineral_conc]
    initial_condition = 0.2
  [../]
  [./mineral]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./should_be_static]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./mineral]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = mineral
  [../]
  [./should_be_static]
    type = ParsedAux
    args = 'mineral a'
    function = 'a + mineral / 0.1'
    variable = should_be_static
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./mass_a]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = a
  [../]
  [./pre_dis]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1000
    stoichiometry = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = a
    number_fluid_phases = 2
    number_fluid_components = 2
    number_aqueous_kinetic = 1
    aqueous_phase_number = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9 # huge, so mimic chemical_reactions
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 1
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    capillary_pressure = pc
    phase0_porepressure = pressure0
    phase1_saturation = saturation1
  [../]
  [./mass_frac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'b a'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = a
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = 2
    reactions = 1
    specific_reactive_surface_area = 0.5
    kinetic_rate_constant = 0.6065306597126334
    activation_energy = 3
    molar_volume = 2
    gas_constant = 6
    reference_temperature = 0.5
  [../]
  [./mineral_conc]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_mineral_conc
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.4
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1E-10
  dt = 0.01
  end_time = 1
[]

[Postprocessors]
  [./a]
    type = PointValue
    point = '0 0 0'
    variable = a
  [../]
  [./should_be_static]
    type = PointValue
    point = '0 0 0'
    variable = should_be_static
  [../]
[]
[Outputs]
  interval = 10
  csv = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_2d_mouth_dir.i

#This tests the J-Integral evaluation capability.
#This is a 2d plane strain model
#Crack direction is defined using the crack mouth coordinates.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack2d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackMouth
  crack_mouth_boundary = 900
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = j_integral_2d_mouth_dir_out
  exodus = true
  csv = true
[]

test/tests/multiapps/max_procs_per_app/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub.i
    max_procs_per_app = 1
  [../]
[]

modules/tensor_mechanics/test/tests/mean_cap_TC/random02.i

# apply many random large deformations, checking that the algorithm returns correctly to
# the yield surface each time.
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1000
  ny = 125
  nz = 1
  xmin = 0
  xmax = 1000
  ymin = 0
  ymax = 125
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./max_yield_fcn]
    type = ElementExtremeValue
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console'
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'max_yield_fcn'
  [../]
[]

[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningConstant
    value = -1.5
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
    use_custom_returnMap = true
    use_custom_cto = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    max_NR_iterations = 2
    ep_plastic_tolerance = 1E-6
    plastic_models = cap
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random02
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/richards/test/tests/jacobian_2/jn02.i

# two phase
# unsaturated = true

# gravity = true
# supg = false
# transient = false

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardsfgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn02
  exodus = false
[]

modules/porous_flow/test/tests/infiltration_and_drainage/rsc01.i

# RSC test with high-res time and spatial resolution
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 600
  ny = 1
  xmin = 0
  xmax = 10 # x is the depth variable, called zeta in RSC
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '3E-3 3E-2 0.05'
    x = '0 1 5'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pwater poil'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureRSC
    oil_viscosity = 2E-3
    scale_ratio = 2E3
    shift = 10
  [../]
[]

[Modules]
  [./FluidProperties]
    [./water]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 10
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
    [./oil]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 20
      thermal_expansion = 0
      viscosity = 2e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = pwater
    phase1_porepressure = poil
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./water]
    type = PorousFlowSingleComponentFluid
    fp = water
    phase = 0
    compute_enthalpy = false
    compute_internal_energy = false
  [../]
  [./oil]
    type = PorousFlowSingleComponentFluid
    fp = oil
    phase = 1
    compute_enthalpy = false
    compute_internal_energy = false
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm_oil]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.25
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
  [../]
[]

[Variables]
  [./pwater]
  [../]
  [./poil]
  [../]
[]

[ICs]
  [./water_init]
    type = ConstantIC
    variable = pwater
    value = 0
  [../]
  [./oil_init]
    type = ConstantIC
    variable = poil
    value = 15
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pwater
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = poil
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = poil
  [../]
[]

[AuxVariables]
  [./SWater]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./SOil]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
[]

[AuxKernels]
  [./SWater]
    type = MaterialStdVectorAux
    property = PorousFlow_saturation_qp
    index = 0
    variable = SWater
  [../]
  [./SOil]
    type = MaterialStdVectorAux
    property = PorousFlow_saturation_qp
    index = 1
    variable = SOil
  [../]
[]

[BCs]
# we are pumping water into a system that has virtually incompressible fluids, hence the pressures rise enormously.  this adversely affects convergence because of almost-overflows and precision-loss problems.  The fixed things help keep pressures low and so prevent these awful behaviours.   the movement of the saturation front is the same regardless of the fixed things.
  active = 'recharge fixedoil fixedwater'
  [./recharge]
    type = PorousFlowSink
    variable = pwater
    boundary = 'left'
    flux_function = -1.0
  [../]
  [./fixedwater]
    type = DirichletBC
    variable = pwater
    boundary = 'right'
    value = 0
  [../]
  [./fixedoil]
    type = DirichletBC
    variable = poil
    boundary = 'right'
    value = 15
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10      1E-10      10000'
  [../]
[]

[VectorPostprocessors]
  [./swater]
    type = LineValueSampler
    variable = SWater
    start_point = '0 0 0'
    end_point = '7 0 0'
    sort_by = x
    num_points = 21
    execute_on = timestep_end
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 5
  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  file_base = rsc01
  [./along_line]
    type = CSV
    execute_vector_postprocessors_on = final
  [../]
  [./exodus]
    type = Exodus
    execute_on = 'initial final'
  [../]
[]

modules/phase_field/test/tests/grain_growth/evolution.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmax = 1000
  ymax = 1000
  zmax = 0
  elem_type = QUAD4
  uniform_refine = 2
[]

[GlobalParams]
  op_num = 4
  var_name_base = 'gr'
[]

[Variables]
  [./PolycrystalVariables]
  [../]
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    rand_seed = 102
    grain_num = 4
    coloring_algorithm = bt
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[AuxVariables]
  [./bnds]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./PolycrystalKernel]
  [../]
[]

[AuxKernels]
  [./BndsCalc]
    type = BndsCalcAux
    variable = bnds
    execute_on = 'timestep_end'
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./Moly_GB]
    type = GBEvolution
    time_scale = 1.0
    GBmob0 = 3.986e-6
    T = 500 # K
    wGB = 60 # nm
    Q = 1.0307
    GBenergy = 2.4
  [../]
[]

[Postprocessors]
  [./gr1area]
    type = ElementIntegralVariablePostprocessor
    variable = gr1
    execute_on = 'initial timestep_end'
  [../]
  [./avg_grain_vol]
    type = AverageGrainVolume
    grain_num = 4
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = 'NEWTON'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_tol = 1.0e-4
  l_max_its = 30
  nl_max_its = 20
  nl_rel_tol = 1.0e-9
  start_time = 0.0
  num_steps = 2
  dt = 4
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/frictional_contact/sliding_elastic_blocks_2d/sm/sliding_elastic_blocks_2d_sm.i

[Mesh]
  file = sliding_elastic_blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    diag_save_in_disp_y = diag_saved_y
    diag_save_in_disp_x = diag_saved_x
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip]
    type = PenetrationAux
    variable = accum_slip
    execute_on = timestep_end
    quantity = accumulated_slip
    boundary = 3
    paired_boundary = 2
  [../]
  [./tangential_force_x]
    type = PenetrationAux
    variable = tang_force_x
    execute_on = timestep_end
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./tangential_force_y]
    type = PenetrationAux
    variable = tang_force_y
    execute_on = timestep_end
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.005
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e7
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.05
  num_steps = 1000
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-09
  dtmin = 0.01
  l_tol = 1e-3

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    system = constraint
    friction_coefficient = '0.25'
    penalty = 1e6
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    slave = 3
    master = 2
  [../]
[]

modules/tensor_mechanics/test/tests/cp_user_object/linesearch.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
  [../]
  [./uy]
  [../]
  [./uz]
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./gss]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss
    property = state_var_gss
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = tdisp
  [../]
[]

[UserObjects]
  [./slip_rate_gss]
    type = CrystalPlasticitySlipRateGSS
    variable_size = 12
    slip_sys_file_name = input_slip_sys.txt
    num_slip_sys_flowrate_props = 2
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    uo_state_var_name = state_var_gss
  [../]
  [./slip_resistance_gss]
    type = CrystalPlasticitySlipResistanceGSS
    variable_size = 12
    uo_state_var_name = state_var_gss
  [../]
  [./state_var_gss]
    type = CrystalPlasticityStateVariable
    variable_size = 12
    groups = '0 4 8 12'
    group_values = '60.8 60.8 60.8'
    uo_state_var_evol_rate_comp_name = state_var_evol_rate_comp_gss
    scale_factor = 1.0
  [../]
  [./state_var_evol_rate_comp_gss]
    type = CrystalPlasticityStateVarRateComponentGSS
    variable_size = 12
    hprops = '1.0 541.5 109.8 2.5'
    uo_slip_rate_name = slip_rate_gss
    uo_state_var_name = state_var_gss
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainUObasedCP
    stol = 1e-2
    tan_mod_type = exact
    maximum_substep_iteration = 200
    use_line_search = true
    min_line_search_step_size = 0.01
    uo_slip_rates = 'slip_rate_gss'
    uo_slip_resistances = 'slip_resistance_gss'
    uo_state_vars = 'state_var_gss'
    uo_state_var_evol_rate_comps = 'state_var_evol_rate_comp_gss'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'ux uy uz'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
  [../]
  [./gss]
    type = ElementAverageValue
    variable = gss
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.02
  num_steps = 10
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/solid_mechanics/hoop_stress/hoop_stress.i

#
# Hoop stress
#
# This test checks that hoop stress is calculated correctly for three orientations.
# 1. A hoop centered at (20,20,20) with vector (0,0,1)
# 2. A hoop centered at (-25,20,20) with vector (0,1,0)
# 3. A hoop centered at (-20,-20,20) with vector (1,0,0)
# All three have radius = 20, t = 1.
#
# Hoop stress should be P*r/t -> 1e3*20/1 = 20e3
#
# The output hoop stress is close to this value (nonlinear geometry is on) for all
# elements.
#

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = hoops.e
[]

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = 1e3
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hoop1]
    order = CONSTANT
    family = MONOMIAL
    block = 1
  [../]
  [./hoop2]
    order = CONSTANT
    family = MONOMIAL
    block = 2
  [../]
  [./hoop3]
    order = CONSTANT
    family = MONOMIAL
    block = 3
  [../]
  [./radial1]
    order = CONSTANT
    family = MONOMIAL
    block = 1
  [../]
  [./radial2]
    order = CONSTANT
    family = MONOMIAL
    block = 2
  [../]
  [./radial3]
    order = CONSTANT
    family = MONOMIAL
    block = 3
  [../]
  [./axial1]
    order = CONSTANT
    family = MONOMIAL
    block = 1
  [../]
  [./axial2]
    order = CONSTANT
    family = MONOMIAL
    block = 2
  [../]
  [./axial3]
    order = CONSTANT
    family = MONOMIAL
    block = 3
  [../]

[] # AuxVariables

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
    execute_on = timestep_end
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
    execute_on = timestep_end
  [../]
  [./hoop1]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = HoopStress
    variable = hoop1
    block = 1
    point1 = '20 20 -4'
    point2 = '20 20 47'
    execute_on = timestep_end
  [../]
  [./hoop2]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = HoopStress
    variable = hoop2
    block = 2
    point1 = '-25 12 20'
    point2 = '-25 10 20'
    execute_on = timestep_end
  [../]
  [./hoop3]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = HoopStress
    variable = hoop3
    block = 3
    point1 = '0 -20 20'
    point2 = '16 -20 20'
    execute_on = timestep_end
  [../]
  [./radial1]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = RadialStress
    variable = radial1
    block = 1
    point1 = '20 20 -4'
    point2 = '20 20 47'
    execute_on = timestep_end
  [../]
  [./radial2]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = RadialStress
    variable = radial2
    block = 2
    point1 = '-25 12 20'
    point2 = '-25 10 20'
    execute_on = timestep_end
  [../]
  [./radial3]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = RadialStress
    variable = radial3
    block = 3
    point1 = '0 -20 20'
    point2 = '16 -20 20'
    execute_on = timestep_end
  [../]
  [./axial1]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = AxialStress
    variable = axial1
    block = 1
    point1 = '20 20 -4'
    point2 = '20 20 47'
    execute_on = timestep_end
  [../]
  [./axial2]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = AxialStress
    variable = axial2
    block = 2
    point1 = '-25 12 20'
    point2 = '-25 10 20'
    execute_on = timestep_end
  [../]
  [./axial3]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = AxialStress
    variable = axial3
    block = 3
    point1 = '0 -20 20'
    point2 = '16 -20 20'
    execute_on = timestep_end
  [../]

[] # AuxKernels

[BCs]

  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = '300 11'
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = '200 12'
    value = 0
  [../]
  [./fix_z]
    type = DirichletBC
    variable = disp_z
    boundary = '100 13'
    value = 0
  [../]

  [./Pressure]
    [./internal_pressure]
      boundary = 1
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
    [../]
  [../]

[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.35
    block = '1 2 3'
  [../]
  [./small_strain]
    type = ComputeIncrementalSmallStrain
    block = '1 2 3'
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2 3'
  [../]
[] # Materials

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew -ksp_gmres_modifiedgramschmidt'
  petsc_options_iname = '-ksp_gmres_restart -pc_type  -pc_hypre_type'
  petsc_options_value = '201                 hypre     boomeramg'


  line_search = 'none'

  l_tol = 1e-8
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-14

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[] # Executioner

[Outputs]
  exodus = true
  file_base = hoop_stress_out
[] # Outputs

test/tests/multiapps/full_solve_multiapp_reset/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Problem]
  kernel_coverage_check = false
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [full_solve]
    type = FullSolveMultiApp
    execute_on = initial
    positions = '0 0 0'
    input_files = sub.i
    reset_apps = '0'
    reset_time = 1
  [../]
[]

modules/combined/test/tests/ring_contact/sm/ring_contact_sm.i

#
# A test of contact with quadratic (Hex20) elements
#
# A stiff ring is pushed into a soft base.  The base shows a circular impression.
#

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = false
[]

[Mesh]
  file = ring_contact.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Functions]
  [./ring_y]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 1'
    scale_factor = -0.2
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Contact]
  [./dummy_name]
    master = 3
    slave = 2
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    penalty = 1e3
    tension_release = -1
    system = Constraint
  [../]
[]

[BCs]
  [./plane]
    type = DirichletBC
    variable = disp_z
    boundary = 10
    value = 0.0
  [../]

  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]

  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]

  [./ring_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./ring_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = ring_y
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    formulation = Nonlinear3D

    block = 1
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stiffStuff2]
    type = Elastic
    formulation = Nonlinear3D

    block = 2

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e3
    poissons_ratio = 0.3
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'lu       101'
  line_search = 'none'

  nl_rel_tol = 1.e-10
  l_max_its = 100
  nl_max_its = 10
  dt = 0.1
  end_time = 0.5

  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/axisymmetric_2d3d_solution_function/3dy.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = 3dy.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./hoop_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = 2d_out.e
    system_variables = 'disp_x disp_y temp'
  [../]
[]

[Functions]
  [./soln_func_temp]
    type = Axisymmetric2D3DSolutionFunction
    solution = soln
    from_variables = 'temp'
  [../]
  [./soln_func_disp_x]
    type = Axisymmetric2D3DSolutionFunction
    solution = soln
    from_variables = 'disp_x disp_y'
    component = 0
  [../]
  [./soln_func_disp_y]
    type = Axisymmetric2D3DSolutionFunction
    solution = soln
    from_variables = 'disp_x disp_y'
    component = 1
  [../]
  [./soln_func_disp_z]
    type = Axisymmetric2D3DSolutionFunction
    solution = soln
    from_variables = 'disp_x disp_y'
    component = 2
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    volumetric_locking_correction = true
    add_variables  = true
    incremental = true
    strain = FINITE
    eigenstrain_names = thermal_expansion
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress'
  [../]
[]

[AuxKernels]
  [./t_soln_aux]
    type = FunctionAux
    variable = temp
    block = '1 2'
    function = soln_func_temp
  [../]
  [./hoop_stress]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = hoop_stress
    scalar_type = HoopStress
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./x_soln_bc]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = '1 2'
    function = soln_func_disp_x
  [../]
  [./y_soln_bc]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = '1 2'
    function = soln_func_disp_y
  [../]
  [./z_soln_bc]
    type = FunctionDirichletBC
    variable = disp_z
    preset = false
    boundary = '1 2'
    function = soln_func_disp_z
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 193.05e9
    poissons_ratio = 0.3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]

  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    block = '1 2'
    thermal_expansion_coeff = 13e-6
    stress_free_temperature = 295.00
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]

  [./density]
    type = Density
    block = '1'
    density = 8000.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-ksp_snes_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = ' 201                hypre    boomeramg      4'
  line_search = 'none'
  l_max_its = 25
  nl_max_its = 20
  nl_rel_tol = 1e-10
  l_tol = 1e-2

  start_time = 0.0
  dt = 1
  end_time = 1
  dtmin = 1
[]

[Outputs]
  file_base = 3dy_out
  exodus = true
  [./console]
    type = Console
    max_rows = 25
  [../]
[]

modules/contact/test/tests/mechanical-small-problem/mortar-mech.i

[Mesh]
  displacements = 'disp_x disp_y'
  [file]
    type = FileMeshGenerator
    file = mesh.e
  []
  [./master]
    type = LowerDBlockFromSidesetGenerator
    sidesets = '2'
    new_block_id = '20'
    input = file
  [../]
  [./slave]
    type = LowerDBlockFromSidesetGenerator
    sidesets = '1'
    new_block_id = '10'
    input = master
  [../]
[]

[Problem]
  kernel_coverage_check = false
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
  [./lambda]
    block = '10'
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'outside_left'
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'outside_left'
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'outside_right'
    function = '-5e-3 * t'
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'outside_right'
    function = 0
  [../]
[]

[Kernels]
  [disp_x]
    type = Diffusion
    variable = disp_x
    block = '1 2'
  []
  [disp_y]
    type = Diffusion
    variable = disp_y
    block = '1 2'
  []
[]

[Debug]
  show_var_residual_norms = 1
[]

[Constraints]
  [lm]
    type = NormalMortarLMMechanicalContact
    master_boundary = '2'
    slave_boundary = '1'
    master_subdomain = '20'
    slave_subdomain = '10'
    variable = lambda
    slave_variable = disp_x
    slave_disp_y = disp_y
    use_displaced_mesh = true
    compute_primal_residuals = false
  []
  [x]
    type = NormalMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '1'
    master_subdomain = '20'
    slave_subdomain = '10'
    variable = lambda
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [y]
    type = NormalMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '1'
    master_subdomain = '20'
    slave_subdomain = '10'
    variable = lambda
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]


[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  solve_type = PJFNK
  type = Transient
  num_steps = 10
  dt = 1
  dtmin = 1
  petsc_options_iname = '-pc_type -snes_linesearch_type -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       basic                 NONZERO               1e-15'
[]

[Outputs]
  exodus = true
  [dofmap]
    type = DOFMap
    execute_on = 'initial'
  []
[]

test/tests/multiapps/sub_cycling/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/xfem/test/tests/solid_mechanics_basic/sm/edge_crack_3d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.2
  elem_type = HEX8
[]

[UserObjects]
  [./square_cut_uo]
    type = RectangleCutUserObject
    cut_data = ' -0.001 0.5 -0.001
                  0.401 0.5 -0.001
                  0.401 0.5  0.201
                 -0.001 0.5  0.201'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
   order = CONSTANT
    family = MONOMIAL
  [../]
[]

[DomainIntegral]
  integrals = 'Jintegral InteractionIntegralKI'
  crack_front_points = '0.4 0.5 0.0
                        0.4 0.5 0.1
                        0.4 0.5 0.2'
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '0.2'
  radius_outer = '0.4'
  poissons_ratio = 0.3
  youngs_modulus = 207000
  block = 0
  solid_mechanics = true
  incremental = true
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
    block = 0
  [../]
[]

[Functions]
  [./top_trac_y]
    type = ConstantFunction
    value = 10
  [../]
[]


[BCs]
  [./top_y]
    type = FunctionNeumannBC
    boundary = top
    variable = disp_y
    function = top_trac_y
  [../]
  [./bottom_x]
    type = DirichletBC
    boundary = bottom
    variable = disp_x
    value = 0.0
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = bottom
    variable = disp_y
    value = 0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    boundary = bottom
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = Elastic
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    poissons_ratio = 0.3
    youngs_modulus = 207000
    compute_JIntegral = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 1.0
[]

[Outputs]
  file_base = edge_crack_3d_out
  execute_on = 'timestep_end'
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest12.i

# 2D, concave block
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 8
  ny = 8
  xmin = 0
  xmax = 4
  ymin = 0
  ymax = 4
[]

[MeshModifiers]
  [./mark]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '0.9 0.9 0'
    top_right = '3.1 3.1 0'
  [../]
  [./delete]
    type = BlockDeleter
    block_id = 1
    depends_on = mark
    new_boundary = cut_surface
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./outer]
    type = DirichletBC
    variable = u
    boundary = 'top bottom left right'
    value = 1
  [../]
  [./inner]
    type = DirichletBC
    variable = u
    boundary = cut_surface
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/change_over_time/change_over_time.i

# This test tests the ChangeOverTimePostprocessor, which computes the change
# in a postprocessor value with respect to the previous value or with respect to
# the initial value. This test creates a time-dependent function postprocessor
# and then computes its change over a timestep. The FE problem used here is a
# dummy problem and has no effect on the test.

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 5
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./time_derivative]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient

  start_time = 0.0
  dt = 1.0
  num_steps = 2
[]

[Functions]
  [./my_function]
    type = ParsedFunction
    value = '1 + t * t'
  [../]
[]

[Postprocessors]
  [./my_postprocessor]
    type = FunctionValuePostprocessor
    function = my_function
    execute_on = 'initial timestep_end'
  [../]
  [./change_over_time]
    type = ChangeOverTimePostprocessor
    postprocessor = my_postprocessor
    change_with_respect_to_initial = false
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  file_base = 'change_over_time_previous'
  csv = true
[]

test/tests/controls/time_periods/aux_kernels/control.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux0]
  [../]
  [./aux1]
  [../]
[]

[Functions]
  [./func]
    type = ParsedFunction
    value = t*x*y
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./aux0]
    type = FunctionAux
    variable = aux0
    function = func
  [../]
  [./aux1]
    type = FunctionAux
    variable = aux1
    function = func
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[Controls]
  [./damping_control]
    type = TimePeriod
    disable_objects    = 'AuxKernels::aux0 AuxKernels::aux1'
    start_time         = '0.25             0.55'
    end_time           = '0.65             0.75'
    execute_on         = 'initial timestep_begin'
  [../]
[]

test/tests/transfers/multiapp_variable_value_sample_transfer/pp_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./pp_sub]
    app_type = MooseTestApp
    positions = '0.5 0.5 0 0.7 0.7 0'
    execute_on = timestep_end
    type = TransientMultiApp
    input_files = pp_sub.i
  [../]
[]

[Transfers]
  [./sample_pp_transfer]
    source_variable = u
    direction = to_multiapp
    postprocessor = from_master
    type = MultiAppVariableValueSamplePostprocessorTransfer
    multi_app = pp_sub
  [../]
[]

test/tests/parser/cli_multiapp_group/dt_from_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.2

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

[MultiApps]
  [./sub_left]
    positions = '0 0 0  0.5 0.5 0  0.6 0.6 0  0.7 0.7 0'
    type = TransientMultiApp
    input_files = 'dt_from_master_sub.i'
    app_type = MooseTestApp
  [../]

  [./sub_right]
    positions = '0 0 0  0.5 0.5 0  0.6 0.6 0  0.7 0.7 0'
    type = TransientMultiApp
    input_files = 'dt_from_master_sub.i'
    app_type = MooseTestApp
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cwp11.i

# Capped weak-plane plasticity
# checking jacobian for shear + tensile failure with hardening
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningExponential
    value_0 = 1
    value_residual = 2
    rate = 1
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0
    value_residual = 0.5
    rate = 2
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningExponential
    value_0 = 0.1
    value_residual = 0.05
    rate = 3
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningExponential
    value_0 = 100
    value_residual = 100
    rate = 1
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0
    internal_0 = -2
    internal_limit = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 1.0
    shear_modulus = 2.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 0 1  0 1 -1.5'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    tangent_operator = nonlinear
  [../]
  [./mc]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 0
    smoothing_tol = 1
    yield_function_tol = 1E-10
    perfect_guess = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/chemical_reactions/test/tests/desorption/mollified_langmuir_jac_de2.i

# testing desorption jacobian, with large mollification parameter
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[Variables]
  [./pressure]
  [../]
  [./conc]
  [../]
[]

[ICs]
  [./p_ic]
    type = RandomIC
    variable = pressure
    min = 2
    max = 3
  [../]
  [./conc_ic]
    type = RandomIC
    variable = conc
    min = -1
    max = 1
  [../]
[]


[Kernels]
  [./flow_from_matrix]
    type = DesorptionFromMatrix
    variable = conc
    pressure_var = pressure
  [../]
  [./flux_to_porespace]
    type = DesorptionToPorespace
    variable = pressure
    conc_var = conc
  [../]
[]

[Materials]
  [./mollified_langmuir_params]
    type = MollifiedLangmuirMaterial
    block = 0
    one_over_desorption_time_const = 0.813
    one_over_adsorption_time_const = 0
    langmuir_density = 0.34
    langmuir_pressure = 1.5
    conc_var = conc
    pressure_var = pressure
    mollifier = 10.0
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = langmuir_jac1
[]

test/tests/time_integrators/actually_explicit_euler_verification/ee-1d-quadratic-neumann.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -1
  xmax = 1
  nx = 10
  elem_type = EDGE3
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = x*x-2*t+t*x*x
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*x*x
  [../]

  [./left_bc_fn]
    type = ParsedFunction
    value = -t*2*x
  [../]
  [./right_bc_fn]
    type = ParsedFunction
    value = t*2*x
  [../]
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./abs]
    type = Reaction
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./left]
    type = FunctionNeumannBC
    variable = u
    boundary = '0'
    function = left_bc_fn
  [../]

  [./right]
    type = FunctionNeumannBC
    variable = u
    boundary = '1'
    function = right_bc_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  l_tol = 1e-12
  start_time = 0.0
  num_steps = 10
  dt = 0.001

  [./TimeIntegrator]
    type = ActuallyExplicitEuler
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform16.i

# Using CappedMohrCoulomb with compressive failure only
# A single element is incrementally compressed in the z and x directions
# This causes the return direction to be along the hypersurface sigma_I = sigma_II
# and the resulting stresses are checked to lie on the expected yield surface

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-0.4*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-0.4*z*t'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 3
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 0.1
  type = Transient
[]


[Outputs]
  file_base = small_deform16
  csv = true
[]

modules/phase_field/test/tests/actions/Nonconserved_1var.i

#
# Test the parsed function free enery Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  xmax = 40
  ymax = 40
  elem_type = QUAD
[]

[Modules]
  [./PhaseField]
    [./Nonconserved]
      [./eta]
        free_energy = F
        kappa = 2.0
        mobility = 1.0
        variable_mobility = false
      [../]
    [../]
  [../]
[]

[ICs]
  [./InitialCondition]
    type = SmoothCircleIC
    variable = eta
    x1 = 20.0
    y1 = 20.0
    radius = 6.0
    invalue = 0.9
    outvalue = 0.1
    int_width = 3.0
  [../]
[]

[Materials]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = F
    args = 'eta'
    function = '2 * eta^2 * (1-eta)^2 - 0.2*eta'
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'NEWTON'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  num_steps = 10
  dt = 1.0
[]

[Outputs]
  exodus = true
[]

test/tests/materials/output/output_block_displaced.i

[Mesh]
  type = FileMesh
  file = rectangle.e
  dim = 2
  uniform_refine = 1
  displacements = 'disp disp'
[]

[Functions]
  [./disp_fn]
    type = ParsedFunction
    value = x
  [../]
[]

[AuxVariables]
  [./disp]
  [../]
[]

[AuxKernels]
  [./disp_ak]
    type = FunctionAux
    variable = disp
    function = disp_fn
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.5
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 2
  [../]
[]

[Materials]
  [./block_1]
    type = OutputTestMaterial
    block = 1
    output_properties = 'real_property tensor_property'
    outputs = exodus
    variable = u
  [../]
  [./block_2]
    type = OutputTestMaterial
    block = 2
    output_properties = 'vector_property tensor_property'
    outputs = exodus
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./exodus]
    type = Exodus
    use_displaced = true
    sequence = false
  [../]
[]

modules/phase_field/test/tests/phase_field_crystal/PFCTrad/pfct_newton_split1_asm1_10.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  xmax = 8
  ymax = 8
[]

[Variables]
  [./n]
    [./InitialCondition]
      type = RandomIC
      min = -1
      max = 4
    [../]
  [../]
  [./u]
    scaling = 1e2
  [../]
  [./v]
    scaling = 1e1
  [../]
[]

[Kernels]
  [./ndot]
    type = TimeDerivative
    variable = n
  [../]
  [./n_bulk]
    type = CHBulkPFCTrad
    variable = n
  [../]
  [./u_term]
    type = MatDiffusion
    variable = n
    v = u
    diffusivity = C2
  [../]
  [./v_term]
    type = MatDiffusion
    variable = n
    v = v
    diffusivity = C4
  [../]
  [./u_rctn]
    type = Reaction
    variable = u
  [../]
  [./u_gradn]
    type = LaplacianSplit
    variable = u
    c = n
  [../]
  [./v_rctn]
    type = Reaction
    variable = v
  [../]
  [./v_gradu]
    type = LaplacianSplit
    variable = v
    c = u
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./PFCTrad]
    type = PFCTradMaterial
    order = 4
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'

  l_max_its = 100
  l_tol = 1e-04
  nl_rel_tol = 1e-09
  nl_abs_tol = 1e-11

  splitting = 'nuv'
  petsc_options = '-snes_view'

  num_steps = 2
  dt = 0.1
[]

[Splits]
  [./nuv]
    splitting       = 'v nu'
    splitting_type  = schur
    schur_type      = full
    schur_pre       = Sp
    #petsc_options = '-dm_view'
  [../]
  [./nu]
    vars = 'n u'
    petsc_options = '-ksp_monitor'
    petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_asm_nblocks -pc_asm_overlap  -sub_pc_type'
    petsc_options_value =  '              101      asm              10               1            lu'
  [../]
  [./v]
    vars = 'v'
    #petsc_options = '-ksp_monitor'
    petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
    petsc_options_value =  'asm         101   preonly   lu      0'
    #full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/check_error/increment_options_sm.i

# Deprectaed: increment_options is changed to decomposition_method as MooseEnum in
# tensor mechanics, and the error is generated by the MooseEnum system.

[Mesh]
  file = cube.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./goo]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = 1e6
    poissons_ratio = 0.0

    increment_calculation = my_favorite
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

test/tests/restart/kernel_restartable/kernel_restartable_custom_name.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = RestartDiffusion
    variable = u
    coef = 1
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 1e-2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  [./restart]
    type = Checkpoint
    num_files = 100
  [../]
[]

[Problem]
  name = "SomeCrazyName" # Testing this
[]

test/tests/misc/serialized_solution/adapt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./aux_serialized]
    type = TestSerializedSolution
    system = aux
  [../]
  [./nl_serialized]
    type = TestSerializedSolution
    system = nl
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Adaptivity]
  marker = box_refine
  [./Markers]
    [./box_refine]
      type = BoxMarker
      bottom_left = '0.2 0.2 0'
      top_right = '0.8 0.8 0'
      inside = REFINE
      outside = DONT_MARK
    [../]
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/kernels/conservative_advection/no_upwinding_1D.i

# ConservativeAdvection with upwinding_type = None
# Apply a velocity = (1, 0, 0) and see a pulse advect to the right
# Note there are overshoots and undershoots
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [./u]
  [../]
[]

[BCs]
  [./u_injection_left]
    type = InflowBC
    boundary = left
    variable = u
    velocity = '1 0 0'
    inlet_conc = 1
  [../]
[]

[Kernels]
  [./udot]
    type = TimeDerivative
    variable = u
  [../]
  [./advection]
    type = ConservativeAdvection
    variable = u
    velocity = '1 0 0'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = LINEAR
  dt = 0.1
  end_time = 1
  l_tol = 1E-14
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/contact_verification/patch_tests/brick_2/brick2_mu_0_2_pen.i

[GlobalParams]
  volumetric_locking_correction = true
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = brick2_mesh.e
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./saved_z]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./diag_saved_z]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./inc_slip_z]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip_z]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
  [./tang_force_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
    save_in = 'saved_x saved_y saved_z'
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
    execute_on = timestep_end
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_x
  [../]
  [./disp_x26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_x
  [../]
  [./disp_y7]
    type = NodalVariableValue
    nodeid = 6
    variable = disp_y
  [../]
  [./disp_y26]
    type = NodalVariableValue
    nodeid = 25
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./bot_strain]
    type = ComputeFiniteStrain
    block = '1'
  [../]
  [./bot_stress]
    type = ComputeFiniteStrainElasticStress
    block = '1'
  [../]
  [./top_elas_tens]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./top_strain]
    type = ComputeFiniteStrain
    block = '2'
  [../]
  [./top_stress]
    type = ComputeFiniteStrainElasticStress
    block = '2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-9
  nl_rel_tol = 1e-8
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./y_disp]
    type = NodalValueSampler
    variable = disp_y
    boundary = '1 3 4 5'
    sort_by = id
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = id
  [../]
[]

[Outputs]
  file_base = brick2_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = brick2_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x7 disp_y7 disp_x26 disp_y26 stress_yy stress_zz top_react_x top_react_y x_disp y_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+7
  [../]
[]

modules/tensor_mechanics/test/tests/eigenstrain/reducedOrderRZLinear.i

#
# This test checks whether the ComputeReducedOrderEigenstrain is functioning properly.
#
# If instead of 'reduced_eigenstrain', 'thermal_eigenstrain' is given to
# eigenstrain_names in the Modules/TensorMechanics/Master/all block, the output will be
# quite different.
#
# Open the reducedOrderRZLinear_out_hydro_0001.csv file and plot the hydro variables as
# a function of x.  For the reduced order case, the values are smooth across each of the
# two elements with a jump upward from the left element to the right element.  However,
# when not using 'reduced_order_eigenstrain', a jump downward appears from the left
# element to the right element.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = false
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 1
  xmax = 3
  xmin = 1
  ymax = 1
  ymin = 0
  #second_order = true
[]

[Functions]
  [./tempLinear]
    type = ParsedFunction
    value = '715-5*x'
  [../]
  [./tempQuadratic]
    type = ParsedFunction
    value = '2.5*x*x-15*x+722.5'
  [../]
  [./tempCubic]
    type = ParsedFunction
    value = '-1.25*x*x*x+11.25*x*x-33.75*x+733.75'
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 700
  [../]
[]

[AuxVariables]
  [./hydro_constant]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydro_first]
    order = FIRST
    family = MONOMIAL
  [../]
  [./hydro_second]
    order = SECOND
    family = MONOMIAL
  [../]
  [./sxx_constant]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./sxx_first]
    order = FIRST
    family = MONOMIAL
  [../]
  [./sxx_second]
    order = SECOND
    family = MONOMIAL
  [../]
  [./szz_constant]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./szz_first]
    order = FIRST
    family = MONOMIAL
  [../]
  [./szz_second]
    order = SECOND
    family = MONOMIAL
  [../]
  [./temp2]
    order = FIRST
    family = LAGRANGE
    initial_condition = 700
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        add_variables = true
        strain = SMALL
        incremental = true
        temperature = temp2
        eigenstrain_names = 'reduced_eigenstrain' #'thermal_eigenstrain'
      [../]
    [../]
  [../]
[]

[Kernels]
  [./heat]
    type = Diffusion
    variable = temp
  [../]
[]

[AuxKernels]
  [./hydro_constant_aux]
    type = RankTwoScalarAux
    variable = hydro_constant
    rank_two_tensor = stress
    scalar_type = Hydrostatic
  [../]
  [./hydro_first_aux]
    type = RankTwoScalarAux
    variable = hydro_first
    rank_two_tensor = stress
    scalar_type = Hydrostatic
  [../]
  [./hydro_second_aux]
    type = RankTwoScalarAux
    variable = hydro_second
    rank_two_tensor = stress
    scalar_type = Hydrostatic
  [../]
  [./sxx_constant_aux]
    type = RankTwoAux
    variable = sxx_constant
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./sxx_first_aux]
    type = RankTwoAux
    variable = sxx_first
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./sxx_second_aux]
    type = RankTwoAux
    variable = sxx_second
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./szz_constant_aux]
    type = RankTwoAux
    variable = szz_constant
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
  [./szz_first_aux]
    type = RankTwoAux
    variable = szz_first
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
  [./szz_second_aux]
    type = RankTwoAux
    variable = szz_second
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
  [./temp2]
    type = FunctionAux
    variable = temp2
    function = tempLinear
    execute_on = timestep_begin
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom top'
    value = 0.0
  [../]

  [./temp_right]
    type = DirichletBC
    variable = temp
    boundary = right
    value = 700
  [../]
  [./temp_left]
    type = DirichletBC
    variable = temp
    boundary = left
    value = 710
  [../]
[]


[Materials]
  [./fuel_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1
    poissons_ratio = 0
  [../]
  [./fuel_thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1
    temperature = temp2
    stress_free_temperature = 700.0
    eigenstrain_name = 'thermal_eigenstrain'
  [../]
  [./reduced_order_eigenstrain]
    type = ComputeReducedOrderEigenstrain
    input_eigenstrain_names = 'thermal_eigenstrain'
    eigenstrain_name = 'reduced_eigenstrain'
  [../]
[]


[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew '
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type'
  petsc_options_value = '70 hypre boomeramg'

  num_steps = 1
  nl_rel_tol = 1e-8 #1e-12
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
[]

[VectorPostprocessors]
  [./hydro]
    type = LineValueSampler
    num_points = 100
    start_point = '1 0.07e-3 0'
    end_point = '3 0.07e-3 0'
    sort_by = x
    variable = 'hydro_constant hydro_first hydro_second temp2 disp_x disp_y'
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/chemical_reactions/test/tests/exceptions/missing_sto3.i

# Missing stoichiometric coefficient in AqueousEquilibriumRxnAux AuxKernel
# Simple reaction-diffusion example without using the action.
# In this example, two primary species a and b diffuse towards each other from
# opposite ends of a porous medium, reacting when they meet to form a mineral
# precipitate
# This simulation is identical to 2species.i, but explicitly includes the AuxVariables,
# AuxKernels, and Kernels that the action in 2species.i adds

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[AuxVariables]
  [./mineral]
  [../]
[]

[AuxKernels]
  [./mineral_conc]
    type = KineticDisPreConcAux
    variable = mineral
    sto_v = 1
    v = 'a b'
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = porosity
    prop_values = 0.2
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform22.i

# Mohr-Coulomb only
# apply stretches in x direction and smaller stretches in the y direction
# to observe return to the MC plane
# This tests uses hardening of the cohesion.  The returned configuration
# should obey
# 0 = 0.5 * (Smax - Smin) + 0.5 * (Smax + Smin) * sin(phi) - C cos(phi)
# which allows inference of C.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.4E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.1E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 6
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_max]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_mid]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_min]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningCubic
    value_0 = 10
    value_residual = 20
    internal_limit = 5E-6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 30
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1E7
    poissons_ratio = 0.3
  [../]
  [./mc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    smoothing_tol = 0
    yield_function_tol = 1.0E-9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform_hard21
  csv = true
[]

modules/porous_flow/test/tests/jacobian/waterncg_liquid.i

# Tests correct calculation of properties derivatives in PorousFlowWaterNCG
# for conditions that give a single liquid phase

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./pgas]
  [../]
  [./z]
  [../]
[]

[ICs]
  [./pgas]
    type = RandomIC
    min = 6e6
    max = 8e6
    variable = pgas
  [../]
  [./z]
    type = RandomIC
    min = 0.01
    max = 0.05
    variable = z
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    variable = pgas
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    variable = z
    fluid_component = 1
  [../]
  [./adv0]
    type = PorousFlowAdvectiveFlux
    variable = pgas
    fluid_component = 0
  [../]
  [./adv1]
    type = PorousFlowAdvectiveFlux
    variable = z
    fluid_component = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas z'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
    pc_max = 1e4
  [../]
  [./fs]
    type = PorousFlowWaterNCG
    water_fp = water
    gas_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2]
      type = CO2FluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 50
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = z
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  dt = 1
  end_time = 1
  nl_abs_tol = 1e-12
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[AuxVariables]
  [./sgas]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./sgas]
    type = PorousFlowPropertyAux
    property = saturation
    phase = 1
    variable = sgas
  [../]
[]

[Postprocessors]
  [./sgas_min]
    type = ElementExtremeValue
    variable = sgas
    value_type = min
  [../]
  [./sgas_max]
    type = ElementExtremeValue
    variable = sgas
    value_type = max
  [../]
[]

test/tests/functions/solution_function/solution_function_scale_mult.i

# checking scale_multiplier
[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = -1
  xmax = 1
  nx = 3
  ymin = -1
  ymax = 1
  ny = 3
[]

[UserObjects]
  [./solution_uo]
    type = SolutionUserObject
    mesh = square_with_u_equals_x.e
    timestep = 1
    system_variables = u
    scale_multiplier = '2 2 0'
    transformation_order = scale_multiplier
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./u_init]
    type = FunctionIC
    variable = u
    function = solution_fcn
  [../]
[]

[Functions]
  [./solution_fcn]
    type = SolutionFunction
    from_variable = u
    solution = solution_uo
  [../]
[]

[Kernels]
  [./diff]
    type = TimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 1
  end_time = 1
  dt = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = solution_function_scale_mult
  exodus = true
[]

modules/tensor_mechanics/test/tests/crystal_plasticity/crysp_fileread.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx=1
  ny=1
  nz=1
  xmin=0.0
  xmax=1.0
  ymin=0.0
  ymax=1.0
  zmin=0.0
  zmax=1.0
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    block = 0
  [../]
  [./disp_y]
    block = 0
  [../]
  [./disp_z]
    block = 0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./rotout]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./gss1]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = 'initial timestep_end'
    block = 0
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss1
    property = gss
    index = 0
    execute_on = 'initial timestep_end'
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCrystalPlasticity
    block = 0
    gtol = 1e-2
    slip_sys_file_name = input_slip_sys.txt
    slip_sys_res_prop_file_name = input_slip_sys_res.txt
    slip_sys_flow_prop_file_name = input_slip_sys_flow_prop.txt
    hprops = '1.0 541.5 60.8 109.8 2.5'
    nss = 12
    intvar_read_type = slip_sys_res_file
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    execute_on = 'initial timestep_end'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    execute_on = 'initial timestep_end'
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
    execute_on = 'initial timestep_end'
  [../]
  [./gss1]
    type = ElementAverageValue
    variable = gss1
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 0.05
  dtmax = 10.0
  dtmin = 0.05

  num_steps = 10
[]

[Outputs]
  file_base = crysp_fileread_out
  exodus = true
[]

test/tests/transfers/multiapp_variable_value_sample_transfer/master_quad.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./master_aux]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./func]
    type = ParsedFunction
    value = x*y*t
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./func_aux]
    type = FunctionAux
    variable = master_aux
    function = func
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./quad]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0.05 0.05 0 0.95 0.05 0 0.05 0.95 0 0.95 0.95 0'
    input_files = quad_sub.i
  [../]
[]

[Transfers]
  [./master_to_sub]
    type = MultiAppVariableValueSamplePostprocessorTransfer
    direction = to_multiapp
    multi_app = quad
    source_variable = master_aux
    postprocessor = pp
  [../]
[]

modules/phase_field/examples/anisotropic_interfaces/snow.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 14
  ny = 14
  xmax = 9
  ymax = 9
  uniform_refine = 3
[]

[Variables]
  [./w]
  [../]
  [./T]
  [../]
[]

[ICs]
  [./wIC]
    type = SmoothCircleIC
    variable = w
    int_width = 0.1
    x1 = 4.5
    y1 = 4.5
    radius = 0.07
    outvalue = 0
    invalue = 1
  [../]
[]

[Kernels]
  [./w_dot]
    type = TimeDerivative
    variable = w
  [../]
  [./anisoACinterface1]
    type = ACInterfaceKobayashi1
    variable = w
    mob_name = M
  [../]
  [./anisoACinterface2]
    type = ACInterfaceKobayashi2
    variable = w
    mob_name = M
  [../]
  [./AllenCahn]
    type = AllenCahn
    variable = w
    mob_name = M
    f_name = fbulk
    args = T
  [../]
  [./T_dot]
    type = TimeDerivative
    variable = T
  [../]
  [./CoefDiffusion]
    type = Diffusion
    variable = T
  [../]
  [./w_dot_T]
    type = CoefCoupledTimeDerivative
    variable = T
    v = w
    coef = -1.8
  [../]
[]

[Materials]
  [./free_energy]
    type = DerivativeParsedMaterial
    f_name = fbulk
    args = 'w T'
    constant_names = pi
    constant_expressions = 4*atan(1)
    function = 'm:=0.9 * atan(10 * (1 - T)) / pi; 1/4*w^4 - (1/2 - m/3) * w^3 + (1/4 - m/2) * w^2'
    derivative_order = 2
    outputs = exodus
  [../]
  [./material]
    type = InterfaceOrientationMaterial
    op = w
  [../]
  [./consts]
    type = GenericConstantMaterial
    prop_names  = 'M'
    prop_values = '3333.333'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      31'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-08
  l_max_its = 30

  end_time = 1

  [./TimeStepper]
    type = IterationAdaptiveDT
    optimal_iterations = 6
    iteration_window = 2
    dt = 0.0005
    growth_factor = 1.1
    cutback_factor = 0.75
  [../]
  [./Adaptivity]
    initial_adaptivity = 3 # Number of times mesh is adapted to initial condition
    refine_fraction = 0.7 # Fraction of high error that will be refined
    coarsen_fraction = 0.1 # Fraction of low error that will coarsened
    max_h_level = 5 # Max number of refinements used, starting from initial mesh (before uniform refinement)
    weight_names = 'w T'
    weight_values = '1 0.5'
  [../]
[]

[Outputs]
  interval = 5
  exodus = true
[]

modules/combined/test/tests/surface_tension_KKS/surface_tension_KKS.i

#
# KKS coupled with elasticity. Physical parameters for matrix and precipitate phases
# are gamma and gamma-prime phases, respectively, in the Ni-Al system.
# Parameterization is as described in L.K. Aagesen et al., Computational Materials
# Science, 140, 10-21 (2017), with isotropic elastic properties in both phases
# and without eigenstrain.
#

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 200
  xmax = 200
[]

[Problem]
  coord_type = RSPHERICAL
[]

[GlobalParams]
  displacements = 'disp_x'
[]

[Variables]
  # order parameter
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]

  # solute concentration
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]

  # chemical potential
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]

  # solute phase concentration (matrix)
  [./cm]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.13
  [../]
  # solute phase concentration (precipitate)
  [./cp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.235
  [../]
[]

[AuxVariables]
  [./energy_density]
    family = MONOMIAL
  [../]
  [./extra_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./extra_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./extra_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[ICs]
  [./eta_ic]
    variable = eta
    type = FunctionIC
    function = ic_func_eta
  [../]
  [./c_ic]
    variable = c
    type = FunctionIC
    function = ic_func_c
  [../]
[]

[Functions]
  [./ic_func_eta]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2+z^2);0.5*(1.0-tanh((r-r0)/delta_eta/sqrt(2.0)))'
    vars = 'delta_eta r0'
    vals = '6.431     100'
  [../]
  [./ic_func_c]
    type = ParsedFunction
    value = 'r:=sqrt(x^2+y^2+z^2);eta_an:=0.5*(1.0-tanh((r-r0)/delta/sqrt(2.0)));0.235*eta_an^3*(6*eta_an^2-15*eta_an+10)+0.13*(1-eta_an^3*(6*eta_an^2-15*eta_an+10))'
    vars = 'delta r0'
    vals = '6.431 100'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    generate_output = 'hydrostatic_stress stress_xx stress_yy stress_zz'
  [../]
[]


[Kernels]

  # enforce c = (1-h(eta))*cm + h(eta)*cp
  [./PhaseConc]
    type = KKSPhaseConcentration
    ca       = cm
    variable = cp
    c        = c
    eta      = eta
  [../]

  # enforce pointwise equality of chemical potentials
  [./ChemPotVacancies]
    type = KKSPhaseChemicalPotential
    variable = cm
    cb       = cp
    fa_name  = f_total_matrix
    fb_name  = f_total_ppt
  [../]

  #
  # Cahn-Hilliard Equation
  #
  [./CHBulk]
    type = KKSSplitCHCRes
    variable = c
    ca       = cm
    fa_name  = f_total_matrix
    w        = w
  [../]

  [./dcdt]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./ckernel]
    type = SplitCHWRes
    mob_name = M
    variable = w
  [../]

  #
  # Allen-Cahn Equation
  #
  [./ACBulkF]
    type = KKSACBulkF
    variable = eta
    fa_name  = f_total_matrix
    fb_name  = f_total_ppt
    w        = 0.0033
    args = 'cp cm'
  [../]
  [./ACBulkC]
    type = KKSACBulkC
    variable = eta
    ca       = cm
    cb       = cp
    fa_name  = f_total_matrix
  [../]
  [./ACInterface]
    type = ACInterface
    variable = eta
    kappa_name = kappa
  [../]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]
[]

[AuxKernels]
  [./extra_xx]
    type = RankTwoAux
    rank_two_tensor = extra_stress
    index_i = 0
    index_j = 0
    variable = extra_xx
  [../]
  [./extra_yy]
    type = RankTwoAux
    rank_two_tensor = extra_stress
    index_i = 1
    index_j = 1
    variable = extra_yy
  [../]
  [./extra_zz]
    type = RankTwoAux
    rank_two_tensor = extra_stress
    index_i = 2
    index_j = 2
    variable = extra_zz
  [../]
  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = mechanical_strain
    index_i = 0
    index_j = 0
    variable = strain_xx
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = mechanical_strain
    index_i = 1
    index_j = 1
    variable = strain_yy
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = mechanical_strain
    index_i = 2
    index_j = 2
    variable = strain_zz
  [../]
[]

[Materials]
  # Chemical free energy of the matrix
  [./fm]
    type = DerivativeParsedMaterial
    f_name = fm
    args = 'cm'
    function = '6.55*(cm-0.13)^2'
  [../]
# Elastic energy of the matrix
  [./elastic_free_energy_m]
    type = ElasticEnergyMaterial
    base_name = matrix
    f_name = fe_m
    args = ' '
  [../]
# Total free energy of the matrix
  [./Total_energy_matrix]
    type = DerivativeSumMaterial
    f_name = f_total_matrix
    sum_materials = 'fm fe_m'
    args = 'cm'
  [../]

  # Free energy of the precipitate phase
  [./fp]
    type = DerivativeParsedMaterial
    f_name = fp
    args = 'cp'
    function = '6.55*(cp-0.235)^2'
  [../]

# Elastic energy of the precipitate
  [./elastic_free_energy_p]
    type = ElasticEnergyMaterial
    base_name = ppt
    f_name = fe_p
    args = ' '
  [../]

# Total free energy of the precipitate
  [./Total_energy_ppt]
    type = DerivativeSumMaterial
    f_name = f_total_ppt
    sum_materials = 'fp fe_p'
    args = 'cp'
  [../]

# Total elastic energy
  [./Total_elastic_energy]
    type = DerivativeTwoPhaseMaterial
    eta = eta
    f_name = f_el_mat
    fa_name = fe_m
    fb_name = fe_p
    outputs = exodus
    W = 0
  [../]

  # h(eta)
  [./h_eta]
    type = SwitchingFunctionMaterial
    h_order = HIGH
    eta = eta
  [../]

  # g(eta)
  [./g_eta]
    type = BarrierFunctionMaterial
    g_order = SIMPLE
    eta = eta
    outputs = exodus
  [../]

  # constant properties
  [./constants]
    type = GenericConstantMaterial
    prop_names  = 'M   L   kappa'
    prop_values = '0.7 0.7 0.1365'
  [../]

  #Mechanical properties
  [./Stiffness_matrix]
    type = ComputeElasticityTensor
    C_ijkl = '74.25 14.525'
    base_name = matrix
    fill_method = symmetric_isotropic
  [../]
  [./Stiffness_ppt]
    type = ComputeElasticityTensor
    C_ijkl = '74.25 14.525'
    base_name = ppt
    fill_method = symmetric_isotropic
  [../]
  [./strain_matrix]
    type = ComputeRSphericalSmallStrain
    base_name = matrix
  [../]
  [./strain_ppt]
    type = ComputeRSphericalSmallStrain
    base_name = ppt
  [../]
  [./stress_matrix]
    type = ComputeLinearElasticStress
    base_name = matrix
  [../]
  [./stress_ppt]
    type = ComputeLinearElasticStress
    base_name = ppt
  [../]
  [./global_stress]
    type = TwoPhaseStressMaterial
    base_A = matrix
    base_B = ppt
  [../]
  [./interface_stress]
    type = ComputeSurfaceTensionKKS
    v = eta
    kappa_name = kappa
    w = 0.0033
  [../]
[]

[BCs]
  [./left_r]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
[]

#
# Precondition using handcoded off-diagonal terms
#
[Preconditioning]
  [./full]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -sub_pc_type   -sub_pc_factor_shift_type'
  petsc_options_value = 'asm       lu            nonzero'

  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-9
  nl_abs_tol = 1.0e-10

  num_steps = 2
  dt = 0.5
[]

[Outputs]
  exodus = true
  [./csv]
    type = CSV
    execute_on = 'final'
  [../]
[]

modules/porous_flow/test/tests/energy_conservation/heat03.i

# The sample is a single unit element, with roller BCs on the sides
# and bottom.  A constant displacement is applied to the top: disp_z = -0.01*t.
# There is no fluid flow or heat flow.
# Heat energy conservation is checked.
#
# Under these conditions (here L is the height of the sample: L=1 in this case):
# porepressure = porepressure(t=0) - (Fluid bulk modulus)*log(1 - 0.01*t)
# stress_xx = (bulk - 2*shear/3)*disp_z/L (remember this is effective stress)
# stress_zz = (bulk + 4*shear/3)*disp_z/L (remember this is effective stress)
# Also, the total heat energy must be conserved: this is
# fluid_mass * fluid_heat_cap * temperature + (1 - porosity) * rock_density * rock_heat_cap * temperature * volume
# Since fluid_mass is conserved, and volume = (1 - 0.01*t), this can be solved for temperature:
# temperature = initial_heat_energy / (fluid_mass * fluid_heat_cap + (1 - porosity) * rock_density * rock_heat_cap * (1 - 0.01*t))
#
# Parameters:
# Bulk modulus = 2
# Shear modulus = 1.5
# fluid bulk modulus = 0.5
# initial porepressure = 0.1
# initial temperature = 10
#
# Desired output:
# zdisp = -0.01*t
# p0 = 0.1 - 0.5*log(1-0.01*t)
# stress_xx = stress_yy = -0.01*t
# stress_zz = -0.04*t
# t0 =  11.5 / (0.159 + 0.99 * (1 - 0.01*t))
#
# Regarding the "log" - it comes from preserving fluid mass
#
# Note that the PorousFlowMassVolumetricExpansion and PorousFlowHeatVolumetricExpansion Kernels are used
# Note too that the Postprocessors have use_displaced_mesh = true
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pp]
    initial_condition = 0.1
  [../]
  [./temp]
    initial_condition = 10
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./basefixed]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  [../]
  [./top_velocity]
    type = FunctionDirichletBC
    variable = disp_z
    function = -0.01*t
    boundary = front
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = pp
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
  [./temp]
    type = PorousFlowEnergyTimeDerivative
    variable = temp
  [../]
  [./poro_vol_exp_temp]
    type = PorousFlowHeatVolumetricExpansion
    variable = temp
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'temp pp disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 1
      viscosity = 1
      thermal_expansion = 0
      cv = 1.3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./eff_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 2.2
    density = 0.5
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0.5 0 0   0 0.5 0   0 0 0.5'
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'initial timestep_end'
    point = '0 0 0'
    variable = pp
  [../]
  [./t0]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'initial timestep_end'
    point = '0 0 0'
    variable = temp
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 0.5'
    use_displaced_mesh = false
    variable = disp_z
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./fluid_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'initial timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
  [./total_heat]
    type = PorousFlowHeatEnergy
    phase = 0
    execute_on = 'initial timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
  [./rock_heat]
    type = PorousFlowHeatEnergy
    execute_on = 'initial timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
  [./fluid_heat]
    type = PorousFlowHeatEnergy
    include_porous_skeleton = false
    phase = 0
    execute_on = 'initial timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-14 1E-8 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 2
  end_time = 10
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = heat03
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/phase_field_fracture/crack2d_aniso.i

#This input uses PhaseField-Nonconserved Action to add phase field fracture bulk rate kernels
[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 40
    ny = 20
    ymax = 0.5
  []
  [./noncrack]
    type = BoundingBoxNodeSetGenerator
    new_boundary = noncrack
    bottom_left = '0.5 0 0'
    top_right = '1 0 0'
    input = gen
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./All]
        add_variables = true
        strain = SMALL
        additional_generate_output = 'strain_yy stress_yy'
        planar_formulation = PLANE_STRAIN
      [../]
    [../]
  [../]
  [./PhaseField]
    [./Nonconserved]
      [./c]
        free_energy = F
        kappa = kappa_op
        mobility = L
      [../]
    [../]
  [../]
[]

[Kernels]
  [./solid_x]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_x
    component = 0
    c = c
  [../]
  [./solid_y]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_y
    component = 1
    c = c
  [../]
  [./off_disp]
    type = AllenCahnElasticEnergyOffDiag
    variable = c
    displacements = 'disp_x disp_y'
    mob_name = L
  [../]
[]

[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 't'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = noncrack
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0
  [../]
[]

[Materials]
  [./pfbulkmat]
    type = GenericConstantMaterial
    prop_names = 'gc_prop l visco'
    prop_values = '1e-3 0.05 1e-6'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '127.0 70.8 70.8 127.0 70.8 127.0 73.55 73.55 73.55'
    fill_method = symmetric9
    euler_angle_1 = 30
    euler_angle_2 = 0
    euler_angle_3 = 0
  [../]
  [./define_mobility]
    type = ParsedMaterial
    material_property_names = 'gc_prop visco'
    f_name = L
    function = '1.0/(gc_prop * visco)'
  [../]
  [./define_kappa]
    type = ParsedMaterial
    material_property_names = 'gc_prop l'
    f_name = kappa_op
    function = 'gc_prop * l'
  [../]
  [./damage_stress]
    type = ComputeLinearElasticPFFractureStress
    c = c
    E_name = 'elastic_energy'
    D_name = 'degradation'
    F_name = 'local_fracture_energy'
    decomposition_type = stress_spectral
    use_current_history_variable = true
  [../]
  [./degradation]
    type = DerivativeParsedMaterial
    f_name = degradation
    args = 'c'
    function = '(1.0-c)^2*(1.0 - eta) + eta'
    constant_names       = 'eta'
    constant_expressions = '1.0e-6'
    derivative_order = 2
  [../]
  [./local_fracture_energy]
    type = DerivativeParsedMaterial
    f_name = local_fracture_energy
    args = 'c'
    material_property_names = 'gc_prop l'
    function = 'c^2 * gc_prop / 2 / l'
    derivative_order = 2
  [../]
  [./fracture_driving_energy]
    type = DerivativeSumMaterial
    args = c
    sum_materials = 'elastic_energy local_fracture_energy'
    derivative_order = 2
    f_name = F
  [../]
[]

[Postprocessors]
  [./av_stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./av_strain_yy]
    type = SideAverageValue
    variable = disp_y
    boundary = top
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_factor_mat_solving_package'
  petsc_options_value = 'lu superlu_dist'

  nl_rel_tol = 1e-8
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 10

  dt = 5e-5
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/Nucleation/force.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  nz = 0
  xmin = 0
  xmax = 20
  ymin = 0
  ymax = 20
  elem_type = QUAD4
[]

[Variables]
  [./c]
  [../]
[]

[Kernels]
  [./c_force]
    type = DiscreteNucleationForce
    variable = c
    map = map
    no_nucleus_value = -1
    nucleus_value = 2
  [../]
  [./c_react]
    type = Reaction
    variable = c
  [../]
[]

[UserObjects]
  [./inserter]
    type = DiscreteNucleationInserter
    hold_time = 0.4
    probability = 0.01
    seed = 12346
  [../]
  [./map]
    type = DiscreteNucleationMap
    radius = 3.27
    int_width = 2
    periodic = c
    inserter = inserter
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  nl_abs_tol = 1e-10
  num_steps = 10
  dt = 0.2
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/combined/test/tests/power_law_creep/power_law_creep_restart1.i

# 1x1x1 unit cube with uniform pressure on top face

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy creep_strain_xx creep_strain_yy creep_strain_zz elastic_strain_yy'
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./u_top_pull]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    factor = -10.0e6
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'bottom top'
    value = 1000.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e11
    poissons_ratio = 0.3
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    tangent_operator = elastic
    inelastic_models = 'power_law_creep'
  [../]
  [./power_law_creep]
    type = PowerLawCreepStressUpdate
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    temperature = temp
  [../]

  [./thermal]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]
  [./density]
    type = Density
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.0
  num_steps = 6
  dt = 0.1
[]

[Outputs]
  exodus = true
  csv = true
  [./out]
    type = Checkpoint
    num_files = 1
  [../]
[]

test/tests/time_integrators/implicit-euler/ie-monomials.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = MONOMIAL
  [../]
[]

[ICs]
  [./u_ic]
    type = ConstantIC
    variable = u
    value = 1
  [../]
[]

[Functions]
  active = 'forcing_fn exact_fn'

  [./forcing_fn]
    type = ParsedFunction
    value = 2*pow(e,-x-(y*y))*(1-2*y*y)
  [../]

  [./exact_fn]
    type = ParsedGradFunction
    value = pow(e,-x-(y*y))
    grad_x = -pow(e,-x-(y*y))
    grad_y = -2*y*pow(e,-x-(y*y))
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./abs]          # u * v
    type = Reaction
    variable = u
  [../]

  [./forcing]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[DGKernels]
  [./dg_diff]
    type = DGDiffusion
    variable = u
    epsilon = -1
    sigma = 6
  [../]
[]

[BCs]
  [./all]
    type = DGFunctionDiffusionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
    epsilon = -1
    sigma = 6
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
    solve_type = 'NEWTON'
  [../]
[]

[Executioner]
  type = Transient
  nl_rel_tol = 1e-10
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  console = true
[]

examples/ex04_bcs/periodic_bc.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  nz = 0

  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = ExampleGaussContForcing
    variable = u
    x_center = 2
    y_center = 4
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    #Note: Enable either "auto" or both "manual" conditions for this example
    active = 'manual_x manual_y'

    # Can use auto_direction with Generated Meshes
    [./auto]
      variable = u
      auto_direction = 'x y'
    [../]

     # Use Translation vectors for everything else
     [./manual_x]
       variable = u
       primary = 'left'
       secondary = 'right'
       translation = '40 0 0'
     [../]

     [./manual_y]
       variable = u
       primary = 'bottom'
       secondary = 'top'
       translation = '0 40 0'
     [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 20
  nl_rel_tol = 1e-12
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/dynamics/wave_1D/wave_rayleigh_hht_AD.i

# Wave propogation in 1D using HHT time integration in the presence of Rayleigh damping
#
# The test is for an 1D bar element of length 4m  fixed on one end
# with a sinusoidal pulse dirichlet boundary condition applied to the other end.
# alpha, beta and gamma are HHT  time integration parameters
# eta and zeta are mass dependent and stiffness dependent Rayleigh damping
# coefficients, respectively.
# The equation of motion in terms of matrices is:
#
# M*accel + (eta*M+zeta*K)*((1+alpha)*vel-alpha*vel_old)
# +(1+alpha)*K*disp-alpha*K*disp_old = 0
#
# Here M is the mass matrix, K is the stiffness matrix
#
# The displacement at the first, second, third and fourth node at t = 0.1 are
# -7.787499960311491942e-02, 1.955566679096475483e-02 and -4.634888180231294501e-03, respectively.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 4
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 4.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
[]

[Kernels]
  [./DynamicTensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    alpha = -0.3
    zeta = 0.1
    use_automatic_differentiation = true
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.422
    gamma = 0.8
    eta=0.1
    alpha = -0.3
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.422
    gamma = 0.8
    eta=0.1
    alpha = -0.3
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.422
    gamma = 0.8
    eta = 0.1
    alpha = -0.3
  [../]

[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.8
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.422
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.8
    execute_on = timestep_end
  [../]
[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
   type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value=0.0
  [../]
  [./right_z]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value=0.0
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value=0.0
  [../]
  [./left_z]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value=0.0
  [../]
  [./front_x]
    type = DirichletBC
    variable = disp_x
    boundary = front
    value=0.0
  [../]
  [./front_z]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value=0.0
  [../]
  [./back_x]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value=0.0
  [../]
  [./back_z]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./bottom_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = bottom
    function = displacement_bc
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1 0'
  [../]

  [./strain]
    type = ADComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ADComputeLinearElasticStress
    block = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1'
  [../]

[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  start_time = 0
  end_time = 6.0
  l_tol = 1e-12
  nl_rel_tol = 1e-12
  dt = 0.1
[]


[Functions]
  [./displacement_bc]
    type = PiecewiseLinear
    data_file = 'sine_wave.csv'
    format = columns
  [../]

[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp_1]
    type = NodalVariableValue
    nodeid = 1
    variable = disp_y
  [../]
  [./disp_2]
    type = NodalVariableValue
    nodeid = 3
    variable = disp_y
  [../]
  [./disp_3]
    type = NodalVariableValue
    nodeid = 10
    variable = disp_y
  [../]
  [./disp_4]
    type = NodalVariableValue
    nodeid = 14
    variable = disp_y
  [../]
[]

[Outputs]
  file_base = 'wave_rayleigh_hht_out'
  exodus = true
  perf_graph = true
[]

test/tests/geomsearch/2d_moving_penetration/pl_test4.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-10
  l_max_its = 10

  start_time = 0.0
  dt = 0.0125
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test4_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/cosserat06.i

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  active = 'cx_elastic cy_elastic cz_elastic x_couple y_couple z_couple x_moment y_moment z_moment'
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./z_couple]
    type = StressDivergenceTensors
    variable = wc_z
    displacements = 'wc_x wc_y wc_z'
    component = 2
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
  [./z_moment]
    type = MomentBalancing
    variable = wc_z
    component = 2
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeCosseratElasticityTensor
    B_ijkl = '1111 1112 1113 1121 1122 1123 1131 1132 1133   1112 1212 1213 1221 1222 1223 1231 1232 1233    1113 1213 1313 1321 1322 1323 1331 1332 1333     1121 1221 1321 2121 2122 2123 2131 2132 2133     1122 1222 1322 2122 2222 2223 2231 2232 2233     1123 1223 1323 2123 2223 2323 2331 2332 2333     1131 1231 1331 2131 2231 2331 3131 3132 3133     1132 1232 1332 2132 2232 2332 3132 3232 3233     1133 1233 1333 2133 2233 2333 3133 3233 3333'
    fill_method_bending = 'general'
    E_ijkl = '1111 1112 1113 1121 1122 1123 1131 1132 1133   1112 1212 1213 1221 1222 1223 1231 1232 1233    1113 1213 1313 1321 1322 1323 1331 1332 1333     1121 1221 1321 2121 2122 2123 2131 2132 2133     1122 1222 1322 2122 2222 2223 2231 2232 2233     1123 1223 1323 2123 2223 2323 2331 2332 2333     1131 1231 1331 2131 2231 2331 3131 3132 3133     1132 1232 1332 2132 2232 2332 3132 3232 3233     1133 1233 1333 2133 2233 2333 3133 3233 3333'
    fill_method = 'general'
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/controls/time_periods/user_objects/user_object.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
    initial_condition = 0.01
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./nodal]
    type = AverageNodalVariableValue
    variable = u
    execute_on = 'TIMESTEP_END'
  [../]
  [./elemental]
    type = ElementAverageValue
    variable = u
    execute_on = 'TIMESTEP_END'
  [../]
  [./general]
    type = PointValue
    point = '0.5 0.5 0'
    variable = u
    execute_on = 'TIMESTEP_END'
  [../]
  [./internal_side]
    type = NumInternalSides
  [../]
  [./side]
    type = SideAverageValue
    boundary = right
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  csv = true
[]

[Controls]
  [./pp_control]
    type = TimePeriod
    enable_objects = '*/nodal */elemental */general */internal_side */side'
    start_time = 0.5
    end_time = 1
    execute_on = 'INITIAL TIMESTEP_END'
  [../]
[]

test/tests/userobjects/force_preaux/force_preaux.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  nx = 2
  ymin = 0
  ymax = 1
  ny = 2
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1
  [../]
[]

[Kernels]
  [./time]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]
[]


[Postprocessors]
  [./total_u]
    type = ElementIntegralVariablePostprocessor
    variable = u
  [../]

  # scale1 and scale2 depend on the ElementUO total_u. total_u is executed on
  # timestep_end in POST_AUX _before_ the GeneralPostprocessors. scale1 is executed
  # at its default location, timestep_end/POST_AUX/after total_u and hence gets
  # the most up to date information. scale2 is pushed into PRE_AUX and hence picks
  # up the value of total_u from the last timestep.
  [./scale1]
    type = ScalePostprocessor
    value = total_u
    scaling_factor = 1
  [../]

  [./scale2]
    type = ScalePostprocessor
    value = total_u
    scaling_factor = 1
    force_preaux = true
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  csv = true
[]

modules/tensor_mechanics/test/tests/mean_cap_TC/small_deform2.i

# apply uniform stretch in x, y and z directions.
# trial_stress(0, 0) = -2
# trial_stress(1, 1) = 6
# trial_stress(2, 2) = 10
# With tensile_strength = 2, the algorithm should return to trace(stress) = 2, or
# stress(0, 0) = -6
# stress(1, 1) = 2
# stress(2, 2) = 6


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1E-7*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '3E-7*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '5E-7*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
[]

[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningConstant
    value = -1
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
    use_custom_returnMap = true
    use_custom_cto = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mean_cap]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = cap
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/peridynamics/test/tests/auxkernels/boundary_offset_node_area_2D.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./fmg]
    type = FileMeshGenerator
    file = 2D_square.e
  [../]
  [./mgpd]
    type = MeshGeneratorPD
    input = fmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./gap_offset]
  [../]
  [./node_area]
  [../]
[]

[AuxKernels]
  [./gap_offset]
    type = BoundaryOffsetPD
    variable = gap_offset
  [../]
  [./node_area]
    type = NodalVolumePD
    variable = node_area
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./blk1]
    formulation = BOND
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./material_pd]
    type = ComputeSmallStrainVariableHorizonMaterialBPD
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1001
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1001
    value = 0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  end_time = 1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/cp_user_object/test.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./gss]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
  [../]
  [./gss]
    type = MaterialStdVectorAux
    variable = gss
    property = state_var_gss
    index = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = tdisp
  [../]
[]

[UserObjects]
  [./slip_rate_gss]
    type = CrystalPlasticitySlipRateGSS
    variable_size = 12
    slip_sys_file_name = input_slip_sys.txt
    num_slip_sys_flowrate_props = 2
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    uo_state_var_name = state_var_gss
  [../]
  [./slip_resistance_gss]
    type = CrystalPlasticitySlipResistanceGSS
    variable_size = 12
    uo_state_var_name = state_var_gss
  [../]
  [./state_var_gss]
    type = CrystalPlasticityStateVariable
    variable_size = 12
    groups = '0 4 8 12'
    group_values = '60.8 60.8 60.8'
    uo_state_var_evol_rate_comp_name = state_var_evol_rate_comp_gss
    scale_factor = 1.0
  [../]
  [./state_var_evol_rate_comp_gss]
    type = CrystalPlasticityStateVarRateComponentGSS
    variable_size = 12
    hprops = '1.0 541.5 109.8 2.5'
    uo_slip_rate_name = slip_rate_gss
    uo_state_var_name = state_var_gss
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainUObasedCP
    stol = 1e-2
    tan_mod_type = exact
    uo_slip_rates = 'slip_rate_gss'
    uo_slip_resistances = 'slip_resistance_gss'
    uo_state_vars = 'state_var_gss'
    uo_state_var_evol_rate_comps = 'state_var_evol_rate_comp_gss'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'ux uy uz'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
  [../]
  [./gss]
    type = ElementAverageValue
    variable = gss
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomerang
  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  dtmax = 10.0
  nl_rel_tol = 1e-10
  end_time = 1
  dtmin = 0.05
  num_steps = 10
  nl_abs_step_tol = 1e-10
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/chem15.i

# Check derivatives of mass-fraction, but using Equilibrium chemistry
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.1
  [../]
  [./b]
    initial_condition = 0.2
  [../]
  [./h2o_dummy]
  [../]
[]

[AuxVariables]
  [./eqm_k0]
    initial_condition = 1.234E-4
  [../]
  [./eqm_k1]
    initial_condition = 0.987E-4
  [../]
  [./eqm_k2]
    initial_condition = 0.5E-4
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
  [./ini_sec_conc0]
    initial_condition = 0.111
  [../]
  [./ini_sec_conc1]
    initial_condition = 0.222
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowMassTimeDerivative
    variable = a
    fluid_component = 0
  [../]
  [./b]
    type = PorousFlowMassTimeDerivative
    variable = b
    fluid_component = 1
  [../]
  [./h2o_dummy]
    # note that in real simulations this Kernel would not be used
    # It is just here to check derivatives
    type = PorousFlowMassTimeDerivative
    variable = h2o_dummy
    fluid_component = 2
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_equilibrium = 3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFractionAqueousEquilibriumChemistry
    mass_fraction_vars = 'a b'
    num_reactions = 3
    equilibrium_constants = 'eqm_k0 eqm_k1 eqm_k2'
    primary_activity_coefficients = '1 1.2'
    secondary_activity_coefficients = '1 2 3'
    reactions = '1 2
                 2.2 -1
                 -2 1'
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

test/tests/kernels/conservative_advection/full_upwinding_2D.i

# 2D test of advection with full upwinding
# Note there are no overshoots or undershoots
# but there is numerical diffusion.
# The center of the blob advects with the correct velocity
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u_blob]
    type = FunctionIC
    variable = u
    function = 'if(x<0.2,if(y<0.2,1,0),0)'
  [../]
[]

[Kernels]
  [./udot]
    type = MassLumpedTimeDerivative
    variable = u
  [../]
  [./advection]
    type = ConservativeAdvection
    variable = u
    upwinding_type = full
    velocity = '2 1 0'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = LINEAR
  dt = 0.01
  end_time = 0.1
  l_tol = 1E-14
[]

[Outputs]
  exodus = true
[]

test/tests/userobjects/setup_interface_count/internal_side.i

[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 2
    ny = 2
  []
  [./right_side]
    input = gen
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0 0 0'
    top_right = '1 0.5 0'
    block_id = 1
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Postprocessors]
  [./initial] # 1 per simulation
    type = InternalSideSetupInterfaceCount
    count_type = 'initial'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./timestep] # once per timestep
    type = InternalSideSetupInterfaceCount
    count_type = 'timestep'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./subdomain] # 1 on initial and 2 for each timestep
    type = InternalSideSetupInterfaceCount
    count_type = 'subdomain'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./initialize] # 1 for initial and 2 for each timestep
    type = InternalSideSetupInterfaceCount
    count_type = 'initialize'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./finalize] # 1 for initial and 2 for each timestep
    type = InternalSideSetupInterfaceCount
    count_type = 'finalize'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./execute] # 4 for initial and 8 for each timestep
    type = InternalSideSetupInterfaceCount
    count_type = 'execute'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
  [./threadjoin] # 1 for initial and 2 for each timestep
    type = InternalSideSetupInterfaceCount
    count_type = 'threadjoin'
    execute_on = 'initial timestep_begin timestep_end'
  [../]
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/chemistry/dissolution_limited.i

# The dissolution reaction, with limited initial mineral concentration
#
# a <==> mineral
#
# produces "mineral".  Using mineral_density = fluid_density, theta = 1 = eta, the DE is
#
# a' = -(mineral / porosity)' = rate * surf_area * molar_vol (1 - (1 / eqm_const) * (act_coeff * a)^stoi)
#
# The following parameters are used
#
# T_ref = 0.5 K
# T = 1 K
# activation_energy = 3 J/mol
# gas_constant = 6 J/(mol K)
# kinetic_rate_at_ref_T = 0.60653 mol/(m^2 s)
# These give rate = 0.60653 * exp(1/2) = 1 mol/(m^2 s)
#
# surf_area = 0.5 m^2/L
# molar_volume = 2 L/mol
# These give rate * surf_area * molar_vol = 1 s^-1
#
# equilibrium_constant = 0.5 (dimensionless)
# primary_activity_coefficient = 2 (dimensionless)
# stoichiometry = 1 (dimensionless)
# This means that 1 - (1 / eqm_const) * (act_coeff * a)^stoi = 1 - 4 a, which is positive for a < 0.25, ie dissolution for a(t=0) < 0.25
#
# The solution of the DE is
# a = eqm_const / act_coeff + (a(t=0) - eqm_const / act_coeff) exp(-rate * surf_area * molar_vol * act_coeff * t / eqm_const)
#   = 0.25 + (a(t=0) - 0.25) exp(-4 * t)
# c = c(t=0) - (a - a(t=0)) * porosity
#
# However, c(t=0) is small, so that the reaction only works until c=0, then a and c both remain fixed
#
# This test checks that (a + c / porosity) is time-independent, and that a follows the above solution, until c=0 and thereafter remains fixed.
#
# Aside:
#    The exponential curve is not followed exactly because moose actually solves
#    (a - a_old)/dt = rate * surf_area * molar_vol (1 - (1 / eqm_const) * (act_coeff * a)^stoi)
#    which does not give an exponential exactly, except in the limit dt->0
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.05
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 0.5
  [../]
  [./pressure]
  [../]
  [./ini_mineral_conc]
    initial_condition = 0.015
  [../]
  [./mineral]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./should_be_static]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./mineral]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = mineral
  [../]
  [./should_be_static]
    type = ParsedAux
    args = 'mineral a'
    function = 'a + mineral / 0.1'
    variable = should_be_static
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./mass_a]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = a
  [../]
  [./pre_dis]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1000
    stoichiometry = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = a
    number_fluid_phases = 1
    number_fluid_components = 2
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9 # huge, so mimic chemical_reactions
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 1
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./mass_frac]
    type = PorousFlowMassFraction
    mass_fraction_vars = a
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = a
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = 2
    reactions = 1
    specific_reactive_surface_area = 0.5
    kinetic_rate_constant = 0.6065306597126334
    activation_energy = 3
    molar_volume = 2
    gas_constant = 6
    reference_temperature = 0.5
  [../]
  [./mineral_conc]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_mineral_conc
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1E-10
  dt = 0.01
  end_time = 1
[]

[Postprocessors]
  [./a]
    type = PointValue
    point = '0 0 0'
    variable = a
  [../]
  [./should_be_static]
    type = PointValue
    point = '0 0 0'
    variable = should_be_static
  [../]
[]
[Outputs]
  interval = 10
  csv = true
  perf_graph = true
[]

modules/richards/test/tests/pressure_pulse/pp02.i

# investigating pressure pulse in 1D with 1 phase
# transient

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.0
    sum_s_res = 0.0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E3
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    initial_condition = 2E6
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 3E6
    variable = pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = SeffVG
    pressure_vars = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-15 0 0  0 1E-15 0  0 0 1E-15'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E3
  end_time = 1E4
[]

[Outputs]
  file_base = pp02
  execute_on = 'initial timestep_end final'
  interval = 10000
  exodus = true
[]

modules/tensor_mechanics/examples/coal_mining/cosserat_mc_wp_sticky.i

# Strata deformation and fracturing around a coal mine
#
# A 2D geometry is used that simulates a transverse section of
# the coal mine.  The model is actually 3D, but the "x"
# dimension is only 10m long, meshed with 1 element, and
# there is no "x" displacement.  The mine is 400m deep
# and just the roof is studied (0<=z<=400).  The model sits
# between 0<=y<=450.  The excavation sits in 0<=y<=150.  This
# is a "half model": the boundary conditions are such that
# the model simulates an excavation sitting in -150<=y<=150
# inside a model of the region -450<=y<=450.  The
# excavation height is 3m (ie, the excavation lies within
# 0<=z<=3).
#
# Time is meaningless in this example
# as quasi-static solutions are sought at each timestep, but
# the number of timesteps controls the resolution of the
# process.
#
# The boundary conditions for this elastic simulation are:
#  - disp_x = 0 everywhere
#  - disp_y = 0 at y=0 and y=450
#  - disp_z = 0 at z=0, but there is a time-dependent
#               Young's modulus that simulates excavation
#  - wc_x = 0 at y=0 and y=450.
# That is, rollers on the sides, free at top,
# and prescribed at bottom in the unexcavated portion.
#
# The small strain formulation is used.
#
# All stresses are measured in MPa.  The initial stress is consistent with
# the weight force from density 2500 kg/m^3, ie, stress_zz = -0.025*(300-z) MPa
# where gravity = 10 m.s^-2 = 1E-5 MPa m^2/kg.  The maximum and minimum
# principal horizontal stresses are assumed to be equal to 0.8*stress_zz.
#
# Material properties:
# Young's modulus = 8 GPa
# Poisson's ratio = 0.25
# Cosserat layer thickness = 1 m
# Cosserat-joint normal stiffness = large
# Cosserat-joint shear stiffness = 1 GPa
# MC cohesion = 3 MPa
# MC friction angle = 37 deg
# MC dilation angle = 8 deg
# MC tensile strength = 1 MPa
# MC compressive strength = 100 MPa, varying down to 1 MPa when tensile strain = 1
# WeakPlane cohesion = 0.1 MPa
# WeakPlane friction angle = 30 deg
# WeakPlane dilation angle = 10 deg
# WeakPlane tensile strength = 0.1 MPa
# WeakPlane compressive strength = 100 MPa softening to 1 MPa at strain = 1
#
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 1
    xmin = -5
    xmax = 5
    nz = 40
    zmin = 0
    zmax = 403.003
    bias_z = 1.1
    ny = 30 # make this a multiple of 3, so y=150 is at a node
    ymin = 0
    ymax = 450
  []
  [left]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 11
    normal = '0 -1 0'
    input = generated_mesh
  []
  [right]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 12
    normal = '0 1 0'
    input = left
  []
  [front]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 13
    normal = '-1 0 0'
    input = right
  []
  [back]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 14
    normal = '1 0 0'
    input = front
  []
  [top]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 15
    normal = '0 0 1'
    input = back
  []
  [bottom]
    type = SideSetsAroundSubdomainGenerator
    block = 0
    new_boundary = 16
    normal = '0 0 -1'
    input = top
  []
  [excav]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '-5 0 0'
    top_right = '5 150 3'
    input = bottom
  []
  [roof]
    type = SideSetsAroundSubdomainGenerator
    block = 1
    new_boundary = 18
    normal = '0 0 1'
    input = excav
  []
[]

[GlobalParams]
  perform_finite_strain_rotations = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
[]

[Kernels]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    use_displaced_mesh = false
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    use_displaced_mesh = false
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    use_displaced_mesh = false
    variable = wc_x
    component = 0
  [../]
  [./gravity]
    type = Gravity
    use_displaced_mesh = false
    variable = disp_z
    value = -10E-6 # remember this is in MPa
  [../]
[]


[AuxVariables]
  [./disp_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wp_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_shear_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_tensile_f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_shear]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_internal_parameter
    variable = mc_shear
  [../]
  [./mc_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = mc_plastic_internal_parameter
    variable = mc_tensile
  [../]
  [./wp_shear]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_internal_parameter
    variable = wp_shear
  [../]
  [./wp_tensile]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_internal_parameter
    variable = wp_tensile
  [../]
  [./mc_shear_f]
    type = MaterialStdVectorAux
    index = 6
    property = mc_plastic_yield_function
    variable = mc_shear_f
  [../]
  [./mc_tensile_f]
    type = MaterialStdVectorAux
    index = 0
    property = mc_plastic_yield_function
    variable = mc_tensile_f
  [../]
  [./wp_shear_f]
    type = MaterialStdVectorAux
    index = 0
    property = wp_plastic_yield_function
    variable = wp_shear_f
  [../]
  [./wp_tensile_f]
    type = MaterialStdVectorAux
    index = 1
    property = wp_plastic_yield_function
    variable = wp_tensile_f
  [../]
[]



[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '11 12'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '16'
    value = 0.0
  [../]
  [./no_wc_x]
    type = DirichletBC
    variable = wc_x
    boundary = '11 12'
    value = 0.0
  [../]
  [./roof]
    type = StickyBC
    variable = disp_z
    min_value = -3.0
    boundary = '18'
  [../]
[]

[Functions]
  [./ini_xx]
    type = ParsedFunction
    value = '-0.8*2500*10E-6*(403.003-z)'
  [../]
  [./ini_zz]
    type = ParsedFunction
    value = '-2500*10E-6*(403.003-z)'
  [../]
  [./excav_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval slope'
    vals = '1.0   0    150.0 1E-9 1 15'
    # excavation face at ymin+(ymax-ymin)*min(t/end_t,1)
    # slope is the distance over which the modulus reduces from maxval to minval
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,if(y<ymin+(ymax-ymin)*min(t/end_t,1)+slope,minval+(maxval-minval)*(y-(ymin+(ymax-ymin)*min(t/end_t,1)))/slope,maxval))'
  [../]
  [./density_sideways]
    type = ParsedFunction
    vars = 'end_t ymin ymax  minval maxval'
    vals = '1.0   0    150.0 0 2500'
    value = 'if(y<ymin+(ymax-ymin)*min(t/end_t,1),minval,maxval)'
  [../]
[]

[UserObjects]
  [./mc_coh_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 2.99 # MPa
    value_residual = 3.01 # MPa
    rate = 1.0
  [../]
  [./mc_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.65 # 37deg
  [../]
  [./mc_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.15 # 8deg
  [../]

  [./mc_tensile_str_strong_harden]
    type = TensorMechanicsHardeningExponential
    value_0 = 1.0 # MPa
    value_residual = 1.0 # MPa
    rate = 1.0
  [../]
  [./mc_compressive_str]
    type = TensorMechanicsHardeningCubic
    value_0 = 100 # Large!
    value_residual = 100
    internal_limit = 0.1
  [../]

  [./wp_coh_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_tan_fric]
    type = TensorMechanicsHardeningConstant
    value = 0.36 # 20deg
  [../]
  [./wp_tan_dil]
    type = TensorMechanicsHardeningConstant
    value = 0.18 # 10deg
  [../]

  [./wp_tensile_str_harden]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.1
    value_residual = 0.1
    internal_limit = 10
  [../]
  [./wp_compressive_str_soften]
    type = TensorMechanicsHardeningCubic
    value_0 = 100
    value_residual = 1
    internal_limit = 1.0
  [../]
[]

[Materials]
  [./elasticity_tensor_0]
    type = ComputeLayeredCosseratElasticityTensor
    block = 0
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
  [../]
  [./elasticity_tensor_1]
    type = ComputeLayeredCosseratElasticityTensor
    block = 1
    young = 8E3 # MPa
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 1E9 # huge
    joint_shear_stiffness = 1E3 # MPa
    elasticity_tensor_prefactor = excav_sideways
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    eigenstrain_name = ini_stress
    initial_stress = 'ini_xx 0 0  0 ini_xx 0  0 0 ini_zz'
  [../]

  [./stress_0]
    # this is needed so as to correctly apply the initial stress
    type = ComputeMultipleInelasticCosseratStress
    block = 0
    inelastic_models = 'mc wp'
    cycle_models = true
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./stress_1]
    type = ComputeMultipleInelasticCosseratStress
    block = 1
    inelastic_models = ''
    relative_tolerance = 2.0
    absolute_tolerance = 1E6
    max_iterations = 1
    tangent_operator = nonlinear
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedMohrCoulombCosseratStressUpdate
    warn_about_precision_loss = false
    host_youngs_modulus = 8E3
    host_poissons_ratio = 0.25
    base_name = mc
    tensile_strength = mc_tensile_str_strong_harden
    compressive_strength = mc_compressive_str
    cohesion = mc_coh_strong_harden
    friction_angle = mc_fric
    dilation_angle = mc_dil
    max_NR_iterations = 100000
    smoothing_tol = 0.1 # MPa  # Must be linked to cohesion
    yield_function_tol = 1E-9 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0
  [../]
  [./wp]
    type = CappedWeakPlaneCosseratStressUpdate
    warn_about_precision_loss = false
    base_name = wp
    cohesion = wp_coh_harden
    tan_friction_angle = wp_tan_fric
    tan_dilation_angle = wp_tan_dil
    tensile_strength = wp_tensile_str_harden
    compressive_strength = wp_compressive_str_soften
    max_NR_iterations = 10000
    tip_smoother = 0.1
    smoothing_tol = 0.1 # MPa  # Note, this must be tied to cohesion, otherwise get no possible return at cone apex
    yield_function_tol = 1E-11 # MPa.  this is essentially the lowest possible without lots of precision loss
    perfect_guess = true
    min_step_size = 1.0E-3
  [../]


  [./density_0]
    type = GenericConstantMaterial
    block = 0
    prop_names = density
    prop_values = 2500
  [../]
  [./density_1]
    type = GenericFunctionMaterial
    block = 1
    prop_names = density
    prop_values = density_sideways
  [../]
[]

[Postprocessors]
  [./subs_max]
    type = PointValue
    point = '0 0 403.003'
    variable = disp_z
    use_displaced_mesh = false
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient

  solve_type = 'NEWTON'

  petsc_options = '-snes_converged_reason'
  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'

  line_search = bt

  nl_abs_tol = 1e-8
  nl_rel_tol = 1e-8

  l_max_its = 30
  nl_max_its = 1000

  start_time = 0.0
  dt = 0.01
  end_time = 1.0

[]

[Outputs]
  file_base = cosserat_mc_wp_sticky
  interval = 1
  print_linear_residuals = false
  exodus = true
  csv = true
  console = true
[]

modules/porous_flow/test/tests/flux_limited_TVD_advection/fltvd_1D.i

# Using Flux-Limited TVD Advection ala Kuzmin and Turek, with antidiffusion from superbee flux limiting
# 1D version
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 1
[]

[Variables]
  [./tracer]
  [../]
[]

[ICs]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[Kernels]
  [./mass_dot]
    type = MassLumpedTimeDerivative
    variable = tracer
  [../]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = tracer
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    flux_limiter_type = superbee
    u = tracer
    velocity = '0.1 0 0'
  [../]
[]

[BCs]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_tracer]
# Ideally, an OutflowBC would be used, but that does not exist in the framework
# In 1D VacuumBC is the same as OutflowBC, with the alpha parameter being twice the velocity
    type = VacuumBC
    boundary = right
    alpha = 0.2 # 2 * velocity
    variable = tracer
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 11
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  nl_abs_tol = 1E-8
  nl_max_its = 500
  timestep_tolerance = 1E-3
[]

[Outputs]
  print_linear_residuals = false
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/functions/default_function/default_function.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = FuncCoefDiffusion
    variable = u
    # No default function supplied
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = NeumannBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/dynamics/rayleigh_damping/rayleigh_newmark_material_dependent.i

# Test for rayleigh damping implemented using Newmark time integration

# The test is for an 1D bar element of  unit length fixed on one end
# with a ramped pressure boundary condition applied to the other end.
# zeta and eta correspond to the stiffness and mass proportional rayleigh damping
# beta and gamma are Newmark time integration parameters
# The equation of motion in terms of matrices is:
#
# M*accel + eta*M*vel + zeta*K*vel + K*disp = P*Area
#
# Here M is the mass matrix, K is the stiffness matrix, P is the applied pressure
#
# This equation is equivalent to:
#
# density*accel + eta*density*vel + zeta*d/dt(Div stress) + Div stress = P
#
# The first two terms on the left are evaluated using the Inertial force kernel
# The next two terms on the left involving zeta are evaluated using the
# DynamicStressDivergenceTensors Kernel
# The residual due to Pressure is evaluated using Pressure boundary condition
#
# The system will come to steady state slowly after the pressure becomes constant.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0.0
  xmax = 0.1
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./accel_x]
  [../]
  [./vel_y]
  [../]
  [./accel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_z]
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

[]

[Kernels]
  [./DynamicTensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    zeta = 'zeta_rayleigh'
  [../]
  [./inertia_x]
    type = InertialForce
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    beta = 0.25
    gamma = 0.5
    eta = 'eta_rayleigh'
  [../]
  [./inertia_y]
    type = InertialForce
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    beta = 0.25
    gamma = 0.5
    eta = 'eta_rayleigh'
  [../]
  [./inertia_z]
    type = InertialForce
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    beta = 0.25
    gamma = 0.5
    eta = 'eta_rayleigh'
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 0
    index_j = 1
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 0
    index_j = 1
  [../]

[]


[BCs]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value=0.0
  [../]
  [./top_x]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value=0.0
  [../]
  [./top_z]
    type = DirichletBC
    variable = disp_z
    boundary = top
    value=0.0
  [../]
  [./bottom_x]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value=0.0
  [../]
  [./bottom_z]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value=0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = bottom
      function = pressure
      disp_x = disp_x
      disp_y = disp_y
      disp_z = disp_z
      factor = 1
    [../]
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '210e9 0'
  [../]

  [./strain]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]

  [./stress]
    type = ComputeLinearElasticStress
    block = 0
  [../]

  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '7750'
  [../]
  [./material_zeta]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'zeta_rayleigh'
    prop_values = '0.1'
  [../]
  [./material_eta]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'eta_rayleigh'
    prop_values = '0.1'
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 2
  dt = 0.1
[]


[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 1.0 2.0 5.0'
    y = '0.0 0.1 0.2 1.0 1.0 1.0'
    scale_factor = 1e9
  [../]
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./disp]
    type = NodalMaxValue
    variable = disp_y
    boundary = bottom
  [../]
  [./vel]
    type = NodalMaxValue
    variable = vel_y
    boundary = bottom
  [../]
  [./accel]
    type = NodalMaxValue
    variable = accel_y
    boundary = bottom
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]

[]

[Outputs]
  file_base = 'rayleigh_newmark_out'
  exodus = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/crystal_plasticity/crysp_linesearch.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
  displacements = 'ux uy uz'
[]

[Variables]
  [./ux]
    block = 0
  [../]
  [./uy]
    block = 0
  [../]
  [./uz]
    block = 0
  [../]
[]

[AuxVariables]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./fp_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./e_zz]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
  [./gss1]
    order = CONSTANT
    family = MONOMIAL
    block = 0
  [../]
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = 0.01*t
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'ux uy uz'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_zz]
    type = RankTwoAux
    variable = stress_zz
    rank_two_tensor = stress
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./fp_zz]
    type = RankTwoAux
    variable = fp_zz
    rank_two_tensor = fp
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./e_zz]
    type = RankTwoAux
    variable = e_zz
    rank_two_tensor = lage
    index_j = 2
    index_i = 2
    execute_on = timestep_end
    block = 0
  [../]
  [./gss1]
    type = MaterialStdVectorAux
    variable = gss1
    property = gss
    index = 0
    execute_on = timestep_end
    block = 0
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = uy
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = ux
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = uz
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = uz
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./crysp]
    type = FiniteStrainCrystalPlasticity
    block = 0
    rtol = 1e-6
    abs_tol = 1e-8
    gtol = 1e-2
    slip_sys_file_name = input_slip_sys.txt
    nss = 12
    num_slip_sys_flowrate_props = 2 #Number of properties in a slip system
    flowprops = '1 4 0.001 0.1 5 8 0.001 0.1 9 12 0.001 0.1'
    hprops = '1.0 541.5 60.8 109.8 2.5'
    gprops = '1 4 60.8 5 8 60.8 9 12 60.8'
    tan_mod_type = exact
    use_line_search = true
    min_line_search_step_size = 0.01
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensorCP
    block = 0
    C_ijkl = '1.684e5 1.214e5 1.214e5 1.684e5 1.214e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'ux uy uz'
  [../]
[]

[Postprocessors]
  [./stress_zz]
    type = ElementAverageValue
    variable = stress_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./fp_zz]
    type = ElementAverageValue
    variable = fp_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./e_zz]
    type = ElementAverageValue
    variable = e_zz
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./gss1]
    type = ElementAverageValue
    variable = gss1
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  dt = 0.025
  dtmax = 10.0
  dtmin = 0.02

  num_steps = 10
[]

[Outputs]
  file_base = crysp_lsearch_out
  exodus = true
[]

test/tests/multiapps/restart_multilevel/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 10
[]

[Functions]
  [./u_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./fn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = u_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    app_type = MooseTestApp
    type = TransientMultiApp
    input_files = 'subsub.i'
    execute_on = timestep_end
    positions = '0 -1 0'
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub_app
    source_variable = u
    variable = v
  [../]
[]

modules/functional_expansion_tools/test/tests/errors/multiapp_bad_function_series.i

[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = Diffusion
    variable = m
  [../]
  [./time_diff_m]
    type = TimeDerivative
    variable = m
  [../]
  [./s_in]
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'left right'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
  [../]
  [./AnotherFunction]
    type = ConstantFunction
    value = -1
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = multiapp_sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = AnotherFunction
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

modules/combined/test/tests/frictional_contact/sliding_elastic_blocks_2d/sliding_elastic_blocks_2d_tp.i

[Mesh]
  file = sliding_elastic_blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./accum_slip]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    save_in = 'saved_x saved_y'
    diag_save_in = 'diag_saved_x diag_saved_y'
  [../]
[]


[AuxKernels]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    quantity = incremental_slip_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    quantity = incremental_slip_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip]
    type = PenetrationAux
    variable = accum_slip
    execute_on = timestep_end
    quantity = accumulated_slip
    boundary = 3
    paired_boundary = 2
  [../]
  [./tangential_force_x]
    type = PenetrationAux
    variable = tang_force_x
    execute_on = timestep_end
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 2
  [../]
  [./tangential_force_y]
    type = PenetrationAux
    variable = tang_force_y
    execute_on = timestep_end
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 2
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 4
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 4
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.005
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1.0e7
    poissons_ratio = 0.3
  [../]
  [./right]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1.0e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.05
  num_steps = 1000
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-09
  dtmin = 0.01
  l_tol = 1e-3

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = coulomb
    system = constraint
    formulation = tangential_penalty
    friction_coefficient = '0.25'
    penalty = 1e6
  [../]
[]

[Dampers]
  [./contact_slip]
    type = ContactSlipDamper
    slave = 3
    master = 2
  [../]
[]

modules/tensor_mechanics/test/tests/ad_1D_spherical/smallStrain_1DSphere.i

# This simulation models the mechanics solution for a solid sphere under
# pressure, applied on the outer surfaces, using 1D spherical symmetry
# assumpitions.  The inner center of the sphere, r = 0, is pinned to prevent
# movement of the sphere.
#
# From Bower (Applied Mechanics of Solids, 2008, available online at
# solidmechanics.org/text/Chapter4_1/Chapter4_1.htm), and applying the outer
# pressure and pinned displacement boundary conditions set in this simulation,
# the radial displacement is given by:
#
# u(r) = \frac{- P * (1 - 2 * v) * r}{E}
#
# where P is the applied pressure, v is Poisson's ration, E is Young's Modulus,
# and r is the radial position.
#
# The test assumes a radius of 4, zero displacement at r = 0mm, and an applied
# outer pressure of 1MPa.  Under these conditions in a solid sphere, the radial
# stress is constant and has a value of -1 MPa.
[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 4
  nx = 4
[]

[GlobalParams]
  displacements = 'disp_r'
[]

[Problem]
  coord_type = RSPHERICAL
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    save_in = residual_r
    use_automatic_differentiation = true
  [../]
[]

[AuxVariables]
  [./stress_rr]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./residual_r]
  [../]
[]

[Postprocessors]
  [./stress_rr]
    type = ElementAverageValue
    variable = stress_rr
  [../]
  [./residual_r]
    type = NodalSum
    variable = residual_r
    boundary = right
  [../]
[]

[AuxKernels]
  [./stress_rr]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_rr
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./innerDisp]
    type = ADDirichletBC
    boundary = left
    variable = disp_r
    value = 0.0
  [../]
  [./outerPressure]
    type = ADPressure
    boundary = right
    variable = disp_r
    component = 0
    constant = 1
  [../]
[]

[Materials]
  [./Elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.345
    youngs_modulus = 1e4
  [../]
  [./stress]
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-8

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-5

# time control
  start_time = 0.0
  dt = 0.25
  dtmin = 0.0001
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/gravity_head_1/gh15.i

# unsaturated = false
# gravity = true
# supg = true
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  xmin = -1
  xmax = 1
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    value = 1
    variable = pressure
  [../]
[]


[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E3
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 0.1
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGstandard
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '-1 0 0'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E10
  end_time = 1E10
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = gh15
  exodus = true
[]

modules/phase_field/examples/grain_growth/grain_growth_2D_voronoi_newadapt.i

# This simulation predicts GB migration of a 2D copper polycrystal with 15 grains
# Mesh adaptivity (new system) and time step adaptivity are used
# An AuxVariable is used to calculate the grain boundary locations
# Postprocessors are used to record time step and the number of grains
# We are not using the GrainTracker in this example so the number
# of order paramaters must match the number of grains.

[Mesh]
  # Mesh block.  Meshes can be read in or automatically generated
  type = GeneratedMesh
  dim = 2 # Problem dimension
  nx = 12 # Number of elements in the x-direction
  ny = 12 # Number of elements in the y-direction
  nz = 0 # Number of elements in the z-direction
  xmin = 0    # minimum x-coordinate of the mesh
  xmax = 1000 # maximum x-coordinate of the mesh
  ymin = 0    # minimum y-coordinate of the mesh
  ymax = 1000 # maximum y-coordinate of the mesh
  zmin = 0
  zmax = 0
  elem_type = QUAD4 # Type of elements used in the mesh
  uniform_refine = 3 # Initial uniform refinement of the mesh

  parallel_type = replicated # Periodic BCs
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = 15 # Number of grains
  var_name_base = gr # Base name of grains
[]

[UserObjects]
  [./voronoi]
    type = PolycrystalVoronoi
    grain_num = 15
    rand_seed = 42
    coloring_algorithm = bt # We must use bt to force the UserObject to assign one grain to each op
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalColoringIC]
      polycrystal_ic_uo = voronoi
    [../]
  [../]
[]

[Variables]
  # Variable block, where all variables in the simulation are declared
  [./PolycrystalVariables]
    # Custom action that created all of the grain variables and sets their initial condition
  [../]
[]

[AuxVariables]
  # Dependent variables
  [./bnds]
    # Variable used to visualize the grain boundaries in the simulation
  [../]
[]

[Kernels]
  # Kernel block, where the kernels defining the residual equations are set up.
  [./PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  [../]
[]

[AuxKernels]
  # AuxKernel block, defining the equations used to calculate the auxvars
  [./bnds_aux]
    # AuxKernel that calculates the GB term
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[BCs]
  # Boundary Condition block
  [./Periodic]
    [./top_bottom]
      auto_direction = 'x y' # Makes problem periodic in the x and y directions
    [../]
  [../]
[]

[Materials]
  [./CuGrGr]
    # Material properties
    type = GBEvolution # Quantitative material properties for copper grain growth.  Dimensions are nm and ns
    GBmob0 = 2.5e-6 # Mobility prefactor for Cu from Schonfelder1997
    GBenergy = 0.708 # GB energy for Cu from Schonfelder1997
    Q = 0.23 # Activation energy for grain growth from Schonfelder 1997
    T = 450 # Constant temperature of the simulation (for mobility calculation)
    wGB = 14 # Width of the diffuse GB
  [../]
[]

[Postprocessors]
  # Scalar postprocessors
  [./dt]
    # Outputs the current time step
    type = TimestepSize
  [../]
[]

[Executioner]
  type = Transient # Type of executioner, here it is transient with an adaptive time step
  scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre    boomeramg      101                ds'

  l_max_its = 30 # Max number of linear iterations
  l_tol = 1e-4 # Relative tolerance for linear solves
  nl_max_its = 40 # Max number of nonlinear iterations
  nl_abs_tol = 1e-11 # Relative tolerance for nonlienar solves
  nl_rel_tol = 1e-10 # Absolute tolerance for nonlienar solves

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 25 # Initial time step.  In this simulation it changes.
  [../]

  start_time = 0.0
  end_time = 4000
  num_steps = 3
[]

[Adaptivity]
  marker = errorfrac
  max_h_level = 4
  [./Indicators]
    [./error]
      type = GradientJumpIndicator
      variable = bnds
    [../]
  [../]
  [./Markers]
    [./bound_adapt]
      type = ValueThresholdMarker
      third_state = DO_NOTHING
      coarsen = 1.0
      refine = 0.99
      variable = bnds
      invert = true
    [../]
    [./errorfrac]
      type = ErrorFractionMarker
      coarsen = 0.1
      indicator = error
      refine = 0.7
    [../]
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  [./console]
    type = Console
    max_rows = 20
  [../]
[]

test/tests/postprocessors/pps_interval/pps_out_interval.i

[Mesh]
  file = square-2x2-nodeids.e
  # This test can only be run with renumering disabled, so the
  # NodalVariableValue postprocessor's node id is well-defined.
  allow_renumbering = false
[]

[Variables]
  active = 'u v'

  [./u]
    order = SECOND
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Functions]
  active = 'force_fn exact_fn left_bc'

  [./force_fn]
    type = ParsedFunction
    value = '1-x*x+2*t'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = '(1-x*x)*t'
  [../]

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = '
    time_u diff_u ffn_u
    time_v diff_v'

  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'all_u left_v right_v'

  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = exact_fn
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '2'
    value = 0
  [../]
[]

[Postprocessors]
  active = 'l2 node1 node4'

  [./l2]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./node1]
    type = NodalVariableValue
    variable = u
    nodeid = 15
  [../]

  [./node4]
    type = NodalVariableValue
    variable = v
    nodeid = 10
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 1
[]

[Outputs]
  file_base = pps_out_interval
  interval = 2
  exodus = true
  [./console]
    type = Console
    interval = 1
  [../]
[]

test/tests/kernels/conservative_advection/none_in_none_out.i

# Using ConservativeAdvection with full upwinding
# This demonstrates BCs (no BCs) that allow no mass to
# enter or exit the domain.
# Total mass remains constant and the pulse advects
# with the correct velocity
[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 10
  nx = 10
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u]
    type = FunctionIC
    variable = u
    function = 'if(x<5,x,10-x)'
  [../]
[]

[Kernels]
  [./dot]
    type = MassLumpedTimeDerivative
    variable = u
  [../]
  [./advection]
    type = ConservativeAdvection
    variable = u
    upwinding_type = full
    velocity = '1 0 0'
  [../]
[]

[Postprocessors]
  [./total_mass]
    type = VariableInnerProduct
    variable = u
    second_variable = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Linear
  dt = 1
  end_time = 10
  l_tol = 1E-14
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/chemistry/except12.i

# Exception test.
# Incorrect number of theta exponents

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    reactions = '1 1'
    specific_reactive_surface_area = 1.0
    kinetic_rate_constant = 1.0e-8
    activation_energy = 1.5e4
    molar_volume = 1
    theta_exponent = '1 1'
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/tests/kernels/darcy_advection/darcy_advection.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 200
  ny = 10
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
[]

[Variables]
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[AuxVariables]
  [pressure]
    initial_condition = 10000
  []
[]

[Kernels]
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
  [heat_convection]
    type = DarcyAdvection
    variable = temperature
    pressure = pressure
  []
[]

[BCs]
  [inlet_temperature]
    type = DirichletBC
    variable = temperature
    boundary = left
    value = 350
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = right
  []
[]

[Materials]
  [column]
    type = PackedColumn
    radius = 1
    temperature = temperature
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/check_error/check_error.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./multi]
    type = TransientMultiApp
    app_type = MooseTestApp
  [../]
[]

[Outputs]
  exodus = true
[]

modules/peridynamics/test/tests/auxkernels/boundary_offset_node_volume_3D.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./fmg]
    type = FileMeshGenerator
    file = 3D_cube.e
  [../]
  [./mgpd]
    type = MeshGeneratorPD
    input = fmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./gap_offset]
  [../]
  [./node_volume]
  [../]
[]

[AuxKernels]
  [./gap_offset]
    type = BoundaryOffsetPD
    variable = gap_offset
  [../]
  [./node_volume]
    type = NodalVolumePD
    variable = node_volume
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./blk1]
    formulation = BOND
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./material_pd]
    type = ComputeSmallStrainVariableHorizonMaterialBPD
  [../]
[]

[BCs]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1001
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1001
    value = 0
  [../]
  [./fix_z]
    type = DirichletBC
    variable = disp_z
    boundary = 1001
    value = 0
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  end_time = 1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/t_stress/t_stress_crack_infinite_plate_2d.i

# T-stress test for a through crack in a wide ("infinite") plate.
# For a finer mesh this problem converges to the solution T = -sigma.
# Ref: T.L. Anderson, Fracture Mechanics: Fundamentals and Applications

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack_infinite_plate.e
  displacements = 'disp_x disp_y'
  partitioner = centroid
  centroid_partitioner_direction = z
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -100
  [../]
[]

[DomainIntegral]
  integrals = 'JIntegral InteractionIntegralKI InteractionIntegralT'
  boundary = 1001
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  radius_inner = '0.06 0.08 0.10'
  radius_outer = '0.08 0.10 0.12'
  block = 1
  youngs_modulus = 30e+6
  poissons_ratio = 0.3
  2d = true
  axis_2d = 2
  symmetry_plane = 1
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 300
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./Pressure]
    [./top]
      boundary = 200
      function = rampConstantUp
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 30e+6
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
   type = Transient

#  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 3e-7
   nl_rel_tol = 1e-12
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1
[]

[Outputs]
  file_base = t_stress_crack_infinite_plate_out
  exodus = true
  csv = true
[]

modules/rdg/test/tests/advection_1d/1d_aefv_square_wave.i

############################################################
[GlobalParams]
  order = CONSTANT
  family = MONOMIAL
  u = u
  slope_limiting = lslope
  implicit = false
[]
############################################################
[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 100
[]
############################################################
[Functions]
  [./ic_u]
    type = PiecewiseConstant
    axis = x
    direction = right
    xy_data = '0.1 0.5
               0.6 1.0
               1.0 0.5'
  [../]
[]
############################################################
[UserObjects]
  [./lslope]
    type = AEFVSlopeLimitingOneD
    execute_on = 'linear'
    scheme = 'none' #none | minmod | mc | superbee
  [../]

  [./internal_side_flux]
    type = AEFVUpwindInternalSideFlux
    execute_on = 'linear'
  [../]

  [./free_outflow_bc]
    type = AEFVFreeOutflowBoundaryFlux
    execute_on = 'linear'
  [../]
[]
############################################################
[Variables]
  [./u]
  [../]
[]
############################################################
[ICs]
  [./u_ic]
    type = FunctionIC
    variable = 'u'
    function = ic_u
  [../]
[]
############################################################
[Kernels]
  [./time_u]
    implicit = true
    type = TimeDerivative
    variable = u
  [../]
[]
############################################################
[DGKernels]
  [./concentration]
    type = AEFVKernel
    variable = u
    component = 'concentration'
    flux = internal_side_flux
  [../]
[]
############################################################
[BCs]
  [./concentration]
    type = AEFVBC
    boundary = 'left right'
    variable = u
    component = 'concentration'
    flux = free_outflow_bc
  [../]
[]
############################################################
[Materials]
  [./aefv]
    type = AEFVMaterial
    block = 0
  [../]
[]
############################################################
[Executioner]
  type = Transient
  [./TimeIntegrator]
    type = ExplicitMidpoint
  [../]
  solve_type = 'LINEAR'

  l_tol = 1e-4
  nl_rel_tol = 1e-20
  nl_abs_tol = 1e-8
  nl_max_its = 60

  start_time = 0.0
  num_steps = 4 # 4 | 400 for complete run
  dt = 5e-4
  dtmin = 1e-6
[]

[Outputs]
  [./Exodus]
    type = Exodus
    file_base = 1d_aefv_square_wave_none_out
    interval = 2
  [../]
  perf_graph = true
[]

modules/combined/test/tests/j2_plasticity_vs_LSH/necking/j2_hard1_necking.i

#

[Mesh]
  file = necking_quad4.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
    use_displaced_mesh = true
#    save_in_disp_x = force_x
    save_in_disp_y = force_y
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
#  [./force_x]
#    order = FIRST
#    family = LAGRANGE
#  [../]
  [./force_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./y_top]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 't/5'
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 2.4e2
  [../]
  [./j2]
    type = TensorMechanicsPlasticJ2
    yield_strength = str
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 1
    fill_method = symmetric_isotropic
    #with E = 2.1e5 and nu = 0.3
    #changed to SM values using E-nu to Lambda-G
    C_ijkl = '121154 80769.2'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 1
    displacements = 'disp_x disp_y'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 1
    ep_plastic_tolerance = 1E-9
    plastic_models = j2
  [../]
[]

[Executioner]
  end_time = 0.2
  dt = 0.005
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
  [../]
  [./stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]
  [./disp_y]
    type = NodalSum
    variable = disp_y
    boundary = top
  [../]
  [./force_y]
    type = NodalSum
    variable = force_y
    boundary = top
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  print_linear_residuals = false
  perf_graph = true
[]

modules/porous_flow/test/tests/jacobian/chem10.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Dissolution with temperature, with two primary variables = 0
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.0
  [../]
  [./b]
    initial_condition = 0.0
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1.234
  [../]
  [./ini_sec_conc]
    initial_condition = 0.222
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1E5
    stoichiometry = 2
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 2.2E5
    stoichiometry = 3
  [../]
  [./temp]
    type = Diffusion
    variable = temp
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b temp'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '0.5 0.8'
    reactions = '1 3'
    specific_reactive_surface_area = -44.4E-2
    kinetic_rate_constant = 0.678
    activation_energy = 4.4
    molar_volume = 3.3
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = 1.0
    eta_exponent = 1.2
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_sec_conc
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

modules/tensor_mechanics/test/tests/elastic_patch/elastic_patch_quadratic.i

# Patch Test for second order hex elements (HEX20)
#
# From Abaqus, Verification Manual, 1.5.2
#
# This test is designed to compute constant xx, yy, zz, xy, yz, and zx
#  stress on a set of irregular hexes.  The mesh is composed of one
#  block with seven elements.  The elements form a unit cube with one
#  internal element.  There is a nodeset for each exterior node.

# The cube is displaced on all exterior nodes using the functions,
#
#    ux = 1e-4 * (2x + y + z) / 2
#    uy = 1e-4 * (x + 2y + z) / 2
#    ux = 1e-4 * (x + y + 2z) / 2
#
#  giving uniform strains of
#
#    exx = eyy = ezz = 2*exy = 2*eyz = 2*exz = 1e-4
#
#
# Hooke's Law provides an analytical solution for the uniform stress state.
#  For example,
#
#    stress xx = lambda(exx + eyy + ezz) + 2 * G * exx
#    stress xy = 2 * G * exy
#
#   where:
#
#    lambda = (2 * G * nu) / (1 - 2 * nu)
#    G = 0.5 * E / (1 + nu)
#
# For the test below, E = 1e6 and nu = 0.25, giving lambda = G = 4e5
#
# Thus
#
#    stress xx = 4e5 * (3e-4) + 2 * 4e5 * 1e-4 = 200
#    stress xy = 2 * 4e5 * 1e-4 / 2 = 40
#
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]
[Mesh]
  file = elastic_patch_quadratic.e
[] # Mesh

[Functions]
  [./xDispFunc]
    type = ParsedFunction
    value = 5e-5*(2*x+y+z)
  [../]
  [./yDispFunc]
    type = ParsedFunction
    value = 5e-5*(x+2*y+z)
  [../]
  [./zDispFunc]
    type = ParsedFunction
    value = 5e-5*(x+y+2*z)
  [../]
[] # Functions

[Variables]
  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]
  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]
  [./disp_z]
    order = SECOND
    family = LAGRANGE
  [../]
[] # Variables

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydrostatic]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./firstinv]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./secondinv]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./thirdinv]
    order = CONSTANT
    family = MONOMIAL
  [../]
[] # AuxVariables

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_xx
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_yy
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_zz
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
    variable = stress_xy
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 2
    variable = stress_yz
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 0
    variable = stress_zx
  [../]
  [./elastic_energy]
    type = ElasticEnergyAux
    variable = elastic_energy
  [../]
  [./vonmises]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = VonMisesStress
    variable = vonmises
  [../]
  [./hydrostatic]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = Hydrostatic
    variable = hydrostatic
  [../]
  [./fi]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = FirstInvariant
    variable = firstinv
  [../]
  [./si]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = SecondInvariant
    variable = secondinv
  [../]
  [./ti]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    scalar_type = ThirdInvariant
    variable = thirdinv
  [../]
[] # AuxKernels

[BCs]
  [./all_nodes_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = '1 2 3 4 6 7 8 9 10 12 15 17 18 19 20 21 23 24 25 26'
    function = xDispFunc
  [../]
  [./all_nodes_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = '1 2 3 4 6 7 8 9 10 12 15 17 18 19 20 21 23 24 25 26'
    function = yDispFunc
  [../]
  [./all_nodes_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = '1 2 3 4 6 7 8 9 10 12 15 17 18 19 20 21 23 24 25 26'
    function = zDispFunc
  [../]
[] # BCs

[Materials]
  [./elast_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[] # Materials

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 1e-6

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 1
  end_time = 1.0
[] # Executioner

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Outputs

modules/combined/test/tests/sliding_block/sliding/constraint/frictionless_aug.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the augmented lagrangian method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./contact_traction]
  [../]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    save_in = 'saved_x saved_y'
    extra_vector_tags = 'ref'
  [../]
[]


[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 100
  dt = 0.1
  end_time = 15
  num_steps = 200
  l_tol = 1e-6
  nl_rel_tol = 1e-7
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Problem]
  type = AugmentedLagrangianContactProblem
  solution_variables = 'disp_x disp_y'
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
  maximum_lagrangian_update_iterations = 25
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    normalize_penalty = true
    formulation = augmented_lagrange
    tangential_tolerance = 1e-3
    system = constraint
    normal_smoothing_distance = 0.1
    al_penetration_tolerance = 1e-9
  [../]
[]

modules/functional_expansion_tools/examples/1D_volumetric_Cartesian/sub.i

# Basic example coupling a master and sub app in a 1D Cartesian volume.
#
# The master app provides field values to the sub app via Functional Expansions, which then performs
# its calculations. The sub app's solution field values are then transferred back to the master app
# and coupled into the solution of the master app solution.
#
# This example couples Functional Expansions via AuxVariable.
[Mesh]
  type = GeneratedMesh
  dim = 1

  xmin = 0.0
  xmax = 10.0
  nx = 15
[]

# Non-copy transfers only work with AuxVariable, but nothing will be solved without a variable
# defined. The solution is to define an empty variable tha does nothing, but causes MOOSE to solve
# the AuxKernels that we need.
[Variables]
  [./empty]
  [../]
[]

[AuxVariables]
  [./s]
    order = FIRST
    family = LAGRANGE
  [../]
  [./m_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

# We must have a kernel for every variable, hence this null kernel to match the variable 'empty'
[Kernels]
  [./null_kernel]
    type = NullKernel
    variable = empty
  [../]
[]

[AuxKernels]
  [./reconstruct_m_in]
    type = FunctionSeriesToAux
    function = FX_Basis_Value_Sub
    variable = m_in
  [../]
  [./calculate_s] # Something to make 's' change each time, but allow a converging solution
    type = ParsedAux
    variable = s
    args = m_in
    function = '2*exp(-m_in/0.8)'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Sub]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3'
    physical_bounds = '0.0  10.0'
    x = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Sub]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Sub
    variable = s
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

test/tests/utils/2d_linear_interpolation/2d_linear_interpolation_test_internal.i

# Test description - view this file in emacs and adjust the window size to view the file as it was created.
#
# This problem tests the MOOSE function PiecewiseBilinear and the MOOSE utility BilinearInterpolation, which are
# used to solve 2D linear interpolation problems.
#
# The problem is one element with node coordinate locations in x,y,z space as indicated in the ASCII art:
#
#
#                    ^
#                    |
#                    z
#                    |
#
#                    (1,1,2)        (1,2,2)
#                    *--------------*
#                  / |            / |
#                /   |  (2,2,2) /   |
#       (2,1,2) *--------------*    |
#               |    |         |    |
#               |    *---------|----* (1,2,1)  --y-->
#               |  / (1,1,1)   |  /
#               |/             |/
#               *--------------*
#              / (2,1,1)       (2,2,1)
#            /
#          x
#        /
#      |_
#
#  problem time ...0...1...2
#
#
# There are four variables and four functions of the same name, u,v,w, and A.  The diffusion equation is solved
# for each of these variables with a boundary condition of type FunctionDirchletBC applied to a boundary
# (i.e. node set) that includes every node in the element.  Each boundary condition uses a function of type
# PiecewiseBilinear that gets its value from the specified x, y, and z values.
#
# fred is a matrix of data whose first row and first column are vectors that can refer to either spacial positions
# corresponding to an axis or values of time.  The remaining data are values of fred for a given row and column pair.
#
#
# Visualize fred like this:
#
#                          0 1 3  where fred is a csv file that actually looks like this    0,1,3
#                        0 0 0 0                                                            0,0,0,0
#                        1 0 1 3                                                            1,0,1,3
#                        3 0 5 7                                                            3,0,5,7
#
#  Another way to think of fred is:
#
#                                   |0 1 3| - These values can be spacial positions corresponding to
#                                             axis= 0,1, or 2, or time
#
#
#                           |0|     |0 0 0|
#     These values can be - |1|     |0 1 3| - values of fred corresponding to row-column pairs
#     time or spacial       |3|     |0 5 7|
#     positions corresponding
#     to axis= 0,1, or 2
#
#
# The parameters and possible values for the function PiecewiseBilinear are:
#
# x = '0 1 3'
# y = '0 1 3'
# z = '0 0 0 0 1 3 0 5 7'
# axis = 0, 1, or 2
# xaxis = 0, 1, or 2
# yaxis = 0, 1, or 2
# radial = true or false (false is default)
#
# where 0, 1, or 2 refer to the x, y, or z axis.
#
# If the parameter axis is defined, then the first row of fred are spacial position and the first column
# of fred are the values of time.
#
# If the parameter xaxis is defined, then the first row of fred are spacial positions and the first column
# of fred are the values of time ... just like defining the parameter axis.
#
# If the parameter yaxis is defined, then the first row of fred are time values and the first column of fred
# are spacial positions.
#
# If parameters axis AND EITHER xaxis or yaxis are defined together you'll get a moose error.
# i.e.
# axis = 0
# xaxis = 1
# results in an error.  So, if you use the parameter axis, don't use xaxis or yaxis.
#
# If parameters xaxis and yaxis are defined (and radial is false), then the first row of fred are spacial positions corresponding to xaxis value,
# and the first column are spacial positions corresponding to the yaxis value.
#
# If xaxis and yaxis are defined and radial is true, the first row of fred contains values
# corresponding to the radius calculated from the coordinates of each point.  Note that
# the definition of xaxis and yaxis define the "plane" of the radius.  For example,
# xaxis = 0 and yaxis = 1 means that x and y components of the point are use to
# calculate the radius.  xaxis = 1 and yaxis = 2 means that x and z components are used.
# The first column is for time in this case.  xaxis and yaxis have to be specified and
# radial = true for this to work, otherwise a MOOSE error will result.
# This was developed so that an axisymmetric function could be defined for a 3D mesh.
#
[Mesh]
  file = cube.e
  # This problem only has 1 element, so using DistributedMesh in parallel
  # isn't really an option, and we don't care that much about DistributedMesh
  # in serial.
  parallel_type = replicated
[]

[Variables]

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./A]
    order = FIRST
    family = LAGRANGE
  [../]
  [./scaled_u]
    order = FIRST
    family = LAGRANGE
  [../]
  [./R]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]


  [./u]
    type = PiecewiseBilinear
    x = '0 1 3'
    y = '0 1 3'
    z = '0 0 0 0 1 3 0 5 7'
    axis = 0
  [../]
#
# Example 1 - variable u
#
# In this example, the first variable is u and the parameter axis is given the value 0.  For such a case, the first
# row of fred refers to nodal x-coordinate values and the first column of fred (after the first row) refers to the
# times 0, 1, and 3.
#
# So, at time = 0, the value of u at each node is 0, because that's the value of fred for all x-coordinate values at time=0.
#
# At time = 1, the value of u at nodes with x-coordinate = 1 is 1.
#            , the value of u at nodes with x-coordinate = 2 is 2.
#
# You can check this value with your own 2D linear interpolation calculation.  Go ahead and check all the examples!
#
# At time = 2, the value of u at nodes with x-coordinate = 1 is 3.
#            , the value of u at nodes with x-coordinate = 2 is 4.
#
  [./v]
    type = PiecewiseBilinear
    x = '0 1 3'
    y = '0 1 3'
    z = '0 0 0 0 1 3 0 5 7'
    xaxis = 1
  [../]
#
# Example 2 - variable v
#
# In this example, the variable is v and the parameter xaxis is given the value 1.  For such a case, the first
# row of fred refers to nodal y-coordinate values and the first column of fred (after the first row) refers to the
# times 0, 1, and 3.
#
# At time = 0, the value of v at each node is 0, because that's the value of fred for all y-coordinate values at time=0.
#
# At time = 1, the value of v at nodes with y-coordinate = 1 is 1.
#            , the value of v at nodes with y-coordinate = 2 is 2.
#
# At time = 2, the value of v at nodes with y-coordinate = 1 is 3.
#            , the value of v at nodes with y-coordinate = 2 is 4.
#
  [./w]
    type = PiecewiseBilinear
    x = '0 1 3'
    y = '0 1 3'
    z = '0 0 0 0 1 3 0 5 7'
    yaxis = 2
  [../]
#
# Example 3 - variable w
#
# In this example, the variable is w and the parameter yaxis is given the value 2.  For such a case, the first
# row of fred refers to times 0, 1, and 3.  The first column of fred (after the first row) refers to the nodal
# z-coordinate values.
#
# At time = 0, the value of w at each node is 0, because that's the value of fred for all z-coordinate values at time=0.
#
# At time = 1, the value of w at nodes with z-coordinate = 1 is 1.
#            , the value of w at nodes with z-coordinate = 2 is 3.
#
# At time = 2, the value of w at nodes with z-coordinate = 1 is 2.
#            , the value of w at nodes with z-coordinate = 2 is 4.
#
  [./A]
    type = PiecewiseBilinear
    x = '0 1 3'
    y = '0 1 3'
    z = '0 0 0 0 1 3 0 5 7'
    xaxis = 0
    yaxis = 1
  [../]
#
# Example 4 - variable A
#
# In this example, the variable is A and the parameters xaxis AND yaxis BOTH defined and given the values 0 and 1 respectivley.
# For such a case, the first row of fred refers to nodal x-coordinate values.
# The first column refers to nodal y-coordinate values.
#
# In this example the values are the same for every time (except time=0 where the values are undefined)
#
# For nodal coordinates with x=1, y=1 A = 1
#                            x=2, y=1 A = 2
#                            x=1, y=2 A = 3
#                            x=2, y=2 A = 4
#
# You can use this 2D linear interpolation function for anything (BC, Kernel, AuxKernel, Material) that has
# a function as one of its parameters.  For example, this can be used to describe the fission peaking factors
# that vary in time and along the length of a fuel rod, or a fission rate distribution in metal fuel that varies
# as a function of x and y postion, but is constant in time.
#
#
  [./scaled_u]
    type = PiecewiseBilinear
    x = '0 1 3'
    y = '0 1 3'
    z = '0 0 0 0 1 3 0 5 7'
    axis = 0
    scale_factor = 2
  [../]
#
# Example 5 - variable scaled_u.  This is just a scaled version of Example 1 to see if the scale_factor works
#
#
#
  [./R]
    type = PiecewiseBilinear
    x = '0 1 3'
    y = '0 1 3'
    z = '0 0 0 0 1 3 0 5 7'
    xaxis = 0
    yaxis = 1
    radial = true
  [../]
#
# Example 6 - variable R
#
# In this example, the variable is R and the parameters xaxis and yaxis are defined and
# given the values 0 and 1 respectivley.  The parameter radial is also defined and given
# the value true.  In this case, the x and y components of each point are used to
# calculate a radius.  This radius is used in the call to BilinearInterpolation.
# In fred.csv, the first row are the radius values.  The first column is time.
#
# At time = 1, the value of R at nodes with coordinates (x = 1, y = 1, or r = 1.414) is 1.414.
#            , the value of R at nodes with coordinates (x = 1, y = 2, or r = 2.236) is 2.236.
#            , the value of R at nodes with coordinates (x = 2, y = 2, or r = 2.828) is 2.828.
#
# At time = 2, the value of R at nodes with coordinates (x = 1, y = 1, or r = 1.414) is 3.414.
#            , the value of R at nodes with coordinates (x = 1, y = 2, or r = 2.236) is 4.236.
#            , the value of R at nodes with coordinates (x = 2, y = 2, or r = 2.828) is 4.828.
#
# Note that the case of x = 2, y = 1 gives the same result as x = 1, y=2.
#
#
[] # End Functions

[Kernels]

  [./diffu]
    type = Diffusion
    variable = u
  [../]
  [./diffv]
    type = Diffusion
    variable = v
  [../]
  [./diffw]
    type = Diffusion
    variable = w
  [../]
  [./diffA]
    type = Diffusion
    variable = A
  [../]
  [./diff_scaled_u]
    type = Diffusion
    variable = scaled_u
  [../]
  [./diffR]
    type = Diffusion
    variable = R
  [../]
[]

[BCs]

  [./u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = u
  [../]
  [./v]
    type = FunctionDirichletBC
    variable = v
    boundary = '1'
    function = v
  [../]
  [./w]
    type = FunctionDirichletBC
    variable = w
    boundary = '1'
    function = w
  [../]
  [./A]
    type = FunctionDirichletBC
    variable = A
    boundary = '1'
    function = A
  [../]
  [./scaled_u]
    type = FunctionDirichletBC
    variable = scaled_u
    boundary = '1'
    function = scaled_u
  [../]
  [./R]
    type = FunctionDirichletBC
    variable = R
    boundary = '1'
    function = R
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  end_time = 2
  nl_rel_tol = 1e-12
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/tensor_mechanics/test/tests/j_integral_vtest/j_int_surfbreak_ellip_crack_sym_mm_cfp.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = ellip_crack_4sym_norad_mm.e
  partitioner = centroid
  centroid_partitioner_direction = z
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./resid_z]
  [../]
[]

[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 0.1'
    scale_factor = -689.5 #MPa
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  crack_direction_method = CurvedCrackFront
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0.0 1.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  crack_front_points = '0             254           0
                        127.308       248.843       0
                        249.446       233.581       0
                        361.455       208.835       0
                        508.003       152.398       0
                        602.415       80.3208       0
                        635           0             0'
  radius_inner = '12.5 25.0 37.5'
  radius_outer = '25.0 37.5 50.0'
  intersecting_boundary = '1 2'
  symmetry_plane = 2
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 12
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 5
      function = rampConstantUp
    [../]
  [../]
[] # BCs

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 206800
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]

   type = Transient
  # Two sets of linesearch options are for petsc 3.1 and 3.3 respectively
  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

#  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   nl_rel_tol = 1e-11
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1
[]

[Postprocessors]
  [./_dt]
    type = TimestepSize
  [../]
  [./nl_its]
    type = NumNonlinearIterations
  [../]
  [./lin_its]
    type = NumLinearIterations
  [../]
  [./react_z]
    type = NodalSum
    variable = resid_z
    boundary = 5
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = j_int_surfbreak_ellip_crack_sym_mm_cfp_out
  exodus = true
  csv = true
[]

test/tests/transfers/multiapp_copy_transfer/third_monomial_from_sub/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [./aux]
    family = MONOMIAL
    order = THIRD
  [../]
[]

[AuxKernels]
  [./aux]
    type = FunctionAux
    variable = aux
    execute_on = initial
    function = 10*x*y
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  hide = 'u'
  exodus = true
[]

test/tests/nodalkernels/jac_test/jac_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./nodal_ode]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[NodalKernels]
  [./td]
    type = TimeDerivativeNodalKernel
    variable = nodal_ode
  [../]
  [./constant_rate]
    type = ConstantRate
    variable = nodal_ode
    rate = 1.0
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = NEWTON
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
  nl_max_its = 1
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/num_adaptivity_cycles/num_adaptivity_cycles_toggle_adaptivity.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./force]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./force]
    type = BodyForce
    variable = u
    function = force
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 1

  solve_type = 'PJFNK'

[]

[Adaptivity]
  cycles_per_step = 1
  marker = box
  max_h_level = 2
  initial_steps = 4
  initial_marker = initial_box
  [./Markers]
    [./box]
      bottom_left = '0.3 0.3 0'
      inside = refine
      top_right = '0.6 0.6 0'
      outside = dont_mark
      type = BoxMarker
    [../]
    [./initial_box]
      type = BoxMarker
      bottom_left = '0.8 0.1 0'
      top_right = '0.9 0.2 0'
      inside = refine
      outside = dont_mark
    [../]
  [../]
[]

[UserObjects]
  [./toggle_adaptivity]
    type = ToggleMeshAdaptivity
    mesh_adaptivity = 'off'
  [../]
[]

[Postprocessors]
  [./adaptivity_cycles]
    type = NumAdaptivityCycles
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  csv = true
[]

python/peacock/tests/common/transient_heat_test.i

[Mesh]
  file = cube.e
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = u
  [../]

  [./ie]
    type = SpecificHeatConductionTimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0.0
  [../]

  [./top]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1.0
  [../]
[]

[Materials]
  [./constant]
    type = HeatConductionMaterial
    block = 1
    thermal_conductivity = 1
    specific_heat = 1
  [../]
  [./density]
    type = Density
    block = 1
    density = 1
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'



  start_time = 0.0
  num_steps = 5
  dt = .1
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/porous_flow/test/tests/infiltration_and_drainage/bw02.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 200
  ny = 1
  xmin = -10
  xmax = 10
  ymin = 0
  ymax = 0.05
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-1 5E-1 5E-1'
    x = '0 1 10'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = pressure
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureBW
    Sn = 0.0
    Ss = 1.0
    C = 1.5
    las = 2
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      viscosity = 4
      density0 = 10
      thermal_expansion = 0
    [../]
  [../]
[]

[Materials]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pressure
    capillary_pressure = pc
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityBW
    Sn = 0.0
    Ss = 1.0
    Kn = 0
    Ks = 1
    C = 1.5
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.25
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0  0 1 0  0 0 1'
  [../]
[]

[Variables]
  [./pressure]
    initial_condition = -9E2
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pressure
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pressure
    gravity = '-0.1 0 0'
  [../]
[]

[AuxVariables]
  [./SWater]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./SWater]
    type = MaterialStdVectorAux
    property = PorousFlow_saturation_qp
    index = 0
    variable = SWater
  [../]
[]

[BCs]
  [./recharge]
    type = PorousFlowSink
    variable = pressure
    boundary = right
    flux_function = -1.25 # corresponds to Rstar being 0.5 because i have to multiply by density*porosity
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -ksp_diagonal_scale -ksp_diagonal_scale_fix -ksp_gmres_modifiedgramschmidt -snes_linesearch_monitor'
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2               1E-10      1E-10      10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  petsc_options = '-snes_converged_reason'
  end_time = 2

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[VectorPostprocessors]
  [./swater]
    type = LineValueSampler
    variable = SWater
    start_point = '-10 0 0'
    end_point = '10 0 0'
    sort_by = x
    num_points = 80
    execute_on = timestep_end
  [../]
[]

[Outputs]
  file_base = bw02
  sync_times = '0.5 2 8'
  [./exodus]
    type = Exodus
    sync_only = true
  [../]
  [./along_line]
    type = CSV
    sync_only = true
  [../]
[]

modules/porous_flow/test/tests/jacobian/basic_advection5.i

# Basic advection with 1 porepressure as a PorousFlow variable
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./u]
  [../]
  [./P]
  [../]
[]

[ICs]
  [./P]
    type = RandomIC
    variable = P
    min = -1
    max = 1
  [../]
  [./u]
    type = RandomIC
    variable = u
  [../]
[]

[Kernels]
  [./dummy_P]
    type = NullKernel
    variable = P
  [../]
  [./u_advection]
    type = PorousFlowBasicAdvection
    variable = u
    phase = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = P
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1
    m = 0.6
    sat_lr = 0.1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 3
      density0 = 4
      thermal_expansion = 0
      viscosity = 150.0
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
  [../]
  [./ppss_qp]
    type = PorousFlow1PhaseP
    porepressure = P
    capillary_pressure = pc
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./effective_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
    fluid = true
    biot_coefficient = 0.5
    solid_bulk = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityKozenyCarman
    poroperm_function = kozeny_carman_phi0
    k0 = 5
    m = 2
    n = 2
    phi0 = 0.1
  [../]
  [./relperm_qp]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./darcy_velocity_qp]
    type = PorousFlowDarcyVelocityMaterial
    gravity = '0.25 0 0'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-snes_type'
    petsc_options_value = ' test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/contact/test/tests/bouncing-block-contact/frictionless-mortar-min-lm-mortar-disp.i

starting_point = 2e-1
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
  scaling = 1e0
[]

[Mesh]
  file = long-bottom-block-1elem-blocks.e
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
  [./normal_lm]
    block = 3
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [normal_lm]
    type = NormalMortarLMMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    slave_disp_y = disp_y
    use_displaced_mesh = true
    compute_primal_residuals = false
    ncp_function_type = 'min'
  []
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  active = 'num_nl cumulative contact'
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '3'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/combined/test/tests/axisymmetric_2d3d_solution_function/2d_sm.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = 2d.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./temp]
    initial_condition = 400
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hoop_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydrostatic_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temp_inner_func]
    type = PiecewiseLinear
    xy_data = '0 400
               1 350'
  [../]
  [./temp_outer_func]
    type = PiecewiseLinear
    xy_data = '0 400
               1 400'
  [../]
  [./press_func]
    type = PiecewiseLinear
    xy_data = '0 15
               1 15'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    temp = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./vonmises_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises_stress
    quantity = vonmises
  [../]
  [./hoop_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = hoop_stress
    quantity = hoop
    execute_on = timestep_end
  [../]
  [./hydrostatic_stress]
    type = MaterialTensorAux
    tensor = stress
    variable = hydrostatic_stress
    quantity = hydrostatic
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1'
    value = 0.0
  [../]

  [./Pressure]
    [./internal_pressure]
      boundary = '4'
      factor = 1.e6
      function = press_func
    [../]
  [../]

  [./t_in]
    type = FunctionDirichletBC
    variable = temp
    boundary = '4'
    function = temp_inner_func
  [../]

  [./t_out]
    type = FunctionDirichletBC
    variable = temp
    boundary = '2'
    function = temp_outer_func
  [../]
[]

[Constraints]
  [./disp_y]
    type = EqualValueBoundaryConstraint
    variable = disp_y
    master = '65'
    slave = '3'
    penalty = 1e18
  [../]
[]

[Materials]
  [./thermal1]
    type = HeatConductionMaterial
    block = '1'
    thermal_conductivity = 25.0
    specific_heat = 490.0
    temp = temp
  [../]

  [./solid_mechanics1]
    type = Elastic
    block = '1'
    disp_r = disp_x
    disp_z = disp_y
    temp = temp
    youngs_modulus = 193.05e9
    poissons_ratio = 0.3
    thermal_expansion = 13e-6
    stress_free_temperature = 295.00
    formulation = NonlinearRZ
  [../]

  [./density]
    type = Density
    block = '1'
    density = 8000.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-ksp_snes_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = ' 201                hypre    boomeramg      4'
  line_search = 'none'
  l_max_its = 25
  nl_max_its = 20
  nl_rel_tol = 1e-9
  l_tol = 1e-2

  start_time = 0.0
  dt = 1
  end_time = 1
  dtmin = 1
[]

[Outputs]
  file_base = 2d_out
  exodus = true
  [./console]
    type = Console
    max_rows = 25
  [../]
[]

test/tests/interfaces/random/random.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./random_nodal]
  [../]
  [./random_elemental]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./random_nodal]
    type = RandomAux
    variable = random_nodal
    execute_on = 'LINEAR'
  [../]
  [./random_elemental]
    type = RandomAux
    variable = random_elemental
    generate_integers = true
    execute_on = 'LINEAR'
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/diff02.i

# Test the Jacobian of the diffusive component of the PorousFlowDisperiveFlux kernel for two phases.
# By setting disp_long and disp_trans to zero, the purely diffusive component of the flux
# can be isolated. Uses constant tortuosity and diffusion coefficients

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  xmin = 0
  xmax = 1
  ny = 1
  ymin = 0
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./sgas]
  [../]
  [./massfrac0]
  [../]
[]

[AuxVariables]
  [./massfrac1]
  [../]
[]

[ICs]
  [./sgas]
    type = RandomIC
    variable = sgas
    max = 1
    min = 0
  [../]
  [./massfrac0]
    type = RandomIC
    variable = massfrac0
    min = 0
    max = 1
  [../]
  [./massfrac1]
    type = RandomIC
    variable = massfrac1
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = sgas
    gravity = '1 0 0'
    disp_long = '0 0'
    disp_trans = '0 0'
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = massfrac0
    gravity = '1 0 0'
    disp_long = '0 0'
    disp_trans = '0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'sgas massfrac0'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1e7
      density0 = 10
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 1e7
      density0 = 1
      thermal_expansion = 0
      viscosity = 0.1
    [../]
  [../]
[]

[Materials]
  [./temp]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = 1
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac0 massfrac1'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./poro]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./diff]
    type = PorousFlowDiffusivityConst
     diffusion_coeff = '1e-2 1e-1 1e-2 1e-1'
     tortuosity = '0.1 0.2'
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityConst
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityConst
    phase = 1
  [../]
[]

[Preconditioning]
  active = smp
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

[Outputs]
  exodus = false
[]

test/tests/outputs/iterative/iterative_csv.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./iterations]
     type = NumResidualEvaluations
     execute_on = linear
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = NEWTON
  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = CSV
    nonlinear_residual_dt_divisor = 100
    linear_residual_dt_divisor = 100
    start_time = 1.8
    end_time = 1.85
    execute_on = 'nonlinear linear timestep_end'
  [../]
[]

test/tests/geomsearch/3d_moving_penetration/pl_test4tt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test4tt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.09
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.09
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test4tt_out
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/hgs01.i

# apply a half-gaussian sink flux and observe the correct behavior
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 2
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas massfrac_ph0_sp0 massfrac_ph1_sp0'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]

[Kernels]
  [./dummy_ppwater]
    type = TimeDerivative
    variable = ppwater
  [../]
  [./dummy_ppgas]
    type = TimeDerivative
    variable = ppgas
  [../]
  [./dummy_m00]
    type = TimeDerivative
    variable = massfrac_ph0_sp0
  [../]
  [./dummy_m10]
    type = TimeDerivative
    variable = massfrac_ph1_sp0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 1.5
      density0 = 1
      thermal_expansion = 0
      viscosity = 1
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 0.5
      density0 = 0.5
      thermal_expansion = 0
      viscosity = 1.4
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1 0 0 0 2 0 0 0 3'
  [../]
  [./relperm0]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
  [./relperm1]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
  [../]
[]

[BCs]
  [./flux_w]
    type = PorousFlowHalfGaussianSink
    boundary = 'left'
    center = 0.1
    sd = 1.1
    max = 2.2
    variable = ppwater
    mass_fraction_component = 0
    fluid_phase = 0
    use_relperm = true
    use_mobility = true
    flux_function = 'x*y'
  [../]
  [./flux_g]
    type = PorousFlowHalfGaussianSink
    boundary = 'top left front'
    center = 0.5
    sd = 1.1
    max = -2.2
    mass_fraction_component = 0
    variable = ppgas
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '-x*y'
  [../]
  [./flux_1]
    type = PorousFlowHalfGaussianSink
    boundary = 'right'
    center = -0.1
    sd = 1.1
    max = 1.2
    mass_fraction_component = 1
    variable = massfrac_ph0_sp0
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '-1.1*x*y'
  [../]
  [./flux_2]
    type = PorousFlowHalfGaussianSink
    boundary = 'bottom'
    center = 3.2
    sd = 1.1
    max = 1.2
    mass_fraction_component = 1
    variable = massfrac_ph1_sp0
    fluid_phase = 1
    use_relperm = true
    use_mobility = true
    flux_function = '0.5*x*y'
  [../]
[]


[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 2
[]

[Outputs]
  file_base = pls03
[]

modules/porous_flow/test/tests/sinks/s06.i

# apply a half-cubic sink flux and observe the correct behavior
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 2
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pp'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1.1
  [../]
[]

[Variables]
  [./pp]
  [../]
[]

[ICs]
  [./pp]
    type = FunctionIC
    variable = pp
    function = x*(y+1)
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pp
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 1.3
      density0 = 1.1
      thermal_expansion = 0
      viscosity = 1.1
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = pp
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-5 0 0 0 1E-5 0 0 0 1E-5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
  [../]
[]

[AuxVariables]
  [./flux_out]
  [../]
[]

[Functions]
  [./mass10]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)*if(pp>=0,1,pow(1+pow(-al*pp,1.0/(1-m)),-m))'
    vars = 'vol por dens0 pp bulk al m'
    vals = '0.25 0.1 1.1 p10 1.3 1.1 0.5'
  [../]
  [./rate10]
    type = ParsedFunction
    value = 'fcn*if(pp>center,m,if(pp<themin,0,m/c/c/c*(2*(pp-center)+c)*((pp-center)-c)*((pp-center)-c)))'
    vars = 'm fcn pp  center sd  themin c'
    vals = '2 3   p10 0.9    0.5 0.1   -0.8'
  [../]
  [./mass10_expect]
    type = ParsedFunction
    value = 'mass_prev-rate*area*dt'
    vars = 'mass_prev rate     area dt'
    vals = 'm10_prev  m10_rate 0.5 2E-3'
  [../]
  [./mass11]
    type = ParsedFunction
    value = 'vol*por*dens0*exp(pp/bulk)*if(pp>=0,1,pow(1+pow(-al*pp,1.0/(1-m)),-m))'
    vars = 'vol por dens0 pp bulk al m'
    vals = '0.25 0.1 1.1 p11 1.3 1.1 0.5'
  [../]
  [./rate11]
    type = ParsedFunction
    value = 'fcn*if(pp>center,m,if(pp<themin,0,m/c/c/c*(2*(pp-center)+c)*((pp-center)-c)*((pp-center)-c)))'
    vars = 'm fcn pp  center sd  themin c'
    vals = '2 3   p11 0.9    0.5 0.1   -0.8'
  [../]
  [./mass11_expect]
    type = ParsedFunction
    value = 'mass_prev-rate*area*dt'
    vars = 'mass_prev rate     area dt'
    vals = 'm11_prev  m11_rate 0.5 2E-3'
  [../]
[]

[Postprocessors]
  [./flux00]
    type = PointValue
    variable = flux_out
    point = '0 0 0'
  [../]
  [./flux01]
    type = PointValue
    variable = flux_out
    point = '0 1 0'
  [../]
  [./flux10]
    type = PointValue
    variable = flux_out
    point = '1 0 0'
  [../]
  [./flux11]
    type = PointValue
    variable = flux_out
    point = '1 1 0'
  [../]
  [./p00]
    type = PointValue
    point = '0 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./p10]
    type = PointValue
    point = '1 0 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m10]
    type = FunctionValuePostprocessor
    function = mass10
    execute_on = 'initial timestep_end'
  [../]
  [./m10_prev]
    type = FunctionValuePostprocessor
    function = mass10
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./m10_rate]
    type = FunctionValuePostprocessor
    function = rate10
    execute_on = 'timestep_end'
  [../]
  [./m10_expect]
    type = FunctionValuePostprocessor
    function = mass10_expect
    execute_on = 'timestep_end'
  [../]
  [./p01]
    type = PointValue
    point = '0 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./p11]
    type = PointValue
    point = '1 1 0'
    variable = pp
    execute_on = 'initial timestep_end'
  [../]
  [./m11]
    type = FunctionValuePostprocessor
    function = mass11
    execute_on = 'initial timestep_end'
  [../]
  [./m11_prev]
    type = FunctionValuePostprocessor
    function = mass11
    execute_on = 'timestep_begin'
    outputs = 'console'
  [../]
  [./m11_rate]
    type = FunctionValuePostprocessor
    function = rate11
    execute_on = 'timestep_end'
  [../]
  [./m11_expect]
    type = FunctionValuePostprocessor
    function = mass11_expect
    execute_on = 'timestep_end'
  [../]
[]

[BCs]
  [./flux]
    type = PorousFlowHalfCubicSink
    boundary = 'left right'
    max = 2
    cutoff = -0.8
    center = 0.9
    variable = pp
    use_mobility = false
    use_relperm = false
    fluid_phase = 0
    flux_function = 3
    save_in = flux_out
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_max_it -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres asm lu 10000 NONZERO 2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 2E-3
  end_time = 6E-2
  nl_rel_tol = 1E-12
  nl_abs_tol = 1E-12
[]

[Outputs]
  file_base = s06
  [./console]
    type = Console
    execute_on = 'nonlinear linear'
    interval = 5
  [../]
  [./csv]
    type = CSV
    execute_on = 'timestep_end'
    interval = 3
  [../]
[]

modules/tensor_mechanics/test/tests/homogenization/anisoShortFiber.i

#
# Test from:
#   Multiple Scale Analysis of Heterogeneous Elastic Structures Using
#   Homogenization Theory and Voronoi Cell Finite Element Method
#   by S.Ghosh et. al, Int J. Solids Structures, Vol. 32, No. 1,
#   pp. 27-62, 1995.
#
# From that paper, elastic constants should be:
# E1111: 122.4
# E2222: 151.2
# E1212:  42.1
# E1122:  36.23
#
# Note: this is for plane stress conditions
#

[Mesh]
  file = anisoShortFiber.e
  # To calculate matching values, refine the mesh one time.
  # We use a coarse mesh for speed in this test.
  # uniform_refine = 1
[]

[Variables]
  [./dx_xx]
    order = FIRST
    family = LAGRANGE
  [../]
  [./dy_xx]
    order = FIRST
    family = LAGRANGE
  [../]

  [./dx_yy]
    order = FIRST
    family = LAGRANGE
  [../]
  [./dy_yy]
    order = FIRST
    family = LAGRANGE
  [../]

  [./dx_xy]
    order = FIRST
    family = LAGRANGE
  [../]
  [./dy_xy]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[Kernels]

  [./div_x_xx]
    type = StressDivergenceTensors
    component = 0
    variable = dx_xx
    displacements = 'dx_xx dy_xx'
    use_displaced_mesh = false
    base_name = xx
  [../]
  [./div_y_xx]
    type = StressDivergenceTensors
    component = 1
    variable = dy_xx
    displacements = 'dx_xx dy_xx'
    use_displaced_mesh = false
    base_name = xx
  [../]
  [./div_x_yy]
    type = StressDivergenceTensors
    component = 0
    variable = dx_yy
    displacements = 'dx_yy dy_yy'
    use_displaced_mesh = false
    base_name = yy
  [../]
  [./div_y_yy]
    type = StressDivergenceTensors
    component = 1
    variable = dy_yy
    displacements = 'dx_yy dy_yy'
    use_displaced_mesh = false
    base_name = yy
  [../]
  [./div_x_xy]
    type = StressDivergenceTensors
    component = 0
    variable = dx_xy
    displacements = 'dx_xy dy_xy'
    use_displaced_mesh = false
    base_name = xy
  [../]
  [./div_y_xy]
    type = StressDivergenceTensors
    component = 1
    variable = dy_xy
    displacements = 'dx_xy dy_xy'
    use_displaced_mesh = false
    base_name = xy
  [../]

  [./aeh_dx_xx]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dx_xx
    component = 0
    column = xx
    base_name = xx
  [../]
  [./aeh_dy_xx]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dy_xx
    component = 1
    column = xx
    base_name = xx
  [../]

  [./aeh_dx_yy]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dx_yy
    component = 0
    column = yy
    base_name = yy
  [../]
  [./aeh_dy_yy]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dy_yy
    component = 1
    column = yy
    base_name = yy
  [../]

  [./aeh_dx_xy]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dx_xy
    component = 0
    column = xy
    base_name = xy
  [../]
  [./aeh_dy_xy]
    type = AsymptoticExpansionHomogenizationKernel
    variable = dy_xy
    component = 1
    column = xy
    base_name = xy
  [../]
[]

[BCs]

  [./Periodic]
    [./top_bottom]
      primary = 30
      secondary = 40
      translation = '0 1 0'
    [../]

    [./left_right]
      primary = 10
      secondary = 20
      translation = '1 0 0'
    [../]
  [../]

  [./dx_xx_anchor]
    type = DirichletBC
    variable = dx_xx
    boundary = 1
    value = 0.0
  [../]

  [./dy_xx_anchor]
    type = DirichletBC
    variable = dy_xx
    boundary = 1
    value = 0.0
  [../]

  [./dx_yy_anchor]
    type = DirichletBC
    variable = dx_yy
    boundary = 1
    value = 0.0
  [../]

  [./dy_yy_anchor]
    type = DirichletBC
    variable = dy_yy
    boundary = 1
    value = 0.0
  [../]

  [./dx_xy_anchor]
    type = DirichletBC
    variable = dx_xy
    boundary = 1
    value = 0.0
  [../]

  [./dy_xy_anchor]
    type = DirichletBC
    variable = dy_xy
    boundary = 1
    value = 0.0
  [../]
[]

[Materials]

  [./elastic_stress_xx]
    type = ComputeLinearElasticStress
    base_name = xx
  [../]
  [./elastic_stress_yy]
    type = ComputeLinearElasticStress
    base_name = yy
  [../]
  [./elastic_stress_xy]
    type = ComputeLinearElasticStress
    base_name = xy
  [../]
  [./strain_xx]
    type = ComputeSmallStrain
    displacements = 'dx_xx dy_xx'
    base_name = xx
  [../]
  [./strain_yy]
    type = ComputeSmallStrain
    displacements = 'dx_yy dy_yy'
    base_name = yy
  [../]
  [./strain_xy]
    type = ComputeSmallStrain
    displacements = 'dx_xy dy_xy'
    base_name = xy
  [../]


  [./block1]
    type =  ComputeElasticityTensor
    block = 1
    fill_method = symmetric9
    C_ijkl = '81.360117 26.848839 26.848839 81.360117 26.848839 81.360117 27.255639 27.255639 27.255639'
    base_name = xx
  [../]

  [./block2]
    type =  ComputeElasticityTensor
    block = 1
    fill_method = symmetric9
    C_ijkl = '81.360117 26.848839 26.848839 81.360117 26.848839 81.360117 27.255639 27.255639 27.255639'
    base_name = yy
  [../]

  [./block3]
    type =  ComputeElasticityTensor
    block = 1
    fill_method = symmetric9
    C_ijkl = '81.360117 26.848839 26.848839 81.360117 26.848839 81.360117 27.255639 27.255639 27.255639'
    base_name = xy
  [../]

  [./block4]
    type =  ComputeElasticityTensor
    block = 2
    fill_method = symmetric9
    C_ijkl = '416.66667 83.33333 83.33333 416.6667 83.33333 416.66667 166.66667 166.66667 166.66667'
    base_name = xx
  [../]

  [./block5]
    type =  ComputeElasticityTensor
    block = 2
    fill_method = symmetric9
    C_ijkl = '416.66667 83.33333 83.33333 416.6667 83.33333 416.66667 166.66667 166.66667 166.66667'
    base_name = yy
  [../]

  [./block6]
    type =  ComputeElasticityTensor
    block = 2
    fill_method = symmetric9
    C_ijkl = '416.66667 83.33333 83.33333 416.6667 83.33333 416.66667 166.66667 166.66667 166.66667'
    base_name = xy
 [../]

[]

[Postprocessors]

  [./E1111]
    type = AsymptoticExpansionHomogenizationElasticConstants
    base_name = xx
    row = xx
    column = xx
    dx_xx = dx_xx
    dy_xx = dy_xx
    dx_yy = dx_yy
    dy_yy = dy_yy
    dx_xy = dx_xy
    dy_xy = dy_xy
    execute_on = 'initial timestep_end'
  [../]

  [./E2222]
    type = AsymptoticExpansionHomogenizationElasticConstants
    base_name = xx
    row = yy
    column = yy
    dx_xx = dx_xx
    dy_xx = dy_xx
    dx_yy = dx_yy
    dy_yy = dy_yy
    dx_xy = dx_xy
    dy_xy = dy_xy
    execute_on = 'initial timestep_end'
  [../]

  [./E1122]
    type = AsymptoticExpansionHomogenizationElasticConstants
    base_name = xx
    row = xx
    column = yy
    dx_xx = dx_xx
    dy_xx = dy_xx
    dx_yy = dx_yy
    dy_yy = dy_yy
    dx_xy = dx_xy
    dy_xy = dy_xy
    execute_on = 'initial timestep_end'
  [../]


  [./E2211]
    type = AsymptoticExpansionHomogenizationElasticConstants
    base_name = xy
    row = yy
    column = xx
    dx_xx = dx_xx
    dy_xx = dy_xx
    dx_yy = dx_yy
    dy_yy = dy_yy
    dx_xy = dx_xy
    dy_xy = dy_xy
    execute_on = 'initial timestep_end'
  [../]


  [./E1212]
    type = AsymptoticExpansionHomogenizationElasticConstants
    base_name = xx
    row = xy
    column = xy
    dx_xx = dx_xx
    dy_xx = dy_xx
    dx_yy = dx_yy
    dy_yy = dy_yy
    dx_xy = dx_xy
    dy_xy = dy_xy
    execute_on = 'initial timestep_end'
  [../]
[]

[Preconditioning]
 [./SMP]
  type = SMP
  full = true
 [../]
[]


[Executioner]

  type = Transient

  solve_type = 'PJFNK'

  petsc_options = '-ksp_gmres_modifiedgramschmidt'
  petsc_options_iname = '-ksp_gmres_restart -pc_type   -pc_hypre_type -pc_hypre_boomeramg_max_iter -pc_hypre_boomeramg_grid_sweeps_all -ksp_type -mat_mffd_type'
  petsc_options_value = '201                 hypre       boomeramg      2                            2                                   fgmres    ds'

  line_search = 'none'


  l_tol = 1e-4
  l_max_its = 40
  nl_max_its = 40
  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-10

  start_time = 0.0
  end_time = 10.0
  num_steps = 1
  dt = 10

[]


[Outputs]
  exodus = true
  csv = true
[]

test/tests/misc/check_error/same_name_variable_test.i

# A non-linear and aux variable with the same name

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 5
  ny = 5
  elem_type = QUAD4
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Executioner]
  type = Transient
[]

test/tests/time_integrators/scalar/stiff.i

# This is a linear model problem described in Frank et al, "Order
# results for implicit Runge-Kutta methods applied to stiff systems",
# SIAM J. Numerical Analysis, vol. 22, no. 3, 1985, pp. 515-534.
#
# Problems "PL" and "PNL" from page 527 of the paper:
# { dy1/dt = lambda*y1 + y2**p, y1(0) = -1/(lambda+p)
# { dy2/dt = -y2,               y2(0) = 1
#
# The exact solution is:
# y1 = -exp(-p*t)/(lambda+p)
# y2 = exp(-t)
#
# According to the following paragraph from the reference above, the
# p=1 version of this problem should not exhibit order reductions
# regardless of stiffness, while the nonlinear version (p>=2) will
# exhibit order reductions down to the "stage order" of the method for
# lambda large, negative.

# Use Dollar Bracket Expressions (DBEs) to set the value of LAMBDA in
# a single place.  You can also set this on the command line with
# e.g. LAMBDA=-4, but note that this does not seem to override the
# value set in the input file.  This is a bit different from the way
# that command line values normally work...
# Note that LAMBDA == Y2_EXPONENT is not allowed!
# LAMBDA = -10
# Y2_EXPONENT = 2

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 1
  ny = 1
  elem_type = QUAD4
[]

[Variables]
  [./y1]
    family = SCALAR
    order = FIRST
  [../]
  [./y2]
    family = SCALAR
    order = FIRST
  [../]
[]

[ICs]
  [./y1_init]
    type = FunctionScalarIC
    variable = y1
    function = y1_exact
  [../]
  [./y2_init]
    type = FunctionScalarIC
    variable = y2
    function = y2_exact
  [../]
[]

[ScalarKernels]
  [./y1_time]
    type = ODETimeDerivative
    variable = y1
  [../]
  [./y1_space]
    type = ParsedODEKernel
    variable = y1
    function = '-(${LAMBDA})*y1 - y2^${Y2_EXPONENT}'
    args = 'y2'
  [../]
  [./y2_time]
    type = ODETimeDerivative
    variable = y2
  [../]
  [./y2_space]
    type = ParsedODEKernel
    variable = y2
    function = 'y2'
  [../]
[]

[Executioner]
  type = Transient
  [./TimeIntegrator]
    type = LStableDirk2
  [../]
  start_time = 0
  end_time = 1
  dt = 0.125
  solve_type = 'PJFNK'
  nl_max_its = 6
  nl_abs_tol = 1.e-13
  nl_rel_tol = 1.e-32 # Force nl_abs_tol to be used.
  line_search = 'none'
[]

[Functions]
  [./y1_exact]
    type = ParsedFunction
    value = '-exp(-${Y2_EXPONENT}*t)/(lambda+${Y2_EXPONENT})'
    vars = 'lambda'
    vals = ${LAMBDA}
  [../]
  [./y2_exact]
    type = ParsedFunction
    value = exp(-t)
  [../]
[]

[Postprocessors]
  [./error_y1]
    type = ScalarL2Error
    variable = y1
    function = y1_exact
    execute_on = 'initial timestep_end'
  [../]
  [./error_y2]
    type = ScalarL2Error
    variable = y2
    function = y2_exact
    execute_on = 'initial timestep_end'
  [../]
  [./max_error_y1]
    # Estimate ||e_1||_{\infty}
    type = TimeExtremeValue
    value_type = max
    postprocessor = error_y1
    execute_on = 'initial timestep_end'
  [../]
  [./max_error_y2]
    # Estimate ||e_2||_{\infty}
    type = TimeExtremeValue
    value_type = max
    postprocessor = error_y2
    execute_on = 'initial timestep_end'
  [../]
  [./value_y1]
    type = ScalarVariable
    variable = y1
    execute_on = 'initial timestep_end'
  [../]
  [./value_y2]
    type = ScalarVariable
    variable = y2
    execute_on = 'initial timestep_end'
  [../]
  [./value_y1_abs_max]
    type = TimeExtremeValue
    value_type = abs_max
    postprocessor = value_y1
    execute_on = 'initial timestep_end'
  [../]
  [./value_y2_abs_max]
    type = TimeExtremeValue
    value_type = abs_max
    postprocessor = value_y2
    execute_on = 'initial timestep_end'
  [../]
[]

[Outputs]
  csv = true
[]

modules/heat_conduction/test/tests/verify_against_analytical/ad_1D_transient.i

# This test solves a 1D transient heat equation
# The error is caclulated by comparing to the analytical solution
# The problem setup and analytical solution are taken from "Advanced Engineering
# Mathematics, 10th edition" by Erwin Kreyszig.
# http://www.amazon.com/Advanced-Engineering-Mathematics-Erwin-Kreyszig/dp/0470458364
# It is Example 1 in section 12.6 on page 561

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 160
  xmax = 80
[]

[Variables]
  [./T]
  [../]
[]

[ICs]
  [./T_IC]
    type = FunctionIC
    variable = T
    function = '100*sin(pi*x/80)'
  [../]
[]

[Kernels]
  [./HeatDiff]
    type = ADHeatConduction
    variable = T
  [../]
  [./HeatTdot]
    type = ADHeatConductionTimeDerivative
    variable = T
  [../]
[]

[BCs]
  [./sides]
    type = DirichletBC
    variable = T
    boundary = 'left right'
    value = 0
  [../]
[]

[Materials]
  [./k]
    type = GenericConstantMaterial
    prop_names = 'thermal_conductivity'
    prop_values = '0.95' #copper in cal/(cm sec C)
  [../]
  [./cp]
    type = GenericConstantMaterial
    prop_names = 'specific_heat'
    prop_values = '0.092' #copper in cal/(g C)
  [../]
  [./rho]
    type = GenericConstantMaterial
    prop_names = 'density'
    prop_values = '8.92' #copper in g/(cm^3)
  [../]
[]

[Postprocessors]
  [./error]
    type = NodalL2Error
    function = '100*sin(pi*x/80)*exp(-0.95/(0.092*8.92)*pi^2/80^2*t)'
    variable = T
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  l_tol = 1e-6
  dt = 2
  end_time = 100
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/ad_elastic/finite_elastic-noad.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 3
  nz = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  # scale with one over Young's modulus
  [./disp_x]
    scaling = 1e-10
  [../]
  [./disp_y]
    scaling = 1e-10
  [../]
  [./disp_z]
    scaling = 1e-10
  [../]
[]

[Kernels]
  [./stress_x]
    type = StressDivergenceTensors
    component = 0
    variable = disp_x
    use_displaced_mesh = true
  [../]
  [./stress_y]
    type = StressDivergenceTensors
    component = 1
    variable = disp_y
    use_displaced_mesh = true
  [../]
  [./stress_z]
    type = StressDivergenceTensors
    component = 2
    variable = disp_z
    use_displaced_mesh = true
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.3
    youngs_modulus = 1e10
  [../]
  [./strain]
    type = ComputeFiniteStrain
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05
  solve_type = 'NEWTON'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

[Outputs]
  exodus = true
  file_base = finite_elastic_out
[]

modules/tensor_mechanics/test/tests/finite_strain_elastic/finite_strain_stress_errorcheck.i

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0.1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1.0e10
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.05

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  dtmin = 0.05
  num_steps = 1
[]

test/tests/transfers/multiapp_postprocessor_interpolation_transfer/multilevel_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./sub_average]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0 0.5 0.5 0'
    input_files = multilevel_sub.i
  [../]
[]

[Transfers]
  [./sub_average]
    type = MultiAppPostprocessorInterpolationTransfer
    direction = from_multiapp
    multi_app = sub
    variable = sub_average
    postprocessor = sub_average
  [../]
[]

modules/porous_flow/test/tests/energy_conservation/heat04_fullysat_action.i

# heat04, but using an action
#
# The sample is a single unit element, with fixed displacements on
# all sides.  A heat source of strength S (J/m^3/s) is applied into
# the element.  There is no fluid flow or heat flow.  The rise
# in temperature, porepressure and stress, and the change in porosity is
# matched with theory.
#
# In this case, fluid mass must be conserved, and there is no
# volumetric strain, so
# porosity * fluid_density = constant
# Also, the energy-density in the rock-fluid system increases with S:
# d/dt [(1 - porosity) * rock_density * rock_heat_cap * T + porosity * fluid_density * fluid_heat_cap * T] = S
# Also, the porosity evolves according to THM as
# porosity = biot + (porosity0 - biot) * exp( (biot - 1) * P / fluid_bulk + rock_thermal_exp * T)
# Finally, the effective stress must be exactly zero (as there is
# no strain).
#
# Let us assume that
# fluid_density = dens0 * exp(P / fluid_bulk - fluid_thermal_exp * T)
# Then the conservation of fluid mass means
# porosity = por0 * exp(- P / fluid_bulk + fluid_thermal_exp * T)
# where dens0 * por0 = the initial fluid mass.
# The last expression for porosity, combined with the THM one,
# and assuming that biot = 1 for simplicity, gives
# porosity = 1 + (porosity0 - 1) * exp(rock_thermal_exp * T) = por0 * exp(- P / fluid_bulk + fluid_thermal_exp * T) .... (A)
#
# This stuff may be substituted into the heat energy-density equation:
# S = d/dt [(1 - porosity0) * exp(rock_thermal_exp * T) * rock_density * rock_heat_cap * T + porosity * fluid_density * fluid_heat_cap * T]
#
# If S is constant then
# S * t = (1 - porosity0) * exp(rock_thermal_exp * T) * rock_density * rock_heat_cap * T + porosity * fluid_density * fluid_heat_cap * T
# with T(t=0) = 0 then Eqn(A) implies that por0 = porosity0 and
# P / fluid_bulk = fluid_thermal_exp * T - log(1 + (por0 - 1) * exp(rock_thermal_exp * T)) + log(por0)
#
# Parameters:
# A = 2
# fluid_bulk = 2.0
# dens0 = 3.0
# fluid_thermal_exp = 0.5
# fluid_heat_cap = 2
# por0 = 0.5
# rock_thermal_exp = 0.25
# rock_density = 5
# rock_heat_capacity = 0.2

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      thermal_expansion = 0.5
      cv = 2
      cp = 2
      bulk_modulus = 2.0
      density0 = 3.0
    [../]
  [../]
[]

[PorousFlowFullySaturated]
  coupling_type = ThermoHydroMechanical
  displacements = 'disp_x disp_y disp_z'
  porepressure = pp
  temperature = temp
  dictator_name = Sir
  biot_coefficient = 1.0
  gravity = '0 0 0'
  fp = the_simple_fluid
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = Sir
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./pp]
  [../]
  [./temp]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./confinez]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = 'back front'
  [../]
[]

[Kernels]
  [./heat_source]
    type = BodyForce
    function = 1
    variable = temp
  [../]
[]

[Functions]
  [./err_T_fcn]
    type = ParsedFunction
    vars = 'por0 rte temp rd rhc m0 fhc source'
    vals = '0.5 0.25 t0   5  0.2 1.5 2  1'
    value = '((1-por0)*exp(rte*temp)*rd*rhc*temp+m0*fhc*temp-source*t)/(source*t)'
  [../]
  [./err_pp_fcn]
    type = ParsedFunction
    vars = 'por0 rte temp rd rhc m0 fhc source bulk pp fte'
    vals = '0.5 0.25 t0   5  0.2 1.5 2  1      2    p0 0.5'
    value = '(bulk*(fte*temp-log(1+(por0-1)*exp(rte*temp))+log(por0))-pp)/pp'
  [../]
[]

[AuxVariables]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1 1.5'
    # bulk modulus is lambda + 2*mu/3 = 1 + 2*1.5/3 = 2
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./porosity]
    type = PorousFlowPorosity
    thermal = true
    fluid = true
    mechanical = true
    ensure_positive = false
    biot_coefficient = 1.0
    porosity_zero = 0.5
    thermal_expansion_coeff = 0.25
    solid_bulk = 2
  [../]
  [./rock_heat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 0.2
    density = 5.0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '0 0 0 0 0 0 0 0 0'
  [../]
  [./thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '0 0 0  0 0 0  0 0 0'
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = pp
  [../]
  [./t0]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = temp
  [../]
  [./porosity]
    type = PointValue
    outputs = 'console csv'
    execute_on = 'timestep_end'
    point = '0 0 0'
    variable = porosity
  [../]
  [./stress_xx]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_yy]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_zz]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./fluid_mass]
    type = PorousFlowFluidMass
    fluid_component = 0
    execute_on = 'timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
  [./total_heat]
    type = PorousFlowHeatEnergy
    phase = 0
    execute_on = 'timestep_end'
    use_displaced_mesh = true
    outputs = 'console csv'
  [../]
  [./err_T]
    type = FunctionValuePostprocessor
    function = err_T_fcn
  [../]
  [./err_P]
    type = FunctionValuePostprocessor
    function = err_pp_fcn
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-12 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 5
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = heat04_fullysat_action
  csv = true
[]

test/tests/kernels/ode/parsedode_pp_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx = 2
  ny = 2
  elem_type = QUAD4
[]

[Variables]
  [./x]
    family = SCALAR
    order = FIRST
    initial_condition = 0
  [../]
[]

[ScalarKernels]
  [./dt]
    type = ODETimeDerivative
    variable = x
  [../]
  [./ode1]
    type = ParsedODEKernel
    function = '-mytime'
    postprocessors = mytime
    variable = x
  [../]
[]

[Postprocessors]
  [./computed_x]
    type = ScalarVariable
    variable = x
    execute_on = 'initial timestep_end'
  [../]

  [./mytime]
    type = FunctionValuePostprocessor
    function = t
    execute_on = 'initial timestep_begin'
  [../]

  [./exact_x]
    type = FunctionValuePostprocessor
    function = '0.5*t^2'
    execute_on = 'initial timestep_end'
  [../]

  [./l2err_x]
    type = ScalarL2Error
    variable = x
    function = '0.5*t^2'
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  dt = 0.1
  num_steps = 10

  solve_type = 'NEWTON'
[]

[Outputs]
  file_base = ode_pp_test_out
  hide = 'x mytime'
  csv = true
[]

modules/combined/test/tests/phase_field_fracture/void2d_iso.i

[Mesh]
  type = FileMesh
  file = void2d_mesh.xda
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./All]
        add_variables = true
        strain = SMALL
        additional_generate_output = stress_yy
      [../]
    [../]
  [../]
  [./PhaseField]
    [./Nonconserved]
      [./c]
        free_energy = F
        mobility = L
        kappa = kappa_op
      [../]
    [../]
  [../]
[]

[Functions]
  [./tfunc]
    type = ParsedFunction
    value = t
  [../]
  [./void_prop_func]
    type = ParsedFunction
    value = 'rad:=0.2;m:=50;r:=sqrt(x^2+y^2);1-exp(-(r/rad)^m)+1e-8'
  [../]
  [./gb_prop_func]
    type = ParsedFunction
    value = 'rad:=0.2;thk:=0.05;m:=50;sgnx:=1-exp(-(x/rad)^m);v:=sgnx*exp(-(y/thk)^m);0.005*(1-v)+0.001*v'
  [../]
[]

[Kernels]
  [./solid_x]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_x
    component = 0
    c = c
  [../]
  [./solid_y]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_y
    component = 1
    c = c
  [../]
[]

[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = tfunc
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
[]

[Materials]
  [./pfbulkmat]
    type = GenericConstantMaterial
    prop_names = 'l visco'
    prop_values = '0.01 0.1'
  [../]
  [./pfgc]
    type = GenericFunctionMaterial
    prop_names = 'gc_prop'
    prop_values = 'gb_prop_func'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
    elasticity_tensor_prefactor = void_prop_func
  [../]
  [./define_mobility]
    type = ParsedMaterial
    material_property_names = 'gc_prop visco'
    f_name = L
    function = '1.0/(gc_prop * visco)'
  [../]
  [./define_kappa]
    type = ParsedMaterial
    material_property_names = 'gc_prop l'
    f_name = kappa_op
    function = 'gc_prop * l'
  [../]
  [./damage_stress]
    type = ComputeLinearElasticPFFractureStress
    c = c
    E_name = 'elastic_energy'
    D_name = 'degradation'
    F_name = 'fracture_energy'
    decomposition_type = strain_spectral
  [../]
  [./degradation]
    type = DerivativeParsedMaterial
    f_name = degradation
    args = 'c'
    function = '(1.0-c)^2*(1.0 - eta) + eta'
    constant_names       = 'eta'
    constant_expressions = '0.0'
    derivative_order = 2
  [../]
  [./fracture_energy]
    type = DerivativeParsedMaterial
    f_name = fracture_energy
    args = 'c'
    material_property_names = 'gc_prop l'
    function = 'c^2 * gc_prop / 2 / l'
    derivative_order = 2
  [../]
  [./fracture_driving_energy]
    type = DerivativeSumMaterial
    args = c
    sum_materials = 'elastic_energy fracture_energy'
    derivative_order = 2
    f_name = F
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      lu           1'

  nl_rel_tol = 1e-9
  nl_max_its = 10
  l_tol = 1e-4
  l_max_its = 40

  dt = 1e-4
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/combined_creep_plasticity/combined_creep_plasticity_start_time.i

#
# This test is Example 2 from "A Consistent Formulation for the Integration
#   of Combined Plasticity and Creep" by P. Duxbury, et al., Int J Numerical
#   Methods in Engineering, Vol. 37, pp. 1277-1295, 1994.
#
# The problem is a one-dimensional bar which is loaded from yield to a value of twice
#   the initial yield stress and then unloaded to return to the original stress. The
#   bar must harden to the required yield stress during the load ramp, with no
#   further yielding during unloading. The initial yield stress (sigma_0) is prescribed
#   as 20 with a plastic strain hardening of 100. The mesh is a 1x1x1 cube with symmetry
#   boundary conditions on three planes to provide a uniaxial stress field.
#
#  In the PowerLawCreep model, the creep strain rate is defined by:
#
#   edot = A(sigma)**n * exp(-Q/(RT)) * t**m
#
#   The creep law specified in the paper, however, defines the creep strain rate as:
#
#   edot = Ao * mo * (sigma)**n * t**(mo-1)
#      with the creep parameters given by
#         Ao = 1e-7
#         mo = 0.5
#         n  = 5
#
#   thus, input parameters for the test were specified as:
#         A = Ao * mo = 1e-7 * 0.5 = 0.5e-7
#         m = mo-1 = -0.5
#         n = 5
#         Q = 0
#
#   The variation of load P with time is:
#       P = 20 + 20t      0 < t < 1
#       P = 40 - 40(t-1)  1 < t 1.5
#
#  The analytic solution for total strain during the loading period 0 < t < 1 is:
#
#    e_tot = (sigma_0 + 20*t)/E + 0.2*t + A * t**0.5  * sigma_0**n * [ 1 + (5/3)*t +
#               + 2*t**2 + (10/7)*t**3 + (5/9)**t**4 + (1/11)*t**5 ]
#
#    and during the unloading period 1 < t < 1.5:
#
#    e_tot = (sigma_1 - 40*(t-1))/E + 0.2 + (4672/693) * A * sigma_0**n +
#               A * sigma_0**n * [ t**0.5 * ( 32 - (80/3)*t + 16*t**2 - (40/7)*t**3
#                                  + (10/9)*t**4 - (1/11)*t**5 ) - (11531/693) ]
#
#         where sigma_1 is the stress at time t = 1.
#
#  Assuming a Young's modulus (E) of 1000 and using the parameters defined above:
#
#    e_tot(1) = 2.39734
#    e_tot(1.5) = 3.16813
#
#
#   The numerically computed solution is:
#
#    e_tot(1) = 2.39718         (~0.006% error)
#    e_tot(1.5) = 3.15555       (~0.40% error)
#
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy elastic_strain_yy creep_strain_yy plastic_strain_yy'
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '  10   11   11.5'
    y = '-20 -40   -20'
  [../]

  [./dts]
    type = PiecewiseLinear
    x = '10        10.5    11.0    11.5'
    y = '0.015  0.015  0.005  0.005'
  [../]
[]

[BCs]
  [./u_top_pull]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    factor = 1
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    youngs_modulus = 1e3
    poissons_ratio = 0.3
  [../]
  [./creep_plas]
    type = ComputeMultipleInelasticStress
    block = 0
    tangent_operator = elastic
    inelastic_models = 'creep plas'
    max_iterations = 50
    absolute_tolerance = 1e-05
    combined_inelastic_strain_weights = '0.0 1.0'
  [../]
  [./creep]
    type = PowerLawCreepStressUpdate
    block = 0
    coefficient = 0.5e-7
    n_exponent = 5
    m_exponent = -0.5
    activation_energy = 0
    start_time = 10
  [../]
  [./plas]
    type = IsotropicPlasticityStressUpdate
    block = 0
    hardening_constant = 100
    yield_stress = 20
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 6
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-10
  l_tol = 1e-5
  start_time = 10.0
  end_time = 11.5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform_inclined3.i

# Plastic deformation, tensile failure, inclined normal = (0, 1, 0)
# With Young = 10, poisson=0.25 (Lame lambda=4, mu=4)
# applying the following
# deformation to the ymax surface of a unit cube:
# disp_x = 4*t
# disp_y = t
# disp_z = 3*t
# should yield trial stress:
# stress_yy = 12*t
# stress_yx = 16*t
# stress_yz = 12*t
# Use tensile strength = 6, we should return to stress_yy = 6,
# and stress_xx = stress_zz = 2*t up to t=1 when the system is completely
# plastic, so these stress components will not change
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = top
    function = 4*t
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = t
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = top
    function = 3*t
  [../]
[]

[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 80
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1111077
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 6
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 40
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '4 4'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakInclinedPlaneStressUpdate
    normal_vector = '0 1 0'
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0
    smoothing_tol = 0
    yield_function_tol = 1E-5
  [../]
[]

[Executioner]
  end_time = 2
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform_inclined3
  csv = true
[]

modules/combined/test/tests/elastic_patch/ad_elastic_patch_rz_nonlinear.i

#
# This problem is taken from the Abaqus verification manual:
#   "1.5.4 Patch test for axisymmetric elements"
# The stress solution is given as:
#   xx = yy = zz = 19900
#   xy = 0
#
# If strain = log(1+1e-2) = 0.00995033...
# then
# stress = E/(1+PR)/(1-2*PR)*(1-PR +PR +PR)*strain = 19900.6617
# with E = 1e6 and PR = 0.25.
#
# The code computes stress = 19900.6617 when
# increment_calculation = eigen.  There is a small error when the
# rashidapprox option is used.
#
# Since the strain is 1e-3 in all three directions, the new density should be
#   new_density = original_density * V_0 / V
#   new_density = 0.283 / (1 + 9.95e-3 + 9.95e-3 + 9,95e-3) = 0.2747973
#
# The code computes a new density of .2746770


[GlobalParams]
  displacements = 'disp_x disp_y'
  temperature = temp
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = elastic_patch_rz.e
[]

[Variables]
  [./temp]
    initial_condition = 117.56
  [../]
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  decomposition_method = EigenSolution
  add_variables = true
  generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
[]

[Kernels]
  [./heat]
    type = TimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = 10
    function = '1e-2*x'
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 10
    function = '1e-2*y'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.25
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Materials]
  [./density]
    type = ADDensity
    density = 0.283
    outputs = all
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/phase_field_fracture/crack2d_computeCrackedStress_smallstrain.i

#This input uses PhaseField-Nonconserved Action to add phase field fracture bulk rate kernels
[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 40
    ny = 20
    ymax = 0.5
  []
  [./noncrack]
    type = BoundingBoxNodeSetGenerator
    new_boundary = noncrack
    bottom_left = '0.5 0 0'
    top_right = '1 0 0'
    input = gen
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./strain_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./All]
        add_variables = true
        strain = SMALL
        planar_formulation = PLANE_STRAIN
        additional_generate_output = 'stress_yy'
        strain_base_name = uncracked
      [../]
    [../]
  [../]
  [./PhaseField]
    [./Nonconserved]
      [./c]
        free_energy = E_el
        kappa = kappa_op
        mobility = L
      [../]
    [../]
  [../]
[]

[Kernels]
  [./solid_x]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_x
    component = 0
    c = c
  [../]
  [./solid_y]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_y
    component = 1
    c = c
  [../]
  [./off_disp]
    type = AllenCahnElasticEnergyOffDiag
    variable = c
    displacements = 'disp_x disp_y'
    mob_name = L
  [../]
[]

[AuxKernels]
  [./strain_yy]
    type = RankTwoAux
    variable = strain_yy
    rank_two_tensor = uncracked_mechanical_strain
    index_i = 1
    index_j = 1
  [../]
[]

[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 't'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = noncrack
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0
  [../]
[]

[Materials]
  [./pfbulkmat]
    type = GenericConstantMaterial
    prop_names = 'gc_prop l visco'
    prop_values = '1e-3 0.05 1e-6'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '127.0 70.8 70.8 127.0 70.8 127.0 73.55 73.55 73.55'
    fill_method = symmetric9
    base_name = uncracked
    euler_angle_1 = 30
    euler_angle_2 = 0
    euler_angle_3 = 0
  [../]
  [./elastic]
    type = ComputeLinearElasticStress
    base_name = uncracked
  [../]
  [./cracked_stress]
    type = ComputeCrackedStress
    c = c
    kdamage = 1e-6
    F_name = E_el
    use_current_history_variable = true
    uncracked_base_name = uncracked
  [../]
[]

[Postprocessors]
  [./av_stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./av_strain_yy]
    type = SideAverageValue
    variable = disp_y
    boundary = top
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_factor_mat_solving_package'
  petsc_options_value = 'lu superlu_dist'

  nl_rel_tol = 1e-8
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 10

  dt = 5e-5
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

test/tests/multiapps/restart/master2.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  ymin = 0
  xmax = 1
  ymax = 1
  nx = 10
  ny = 10
[]

[Functions]
  [./v_fn]
    type = ParsedFunction
    value = t*x
  [../]
  [./ffn]
    type = ParsedFunction
    value = x
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
  [./ufn]
    type = BodyForce
    variable = u
    function = ffn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = 'left right top bottom'
    function = v_fn
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub_app]
    app_type = MooseTestApp
    type = TransientMultiApp
    input_files = 'sub2.i'
    execute_on = timestep_end
    positions = '0 -1 0'
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub_app
    source_variable = u
    variable = v
  [../]
[]

[Problem]
  restart_file_base = master_out_cp/0005
[]

test/tests/transfers/multiapp_nearest_node_transfer/parallel_master.i

# This test was introduced for Issue #804 which saw data corruption
# during NearestNodeTransfer when running in parallel

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 100
  parallel_type = replicated
[]

[Variables]
  [./u]
     order = FIRST
     family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./from_sub]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 1.0 0.0'
    input_files = parallel_sub.i
    execute_on = 'timestep_end'
   [../]
[]

[Transfers]
# Surface to volume data transfer
  [./from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = from_sub
    execute_on = 'timestep_end'
  [../]
[]

test/tests/materials/stateful_prop/stateful_prop_on_bnd_only.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 10
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./heat]
    type = MatDiffusionTest
    variable = u
    prop_name = thermal_conductivity
  [../]

  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0.0
  [../]

  [./right]
    type = MTBC
    variable = u
    boundary = right
    grad = 1.0
    prop_name = thermal_conductivity
  [../]
[]

[Materials]
  [./volatile]
    type = GenericConstantMaterial
    prop_names = 'thermal_conductivity'
    prop_values = 10
    block = 0
  [../]

  [./stateful_on_boundary]
    type = StatefulSpatialTest
    boundary = right
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 5
  dt = .1
[]

[Outputs]
  file_base = out_bnd_only
  exodus = true
[]

test/tests/variables/get_elemental_value/get_elemental_value.i

# Tests the getElementalValue function of MooseVariableFE.
#
# The tested aux copies the first elemental value of another variable. The
# setup is the following IVP:
#   du/dt = 1
#   u(0) = 0
# Therefore the solution is u(t) = t. Five time steps of dt = 1 are taken.
# The expected output for each time level is thus the following:
#   current: [0,1,2,3,4,5]
#   old:     [0,0,1,2,3,4]
#   older:   [0,0,0,1,2,3]

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 2
[]

[Variables]
  [./copied_var]
  [../]
[]

[AuxVariables]
  [./test_var]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./test_var_aux]
    type = GetElementalValueAux
    variable = test_var
    copied_variable = copied_var
    # The parameter "time_level" is provided by tests file
  [../]
[]

[ICs]
  [./copied_var_ic]
    type = ConstantIC
    variable = copied_var
    value = 0
  [../]
[]

[Kernels]
  [./time_der]
    type = TimeDerivative
    variable = copied_var
  [../]
  [./src]
    type = BodyForce
    variable = copied_var
    function = 1
  [../]
[]

[Executioner]
  type = Transient
  scheme = implicit-euler
  dt = 1
  num_steps = 5
  abort_on_solve_fail = true

  solve_type = NEWTON
[]

[Postprocessors]
  [./test_pp]
    type = ElementAverageValue
    variable = test_var
  [../]
[]

[Outputs]
  csv = true
[]

modules/porous_flow/test/tests/jacobian/basic_advection6.i

# Basic advection with 2 porepressure as PorousFlow variables
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./u]
  [../]
  [./P0]
  [../]
  [./P1]
  [../]
[]

[ICs]
  [./P0]
    type = RandomIC
    variable = P0
    min = -1
    max = 0
  [../]
  [./P1]
    type = RandomIC
    variable = P1
    min = 0
    max = 1
  [../]
  [./u]
    type = RandomIC
    variable = u
  [../]
[]

[Kernels]
  [./dummy_P0]
    type = NullKernel
    variable = P0
  [../]
  [./dummy_P1]
    type = NullKernel
    variable = P1
  [../]
  [./u_advection]
    type = PorousFlowBasicAdvection
    variable = u
    phase = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'P0 P1'
    number_fluid_phases = 2
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    alpha = 1
    m = 0.6
    sat_lr = 0.1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 3
      density0 = 4
      thermal_expansion = 0
      viscosity = 150.0
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 4
      density0 = 3
      thermal_expansion = 0
      viscosity = 130.0
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
  [../]
  [./ppss_qp]
    type = PorousFlow2PhasePP
    phase0_porepressure = P0
    phase1_porepressure = P1
    capillary_pressure = pc
  [../]
  [./simple_fluid0_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./effective_fluid_pressure]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
    fluid = true
    biot_coefficient = 0.5
    solid_bulk = 1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityKozenyCarman
    poroperm_function = kozeny_carman_phi0
    k0 = 5
    m = 2
    n = 2
    phi0 = 0.1
  [../]
  [./relperm0_qp]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./relperm1_qp]
    type = PorousFlowRelativePermeabilityCorey
    n = 3
    phase = 1
    s_res = 0.0
    sum_s_res = 0.1
  [../]
  [./darcy_velocity_qp]
    type = PorousFlowDarcyVelocityMaterial
    gravity = '0.25 0 0'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-snes_type'
    petsc_options_value = ' test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/chemical_reactions/test/tests/aqueous_equilibrium/1species.i

# Simple equilibrium reaction example to illustrate the use of the AqueousEquilibriumReactions
# action.
# In this example, a single primary species a is transported by diffusion and convection
# from the left of the porous medium, reacting to form an equilibrium species pa2 according to
# the equilibrium reaction specified in the AqueousEquilibriumReactions block as:
#
#  reactions = '2a = pa2 1'
#
# where the 2 is the weight of the equilibrium species, and the 1 refers to the equilibrium
# constant (log10(Keq) = 1).
#
# The AqueousEquilibriumReactions action creates all the required kernels and auxkernels
# to compute the reaction given by the above equilibrium reaction equation.
#
# Specifically, it adds to following:
# * An AuxVariable named 'pa2' (given in the reactions equations)
# * A AqueousEquilibriumRxnAux AuxKernel for this AuxVariable with all parameters
# * A CoupledBEEquilibriumSub Kernel for each primary species with all parameters
# * A CoupledDiffusionReactionSub Kernel for each primary species with all parameters
# * A CoupledConvectionReactionSub Kernel for each primary species with all parameters if
# pressure is a coupled variable

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = BoundingBoxIC
      x1 = 0.0
      y1 = 0.0
      x2 = 1e-2
      y2 = 1
      inside = 1.0e-2
      outside = 1.0e-10
      variable = a
    [../]
  [../]
[]

[AuxVariables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./pressure]
    type = FunctionIC
    variable = pressure
    function = 2-x
  [../]
[]

[ReactionNetwork]
  [./AqueousEquilibriumReactions]
    primary_species = a
    reactions = '2a = pa2 1'
    secondary_species = pa2
    pressure = pressure
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_diff]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./a_conv]
    type = PrimaryConvection
    variable = a
    p = pressure
  [../]
[]

[BCs]
  [./a_right]
    type = ChemicalOutFlowBC
    variable = a
    boundary = right
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '1e-4 1e-4 0.2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-12
  start_time = 0.0
  end_time = 100
  dt = 10.0
[]

[Outputs]
  file_base = 1species_out
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

test/tests/postprocessors/nodal_var_value/nodal_var_value.i

[Mesh]
  file = square-2x2-nodeids.e
  # NodalVariableValue is not safe on renumbered meshes
  allow_renumbering = false
[]

[Variables]
  active = 'u v'

  [./u]
    order = SECOND
    family = LAGRANGE
  [../]

  [./v]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Functions]
  active = 'force_fn exact_fn left_bc'

  [./force_fn]
    type = ParsedFunction
    value = '1-x*x+2*t'
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = '(1-x*x)*t'
  [../]

  [./left_bc]
    type = ParsedFunction
    value = t
  [../]
[]

[Kernels]
  active = '
    time_u diff_u ffn_u
    time_v diff_v'

  [./time_u]
    type = TimeDerivative
    variable = u
  [../]

  [./diff_u]
    type = Diffusion
    variable = u
  [../]

  [./ffn_u]
    type = BodyForce
    variable = u
    function = force_fn
  [../]

  [./time_v]
    type = TimeDerivative
    variable = v
  [../]

  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[BCs]
  active = 'all_u left_v right_v'

  [./all_u]
    type = FunctionDirichletBC
    variable = u
    boundary = '1'
    function = exact_fn
  [../]

  [./left_v]
    type = FunctionDirichletBC
    variable = v
    boundary = '3'
    function = left_bc
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = '2'
    value = 0
  [../]
[]

[Postprocessors]
  active = 'l2 scalednode1 node1 node4'

  [./l2]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]

  [./node1]
    type = NodalVariableValue
    variable = u
    nodeid = 15
  [../]

  [./scalednode1]
    type = NodalVariableValue
    variable = u
    nodeid = 15
    scale_factor = 2
  [../]

  [./node4]
    type = NodalVariableValue
    variable = v
    nodeid = 10
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  dt = 0.1
  start_time = 0
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_nodal_var_value
  exodus = true
[]

test/tests/mesh/adapt/interval.i

[Mesh]
  dim = 2
  file = square.e
  uniform_refine = 3
[]

[Variables]
  active = 'u v'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'udiff uconv uie vdiff vconv vie'

  [./udiff]
    type = Diffusion
    variable = u
  [../]

  [./uconv]
    type = Convection
    variable = u
    velocity = '10 1 0'
  [../]

  [./uie]
    type = TimeDerivative
    variable = u
  [../]

  [./vdiff]
    type = Diffusion
    variable = v
  [../]

  [./vconv]
    type = Convection
    variable = v
    velocity = '-10 1 0'
  [../]

  [./vie]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  active = 'uleft uright vleft vright'

  [./uleft]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./uright]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]

  [./vleft]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 1
  [../]

  [./vright]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  start_time = 0.0
  num_steps = 4
  dt = .1

  [./Adaptivity]
    interval = 2
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
  [../]
[]

[Outputs]
  exodus = true
[]

modules/chemical_reactions/test/tests/exceptions/extra_gamma.i

# Additional activity coefficient in AqueousEquilibriumRxnAux AuxKernel

[Mesh]
  type = GeneratedMesh
  dim = 2
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[AuxVariables]
  [./c]
  [../]
  [./gamma_a]
  [../]
  [./gamma_b]
  [../]
  [./gamma_c]
  [../]
[]

[AuxKernels]
  [./c]
    type = AqueousEquilibriumRxnAux
    variable = c
    v = 'a b'
    gamma_v = 'gamma_a gamma_b gamma_c'
    sto_v = '1 1'
    log_k = 1
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = porosity
    prop_values = 0.2
  [../]
[]

[Executioner]
  type = Transient
  end_time = 1
[]

test/tests/kernels/ad_mat_diffusion/ad_1D_transient.i

# This test solves a 1D transient heat equation
# The error is caclulated by comparing to the analytical solution
# The problem setup and analytical solution are taken from "Advanced Engineering
# Mathematics, 10th edition" by Erwin Kreyszig.
# http://www.amazon.com/Advanced-Engineering-Mathematics-Erwin-Kreyszig/dp/0470458364
# It is Example 1 in section 12.6 on page 561

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 160
  xmax = 80
[]

[Variables]
  [./T]
  [../]
[]

[ICs]
  [./T_IC]
    type = FunctionIC
    variable = T
    function = '100*sin(pi*x/80)'
  [../]
[]

[Kernels]
  [./diff]
    type = ADMatDiffusion
    variable = T
    diffusivity = diffusivity
  [../]
  [./dt]
    type = CoefTimeDerivative
    variable = T
    Coefficient = 0.82064
  [../]
[]

[BCs]
  [./sides]
    type = DirichletBC
    variable = T
    boundary = 'left right'
    value = 0
  [../]
[]

[Materials]
  [./k]
    type = GenericConstantMaterial
    prop_names = 'diffusivity'
    prop_values = '0.95'
  [../]
[]

[Executioner]
  type = Transient
  dt = 1e-2
  end_time = 1
[]

[Postprocessors]
  [./error]
    type = NodalL2Error
    function = '100*sin(pi*x/80)*exp(-0.95/(0.092*8.92)*pi^2/80^2*t)'
    variable = T
    outputs = console
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_postprocessor_to_scalar/master2_wrong_order.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./from_sub_app]
    order = FOURTH
    family = SCALAR
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.01
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Postprocessors]
  [./average]
    type = ElementAverageValue
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./pp_sub]
    app_type = MooseTestApp
    positions = '0.5 0.5 0
                 0.7 0.7 0
                 0.8 0.8 0'
    execute_on = timestep_end
    type = TransientMultiApp
    input_files = sub2.i
  [../]
[]

[Transfers]
  [./pp_transfer]
    type = MultiAppPostprocessorToAuxScalarTransfer
    direction = from_multiapp
    multi_app = pp_sub
    from_postprocessor = point_value
    to_aux_scalar = from_sub_app
  [../]
[]

modules/xfem/test/tests/single_var_constraint_2d/propagating_2field_1constraint.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.0'
    time_start_cut = 0.0
    time_end_cut = 2.0
  [../]
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./diff_u]
    type = Diffusion
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0
    jump_flux = 0
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./left_v]
    type = DirichletBC
    variable = v
    boundary = 3
    value = 1
  [../]

  [./right_v]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/solid_mechanics/test/tests/combined_creep_plasticity/combined_creep_plasticity_sm1.i

#
# This test is Example 3 from "A Consistent Formulation for the Integration
#   of Combined Plasticity and Creep" by P. Duxbury, et al., Int J Numerical
#   Methods in Engineering, Vol. 37, pp. 1277-1295, 1994.
#
# The problem is a one-dimensional bar which is loaded from yield to a value of twice
#   the initial yield stress and then unloaded to return to the original stress. The
#   bar must harden to the required yield stress during the load ramp, with no
#   further yielding during unloading. The initial yield stress (sigma_0) is prescribed
#   as 20 with a plastic strain hardening of 100. The mesh is a 1x1x1 cube with symmetry
#   boundary conditions on three planes to provide a uniaxial stress field.
#   The temperature is held constant at 1000.
#
#  In the PowerLawCreep model, the creep strain rate is defined by:
#
#   edot = A(sigma)**n * exp(-Q/(RT)) * t**m
#
#   The creep law specified in the paper, however, defines the creep strain rate as:
#
#   edot = Ao * mo * (sigma)**n * t**(mo-1)
#      with the creep parameters given by
#         Ao = 1e-7
#         mo = 0.5
#         n  = 5
#
#   thus, input parameters for the test were specified as:
#         A = Ao * mo = 1e-7 * 0.5 = 0.5e-7
#         m = mo-1 = -0.5
#         n = 5
#         Q = 0
#
#   The variation of load P with time is:
#       P = 20 + 20t      0 < t < 1
#       P = 40 - 40(t-1)  1 < t 1.5
#
#  The analytic solution for total strain during the loading period 0 < t < 1 is:
#
#    e_tot = (sigma_0 + 20*t)/E + 0.2*t + A * t**0.5  * sigma_0**n * [ 1 + (5/3)*t +
#               + 2*t**2 + (10/7)*t**3 + (5/9)**t**4 + (1/11)*t**5 }
#
#    and during the unloading period 1 < t < 1.5:
#
#    e_tot = (sigma_1 - 40*(t-1))/E + 0.2 + (4672/693) * A * sigma_0**n +
#               A * sigma_0**n * [ t**0.5 * ( 32 - (80/3)*t + 16*t**2 - (40/7)*t**3
#                                  + (10/9)*t**4 - (1/11)*t**5 ) - (11531/693) ]
#
#         where sigma_1 is the stress at time t = 1.
#
#  Assuming a Young's modulus (E) of 1000 and using the parameters defined above:
#
#    e_tot(1) = 2.39734
#    e_tot(1.5) = 3.16813
#
#
#   The numerically computed solution is:
#
#    e_tot(1) = 2.39826         (~0.04% error)
#    e_tot(1.5) = 3.15663       (~0.36% error)
#
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '  0   1   1.5'
    y = '-20 -40   -20'
  [../]

  [./dts]
    type = PiecewiseLinear
    x = '0        0.5    1.0    1.5'
    y = '0.015  0.015  0.005  0.005'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    variable = stress_yy
    tensor = stress
    index = 1
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    variable = elastic_strain_yy
    tensor = elastic_strain
    index = 1
  [../]
  [./plastic_strain_yy]
    type = MaterialTensorAux
    variable = plastic_strain_yy
    tensor = plastic_strain
    index = 1
  [../]
  [./creep_strain_yy]
    type = MaterialTensorAux
    variable = creep_strain_yy
    tensor = creep_strain
    index = 1
  [../]
[]

[BCs]
  [./u_top_pull]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    factor = 1
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./creep_plas]
    type = PLC_LSH
    block = 0
    youngs_modulus = 1e3
    poissons_ratio = .3
    coefficient = 0.5e-7
    n_exponent = 5
    m_exponent = -0.5
    activation_energy = 0
    relative_tolerance = 1e-5
    absolute_tolerance = 1e-20
    absolute_stress_tolerance = 1e-5
    max_its = 30
    hardening_constant = 100
    yield_stress = 20
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    formulation = nonlinear3D
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 6
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-10
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.5

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Postprocessors]
  [./timestep]
    type = TimestepSize
  [../]
[]

[Outputs]
  file_base = combined_creep_plasticity_sm_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform2.i

# Using CappedMohrCoulomb with tensile failure only
# checking for small deformation
# A single element is stretched equally in all directions.
# This causes the return direction to be along the sigma_I = sigma_II = sigma_III line
# tensile_strength is set to 1Pa, and smoothing_tol = 0.1Pa
# The smoothed yield function comes from two smoothing operations.
# The first is on sigma_I and sigma_II (sigma_I >= sigma_II >= sigma_III):
# yf = sigma_I + ismoother(0) - tensile_strength
#    = sigma_I + (0.5 * smoothing_tol - smoothing_tol / Pi) - tensile_strength
#    = sigma_I + 0.018169 - 1
# The second has the argument of ismoother equal to -0.018169.
# ismoother(-0.018169) = 0.5 * (-0.018169 + 0.1) - 0.1 * cos (0.5 * Pi * -0.018169 / 0.1) / Pi
#                     = 0.010372
# So the final yield function is
# yf = sigma_I + 0.018169 + 0.010372 - 1 = sigma_I + 0.028541 - 1
# However, because of the asymmetry in smoothing (the yield function is obtained
# by first smoothing sigma_I-ts and sigma_II-ts, and then by smoothing this
# result with sigma_III-ts) the result is sigma_I = sigma_II > sigma_III


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = finite
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = ts
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2
  csv = true
[]

modules/combined/test/tests/solid_mechanics/LinearStrainHardening/sm/LinearStrainHardeningRestart2_sm.i

#
[GlobalParams]
  volumetric_locking_correction = false
[]

[Mesh]
  file = LinearStrainHardening_test.e

  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]

  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[AuxVariables]

  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]

  [./plastic_strain_mag]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Functions]
  [./top_pull]
    type = ParsedFunction
    value = t/5.0
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]


[AuxKernels]

  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]

  [./plastic_strain_xx]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_xx
    index = 0
  [../]

  [./plastic_strain_yy]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_yy
    index = 1
  [../]

  [./plastic_strain_zz]
    type = MaterialTensorAux
    tensor = plastic_strain
    variable = plastic_strain_zz
    index = 2
  [../]

  [./plastic_strain_mag]
    type = MaterialRealAux
    property = effective_plastic_strain
    variable = plastic_strain_mag
  [../]

 []


[BCs]

  [./y_pull_function]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 5
    function = top_pull
  [../]

  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = 0.0
  [../]

  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = 3
    value = 0.0
  [../]

  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]

[]

[Materials]
  [./constant]
    type = LinearStrainHardening
    block = 1
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
    yield_stress = 2.4e2
    hardening_constant = 1206
    relative_tolerance = 1e-25
    absolute_tolerance = 1e-5
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'


  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'


  line_search = 'none'


  l_max_its = 100
  nl_max_its = 100
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9
  start_time = 6e-3
  end_time = 0.0105
#  num_steps = 100
  dt = 1.5e-3
[]

[Outputs]
  exodus = true
  csv = true
[]

[Problem]
  restart_file_base = LinearStrainHardeningRestart1_sm_out_cp/0004
[]

modules/tensor_mechanics/test/tests/mean_cap_TC/small_deform1.i

# apply uniform stretch in x, y and z directions.
# trial_stress(0, 0) = -2
# trial_stress(1, 1) = 6
# trial_stress(2, 2) = 10
# With tensile_strength = 2, the algorithm should return to trace(stress) = 2, or
# stress(0, 0) = -6
# stress(1, 1) = 2
# stress(2, 2) = 6


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-1E-7*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '3E-7*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '5E-7*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = f
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = f
  [../]
[]

[UserObjects]
  [./tensile_strength]
    type = TensorMechanicsHardeningConstant
    value = 2
  [../]
  [./compressive_strength]
    type = TensorMechanicsHardeningConstant
    value = -1
  [../]
  [./cap]
    type = TensorMechanicsPlasticMeanCapTC
    tensile_strength = tensile_strength
    compressive_strength = compressive_strength
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
    use_custom_returnMap = false
    use_custom_cto = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mean_cap]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = cap
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform1
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/tensor_mechanics/test/tests/thermal_expansion/ad_constant_expansion_coeff.i

# This test involves only thermal expansion strains on a 2x2x2 cube of approximate
# steel material.  An initial temperature of 25 degrees C is given for the material,
# and an auxkernel is used to calculate the temperature in the entire cube to
# raise the temperature each time step.  After the first timestep,in which the
# temperature jumps, the temperature increases by 6.25C each timestep.
# The thermal strain increment should therefore be
#     6.25 C * 1.3e-5 1/C = 8.125e-5 m/m.

# This test is also designed to be used to identify problems with restart files

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./temp]
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t*(500.0)+300.0
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./all]
        strain = SMALL
        incremental = true
        add_variables = true
        eigenstrain_names = eigenstrain
        generate_output = 'strain_xx strain_yy strain_zz'
        use_automatic_differentiation = true
      [../]
    [../]
  [../]
[]

[Kernels]
  [./tempfuncaux]
    type = Diffusion
    variable = temp
  [../]
[]

[BCs]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp]
    type = FunctionDirichletBC
    variable = temp
    function = temperature_load
    boundary = 'left right'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ADComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain]
    type = ADComputeThermalExpansionEigenstrain
    stress_free_temperature = 298
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 0.075
  dt = 0.0125
  dtmin = 0.0001
[]

[Outputs]
  csv = true
  exodus = true
[]

[Postprocessors]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
  [../]
  [./strain_zz]
    type = ElementAverageValue
    variable = strain_zz
  [../]
  [./temperature]
    type = AverageNodalVariableValue
    variable = temp
  [../]
[]

modules/tensor_mechanics/test/tests/tensile/small_deform1_update_version.i

# Using TensileStressUpdate
# checking for small deformation
# A single element is stretched by 1E-6m in z direction, and by small amounts in x and y directions
# stress_zz = Youngs Modulus*Strain = 2E6*1E-6 = 2 Pa
# tensile_strength is set to 1Pa
# Then the final stress should return to the yeild surface and the maximum principal stress value should be 1pa.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

  [GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    strain = finite
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0.1E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0.2E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0E6'
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.0
    yield_function_tol = 1.0E-9
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform1_update_version
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/xfem/test/tests/single_var_constraint_2d/stationary_equal.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 5
  ny = 5
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./line_seg_cut_uo]
    type = LineSegmentCutUserObject
    cut_data = '0.5 1.0 0.5 0.0'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0
    jump_flux = 0
    geometric_cut_userobject = 'line_seg_cut_uo'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

tutorials/darcy_thermo_mech/step06_coupled_darcy_heat_conduction/problems/step6a_coupled.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 200
  ny = 10
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
[]

[Variables]
  [pressure]
  []
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[AuxVariables]
  [velocity]
    order = CONSTANT
    family = MONOMIAL_VEC
  []
[]

[Kernels]
  [darcy_pressure]
    type = DarcyPressure
    variable = pressure
  []
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
  [heat_convection]
    type = DarcyAdvection
    variable = temperature
    pressure = pressure
  []
[]

[AuxKernels]
  [velocity]
    type = DarcyVelocity
    variable = velocity
    execute_on = timestep_end
    pressure = pressure
  []
[]

[BCs]
  [inlet]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 4000 # (Pa) From Figure 2 from paper.  First data point for 1mm spheres.
  []
  [outlet]
    type = DirichletBC
    variable = pressure
    boundary = right
    value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
  []
  [inlet_temperature]
    type = FunctionDirichletBC
    variable = temperature
    boundary = left
    function = 'if(t<0,350+50*t,350)'
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = right
  []
[]

[Materials]
  [column]
    type = PackedColumn
    temperature = temperature
    radius = 1
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  automatic_scaling = true

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  end_time = 100
  dt = 0.25
  start_time = -1

  steady_state_tolerance = 1e-5
  steady_state_detection = true

  [TimeStepper]
    type = FunctionDT
    function = 'if(t<0,0.1,0.25)'
  []
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform7.i

# Using CappedMohrCoulomb with tensile failure only
# A single element is incrementally stretched in the in the z and x directions
# This causes the return direction to be along the hypersurface sigma_I = sigma_II
# and the resulting stresses are checked to lie on the expected yield surface

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = finite
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '4*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '4*z*t'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 0.1
  type = Transient
[]


[Outputs]
  file_base = small_deform7
  csv = true
[]

modules/tensor_mechanics/test/tests/jacobian/mc_update33_cosserat.i

# Cosserat version of Capped Mohr Columb (using StressUpdate)
# Compressive + shear failure, starting from a symmetric stress state

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[AuxVariables]
  [./wc_z]
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 4E1
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1
    poisson = 0.25
    layer_thickness = 1.0
    joint_normal_stiffness = 2.0
    joint_shear_stiffness = 1.0
  [../]
  [./strain]
    type = ComputeCosseratIncrementalSmallStrain
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-10 -12 14  -12 -5 -20  14 -20 -8'
    eigenstrain_name = ini_stress
  [../]
  [./cmc]
    type = CappedMohrCoulombCosseratStressUpdate
    host_youngs_modulus = 1
    host_poissons_ratio = 0.25
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticCosseratStress
    inelastic_models = cmc
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/CHSplitFlux/simple_transient_diffusion_flux.i

# Same problem as in moose/test/tests/kernels/simple_transient_diffusion

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./c]
  [../]
  [./mu]
  [../]
  [./jx]
  [../]
  [./jy]
  [../]
[]

[Kernels]
  [./conc]
    type = CHSplitConcentration
    variable = c
    mobility = mobility_prop
    chemical_potential_var = mu
  [../]
  [./chempot]
    type = CHSplitChemicalPotential
    variable = mu
    chemical_potential_prop = mu_prop
    c = c
  [../]
  [./flux_x]
    type = CHSplitFlux
    variable = jx
    component = 0
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./flux_y]
    type = CHSplitFlux
    variable = jy
    component = 1
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./chemical_potential]
    type = DerivativeParsedMaterial
    block = 0
    f_name = mu_prop
    args = c
    function = 'c'
    derivative_order = 1
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    function = '0.1'
    args = c
    f_name = var_dep
    derivative_order = 1
  [../]
  [./mobility_tensor]
    type = ConstantAnisotropicMobility
    block = 0
    M_name = mobility_tensor
    tensor = '1 0 0 0 1 0 0 0 1'
  [../]
  [./mobility]
    type = CompositeMobilityTensor
    block = 0
    M_name = mobility_prop
    tensors = mobility_tensor
    weights = var_dep
    args = c
  [../]
[]

[BCs]
  [./leftc]
    type = DirichletBC
    variable = c
    boundary = left
    value = 0
  [../]
  [./rightc]
    type = DirichletBC
    variable = c
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_max_its = 5
  dt = 0.1
  num_steps = 20
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_scalar_to_auxscalar_transfer/from_sub/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[AuxVariables]
  [a]
    family = SCALAR
    order = SIXTH
  []
[]

[Variables]
  [dummy]
  []
[]

[Kernels]
  [dummy]
    type = Diffusion
    variable = dummy
  []
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[MultiApps]
  [sub]
    type = TransientMultiApp
    positions = '0 0 0'
    input_files = 'sub.i'
  []
[]

[Transfers]
  [from_sub]
    type = MultiAppScalarToAuxScalarTransfer
    multi_app = sub
    source_variable = 'b'
    to_aux_scalar = 'a'
    direction = from_multiapp
  []
[]

[Outputs]
    exodus = true
[]

modules/phase_field/test/tests/KKS_system/kks_xevac.i

#
# KKS toy problem in the split form
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  nz = 0
  xmin = -2.5
  xmax = 2.5
  ymin = -2.5
  ymax = 2.5
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[AuxVariables]
  [./Fglobal]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Variables]
  # gas concentration
  [./cg]
    order = FIRST
    family = LAGRANGE
  [../]

  # vac concentration
  [./cv]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./cv]
    variable = cv
    type = SmoothCircleIC
    x1 = -0.5
    y1 = 0.0
    radius = 1.5
    invalue = 0.9
    outvalue = 0.1
    int_width = 0.75
  [../]
  [./cg]
    variable = cg
    type = SmoothCircleIC
    x1 = 0.5
    y1 = 0.0
    radius = 1.5
    invalue = 0.7
    outvalue = 0.0
    int_width = 0.75
  [../]
[]


[BCs]
  [./Periodic]
    [./all]
      variable = 'cg cv'
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  # Free energy of the matrix
  [./fm]
    type = KKSXeVacSolidMaterial
    f_name = fm
    cmg = cg
    cmv = cv
    T = 300
    outputs = exodus
    derivative_order = 2
  [../]
[]

[Kernels]
  [./diff_g]
    type = Diffusion
    variable = cg
  [../]
  [./time_g]
    type = TimeDerivative
    variable = cg
  [../]

  [./diff_v]
    type = Diffusion
    variable = cv
  [../]
  [./time_v]
    type = TimeDerivative
    variable = cv
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  num_steps = 3
  dt = 0.1
  petsc_options_iname = '-pctype -sub_pc_type -sub_pc_factor_shift_type'
  petsc_options_value = ' asm    lu          nonzero'
[]

[Outputs]
  file_base = kks_xevac
  exodus = true
[]

test/tests/mesh/named_entities/periodic_bc_names_test.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  nz = 0
  xmax = 40
  ymax = 40
  zmax = 0
  elem_type = QUAD4
  # This test will not work in parallel with DistributedMesh enabled
  # due to a bug in PeriodicBCs.
  parallel_type = replicated
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff forcing dot'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./x]
      variable = u
      primary = 'left'
      secondary = 'right'
      translation = '40 0 0'
    [../]

    [./y]
      variable = u
      primary = 'bottom'
      secondary = 'top'
      translation = '0 40 0'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 20
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

test/tests/functions/hardcoded_piecewise_linear/hardcoded_piecewise_linear.i

# This test ensures that hardcoded_function returns the expected
# time-dependent values. The HardCodedPiecewiseLinearFunction is
# a test object whose purpose is to ensure that the setData() method
# can be used in Piecewise functions to directly set the xy data.
[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = 0
  xmax = 1
  nx = 1
  # This test uses an ElementalVariableValue postprocessor on a specific
  # element, so element numbering needs to stay unchanged
  allow_renumbering = false
[]

[Problem]
  solve = false
[]

[AuxVariables]
  [funcval]
  []
[]

[AuxKernels]
  [funcval]
    type = FunctionAux
    variable = funcval
    function = hardcoded_function
    execute_on = 'initial timestep_end'
  []
[]


[Functions]
  [hardcoded_function]
    type = HardCodedPiecewiseLinearFunction
  []
[]

[Postprocessors]
  [end1_pp]
    type = ElementalVariableValue
    variable = funcval
    elementid = 0
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.5
  end_time = 2
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = false
  csv = true
[]

test/tests/multiapps/reset/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub.i
    reset_apps = 0
    reset_time = 0.05
  [../]
[]

test/tests/kernels/ad_vector_couple/ad_vector_couple.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
[]

[Variables]
  [u]
    family = LAGRANGE
    order = FIRST
  []
  [v]
    family = LAGRANGE_VEC
    order = FIRST
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = ADDiffusion
    variable = u
  []
  [convection]
    type = ADCoupledVectorConvection
    variable = u
    velocity_vector = v
  []
  [diff_v]
    type = ADVectorDiffusion
    variable = v
  []
[]

[BCs]
  [left]
    type = ADFunctionDirichletBC
    variable = u
    function = 1
    boundary = 'left'
  []
  [right]
    type = ADFunctionDirichletBC
    variable = u
    function = 2
    boundary = 'bottom'
  []

  [left_v]
    type = ADVectorFunctionDirichletBC
    variable = v
    function_x = 1
    function_y = 2
    boundary = 'left'
  []
  [right_v]
    type = ADVectorFunctionDirichletBC
    variable = v
    function_x = 4
    function_y = 8
    boundary = 'top'
  []
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 10
  dt = 0.05
[]

[Outputs]
  execute_on = TIMESTEP_END
  exodus = true
[]

modules/richards/test/tests/gravity_head_2/ghQ2P_pgas.i

# quick two phase with Pgas and Swater being variables

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 20
  xmin = 0
  xmax = 1
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    y = '1E-2 1E-1 1E0 1E1 1E3 1E4 1E5 1E6 1E7'
    x = '0 1E-1 1E0 1E1 1E2 1E3 1E4 1E5 1E6'
  [../]
[]

[UserObjects]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0E2
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5E2
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./RelPermGas]
    type = Q2PRelPermPowerGas
    simm = 0.0
    n = 3
  [../]
[]

[Variables]
  [./pgas]
  [../]
  [./swater]
  [../]
[]

[ICs]
  [./pp_ic]
    type = ConstantIC
    value = 1
    variable = pgas
  [../]
  [./sat_ic]
    type = ConstantIC
    value = 0.5
    variable = swater
  [../]
[]

[Q2P]
  porepressure = pgas
  saturation = swater
  water_density = DensityWater
  water_relperm = RelPermWater
  water_viscosity = 1
  gas_density = DensityGas
  gas_relperm = RelPermGas
  gas_viscosity = 1
  diffusivity = 0
[]

[Postprocessors]
  [./pp_left]
    type = PointValue
    point = '0 0 0'
    variable = pgas
  [../]
  [./pp_right]
    type = PointValue
    point = '1 0 0'
    variable = pgas
  [../]

  [./sat_left]
    type = PointValue
    point = '0 0 0'
    variable = swater
  [../]
  [./sat_right]
    type = PointValue
    point = '1 0 0'
    variable = swater
  [../]
[]


[Materials]
  [./rock]
    type = Q2PMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    gravity = '-1 0 0'
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6

  [./TimeStepper]
    type = FunctionDT
    function = dts
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = ghQ2P_pgas
  csv = true
  exodus = true
[]

modules/tensor_mechanics/test/tests/weak_plane_shear/small_deform_harden4.i

# apply repeated stretches to observe cohesion hardening, with cubic
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = x_disp
    boundary = front
    function = '0'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = y_disp
    boundary = front
    function = '0'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = front
    function = '2*t'
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wps_internal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./wps_internal_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = wps_internal
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./int]
    type = PointValue
    point = '0 0 0'
    variable = wps_internal
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningCubic
    value_0 = 1E3
    value_residual = 2E3
    internal_limit = 0.00007
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.01745506
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 500
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 0.5E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-3
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 1E-6
  dt = 1E-7
  type = Transient
[]


[Outputs]
  file_base = small_deform_harden4
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

modules/stochastic_tools/test/tests/multiapps/sampler_full_solve_multiapp/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
    #    coef = 0.1
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/functional_expansion_tools/examples/3D_volumetric_cylindrical/main.i

# Basic example coupling a master and sub app in a 3D cylindrical mesh from an input file
#
# The master app provides field values to the sub app via Functional Expansions, which then performs
# its calculations. The sub app's solution field values are then transferred back to the master app
# and coupled into the solution of the master app solution.
#
# This example couples Functional Expansions via AuxVariable, the recommended approach.
#
# Note: this problem is not light, and may take a few minutes to solve.
[Mesh]
  type = FileMesh
  file = cyl-tet.e
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = HeatConduction
    variable = m
  [../]
  [./time_diff_m]
    type = HeatConductionTimeDerivative
    variable = m
  [../]
  [./s_in] # Add in the contribution from the SubApp
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[Materials]
  [./Unobtanium]
    type = GenericConstantMaterial
    prop_names =  'thermal_conductivity specific_heat density'
    prop_values = '1.0                  1.0           1.0' # W/(cm K), J/(g K), g/cm^3
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'top bottom outside'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = CylindricalDuo
    orders = '5   3' # Axial first, then (r, t) FX
    physical_bounds = '-2.5 2.5   0 0 1' # z_min z_max   x_center y_center radius
    z = Legendre # Axial in z
    disc = Zernike # (r, t) default to unit disc in x-y plane
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

test/tests/time_integrators/actually_explicit_euler_verification/ee-1d-linear.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -1
  xmax = 1
  nx = 200
  elem_type = EDGE2
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = x
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*x
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
    lumping = true
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    preset = false
    boundary = '0 1'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  start_time = 0.0
  num_steps = 20
  dt = 0.00005

  [./TimeIntegrator]
    type = ActuallyExplicitEuler
  [../]
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    max_rows = 10
  [../]
[]

test/tests/time_steppers/constant_dt/constant_dt.i

###########################################################
# This is a simple test with a time-dependent problem
# demonstrating the use of the TimeStepper system.
#
# @Requirement F1.20
###########################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  # Pluggable TimeStepper System
  [./TimeStepper]
    type = ConstantDT
    dt = 0.2
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/sliding_block/in_and_out/constraint/frictional_lm.i

[Mesh]
  patch_size = 80
  [file]
    type = FileMeshGenerator
    file = sliding_elastic_blocks_2d.e
  []
  [slave]
    input = file
    type = LowerDBlockFromSidesetGenerator
    sidesets = '3'
    new_block_id = '30'
  []
  [master]
    input = slave
    type = LowerDBlockFromSidesetGenerator
    sidesets = '2'
    new_block_id = '20'
  []
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [normal_lm]
    block = '30'
  []
  [tangential_lm]
    block = '30'
    family = MONOMIAL
    order = CONSTANT
  []
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = horizontal_movement
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
    block = '1 2'
  [../]
[]

[Materials]
  [./tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -snes_ksp_ew'
  petsc_options_iname = '-pc_type -mat_mffd_err -pc_factor_shift_type -pc_factor_shift_amount'
  petsc_options_value = 'lu       1e-5          NONZERO               1e-15'
  end_time = 15
  dt = 0.1
  dtmin = 0.01
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
  timestep_tolerance = 1e-6

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  sync_times = '1 2 3 4 5 6 7 8 9 10 11 12 13 14 15'
  [out]
    type = Exodus
    sync_only = true
  []
  [dof]
    execute_on = 'initial'
    type = DOFMap
  []
  [csv]
    type = CSV
    execute_on = 'nonlinear timestep_end'
  []
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
  [./horizontal_movement]
    type = ParsedFunction
    value = -0.04*sin(4*t)+0.02
  [../]
[]

[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = 3
    master = 2
    variable = normal_lm
    master_variable = disp_x
    disp_y = disp_y
    ncp_function_type = min
    use_displaced_mesh = true
    c = 1e6 # relative scale difference between pressure and gap
  [../]
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '3'
    master_subdomain = '20'
    slave_subdomain = '30'
    variable = normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '3'
    master_subdomain = '20'
    slave_subdomain = '30'
    variable = normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [tangential_lm]
    type = TangentialMortarLMMechanicalContact
    master_boundary = '2'
    slave_boundary = '3'
    master_subdomain = '20'
    slave_subdomain = '30'
    variable = tangential_lm
    slave_variable = disp_x
    slave_disp_y = disp_y
    use_displaced_mesh = true
    compute_primal_residuals = false
    contact_pressure = normal_lm
    friction_coefficient = .4
    ncp_function_type = fb
    c = 1000 # relative scale difference between pressure and velocity
  []
  [tangential_x]
    type = TangentialMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '3'
    master_subdomain = '20'
    slave_subdomain = '30'
    variable = tangential_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [tangential_y]
    type = TangentialMortarMechanicalContact
    master_boundary = '2'
    slave_boundary = '3'
    master_subdomain = '20'
    slave_subdomain = '30'
    variable = tangential_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [lin]
    type = NumLinearIterations
  []
  [cum_lin]
    type = CumulativeValuePostprocessor
    postprocessor = lin
  []
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '30'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/combined/test/tests/cavity_pressure/3d.i

#
# Cavity Pressure Test
#
# This test is designed to compute an internal pressure based on
#   p = n * R * T / V
# where
#   p is the pressure
#   n is the amount of material in the volume (moles)
#   R is the universal gas constant
#   T is the temperature
#   V is the volume
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total
#   initial volume is 7.
# The test adjusts n, T, and V in the following way:
#   n => n0 + alpha * t
#   T => T0 + beta * t
#   V => V0 + gamma * t
# with
#   alpha = n0
#   beta = T0 / 2
#   gamma = - (0.003322259...) * V0
#   T0 = 240.54443866068704
#   V0 = 7
#   n0 = f(p0)
#   p0 = 100
#   R = 8.314472 J * K^(-1) * mol^(-1)
#
# So, n0 = p0 * V0 / R / T0 = 100 * 7 / 8.314472 / 240.544439
#        = 0.35
#
# The parameters combined at t = 1 gives p = 301.
#

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = 3d.e
[]

[Functions]
  [./displ_positive]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.0029069767441859684'
  [../]
  [./displ_negative]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 -0.0029069767441859684'
  [../]
  [./temp1]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1.5'
    scale_factor = 240.54443866068704
  [../]
  [./material_input_function]
    type = PiecewiseLinear
    x = '0    1'
    y = '0 0.35'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 240.54443866068704
  [../]
  [./material_input]
  [../]
[]

[AuxVariables]
  [./pressure_residual_x]
  [../]
  [./pressure_residual_y]
  [../]
  [./pressure_residual_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
  [./heat]
    type = Diffusion
    variable = temp
    use_displaced_mesh = true
  [../]
  [./material_input_dummy]
    type = Diffusion
    variable = material_input
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_xx
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_yy
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_zz
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
    variable = stress_xy
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 2
    variable = stress_yz
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 0
    variable = stress_zx
  [../]
[]

[BCs]
  [./no_x_exterior]
    type = DirichletBC
    variable = disp_x
    boundary = '7 8'
    value = 0.0
  [../]
  [./no_y_exterior]
    type = DirichletBC
    variable = disp_y
    boundary = '9 10'
    value = 0.0
  [../]
  [./no_z_exterior]
    type = DirichletBC
    variable = disp_z
    boundary = '11 12'
    value = 0.0
  [../]
  [./prescribed_left]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 13
    function = displ_positive
  [../]
  [./prescribed_right]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 14
    function = displ_negative
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '15 16'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '17 18'
    value = 0.0
  [../]
  [./no_x_interior]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]
  [./no_y_interior]
    type = DirichletBC
    variable = disp_y
    boundary = '3 4'
    value = 0.0
  [../]
  [./no_z_interior]
    type = DirichletBC
    variable = disp_z
    boundary = '5 6'
    value = 0.0
  [../]
  [./temperatureInterior]
    type = FunctionDirichletBC
    boundary = 100
    function = temp1
    variable = temp
  [../]
  [./MaterialInput]
    type = FunctionDirichletBC
    boundary = '100 13 14 15 16'
    function = material_input_function
    variable = material_input
  [../]
  [./CavityPressure]
    [./1]
      boundary = 100
      initial_pressure = 100
      material_input = materialInput
      R = 8.314472
      temperature = aveTempInterior
      volume = internalVolume
      startup_time = 0.5
      output = ppress
      save_in = 'pressure_residual_x pressure_residual_y pressure_residual_z'
    [../]
  [../]
[]

[Materials]
  [./elast_tensor1]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e1
    poissons_ratio = 0
    block = 1
  [../]
  [./strain1]
    type = ComputeFiniteStrain
    block = 1
  [../]
  [./stress1]
    type = ComputeFiniteStrainElasticStress
    block = 1
  [../]
  [./elast_tensor2]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0
    block = 2
  [../]
  [./strain2]
    type = ComputeFiniteStrain
    block = 2
  [../]
  [./stress2]
    type = ComputeFiniteStrainElasticStress
    block = 2
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  nl_rel_tol = 1e-12
  l_tol = 1e-12

  l_max_its = 20

  dt = 0.5
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 100
    execute_on = 'initial linear'
  [../]
  [./aveTempInterior]
    type = SideAverageValue
    boundary = 100
    variable = temp
    execute_on = 'initial linear'
  [../]
  [./materialInput]
    type = SideAverageValue
    boundary = '7 8 9 10 11 12'
    variable = material_input
    execute_on = linear
  [../]
[]

[Outputs]
  exodus = true
[]

modules/stochastic_tools/test/tests/transfers/sampler_transfer_vector/master.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
  ny = 1
[]

[Variables]
  [u]
  []
[]

[Distributions]
  [uniform_left]
    type = UniformDistribution
    lower_bound = 1
    upper_bound = 2
  []
  [uniform_right]
    type = UniformDistribution
    lower_bound = 10
    upper_bound = 20
  []
  [uniform_prop_a]
    type = UniformDistribution
    lower_bound = 1980
    upper_bound = 1981
  []
  [uniform_prop_b]
    type = UniformDistribution
    lower_bound = 1949
    upper_bound = 1950
  []
[]

[Samplers]
  [sample]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform_left uniform_prop_a uniform_prop_b uniform_right'
    execute_on = 'initial timestep_end' # create new random numbers on initial and timestep_end
  []
[]

[MultiApps]
  [sub]
    type = SamplerTransientMultiApp
    input_files = sub.i
    sampler = sample
    execute_on = 'initial timestep_end'
  []
[]

[Transfers]
  [sub]
    type = SamplerParameterTransfer
    multi_app = sub
    sampler = sample
    parameters = 'BCs/left/value Materials/mat/prop_values BCs/right/value'
    to_control = 'stochastic'
    execute_on = 'initial timestep_end'
    check_multiapp_execute_on = false
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Outputs]
  execute_on = 'initial timestep_end'
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform18.i

# Using CappedMohrCoulomb with compressive failure only
# A single unit element is stretched by -1E-6m in z direction.
# with Lame lambda = 0.6E6 and Lame mu (shear) = 1E6
# stress_zz = -2.6 Pa
# stress_xx = -0.6 Pa
# stress_yy = -0.6 Pa
# compressive_strength is set to 0.5Pa
#
# stress_zz = -0.5
# plastic multiplier = 2.1/2.6 E-6
# stress_xx = -0.6 - (2.1/2.6*-0.6) = -0.115
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-1.0E-6*z'
  [../]
[]

[AuxVariables]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f0_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./intnl_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./intnl]
    type = PointValue
    point = '0 0 0'
    variable = intnl
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0.6E6 1E6'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.0
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform18
  csv = true
[]

modules/xfem/test/tests/solid_mechanics_basic/sm/square_branch_tri_2d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  elem_type = TRI3
  displacements = 'disp_x disp_y'
[]

[UserObjects]
  [./line_seg_cut_uo0]
    type = LineSegmentCutUserObject
    cut_data = '-1.0000e-10   6.6340e-01   6.6340e-01  -1.0000e-10'
    time_start_cut = 0.0
    time_end_cut = 1.0
  [../]
  [./line_seg_cut_uo1]
    type = LineSegmentCutUserObject
    cut_data = '3.3120e-01   3.3200e-01   1.0001e+00   3.3200e-01'
    time_start_cut = 1.0
    time_end_cut = 2.0
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./right_disp_x]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
  [./top_disp_y]
    type = PiecewiseLinear
    x = '0  1.0    2.0   3.0'
    y = '0  0.005  0.01  0.01'
  [../]
[]

[BCs]
  [./right_x]
    type = FunctionDirichletBC
    boundary = 1
    variable = disp_x
    function = right_disp_x
  [../]
  [./top_y]
    type = FunctionDirichletBC
    boundary = 2
    variable = disp_y
    function = top_disp_y
  [../]
  [./bottom_y]
    type = DirichletBC
    boundary = 0
    variable = disp_y
    value = 0.0
  [../]
  [./left_x]
    type = DirichletBC
    boundary = 3
    variable = disp_x
    value = 0.0
  [../]
[]

[Materials]
  [./linelast]
    type = LinearIsotropicMaterial
    block = 0
    disp_x = disp_x
    disp_y = disp_y
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      8'

  line_search = 'none'

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-2

# controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-16
  nl_abs_tol = 1e-10

# time control
  start_time = 0.0
  dt = 1.0
  end_time = 2.2
  num_steps = 5000
[]

[Outputs]
  file_base = square_branch_tri_2d_out
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

test/tests/multiapps/transient_multiapp/dt_from_multi_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/materials/stateful_prop/many_stateful_props.i

# This test creates several unused stateful properties.
# It's here to make sure that we don't consume too much
# memory if we store them all. With 180x180 elements
# we were previously seeing nearly a Gigabyte of memory
# consumed using TBB's map. We are now using unordered
# map which saves us 6x to 8x on memory.

[Mesh]
  type = GeneratedMesh
  nx = 10 #180
  ny = 10 #180
  dim = 2
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./prop1]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = MatDiffusionTest
    variable = u
    prop_name = thermal_conductivity
    prop_state = 'old'                  # Use the "Old" value to compute conductivity
  [../]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./prop1_output]
    type = MaterialRealAux
    variable = prop1
    property = thermal_conductivity
  [../]

  [./prop1_output_init]
    type = MaterialRealAux
    variable = prop1
    property = thermal_conductivity
    execute_on = initial
  [../]
[]

[BCs]
  [./bottom]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0.0
  [../]
  [./top]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1.0
  [../]
[]

[Materials]
  [./stateful1]
    type = StatefulTest
    prop_names = 'thermal_conductivity'
    prop_values = '1'
  [../]
  [./stateful2]
    type = StatefulTest
    prop_names = 'foo2'
    prop_values = '2'
  [../]
  [./stateful3]
    type = StatefulTest
    prop_names = 'foo3'
    prop_values = '3'
  [../]
  [./stateful4]
    type = StatefulTest
    prop_names = 'foo4'
    prop_values = '4'
  [../]
  [./stateful5]
    type = StatefulTest
    prop_names = 'foo5'
    prop_values = '5'
  [../]
  [./stateful6]
    type = StatefulTest
    prop_names = 'foo6'
    prop_values = '6'
  [../]
[]

[Postprocessors]
  [./integral]
    type = ElementAverageValue
    variable = prop1
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  l_max_its = 10
  start_time = 0.0
  num_steps = 1
  dt = .1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/2D_geometries/2D-RZ_finiteStrain_test.i

# Considers the mechanics solution for a thick spherical shell that is uniformly
# pressurized on the inner and outer surfaces, using 2D axisymmetric geometry.
# This test uses the strain calculator ComputeAxisymmetricRZFiniteStrain,
# which is generated through the use of the TensorMechanics MasterAction.
#
# From Roark (Formulas for Stress and Strain, McGraw-Hill, 1975), the radially-dependent
# circumferential stress in a uniformly pressurized thick spherical shell is given by:
#
# S(r) = [ Pi[ri^3(2r^3+ro^3)] - Po[ro^3(2r^3+ri^3)] ] / [2r^3(ro^3-ri^3)]
#
#   where:
#          Pi = inner pressure
#          Po = outer pressure
#          ri = inner radius
#          ro = outer radius
#
# The tests assume an inner and outer radii of 5 and 10, with internal and external
# pressures of 100000 and 200000 at t = 1.0, respectively. The resulting compressive
# tangential stress is largest at the inner wall and, from the above equation, has a
# value of -271429.
#
# RESULTS are below. Since stresses are average element values, values for the
# edge element and one-element-in are used to extrapolate the stress to the
# inner surface. The vesrion of the tests that are checked use the coarsest meshes.
#
#  Mesh    Radial elem   S(edge elem)  S(one elem in)  S(extrap to surf)
# 1D-SPH
# 2D-RZ        12 (x10)    -265004      -254665        -270174
#  3D          12 (6x6)    -261880      -252811        -266415
#
# 1D-SPH
# 2D-RZ        48 (x10)    -269853      -266710        -271425
#  3D          48 (10x10)  -268522      -265653        -269957
#
# The numerical solution converges to the analytical solution as the mesh is
# refined.

[Mesh]
  file = 2D-RZ_mesh.e
[]

[GlobalParams]
  displacements = 'disp_r disp_z'
[]

[Problem]
  coord_type = RZ
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    block = 1
  [../]
[]

[AuxVariables]
  [./stress_theta]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_theta]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_theta]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_theta
    execute_on = timestep_end
  [../]
  [./strain_theta]
    type = RankTwoAux
    rank_two_tensor = total_strain
    index_i = 2
    index_j = 2
    variable = strain_theta
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e10
    poissons_ratio = 0.345
    block = 1
  [../]

  [./_elastic_strain]
    type = ComputeFiniteStrainElasticStress
    block = 1
  [../]
[]

[BCs]
# pin particle along symmetry planes
  [./no_disp_r]
    type = DirichletBC
    variable = disp_r
    boundary = xzero
    value = 0.0
  [../]

  [./no_disp_z]
    type = DirichletBC
    variable = disp_z
    boundary = yzero
    value = 0.0
  [../]

# exterior and internal pressures
  [./exterior_pressure_r]
    type = Pressure
    variable = disp_r
    boundary = outer
    component = 0
    function = '200000*t'
  [../]

 [./exterior_pressure_z]
    type = Pressure
    variable = disp_z
    boundary = outer
    component = 1
    function = '200000*t'
  [../]

  [./interior_pressure_r]
    type = Pressure
    variable = disp_r
    boundary = inner
    component = 0
    function = '100000*t'
  [../]

  [./interior_pressure_z]
    type = Pressure
    variable = disp_z
    boundary = inner
    component = 1
    function = '100000*t'
  [../]
[]

[Debug]
    show_var_residual_norms = true
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '  201               hypre    boomeramg      10'

  line_search = 'none'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  nl_rel_tol = 5e-9
  nl_abs_tol = 1e-10
  nl_max_its = 15

  l_tol = 1e-3
  l_max_its = 50

  start_time = 0.0
  end_time = 0.2
  dt = 0.1
[]

[Postprocessors]
  [./strainTheta]
    type = ElementAverageValue
    variable = strain_theta
  [../]
  [./stressTheta]
    type = ElementAverageValue
    variable = stress_theta
  [../]
  [./stressTheta_pt]
    type = PointValue
    point = '5.0 0.0 0.0'
    #bottom inside edge for comparison to theory; use csv = true
    variable = stress_theta
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/meshgenerators/subdomain_bounding_box_generator/subdomain_bounding_box_generator_outside.i

[Mesh]
  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 10
    xmax = 1
    ymax = 1
    #uniform_refine = 2
  []

  [./subdomains]
    type = SubdomainBoundingBoxGenerator
    input = gmg
    bottom_left = '0.1 0.1 0'
    block_id = 1
    top_right = '0.9 0.9 0'
    location = OUTSIDE
  []
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = MatCoefDiffusion
    variable = u
    conductivity = 'k'
    block = '0 1'
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Materials]
  [./outside]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'k'
    prop_values = 1
  [../]
  [./inside]
    type = GenericConstantMaterial
    block = 1
    prop_names = 'k'
    prop_values = 0.1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/small_deform6.i

# Plastic deformation, both tensile and shear failure
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz plastic_strain_xx plastic_strain_xy plastic_strain_xz plastic_strain_yy plastic_strain_yz plastic_strain_zz strain_xx strain_xy strain_xz strain_yy strain_yz strain_zz'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = front
    function = 'if(t<30,0.2*t,6)'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = front
    function = 'if(t<30,if(t<10,0,t),30-0.2*t)'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = 'if(t<15,3*t,45)+if(t<30,0,45-3*t)'
  [../]
[]

[AuxVariables]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./stress_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./stress_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./stress_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./stress_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./stress_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./strainp_xx]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xx
  [../]
  [./strainp_xy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xy
  [../]
  [./strainp_xz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_xz
  [../]
  [./strainp_yy]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yy
  [../]
  [./strainp_yz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_yz
  [../]
  [./strainp_zz]
    type = PointValue
    point = '0 0 0'
    variable = plastic_strain_zz
  [../]
  [./straint_xx]
    type = PointValue
    point = '0 0 0'
    variable = strain_xx
  [../]
  [./straint_xy]
    type = PointValue
    point = '0 0 0'
    variable = strain_xy
  [../]
  [./straint_xz]
    type = PointValue
    point = '0 0 0'
    variable = strain_xz
  [../]
  [./straint_yy]
    type = PointValue
    point = '0 0 0'
    variable = strain_yy
  [../]
  [./straint_yz]
    type = PointValue
    point = '0 0 0'
    variable = strain_yz
  [../]
  [./straint_zz]
    type = PointValue
    point = '0 0 0'
    variable = strain_zz
  [../]
  [./f_shear]
    type = PointValue
    point = '0 0 0'
    variable = f_shear
  [../]
  [./f_tensile]
    type = PointValue
    point = '0 0 0'
    variable = f_tensile
  [../]
  [./f_compressive]
    type = PointValue
    point = '0 0 0'
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = PointValue
    point = '0 0 0'
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = PointValue
    point = '0 0 0'
    variable = intnl_tensile
  [../]
  [./iter]
    type = PointValue
    point = '0 0 0'
    variable = iter
  [../]
  [./ls]
    type = PointValue
    point = '0 0 0'
    variable = ls
  [../]
[]


[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 20
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.1
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 20
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '4 4'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    max_NR_iterations = 20
    tip_smoother = 5
    smoothing_tol = 5
    yield_function_tol = 1E-10
    perfect_guess = false
  [../]
[]

[Executioner]
  end_time = 40
  dt = 1
  type = Transient
[]

[Outputs]
  file_base = small_deform6
  csv = true
[]

modules/tensor_mechanics/test/tests/finite_strain_elastic/finite_strain_elastic_eigen_sol.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  elem_type = HEX8
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./tdisp]
    type = ParsedFunction
    value = '0.01 * t'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    decomposition_method = EigenSolution
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./tdisp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = tdisp
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '1.684e5 0.176e5 0.176e5 1.684e5 0.176e5 1.684e5 0.754e5 0.754e5 0.754e5'
    fill_method = symmetric9
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = -pc_hypre_type
  petsc_options_value = boomeramg

  nl_abs_tol = 1e-10
  nl_rel_step_tol = 1e-10
  nl_rel_tol = 1e-10

  dt = 0.05
  dtmin = 0.05
  nl_abs_step_tol = 1e-10

  num_steps = 10
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/DiffuseCreep/stress.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 2
  xmin = 0
  xmax = 10
  ymin = 0
  ymax = 2
[]

[Variables]
  [./c]
    [./InitialCondition]
      type = FunctionIC
      function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);0.1+0.1*v'
    [../]
  [../]
  [./mu]
  [../]
  [./jx]
  [../]
  [./jy]
  [../]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./gb]
    family = LAGRANGE
    order  = FIRST
  [../]
  [./creep_strain_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./creep_strain_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./creep_strain_xy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./stress_xx]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order  = CONSTANT
  [../]
[]

[Kernels]
  [./conc]
    type = CHSplitConcentration
    variable = c
    mobility = mobility_prop
    chemical_potential_var = mu
  [../]
  [./chempot]
    type = CHSplitChemicalPotential
    variable = mu
    chemical_potential_prop = mu_prop
    c = c
  [../]
  [./flux_x]
    type = CHSplitFlux
    variable = jx
    component = 0
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./flux_y]
    type = CHSplitFlux
    variable = jy
    component = 1
    mobility_name = mobility_prop
    mu = mu
    c = c
  [../]
  [./time]
    type = TimeDerivative
    variable = c
  [../]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
  [../]
[]

[AuxKernels]
  [./gb]
    type = FunctionAux
    variable = gb
    function = 'x0:=5.0;thk:=0.5;m:=2;r:=abs(x-x0);v:=exp(-(r/thk)^m);v'
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    variable = creep_strain_xx
    rank_two_tensor = creep_strain
    index_i = 0
    index_j = 0
  [../]
  [./creep_strain_yy]
    type = RankTwoAux
    variable = creep_strain_yy
    rank_two_tensor = creep_strain
    index_i = 1
    index_j = 1
  [../]
  [./creep_strain_xy]
    type = RankTwoAux
    variable = creep_strain_xy
    rank_two_tensor = creep_strain
    index_i = 0
    index_j = 1
  [../]
  [./stress_xx]
    type = RankTwoAux
    variable = stress_xx
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    variable = stress_yy
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
  [../]
  [./stress_xy]
    type = RankTwoAux
    variable = stress_xy
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
  [../]
[]

[Materials]
  [./chemical_potential]
    type = DerivativeParsedMaterial
    block = 0
    f_name = mu_prop
    args = c
    function = 'c'
    derivative_order = 1
  [../]
  [./var_dependence]
    type = DerivativeParsedMaterial
    block = 0
    function = 'c*(1.0-c)'
    args = c
    f_name = var_dep
    derivative_order = 1
  [../]
  [./mobility]
    type = CompositeMobilityTensor
    block = 0
    M_name = mobility_prop
    tensors = diffusivity
    weights = var_dep
    args = c
  [../]
  [./phase_normal]
    type = PhaseNormalTensor
    phase = gb
    normal_tensor_name = gb_normal
  [../]
  [./aniso_tensor]
    type = GBDependentAnisotropicTensor
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = aniso_tensor
  [../]
  [./diffusivity]
    type = GBDependentDiffusivity
    gb = gb
    bulk_parameter = 0.1
    gb_parameter = 1
    gb_normal_tensor_name = gb_normal
    gb_tensor_prop_name = diffusivity
  [../]
  [./diffuse_strain_increment]
    type = FluxBasedStrainIncrement
    xflux = jx
    yflux = jy
    gb = gb
    property_name = diffuse
  [../]
  [./diffuse_creep_strain]
    type = SumTensorIncrements
    tensor_name = creep_strain
    coupled_tensor_increment_names = diffuse
  [../]
  [./strain]
   type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y'
  [../]
  [./stress]
    type = ComputeStrainIncrementBasedStress
    inelastic_strain_names = creep_strain
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
  [../]
[]

[BCs]
  [./Periodic]
    [./cbc]
      auto_direction = 'x y'
      variable = c
    [../]
  [../]
  [./fix_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_grmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  preonly       lu           1'

  nl_rel_tol = 1e-10
  nl_max_its = 5

  l_tol = 1e-4
  l_max_its = 20

  dt = 1
  num_steps = 5
[]

[Preconditioning]
  [./smp]
     type = SMP
     full = true
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/jacobian/basic_advection1.i

# Basic advection with no PorousFlow variables
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./P]
  [../]
[]

[ICs]
  [./P]
    type = FunctionIC
    variable = P
    function = '2*(1-x)'
  [../]
  [./u]
    type = RandomIC
    variable = u
  [../]
[]

[Kernels]
  [./u_advection]
    type = PorousFlowBasicAdvection
    variable = u
    phase = 0
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = ''
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 4
      thermal_expansion = 0
      viscosity = 150.0
    [../]
  [../]
[]

[Materials]
  [./temperature_qp]
    type = PorousFlowTemperature
  [../]
  [./ppss_qp]
    type = PorousFlow1PhaseP
    porepressure = P
    capillary_pressure = pc
  [../]
  [./simple_fluid_qp]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '5 0 0 0 5 0 0 0 5'
  [../]
  [./relperm_qp]
    type = PorousFlowRelativePermeabilityCorey
    n = 0
    phase = 0
  [../]
  [./darcy_velocity_qp]
    type = PorousFlowDarcyVelocityMaterial
    gravity = '0.25 0 0'
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    #petsc_options = '-snes_test_display'
    petsc_options_iname = '-snes_type'
    petsc_options_value = ' test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

test/tests/nodalkernels/constraint_enforcement/vi-bounding.i

l=10
nx=100
num_steps=10

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmax = ${l}
  nx = ${nx}
[]

[Variables]
  [u]
  []
[]

[AuxVariables]
  [bounds][]
[]

[Bounds]
  [bounds]
    type = BoundsAux
    variable = bounds
    bounded_variable = u
    upper = ${l}
    lower = 0
  []
[]

[ICs]
  [u]
    type = FunctionIC
    variable = u
    function = 'x'
  []
[]

[Kernels]
  [time]
    type = TimeDerivative
    variable = u
  []
  [diff]
    type = Diffusion
    variable = u
  []
  [ffn]
    type = BodyForce
    variable = u
    function = 'if(x<5,-1,1)'
  []
[]

[BCs]
  [left]
    type = DirichletBC
    boundary = left
    value = 0
    variable = u
  []
  [right]
    type = DirichletBC
    boundary = right
    value = ${l}
    variable = u
  []
[]

[Preconditioning]
  [smp]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  num_steps = ${num_steps}
  solve_type = NEWTON
  dtmin = 1
  petsc_options_iname = '-snes_max_linear_solve_fail -ksp_max_it -pc_type -sub_pc_factor_levels -snes_linesearch_type -snes_type'
  petsc_options_value = '0                           30          asm      16                    basic                 vinewtonrsls'
[]

[Outputs]
  exodus = true
  [csv]
    type = CSV
    execute_on = 'nonlinear timestep_end'
  []
  [dof]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Debug]
  show_var_residual_norms = true
[]

[Postprocessors]
  [upper_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = ${fparse 10+1e-8}
    comparator = 'greater'
  []
  [lower_violations]
    type = GreaterThanLessThanPostprocessor
    variable = u
    execute_on = 'nonlinear timestep_end'
    value = -1e-8
    comparator = 'less'
  []
  [nls]
    type = NumNonlinearIterations
  []
  [cum_nls]
    type = CumulativeValuePostprocessor
    postprocessor = nls
  []
[]

modules/combined/test/tests/elastic_thermal_patch/elastic_thermal_weak_plane_stress_jacobian.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  temperature = temp
  out_of_plane_strain = strain_zz
  thermal_eigenstrain_name = thermal_eigenstrain
[]

[Mesh]
  file = square.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./strain_zz]
  [../]

  [./temp]
  [../]
[]

[Kernels]
  [./disp_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./disp_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]

  [./solid_z]
    type = WeakPlaneStress
    variable = strain_zz
  [../]

  [./heat]
    type = HeatConduction
    variable = temp
    use_displaced_mesh = false
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.0
    youngs_modulus = 1
  [../]
  [./strain]
    type = ComputePlaneSmallStrain
    eigenstrain_names = thermal_eigenstrain
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 1e-5
    stress_free_temperature = 0
    eigenstrain_name = thermal_eigenstrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]

  [./conductivity]
    type = HeatConductionMaterial
    thermal_conductivity = 1
    use_displaced_mesh = false
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  petsc_options_iname = '-ksp_type -pc_type -snes_type'
  petsc_options_value = 'bcgs bjacobi test'

  end_time = 1.0
[]

test/tests/functions/piecewise_constant/piecewise_constant.i

# This tests the PiecewiseConstant function.
# There are four variables and four functions: a,b,c, and d.  The diffusion equation is "solved"
# for each of these variables with a boundary condition of type FunctionDirchletBC applied to a boundary
# (i.e. node set) that includes every node in the element, so the solution is the boundary condition defined by the function.
#  Each boundary condition uses a function of type PiecewiseConstant.
#
# The value of the variables should correspond to the function.

[Mesh]
  file = cube.e
  # This problem only has 1 element, so using DistributedMesh in parallel
  # isn't really an option, and we don't care that much about DistributedMesh
  # in serial.
  parallel_type = replicated
[]

[Variables]

  [./aVar]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.1
  [../]
  [./bVar]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.1
  [../]
  [./cVar]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.1
  [../]
  [./dVar]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.1
  [../]
[]

[Functions]
  [./a]
    type = PiecewiseConstant
    xy_data = '0.5 0.1
               1.0 0.2
               1.5 0.1'
    direction = left
  [../]
  [./b]
    type = PiecewiseConstant
    x = '0.5 1.0 1.5'
    y = '0.1 0.2 0.1'
    direction = right
  [../]
  [./c]
    type = PiecewiseConstant
    data_file = pc.csv
    direction = left
    format = columns
  [../]
  [./d]
    type = PiecewiseConstant
    data_file = pc.csv
    direction = right
    format = columns
  [../]
[]

[Kernels]
  [./diffa]
    type = Diffusion
    variable = aVar
  [../]
  [./diffb]
    type = Diffusion
    variable = bVar
  [../]
  [./diffc]
    type = Diffusion
    variable = cVar
  [../]
  [./diffd]
    type = Diffusion
    variable = dVar
  [../]
[]

[BCs]
  [./a]
    type = FunctionDirichletBC
    variable = aVar
    boundary = '1'
    function = a
  [../]
  [./b]
    type = FunctionDirichletBC
    variable = bVar
    boundary = '1'
    function = b
  [../]
  [./c]
    type = FunctionDirichletBC
    variable = cVar
    boundary = '1'
    function = c
  [../]
  [./d]
    type = FunctionDirichletBC
    variable = dVar
    boundary = '1'
    function = d
  [../]
[]

[Executioner]
  type = Transient
  dt = 0.2
  end_time = 3
  nl_rel_tol = 1e-12
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/smeared_cracking/cracking_exponential_deprecated.i

#
# Test to exercise the exponential stress release
#
# Stress vs. strain should show a linear relationship until cracking,
#   an exponential stress release, a linear relationship back to zero
#   strain, a linear relationship with the original stiffness in
#   compression and then back to zero strain, a linear relationship
#   back to the exponential curve, and finally further exponential
#   stress release.
#

[Mesh]
  file = cracking_test.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Functions]
  [./displx]
    type = PiecewiseLinear
    x = '0 1       2  3      4 5       6'
    y = '0 0.00175 0 -0.0001 0 0.00175 0.0035'
  [../]
  [./disply]
    type = PiecewiseLinear
    x = '0 5 6'
    y = '0 0 .00175'
  [../]
  [./displz]
    type = PiecewiseLinear
    x = '0 2 3'
    y = '0 0 .0035'
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    generate_output = 'stress_xx stress_yy stress_zz stress_xy stress_yz stress_zx'
  [../]
[]

[BCs]
  [./pullx]
    type = FunctionDirichletBC
    #type = FunctionDirichletBC
    variable = disp_x
    boundary = 4
    function = displx
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]

  [./fix_y]
    type = DirichletBC
    variable = disp_y
    boundary = '11 12'
    value = 0.0
  [../]

  [./move_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = '15 16'
    function = disply
  [../]

  [./back]
    type = DirichletBC
    variable = disp_z
    boundary = '3'
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 186.5e9
    poissons_ratio = .316
  [../]
  [./elastic_stress]
    type = ComputeSmearedCrackingStress
    cracking_stress = 119.3e6
    cracking_release = exponential
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-ksp_gmres_restart -pc_type'
  petsc_options_value = '101                lu'

  line_search = 'none'
  l_max_its = 100
  l_tol = 1e-6

  nl_max_its = 10
  nl_rel_tol = 1e-12
  nl_abs_tol = 1.e-4

  start_time = 0.0
  dt = 0.02
  dtmin = 0.02
  num_steps = 300
[]

[Outputs]
  exodus = true
  file_base = cracking_exponential_out
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/frictionless_kinematic_sm.i

[Mesh]
  file = blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e7
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    system = Constraint
    master = 2
    slave = 3
    model = frictionless
    penalty = 1e+6
  [../]
[]

modules/tensor_mechanics/test/tests/generalized_plane_strain/plane_strain.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  block = 1
[]

[Mesh]
  file = square.e
[]

[AuxVariables]
  [./temp]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    use_displaced_mesh = false
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-x)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 1
    variable = disp_x
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 1
    variable = disp_y
    value = 0.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = SMALL
    add_variables = true
    temperature = temp
    generate_output = 'stress_xx stress_xy stress_yy stress_zz strain_xx strain_xy strain_yy strain_zz'
    planar_formulation = PLANE_STRAIN
    eigenstrain_names = eigenstrain
    save_in = 'saved_x saved_y'
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeLinearElasticStress
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 0.02
    temperature = temp
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
[]

[Postprocessors]
  [./react_z]
    type = MaterialTensorIntegral
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

  # controls for linear iterations
  l_max_its = 100
  l_tol = 1e-8

  # controls for nonlinear iterations
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-12

  # time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  exodus = true
[]

test/tests/geomsearch/3d_moving_penetration_smoothing/pl_test3nstt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3tt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
#  [./element_id]
#  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.09
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.09
    normal_smoothing_distance = 0.2
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

#  [./penetrate17]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 11
#    paired_boundary = 12
#    quantity = element_id
#  [../]
#
#  [./penetrate18]
#    type = PenetrationAux
#    variable = element_id
#    boundary = 12
#    paired_boundary = 11
#    quantity = element_id
#  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test3nstt_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small_added_mass_inertia_damping.i

# Test for small strain euler beam vibration in y direction

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The beam is massless with a lumped mass at the end of the beam. The lumped
# mass also has a moment of inertia associated with it.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 1e4
# Shear modulus (G) = 4e7
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 0.01
# Iy = 1e-4 = Iz
# Length (L)= 4 m
# mass (m) = 0.01899772
# Moment of inertia of lumped mass:
# Ixx = 0.2
# Iyy = 0.1
# Izz = 0.1
# mass proportional damping coefficient (eta) = 0.1

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 6.4e6
# Therefore, the beam behaves like a Euler-Bernoulli beam.

# The displacement time history from this analysis matches with that obtained from Abaqus.

# Values from the first few time steps are as follows:
# time   disp_y              vel_y               accel_y
# 0.0    0.0                 0.0                 0.0
# 0.1    0.001278249649738   0.025564992994761   0.51129985989521
# 0.2    0.0049813090917644  0.048496195845768  -0.052675802875074
# 0.3    0.0094704658873002  0.041286940064947  -0.091509312741339
# 0.4    0.013082280729802   0.03094935678508   -0.115242352856
# 0.5    0.015588313103503   0.019171290688959  -0.12031896906642

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0.0
  xmax = 4.0
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./rot_accel_x]
    type = NewmarkAccelAux
    variable = rot_accel_x
    displacement = rot_x
    velocity = rot_vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./rot_vel_x]
    type = NewmarkVelAux
    variable = rot_vel_x
    acceleration = rot_accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./rot_accel_y]
    type = NewmarkAccelAux
    variable = rot_accel_y
    displacement = rot_y
    velocity = rot_vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./rot_vel_y]
    type = NewmarkVelAux
    variable = rot_vel_y
    acceleration = rot_accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./rot_accel_z]
    type = NewmarkAccelAux
    variable = rot_accel_z
    displacement = rot_z
    velocity = rot_vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./rot_vel_z]
    type = NewmarkVelAux
    variable = rot_vel_z
    acceleration = rot_accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
  [./x_inertial]
    type = NodalTranslationalInertia
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
    eta = 0.1
  [../]
  [./y_inertial]
    type = NodalTranslationalInertia
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
    eta = 0.1
  [../]
  [./z_inertial]
    type = NodalTranslationalInertia
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
    boundary = right
    beta = 0.25
    gamma = 0.5
    mass = 0.01899772
    eta = 0.1
  [../]
  [./rot_x_inertial]
    type = NodalRotationalInertia
    variable = rot_x
    rotations = 'rot_x rot_y rot_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations= 'rot_accel_x rot_accel_y rot_accel_z'
    boundary = right
    beta = 0.25
    gamma = 0.5
    Ixx = 2e-1
    Iyy = 1e-1
    Izz = 1e-1
    eta = 0.1
    component = 0
  [../]
  [./rot_y_inertial]
    type = NodalRotationalInertia
    variable = rot_y
    rotations = 'rot_x rot_y rot_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations= 'rot_accel_x rot_accel_y rot_accel_z'
    boundary = right
    beta = 0.25
    gamma = 0.5
    Ixx = 2e-1
    Iyy = 1e-1
    Izz = 1e-1
    eta = 0.1
    component = 1
  [../]
  [./rot_z_inertial]
    type = NodalRotationalInertia
    variable = rot_z
    rotations = 'rot_x rot_y rot_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations= 'rot_accel_x rot_accel_y rot_accel_z'
    boundary = right
    beta = 0.25
    gamma = 0.5
    Ixx = 2e-1
    Iyy = 1e-1
    Izz = 1e-1
    eta = 0.1
    component = 2
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.1 0.2 10.0'
    y = '0.0 1e-2  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  petsc_options_iname = '-ksp_type -pc_type'
  petsc_options_value = 'preonly   lu'

  dt = 0.1
  end_time = 5.0
  timestep_tolerance = 1e-6
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e4
    poissons_ratio = -0.999875
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.01
    Ay = 0.0
    Az = 0.0
    Iy = 1.0e-4
    Iz = 1.0e-4
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
[]

modules/tensor_mechanics/test/tests/jacobian/cosserat03.i

[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  active = 'cx_elastic cy_elastic cz_elastic x_couple y_couple z_couple x_moment y_moment z_moment'
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    displacements = 'disp_x disp_y disp_z'
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./z_couple]
    type = StressDivergenceTensors
    variable = wc_z
    displacements = 'wc_x wc_y wc_z'
    component = 2
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
  [./z_moment]
    type = MomentBalancing
    variable = wc_z
    component = 2
  [../]
[]


[Materials]
  [./elasticity_tensor]
    type = ComputeCosseratElasticityTensor
    B_ijkl = '1.3 0.98 1.4'
    fill_method_bending = 'general_isotropic'
    E_ijkl = '1 1.2 1.333 0.988 1 1.1 1.2 1.3 1.4 1 1.2 1.333 0.988 1 1.1 1.2 1.3 1.4 1.2 1 0.6'
    fill_method = 'symmetric21'
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/tensor_mechanics/test/tests/notched_plastic_block/biaxial_abbo.i

# Uses an Abbo et al smoothed version of Mohr-Coulomb (via TensorMechanicsPlasticMohrCoulomb and ComputeMultiPlasticityStress) to simulate the following problem.
# A cubical block is notched around its equator.
# All of its outer surfaces have roller BCs, but the notched region is free to move as needed
# The block is initialised with a high hydrostatic tensile stress
# Without the notch, the BCs do not allow contraction of the block, and this stress configuration is admissible
# With the notch, however, the interior parts of the block are free to move in order to relieve stress, and this causes plastic failure
# The top surface is then pulled upwards (the bottom is fixed because of the roller BCs)
# This causes more failure
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 9
    ny = 9
    nz = 9
    xmin = 0
    xmax = 0.1
    ymin = 0
    ymax = 0.1
    zmin = 0
    zmax = 0.1
  []
  [block_to_remove_xmin]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 -0.01 0.045'
    top_right = '0.01 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = generated_mesh
  []
  [block_to_remove_xmax]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0.09 -0.01 0.045'
    top_right = '0.11 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_xmin
  []
  [block_to_remove_ymin]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 -0.01 0.045'
    top_right = '0.11 0.01 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_xmax
  []
  [block_to_remove_ymax]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 0.09 0.045'
    top_right = '0.11 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_ymin
  []
  [remove_block]
    type = BlockDeletionGenerator
    block_id = 1
    input = block_to_remove_ymax
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_zz'
    eigenstrain_names = ini_stress
  [../]
[]

[Postprocessors]
  [./uz]
    type = PointValue
    point = '0 0 0.1'
    use_displaced_mesh = false
    variable = disp_z
  [../]
  [./s_zz]
    type = ElementAverageValue
    use_displaced_mesh = false
    variable = stress_zz
  [../]
  [./num_res]
    type = NumResidualEvaluations
  [../]
  [./nr_its] # num_iters is the average number of NR iterations encountered per element in this timestep
    type = ElementAverageValue
    variable = num_iters
  [../]
  [./max_nr_its] # num_iters is the average number of NR iterations encountered in the element in this timestep, so we must get max(max_nr_its) to obtain the max number of iterations
    type = ElementExtremeValue
    variable = num_iters
  [../]
  [./runtime]
    type = PerfGraphData
    data_type = TOTAL
    section_name = 'Root'
  [../]
[]

[BCs]
  # back=zmin, front=zmax, bottom=ymin, top=ymax, left=xmin, right=xmax
  [./xmin_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./xmax_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./ymin_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./ymax_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.0
  [../]
  [./zmin_zzero]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = '0'
  [../]
  [./zmax_disp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '1E-6*max(t,0)'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./num_iters]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./num_iters_auxk]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = num_iters
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 5E6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 10
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 0.02E6
    mc_edge_smoother = 29
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 16E9
    poissons_ratio = 0.25
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-11
    plastic_models = mc
    max_NR_iterations = 1000
    debug_fspb = crash
  [../]
  [./strain_from_initial_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6E6 0 0  0 6E6 0  0 0 6E6'
    eigenstrain_name = ini_stress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  start_time = -1
  end_time = 10
  dt = 1
  solve_type = NEWTON
  type = Transient

  l_tol = 1E-2
  nl_abs_tol = 1E-5
  nl_rel_tol = 1E-7
  l_max_its = 200
  nl_max_its = 400

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]


[Outputs]
  file_base = biaxial_abbo
  perf_graph = true
  exodus = false
  csv = true
[]

modules/richards/test/tests/jacobian_1/jn11.i

# unsaturated = false
# gravity = true
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffVG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./SUPGnone]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pressure]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    SUPG_UO = SUPGnone
    sat_UO = Saturation
    seff_UO = SeffVG
    viscosity = 1E-3
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn11
  exodus = false
[]

modules/phase_field/test/tests/SimpleACInterface/SimpleACInterface.i

#
# Test the parsed function free enery Allen-Cahn Bulk kernel
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 20
  ny = 20
  nz = 0
  xmin = 0
  xmax = 50
  ymin = 0
  ymax = 50
  zmin = 0
  zmax = 50
  elem_type = QUAD4

  uniform_refine = 1
[]

[Variables]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 25.0
      y1 = 25.0
      radius = 6.0
      invalue = 0.9
      outvalue = 0.1
      int_width = 3.0
    [../]
  [../]
[]

[Kernels]
  [./detadt]
    type = TimeDerivative
    variable = eta
  [../]

  [./ACBulk]
    type = AllenCahn
    variable = eta
    f_name = F
  [../]

  [./ACInterface]
    type = SimpleACInterface
    variable = eta
    kappa_name = 1
  [../]
[]

[Materials]
  [./consts]
    type = GenericConstantMaterial
    block = 0
    prop_names  = 'L'
    prop_values = '1'
  [../]

  [./free_energy]
    type = DerivativeParsedMaterial
    block = 0
    f_name = F
    args = 'eta'
    function = '2 * eta^2 * (1-eta)^2 - 0.2*eta'
    derivative_order = 2
  [../]
[]

[Executioner]
  type = Transient
  scheme = 'bdf2'

  solve_type = 'PJFNK'

  l_max_its = 15
  l_tol = 1.0e-4

  nl_max_its = 10
  nl_rel_tol = 1.0e-11

  start_time = 0.0
  num_steps = 2
  dt = 0.5
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/pressure_pulse/pressure_pulse_1d_2phasePSVG2.i

# Pressure pulse in 1D with 2 phases, 2components - transient

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
  xmin = 0
  xmax = 100
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./ppwater]
    initial_condition = 2e6
  [../]
  [./sgas]
    initial_condition = 0.3
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
    initial_condition = 1
  [../]
  [./massfrac_ph1_sp0]
    initial_condition = 0
  [../]
  [./ppgas]
    family = MONOMIAL
    order = FIRST
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = ppwater
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    variable = ppwater
    fluid_component = 0
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = sgas
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    variable = sgas
    fluid_component = 1
  [../]
[]

[AuxKernels]
  [./ppgas]
    type = PorousFlowPropertyAux
    property = pressure
    phase = 1
    variable = ppgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater sgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1e-4
    sat_lr = 0.3
    pc_max = 1e9
    log_extension = true
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid0]
      type = SimpleFluidProperties
      bulk_modulus = 2e9
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
    [./simple_fluid1]
      type = SimpleFluidProperties
      bulk_modulus = 2e7
      density0 = 1
      thermal_expansion = 0
      viscosity = 1e-5
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    phase0_porepressure = ppwater
    phase1_saturation = sgas
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'massfrac_ph0_sp0 massfrac_ph1_sp0'
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid0
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid1
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-15 0 0 0 1e-15 0 0 0 1e-15'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 0
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 1
    phase = 1
  [../]
[]

[BCs]
  [./leftwater]
    type = DirichletBC
    boundary = left
    value = 3e6
    variable = ppwater
  [../]
  [./rightwater]
    type = DirichletBC
    boundary = right
    value = 2e6
    variable = ppwater
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-20 10000'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1e3
  end_time = 1e4
[]

[VectorPostprocessors]
  [./pp]
    type = LineValueSampler
    sort_by = x
    variable = 'ppwater ppgas'
    start_point = '0 0 0'
    end_point = '100 0 0'
    num_points = 11
  [../]
[]

[Outputs]
  file_base = pressure_pulse_1d_2phasePSVG2
  print_linear_residuals = false
  [./csv]
    type = CSV
    execute_on = final
  [../]
[]

test/tests/postprocessors/displaced_mesh/elemental.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
  displacements = 'ux uy'
[]

[AuxVariables]
  [./ux]
    [./InitialCondition]
      type = FunctionIC
      function = x
    [../]
  [../]
  [./uy]
    [./InitialCondition]
      type = FunctionIC
      function = y
    [../]
  [../]
  [./c]
    initial_condition = 1
  [../]
[]

[Variables]
  [./a]
  [../]
[]
[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
[]

[Postprocessors]
  [./without]
    type = ElementIntegralVariablePostprocessor
    variable = c
    execute_on = initial
  [../]
  [./with]
    type = ElementIntegralVariablePostprocessor
    variable = c
    use_displaced_mesh = true
    execute_on = initial
  [../]
[]

[Problem]
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 0
[]

[Outputs]
  [./out]
    type = Exodus
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform5.i

# Using CappedMohrCoulomb with tensile failure only
# A single element is incrementally stretched in the in the z and x directions
# This causes the return direction to be along the hypersurface sigma_III = 0
# and the resulting stresses are checked to lie on the expected yield surface

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = finite
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '4*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = 'z*(t-0.5)'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 0.1
  type = Transient
[]


[Outputs]
  file_base = small_deform5
  csv = true
[]

test/tests/geomsearch/3d_moving_penetration/pl_test3tt.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test3tt.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
    tangential_tolerance = 0.09
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
    tangential_tolerance = 0.09
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    preset = false
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 2.0 -2.0  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.02
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test3tt_out
  exodus = true
[]

modules/combined/test/tests/power_law_creep/power_law_creep_sm.i

# 1x1x1 unit cube with uniform pressure on top face

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[AuxVariables]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./elastic_strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1'
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = HeatConductionTimeDerivative
    variable = temp
  [../]
[]


[AuxKernels]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./creep_strain_xx]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_xx
    index = 0
  [../]
  [./creep_strain_yy]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_yy
    index = 1
  [../]
  [./creep_strain_zz]
    type = MaterialTensorAux
    tensor = creep_strain
    variable = creep_strain_zz
    index = 2
  [../]
  [./elastic_strain_yy]
    type = MaterialTensorAux
    tensor = elastic_strain
    variable = elastic_strain_yy
    index = 1
  [../]
[]


[BCs]
  [./u_top_pull]
    type = Pressure
    variable = disp_y
    component = 1
    boundary = top
    factor = -10.0e6
    function = top_pull
  [../]

  [./u_bottom_fix]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'bottom top'
    value = 1000.0
  [../]
[]

[Materials]
  [./creep]
    type = PowerLawCreep
    block = 0
    youngs_modulus = 2.e11
    poissons_ratio = .3
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
    temp = temp
    formulation = Nonlinear3D
  [../]

  [./thermal]
    type = HeatConductionMaterial
    block = 0
    specific_heat = 1.0
    thermal_conductivity = 100.0
  [../]
  [./density]
    type = Density
    block = 0
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.0
  end_time = 1.0
  num_steps = 10
  dt = 0.1
[]

[Outputs]
  exodus = true
  file_base = power_law_creep_out
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/glued_kinematic.i

[Mesh]
  file = blocks_2d_nogap.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    strain = FINITE
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.01
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = ComputeIsotropicElasticityTensor
    block = '1'
    youngs_modulus = 1e7
    poissons_ratio = 0.3
  [../]
  [./right]
    type = ComputeIsotropicElasticityTensor
    block = '2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    system = Constraint
    master = 2
    slave = 3
    model = glued
    penalty = 1e+6
  [../]
[]

test/tests/time_steppers/cutback_factor_at_failure/function_dt_cutback.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Functions]
  [./dts]
    type = PiecewiseLinear
    x = '0   0.85  2'
    y = '0.2 0.25  0.25'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Problem]
  type = FailingProblem
  fail_step = 3
[]

[Executioner]
  type = Transient
  num_steps = 10
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  [./TimeStepper]
    type = FunctionDT
    function = dts
    min_dt = 0.01
    cutback_factor_at_failure = 0.75
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/examples/tutorial/07.i

# Darcy flow with a tracer that precipitates causing mineralisation and porosity changes and permeability changes
[Mesh]
  [annular]
    type = AnnularMeshGenerator
    nr = 10
    rmin = 1.0
    rmax = 10
    growth_r = 1.4
    nt = 4
    dmin = 0
    dmax = 90
  []
  [./make3D]
    input = annular
    type = MeshExtruderGenerator
    extrusion_vector = '0 0 12'
    num_layers = 3
    bottom_sideset = 'bottom'
    top_sideset = 'top'
  [../]
  [./shift_down]
    type = TransformGenerator
    transform = TRANSLATE
    vector_value = '0 0 -6'
    input = make3D
  [../]
  [./aquifer]
    type = SubdomainBoundingBoxGenerator
    block_id = 1
    bottom_left = '0 0 -2'
    top_right = '10 10 2'
    input = shift_down
  [../]
  [./injection_area]
    type = ParsedGenerateSideset
    combinatorial_geometry = 'x*x+y*y<1.01'
    included_subdomain_ids = 1
    new_sideset_name = 'injection_area'
    input = 'aquifer'
  [../]
  [./rename]
    type = RenameBlockGenerator
    old_block_id = '0 1'
    new_block_name = 'caps aquifer'
    input = 'injection_area'
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer_concentration]
  [../]
[]

[PorousFlowFullySaturated]
  porepressure = porepressure
  coupling_type = Hydro
  gravity = '0 0 0'
  fp = the_simple_fluid
  mass_fraction_vars = tracer_concentration
  number_aqueous_kinetic = 1
  temperature = 283.0
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 0.1
  [../]
  [./mineral_conc]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./initial_and_reference_conc]
    initial_condition = 0
  [../]
  [./porosity]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./permeability]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./mineral_conc]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = mineral_conc
  [../]
  [./porosity]
    type = PorousFlowPropertyAux
    property = porosity
    variable = porosity
  [../]
  [./permeability]
    type = PorousFlowPropertyAux
    property = permeability
    column = 0
    row = 0
    variable = permeability
  [../]
[]

[Kernels]
  [./precipitation_dissolution]
    type = PorousFlowPreDis
    mineral_density = 1000.0
    stoichiometry = 1
    variable = tracer_concentration
  [../]
[]

[BCs]
  [./constant_injection_of_tracer]
    type = PorousFlowSink
    variable = tracer_concentration
    flux_function = -5E-3
    boundary = injection_area
  [../]
  [./constant_outer_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = rmax
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      viscosity = 1.0E-3
      density0 = 1000.0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
    chemical = true
    initial_mineral_concentrations = initial_and_reference_conc
    reference_chemistry = initial_and_reference_conc
  [../]
  [./permeability_aquifer]
    type = PorousFlowPermeabilityKozenyCarman
    block = aquifer
    k0 = 1E-14
    m = 2
    n = 3
    phi0 = 0.1
    poroperm_function = kozeny_carman_phi0
  [../]
  [./permeability_caps]
    type = PorousFlowPermeabilityKozenyCarman
    block = caps
    k0 = 1E-15
    k_anisotropy = '1 0 0  0 1 0  0 0 0.1'
    m = 2
    n = 3
    phi0 = 0.1
    poroperm_function = kozeny_carman_phi0
  [../]
  [./precipitation_dissolution]
    type = PorousFlowAqueousPreDisChemistry
    reference_temperature = 283.0
    activation_energy = 1 # irrelevant because T=Tref
    equilibrium_constants = eqm_k # equilibrium tracer concentration
    kinetic_rate_constant = 1E-8
    molar_volume = 1
    num_reactions = 1
    primary_activity_coefficients = 1
    primary_concentrations = tracer_concentration
    reactions = 1
    specific_reactive_surface_area = 1
  [../]
  [./mineral_concentration]
    type = PorousFlowAqueousPreDisMineral
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1E6
  dt = 1E5
  nl_abs_tol = 1E-10
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_3d_topo_q_func.i

#This tests the J-Integral evaluation capability.
#This is a 3d extrusion of a 2d plane strain model with 2 elements
#through the thickness, and calculates the J-Integrals using options
#to treat it as 3d.
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack3d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  q_function_type = Topology
  ring_first = 1
  ring_last = 3
  output_q = false
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = 500
    value = 0.0
  [../]
  [./no_z2]
    type = DirichletBC
    variable = disp_z
    boundary = 510
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]


[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = j_integral_3d_topo_q_func_out
  exodus = true
  csv = true
[]

test/tests/outputs/system_info/system_info.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Adaptivity]
  marker = marker
  max_h_level = 2
  [./Indicators]
    [./indicator]
      type = GradientJumpIndicator
      variable = u
    [../]
  [../]
  [./Markers]
    [./marker]
      type = ErrorFractionMarker
      coarsen = 0.1
      indicator = indicator
      refine = 0.7
    [../]
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux_u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 3
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/glued_penalty_sm.i

[Mesh]
  file = blocks_2d_nogap.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.01
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e7
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    system = Constraint
    master = 2
    slave = 3
    model = glued
    formulation = penalty
    penalty = 1e+7
  [../]
[]

test/tests/geomsearch/2d_moving_penetration/pl_test2.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  file = pl_test2.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_rel_tol = 1e-9
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
[]

[Outputs]
  file_base = pl_test2_out
  exodus = true
[]

examples/ex20_user_objects/ex20.i

[Mesh]
  file = two_squares.e
  dim = 2
[]

[Variables]
  [./u]
    initial_condition = 0.01
  [../]
[]

[Kernels]
  [./diff]
    type = ExampleDiffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = leftleft
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = rightright
    value = 1
  [../]
[]

[Materials]
  [./badm]
    type = BlockAverageDiffusionMaterial
    block = 'left right'
    block_average_userobject = bav
  [../]
[]

[UserObjects]
  [./bav]
    type = BlockAverageValue
    variable = u
    execute_on = timestep_begin
    outputs = none
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 1

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/postprocessors/mms_sine/3_d_mms_sine_test.i

#3_d_mms_sine_test.i
#This is for u = sin(a*x*y*z*t)
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 4
  ny = 4
  nz = 4
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  zmin = 0
  zmax = 1
  elem_type = HEX8
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables] #We added nodal AuxVariables
  active = 'nodal_aux'

  [./nodal_aux]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]

  active = 'diff implicit conv forcing reaction'

  [./diff]
    type = MMSDiffusion
    variable = u
  [../]

  [./implicit] #We got from MOOSE kernels
    type = MMSImplicitEuler
    variable = u
  [../]

  [./conv] #We created our own convection kernel
    type = MMSConvection
    variable = u
    x = -1
    y = 2
    z = -3
  [../]

  [./forcing] #We created our own forcing kernel
    type = MMSForcing
    variable = u
  [../]

  [./reaction] #We got from MOOSE kernels
    type = MMSReaction
    variable = u
  [../]
[]
[AuxKernels] #We created our own AuxKernel
  active = 'ConstantAux'

  [./ConstantAux]
    type = MMSConstantAux
    variable = nodal_aux
  [../]
[]

[BCs]
  active = 'all_u'

  [./all_u]
    type = MMSCoupledDirichletBC
    variable = u
    boundary = '0 1 2 3 4 5'
 #   value = sin(a*x*y*z*t)
  [../]
[]

[Executioner]
  type = Transient
  dt = .1
  num_steps = 5

  solve_type = 'PJFNK'
[]

[Outputs]
  file_base = 3_d_out
  exodus = true
[]

test/tests/functions/piecewise_multilinear/time.i

# PiecewiseMultilinear function tests for time-dependent data
# See [Functions] block for a description of the tests

[Mesh]
  type = GeneratedMesh
  dim = 3
  xmin = 0
  xmax = 1
  nx = 1
  ymin = 0
  ymax = 1
  ny = 1
  zmin = 0
  zmax = 1
  nz = 1
[]

[Variables]
  [./dummy]
  [../]
[]

[Kernels]
  [./dummy_u]
    type = TimeDerivative
    variable = dummy
  [../]
[]


[AuxVariables]
  [./time1_var]
  [../]
[]

[AuxKernels]
  [./time1_AuxK]
    type = FunctionAux
    variable = time1_var
    function = time1_fcn
  [../]
[]

[Functions]
# This increases linearly: f = t
  [./time1_fcn]
    type = PiecewiseMultilinear
    data_file = time1.txt
  [../]
  [./time1_answer]
    type = ParsedFunction
    value = t
  [../]
[]

[Postprocessors]
  [./time1_pp]
    type = NodalL2Error
    function = time1_answer
    variable = time1_var
  [../]
[]


[Executioner]
  type = Transient
  dt = 0.1
  end_time = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = time
  hide = dummy
  csv = true
[]

test/tests/restart/new_dt/new_dt.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  checkpoint = true
[]

test/tests/outputs/overwrite/overwrite.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    overwrite = true # testing this
  [../]
[]

test/tests/mesh/custom_partitioner/custom_linear_partitioner_test_displacement.i

[Mesh]
  dim = 2
  type = GeneratedMesh
  nx = 3
  ny = 3
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 10.0
  uniform_refine = 2
  displacements = 'u aux_v'

  [./Partitioner]
    type = LibmeshPartitioner
    partitioner = linear
  [../]
  parallel_type = replicated
[]

[Functions]
  [./aux_v_fn]
    type = ParsedFunction
    value = x*(y-0.5)/5
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]

  [./v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./udiff]
    type = Diffusion
    variable = u
  [../]

  [./uie]
    type = TimeDerivative
    variable = u
  [../]

  [./vdiff]
    type = Diffusion
    variable = v
  [../]


  [./vie]
    type = TimeDerivative
    variable = v
  [../]
[]

[BCs]
  [./uleft]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./uright]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 0.1
  [../]

  [./vleft]
    type = DirichletBC
    variable = v
    boundary = 1
    value = 1
  [../]

  [./vright]
    type = DirichletBC
    variable = v
    boundary = 2
    value = 0
  [../]
[]

[AuxVariables]
  [./aux_v]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./aux_k_1]
    type = FunctionAux
    variable = aux_v
    function = aux_v_fn
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  start_time = 0.0
  num_steps = 2
  dt = .1

  [./Adaptivity]
    refine_fraction = 0.2
    coarsen_fraction = 0.3
    max_h_level = 4
  [../]
[]

[Outputs]
  file_base = custom_linear_partitioner_test_displacement
  [./out]
    type = Exodus
    use_displaced = true
  [../]
[]

modules/tensor_mechanics/test/tests/t_stress/t_stress_ellip_crack_3d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = ellip_crack_4sym_norad_mm.e
  displacements = 'disp_x disp_y disp_z'
  partitioner = centroid
  centroid_partitioner_direction = z
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstantUp]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -689.5 #MPa
  [../]
[]

[DomainIntegral]
  integrals = 'JIntegral InteractionIntegralKI InteractionIntegralT'
  boundary = 1001
  crack_direction_method = CurvedCrackFront
  crack_end_direction_method = CrackDirectionVector
  crack_direction_vector_end_1 = '0.0 1.0 0.0'
  crack_direction_vector_end_2 = '1.0 0.0 0.0'
  radius_inner = '12.5 25.0 37.5'
  radius_outer = '25.0 37.5 50.0'
  intersecting_boundary = '1 2'
  symmetry_plane = 2
  youngs_modulus = 206.8e+3 #MPa
  poissons_ratio = 0.3
  block = 1
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
  incremental = true
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = FINITE
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress strain_xx strain_yy strain_zz'
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_z
    boundary = 6
    value = 0.0
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 12
    value = 0.0
  [../]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./Pressure]
    [./Side1]
      boundary = 5
      function = rampConstantUp
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 206.8e+3
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
[]

[Executioner]
   type = Transient
  #petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = '201                hypre    boomeramg      4'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 20
   nl_abs_tol = 1e-5
   nl_rel_tol = 1e-11
   l_tol = 1e-2

   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = t_stress_ellip_crack_out
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/j_integral/j_integral_2d_small_strain.i

#This tests the J-Integral evaluation capability.
#This is a 2d plane strain model
#The analytic solution for J1 is 2.434.  This model
#converges to that solution with a refined mesh.
#Reference: National Agency for Finite Element Methods and Standards (U.K.):
#Test 1.1 from NAFEMS publication "Test Cases in Linear Elastic Fracture
#Mechanics" R0020.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y'
  volumetric_locking_correction = true
[]

[Mesh]
  file = crack2d.e
[]

[AuxVariables]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./rampConstant]
    type = PiecewiseLinear
    x = '0. 1.'
    y = '0. 1.'
    scale_factor = -1e2
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '4.0 4.5 5.0 5.5 6.0'
  radius_outer = '4.5 5.0 5.5 6.0 6.5'
  output_q = false
  incremental = false
[]

[Modules/TensorMechanics/Master]
  [./master]
    strain = SMALL
    add_variables = true
    incremental = false
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress'
    planar_formulation = PLANE_STRAIN
  [../]
[]

[AuxKernels]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 700
    value = 0.0
  [../]

  [./Pressure]
    [./Side1]
      boundary = 400
      function = rampConstant
    [../]
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 207000
    poissons_ratio = 0.3
  [../]
  [./elastic_stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Executioner]
  type = Transient

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 20
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-5
  l_tol = 1e-2

  start_time = 0.0
  dt = 1

  end_time = 1
  num_steps = 1
[]

[Outputs]
  file_base = j_integral_2d_small_strain_out
  exodus = true
  csv = true
[]

modules/richards/test/tests/dirac/bh02.i

# fully-saturated
# production
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = pressure
  [../]
  [./DensityConstBulk]
    type = RichardsDensityConstBulk
    dens0 = 1000
    bulk_mod = 2E9
  [../]
  [./Seff1VG]
    type = RichardsSeff1VG
    m = 0.8
    al = 1E-5
  [../]
  [./RelPermPower]
    type = RichardsRelPermPower
    simm = 0.0
    n = 2
  [../]
  [./Saturation]
    type = RichardsSat
    s_res = 0
    sum_s_res = 0
  [../]
  [./SUPGstandard]
    type = RichardsSUPGstandard
    p_SUPG = 1E8
  [../]

  [./borehole_total_outflow_mass]
    type = RichardsSumQuantity
  [../]
[]


[Variables]
  active = 'pressure'
  [./pressure]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./p_ic]
    type = FunctionIC
    variable = pressure
    function = initial_pressure
  [../]
[]

[AuxVariables]
  [./Seff1VG_Aux]
  [../]
[]


[Kernels]
  active = 'richardsf richardst'
  [./richardst]
    type = RichardsMassChange
    variable = pressure
  [../]
  [./richardsf]
    type = RichardsFlux
    variable = pressure
  [../]
[]

[DiracKernels]
  [./bh]
    type = RichardsBorehole
    bottom_pressure = 0
    point_file = bh02.bh
    SumQuantityUO = borehole_total_outflow_mass
    variable = pressure
    unit_weight = '0 0 0'
    character = 1
  [../]
[]


[Postprocessors]
  [./bh_report]
    type = RichardsPlotQuantity
    uo = borehole_total_outflow_mass
  [../]

  [./fluid_mass0]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_begin
  [../]

  [./fluid_mass1]
    type = RichardsMass
    variable = pressure
    execute_on = timestep_end
  [../]

  [./zmass_error]
    type = FunctionValuePostprocessor
    function = mass_bal_fcn
    execute_on = timestep_end
  [../]

  [./p0]
    type = PointValue
    variable = pressure
    point = '1 1 1'
    execute_on = timestep_end
  [../]
[]


[Functions]
  [./initial_pressure]
    type = ParsedFunction
    value = 1E7
  [../]

  [./mass_bal_fcn]
    type = ParsedFunction
    value = abs((a-c+d)/2/(a+c))
    vars = 'a c d'
    vals = 'fluid_mass1 fluid_mass0 bh_report'
  [../]
[]


[Materials]
  [./all]
    type = RichardsMaterial
    block = 0
    viscosity = 1E-3
    mat_porosity = 0.1
    mat_permeability = '1E-12 0 0  0 1E-12 0  0 0 1E-12'
    density_UO = DensityConstBulk
    relperm_UO = RelPermPower
    sat_UO = Saturation
    seff_UO = Seff1VG
    SUPG_UO = SUPGstandard
    gravity = '0 0 0'
    linear_shape_fcns = true
  [../]
[]

[AuxKernels]
  [./Seff1VG_AuxK]
    type = RichardsSeffAux
    variable = Seff1VG_Aux
    seff_UO = Seff1VG
    pressure_vars = pressure
  [../]
[]


[Preconditioning]
  [./usual]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_max_it'
    petsc_options_value = 'bcgs bjacobi 1E-10 1E-10 10000 30'
  [../]
[]


[Executioner]
  type = Transient
  end_time = 0.5
  dt = 1E-2
  solve_type = NEWTON

[]

[Outputs]
  file_base = bh02
  exodus = false
  csv = true
  execute_on = timestep_end
[]

modules/tensor_mechanics/test/tests/jacobian/inertial_torque.i

# Check of the InertialTorque Jacobian
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  velocities = 'vel_x vel_y vel_z'
  accelerations = 'accel_x accel_y accel_z'
  gamma = 0.4
  beta = 0.4
  alpha = 0.1
  eta = 0.1
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./vel_x]
  [../]
  [./vel_y]
  [../]
  [./vel_z]
  [../]
  [./accel_x]
  [../]
  [./accel_y]
  [../]
  [./accel_z]
  [../]
[]

[ICs]
  [./disp_x]
    type = RandomIC
    variable = disp_x
  [../]
  [./disp_y]
    type = RandomIC
    variable = disp_y
  [../]
  [./disp_z]
    type = RandomIC
    variable = disp_z
  [../]
  [./vel_x]
    type = RandomIC
    variable = vel_x
  [../]
  [./vel_y]
    type = RandomIC
    variable = vel_y
  [../]
  [./vel_z]
    type = RandomIC
    variable = vel_z
  [../]
  [./accel_x]
    type = RandomIC
    variable = accel_x
  [../]
  [./accel_y]
    type = RandomIC
    variable = accel_y
  [../]
  [./accel_z]
    type = RandomIC
    variable = accel_z
  [../]
[]


[Kernels]
  [./icm_x]
    type = InertialTorque
    component = 0
    variable = disp_x
  [../]
  [./icm_y]
    type = InertialTorque
    component = 1
    variable = disp_y
  [../]
  [./icm_z]
    type = InertialTorque
    component = 2
    variable = disp_z
  [../]
[]


[AuxKernels]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    execute_on = timestep_end
  [../]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    execute_on = timestep_end
  [../]
[]

[Materials]
  [./density]
    type = GenericConstantMaterial
    prop_names = density
    prop_values = 3.0
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/hertz_contact/hertz_contact_rz_quad8.i

# Hertz Contact: Sphere on sphere

# Spheres have the same radius, Young's modulus, and Poisson's ratio.

# Define E:
# 1/E = (1-nu1^2)/E1 + (1-nu2^2)/E2
#
# Effective radius R:
# 1/R = 1/R1 + 1/R2
#
# F is the applied compressive load.
#
# Area of contact a::
# a^3 = 3FR/4E
#
# Depth of indentation d:
# d = a^2/R
#
#
# Let R1 = R2 = 2.  Then R = 1.
#
# Let nu1 = nu2 = 0.25, E1 = E2 = 1.40625e7.  Then E = 7.5e6.
#
# Let F = 10000.  Then a = 0.1, d = 0.01.
#

[Problem]
  coord_type = RZ
[]

[Mesh]#Comment
  file = hertz_contact_rz_quad8.e
  displacements = 'disp_x disp_y'
[] # Mesh

[Functions]
  [./pressure]
    type = PiecewiseLinear
    x = '0. 1. 2.'
    y = '0. 1. 1.'
    scale_factor = 795.77471545947674 # 10000/pi/2^2
  [../]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.  1.    2.'
    y = '0. -0.01 -0.01'
  [../]
[] # Functions

[Variables]

  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]

  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]

[] # Variables

[AuxVariables]

  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./hydrostatic]
    order = CONSTANT
    family = MONOMIAL
  [../]

[] # AuxVariables

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
  [../]
[]

[AuxKernels]

  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
  [../]
  [./hydrostatic]
    type = MaterialTensorAux
    tensor = stress
    variable = hydrostatic
    quantity = hydrostatic
  [../]

[] # AuxKernels

[BCs]

  [./base_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1000
    value = 0.0
  [../]

  [./symm_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./disp_y]
    type = FunctionDirichletBC
    variable = disp_y
    component = 1
    boundary = 2
    function = disp_y
  [../]

[] # BCs

[Contact]
  [./dummy_name]
    master = 1000
    slave = 100
    disp_x = disp_x
    disp_y = disp_y
    penalty = 1e7
  [../]
[]

[Materials]

  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1.40625e7
    poissons_ratio = 0.25
  [../]
  [./stiffStuff2] # Rigid block
    type = Elastic
    block = 1000

    disp_r = disp_x
    disp_z = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.0
  [../]

[] # Materials

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]

  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      101'


  line_search = 'none'


  nl_abs_tol = 1e-7

  l_max_its = 200

  start_time = 0.0
  dt = 0.5
  end_time = 2.0

  [./Quadrature]
    order = THIRD
  [../]

[] # Executioner

[Postprocessors]
  [./maxdisp]
    type = NodalVariableValue
    nodeid = 103 # 104-1 where 104 is the exodus node number of the top-left node
    variable = disp_y
  [../]
[]

[Outputs]
  elemental_as_nodal = true
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
[] # Output

modules/combined/test/tests/cavity_pressure/multiple_postprocessors.i

#
# Cavity Pressure Test (Volume input as a vector of postprocessors)
#
# This test is designed to compute an internal pressure based on
#   p = n * R * T / V
# where
#   p is the pressure
#   n is the amount of material in the volume (moles)
#   R is the universal gas constant
#   T is the temperature
#   V is the volume
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total
#   initial volume is 7.
# The test adjusts n, T, and V in the following way:
#   n => n0 + alpha * t
#   T => T0 + beta * t
#   V => V0 + gamma * t
# with
#   alpha = n0
#   beta = T0 / 2
#   gamma = - (0.003322259...) * V0
#   T0 = 240.54443866068704
#   V0 = 7
#   n0 = f(p0)
#   p0 = 100
#   R = 8.314472 J * K^(-1) * mol^(-1)
#
# So, n0 = p0 * V0 / R / T0 = 100 * 7 / 8.314472 / 240.544439
#        = 0.35
#
# In this test the internal volume is calculated as the sum of two Postprocessors
# internalVolumeInterior and internalVolumeExterior.  This sum equals the value
# reported by the internalVolume postprocessor.
#
# The parameters combined at t = 1 gives p = 301.
#

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  volumetric_locking_correction = true
[]

[Mesh]
  file = 3d.e
[]

[Functions]
  [./displ_positive]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 0.0029069767441859684'
  [../]
  [./displ_negative]
    type = PiecewiseLinear
    x = '0 1'
    y = '0 -0.0029069767441859684'
  [../]
  [./temp1]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1.5'
    scale_factor = 240.54443866068704
  [../]
  [./material_input_function]
    type = PiecewiseLinear
    x = '0    1'
    y = '0 0.35'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./temp]
    initial_condition = 240.54443866068704
  [../]
  [./material_input]
  [../]
[]

[AuxVariables]
  [./pressure_residual_x]
  [../]
  [./pressure_residual_y]
  [../]
  [./pressure_residual_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
  [./heat]
    type = Diffusion
    variable = temp
    use_displaced_mesh = true
  [../]
  [./material_input_dummy]
    type = Diffusion
    variable = material_input
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
    variable = stress_xx
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 1
    variable = stress_yy
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 2
    variable = stress_zz
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 0
    index_j = 1
    variable = stress_xy
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 1
    index_j = 2
    variable = stress_yz
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    index_i = 2
    index_j = 0
    variable = stress_zx
  [../]
[]

[BCs]
  [./no_x_exterior]
    type = DirichletBC
    variable = disp_x
    boundary = '7 8'
    value = 0.0
  [../]
  [./no_y_exterior]
    type = DirichletBC
    variable = disp_y
    boundary = '9 10'
    value = 0.0
  [../]
  [./no_z_exterior]
    type = DirichletBC
    variable = disp_z
    boundary = '11 12'
    value = 0.0
  [../]
  [./prescribed_left]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 13
    function = displ_positive
  [../]
  [./prescribed_right]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 14
    function = displ_negative
  [../]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '15 16'
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_z
    boundary = '17 18'
    value = 0.0
  [../]
  [./no_x_interior]
    type = DirichletBC
    variable = disp_x
    boundary = '1 2'
    value = 0.0
  [../]
  [./no_y_interior]
    type = DirichletBC
    variable = disp_y
    boundary = '3 4'
    value = 0.0
  [../]
  [./no_z_interior]
    type = DirichletBC
    variable = disp_z
    boundary = '5 6'
    value = 0.0
  [../]
  [./temperatureInterior]
    type = FunctionDirichletBC
    boundary = 100
    function = temp1
    variable = temp
  [../]
  [./MaterialInput]
    type = FunctionDirichletBC
    boundary = '100 13 14 15 16'
    function = material_input_function
    variable = material_input
  [../]
  [./CavityPressure]
    [./1]
      boundary = 100
      initial_pressure = 100
      material_input = materialInput
      R = 8.314472
      temperature = aveTempInterior
      volume = 'internalVolumeInterior internalVolumeExterior'
      startup_time = 0.5
      output = ppress
      save_in = 'pressure_residual_x pressure_residual_y pressure_residual_z'
    [../]
  [../]
[]

[Materials]
  [./elast_tensor1]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e1
    poissons_ratio = 0
    block = 1
  [../]
  [./strain1]
    type = ComputeFiniteStrain
    block = 1
  [../]
  [./stress1]
    type = ComputeFiniteStrainElasticStress
    block = 1
  [../]
  [./elast_tensor2]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    poissons_ratio = 0
    block = 2
  [../]
  [./strain2]
    type = ComputeFiniteStrain
    block = 2
  [../]
  [./stress2]
    type = ComputeFiniteStrainElasticStress
    block = 2
  [../]
[]

[Executioner]
  type = Transient

  petsc_options_iname = '-pc_type -sub_pc_type'
  petsc_options_value = 'asm       lu'

  nl_rel_tol = 1e-12
  l_tol = 1e-12

  l_max_its = 20

  dt = 0.5
  end_time = 1.0
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 100
    execute_on = 'initial linear'
  [../]
  [./aveTempInterior]
    type = SideAverageValue
    boundary = 100
    variable = temp
    execute_on = 'initial linear'
  [../]
  [./internalVolumeInterior]
    type = InternalVolume
    boundary = '1 2 3 4 5 6'
    execute_on = 'initial linear'
  [../]
  [./internalVolumeExterior]
    type = InternalVolume
    boundary = '13 14 15 16 17 18'
    execute_on = 'initial linear'
  [../]
  [./materialInput]
    type = SideAverageValue
    boundary = '7 8 9 10 11 12'
    variable = material_input
    execute_on = linear
  [../]
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/static_deformations/beam_cosserat_02_apply_stress.i

# Beam bending.
# One end is clamped and the other end is subjected to a stress
# and micromechanical moment that will induce bending.
# The stress that will induce bending around the y axis is
# stress_xx = EAz
# This implies a micromechanical moment-stress of
# m_yx = (1/12)EAh^2 for joint_shear_stiffness=0.
# For joint_shear_stiffness!=0, the micromechanical moment-stress
# is
# m_yx = (1/12)EAa^2 G/(ak_s + G)
# All other stresses and moment stresses are assumed to be zero.
# With joint_shear_stiffness=0, and introducing D=-poisson*A, the
# nonzero strains are
# ep_xx = Az
# ep_yy = Dz
# ep_zz = Dz
# kappa_xy = -D
# kappa_yx = A
# This means the displacements are:
# u_x = Axz
# u_y = Dzy
# u_z = -(A/2)x^2 + (D/2)(z^2-y^2)
# wc_x = -Dy
# wc_y = Ax
# wc_z = 0
# This is bending of a bar around the y axis, in plane stress
# (stress_yy=0).  Displacements at the left-hand (x=0) are applied
# according to the above formulae; wc_x and wc_y are applied throughout
# the bar; and stress_xx is applied at the right-hand end (x=10).
# The displacements are measured and
# compared with the above formulae.
# The test uses: E=1.2, poisson=0.3, A=1.11E-2, h=2, ks=0.1, so
# stress_xx = 1.332E-2*z
# m_yx = 0.2379E-2
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 1
  nz = 10
  xmin = 0
  xmax = 10
  ymin = -1
  ymax = 1
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  #use_displaced_mesh = false
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    displacements = 'wc_x wc_y wc_z'
    component = 1
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
[]

[BCs]
  # zmin is called back
  # zmax is called front
  # ymin is called bottom
  # ymax is called top
  # xmin is called left
  # xmax is called right
  [./clamp_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = left
    function = '-0.3*(z*z-y*y)/2.0*1.11E-2'
  [../]
  [./clamp_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = left
    function = '-0.3*z*y*1.11E-2'
  [../]
  [./clamp_x]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./end_stress]
    type = FunctionNeumannBC
    boundary = right
    function = z*1.2*1.11E-2
    variable = disp_x
  [../]
  [./fix_wc_x]
    type = FunctionDirichletBC
    variable = wc_x
    boundary = 'left' # right top bottom front back'
    function = '0.3*y*1.11E-2'
  [../]
  [./fix_wc_y]
    type = FunctionDirichletBC
    variable = wc_y
    boundary = 'left' # right top bottom front back'
    function = '1.11E-2*x'
  [../]
  [./end_moment]
    type = VectorNeumannBC
    boundary = right
    variable = wc_y
    vector_value = '2.3785714286E-3 0 0'
  [../]
[]


[AuxVariables]
  [./wc_z]
  [../]
  [./strain_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./strain_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_xz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_yz]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zx]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./couple_stress_zz]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xy
    index_i = 0
    index_j = 1
  [../]
  [./strain_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xz
    index_i = 0
    index_j = 2
  [../]
  [./strain_yx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yx
    index_i = 1
    index_j = 0
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yz
    index_i = 1
    index_j = 2
  [../]
  [./strain_zx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zx
    index_i = 2
    index_j = 0
  [../]
  [./strain_zy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zy
    index_i = 2
    index_j = 1
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_zy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./couple_stress_xx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./couple_stress_xy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./couple_stress_xz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./couple_stress_yx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yx
    index_i = 1
    index_j = 0
  [../]
  [./couple_stress_yy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./couple_stress_yz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./couple_stress_zx]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./couple_stress_zy]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zy
    index_i = 2
    index_j = 1
  [../]
  [./couple_stress_zz]
    type = RankTwoAux
    rank_two_tensor = couple_stress
    variable = couple_stress_zz
    index_i = 2
    index_j = 2
  [../]
[]

[VectorPostprocessors]
  [./soln]
    type = LineValueSampler
    sort_by = x
    variable = 'disp_x disp_y disp_z stress_xx stress_xy stress_xz stress_yx stress_yy stress_yz stress_zx stress_zy stress_zz wc_x wc_y wc_z couple_stress_xx couple_stress_xy couple_stress_xz couple_stress_yx couple_stress_yy couple_stress_yz couple_stress_zx couple_stress_zy couple_stress_zz'
    start_point = '0 0 0.5'
    end_point = '10 0 0.5'
    num_points = 11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeLayeredCosseratElasticityTensor
    young = 1.2
    poisson = 0.3
    layer_thickness = 2.0
    joint_normal_stiffness = 1E16
    joint_shear_stiffness = 0.1
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol -ksp_max_it -sub_pc_factor_shift_type -pc_asm_overlap -ksp_gmres_restart'
    petsc_options_value = 'gmres asm lu 1E-11 1E-11 10 1E-15 1E-10 100 NONZERO 2 100'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = beam_cosserat_02_apply_stress
  exodus = true
  csv = true
[]

test/tests/kernels/ad_mat_diffusion/1D_transient.i

# This test solves a 1D transient heat equation
# The error is calculated by comparing to the analytical solution
# The problem setup and analytical solution are taken from "Advanced Engineering
# Mathematics, 10th edition" by Erwin Kreyszig.
# http://www.amazon.com/Advanced-Engineering-Mathematics-Erwin-Kreyszig/dp/0470458364
# It is Example 1 in section 12.6 on page 561

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 160
  xmax = 80
[]

[Variables]
  [./T]
  [../]
[]

[ICs]
  [./T_IC]
    type = FunctionIC
    variable = T
    function = '100*sin(pi*x/80)'
  [../]
[]

[Kernels]
  [./diff]
    type = MatDiffusion
    variable = T
    diffusivity = 0.95
  [../]
  [./dt]
    type = CoefTimeDerivative
    variable = T
    Coefficient = 0.82064
  [../]
[]

[BCs]
  [./sides]
    type = DirichletBC
    variable = T
    boundary = 'left right'
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  dt = 1e-2
  end_time = 1
[]

[Postprocessors]
  [./error]
    type = NodalL2Error
    function = '100*sin(pi*x/80)*exp(-0.95/(0.092*8.92)*pi^2/80^2*t)'
    variable = T
    outputs = console
  [../]
[]

[Outputs]
  exodus = true
[]

modules/combined/examples/phase_field-mechanics/Nonconserved.i

#
# Example 2
# Phase change driven by a mechanical (elastic) driving force.
# An oversized phase inclusion grows under a uniaxial tensile stress.
# Check the file below for comments and suggestions for parameter modifications.
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 40
  ny = 40
  nz = 0
  xmin = 0
  xmax = 50
  ymin = 0
  ymax = 50
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./eta]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = SmoothCircleIC
      x1 = 0
      y1 = 0
      radius = 30.0
      invalue = 1.0
      outvalue = 0.0
      int_width = 10.0
    [../]
  [../]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y'
  [../]

  [./eta_bulk]
    type = AllenCahn
    variable = eta
    f_name = F
  [../]
  [./eta_interface]
    type = ACInterface
    variable = eta
    kappa_name = 1
  [../]
  [./time]
    type = TimeDerivative
    variable = eta
  [../]
[]

#
# Try visualizing the stress tensor components as done in Conserved.i
#

[Materials]
  [./consts]
    type = GenericConstantMaterial
    block = 0
    prop_names  = 'L'
    prop_values = '1'
  [../]

  # matrix phase
  [./stiffness_a]
    type = ComputeElasticityTensor
    base_name = phasea
    block = 0
    # lambda, mu values
    C_ijkl = '7 7'
    # Stiffness tensor is created from lambda=7, mu=7 for symmetric_isotropic fill method
    fill_method = symmetric_isotropic
    # See RankFourTensor.h for details on fill methods
  [../]
  [./strain_a]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y'
    base_name = phasea
  [../]
  [./stress_a]
    type = ComputeLinearElasticStress
    block = 0
    base_name = phasea
  [../]
  [./elastic_free_energy_a]
    type = ElasticEnergyMaterial
    base_name = phasea
    f_name = Fea
    block = 0
    args = ''
  [../]

  # oversized precipitate phase (simulated using thermal expansion)
  [./stiffness_b]
    type = ComputeElasticityTensor
    base_name = phaseb
    block = 0
    # Stiffness tensor lambda, mu values
    # Note that the two phases could have different stiffnesses.
    # Try reducing the precipitate stiffness (to '1 1') rather than making it oversized
    C_ijkl = '7 7'
    fill_method = symmetric_isotropic
  [../]
  [./strain_b]
    type = ComputeSmallStrain
    block = 0
    displacements = 'disp_x disp_y'
    base_name = phaseb
    eigenstrain_names = eigenstrain
  [../]
  [./eigenstrain_b]
    type = ComputeEigenstrain
    base_name = phaseb
    eigen_base = '0.1 0.1 0.1'
    eigenstrain_name = eigenstrain
  [../]
  [./stress_b]
    type = ComputeLinearElasticStress
    block = 0
    base_name = phaseb
  [../]
  [./elastic_free_energy_b]
    type = ElasticEnergyMaterial
    base_name = phaseb
    f_name = Feb
    block = 0
    args = ''
  [../]

  # Generate the global free energy from the phase free energies
  [./switching]
    type = SwitchingFunctionMaterial
    block = 0
    eta = eta
    h_order = SIMPLE
  [../]
  [./barrier]
    type = BarrierFunctionMaterial
    block = 0
    eta = eta
    g_order = SIMPLE
  [../]
  [./free_energy]
    type = DerivativeTwoPhaseMaterial
    block = 0
    f_name = F
    fa_name = Fea
    fb_name = Feb
    eta = eta
    args = ''
    W = 0.1
    derivative_order = 2
  [../]

  # Generate the global stress from the phase stresses
  [./global_stress]
    type = TwoPhaseStressMaterial
    block = 0
    base_A = phasea
    base_B = phaseb
  [../]
[]

[BCs]
  [./bottom_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'bottom'
    value = 0
  [../]
  [./top_y]
    type = DirichletBC
    variable = disp_y
    boundary = 'top'
    value = 5
  [../]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 'left'
    value = 0
  [../]
[]

[Preconditioning]
  # active = ' '
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  # this gives best performance on 4 cores
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type  -sub_pc_type '
  petsc_options_value = 'asm       lu'

  l_max_its = 30
  nl_max_its = 10
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1.0e-10
  start_time = 0.0
  num_steps = 200

  [./TimeStepper]
    type = SolutionTimeAdaptiveDT
    dt = 0.2
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/multi/three_surface20.i

# Plasticit models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# A single element is stretched by 1.1E-6m in y direction and 1.7E-6 in z direction.
# trial stress_yy = 1.1 and stress_zz = 1.7
#
# Then all yield functions will activate
# However, there is linear dependence.  SimpleTester1 will be rutned off.
# The algorithm will return to
# stress_yy=0.5 and stress_zz=1
# internal0=0.1, internal2=0.6


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0E-6*x'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '1.1E-6*y'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1.7E-6*z'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./int2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./f0]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f0
  [../]
  [./f1]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f1
  [../]
  [./f2]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f2
  [../]
  [./int0]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 0
    variable = int0
  [../]
  [./int1]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 1
    variable = int1
  [../]
  [./int2]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    factor = 1E6
    index = 2
    variable = int2
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = f0
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = f1
  [../]
  [./f2]
    type = PointValue
    point = '0 0 0'
    variable = f2
  [../]
  [./int0]
    type = PointValue
    point = '0 0 0'
    variable = int0
  [../]
  [./int1]
    type = PointValue
    point = '0 0 0'
    variable = int1
  [../]
  [./int2]
    type = PointValue
    point = '0 0 0'
    variable = int2
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    max_NR_iterations = 2
    min_stepsize = 1
    debug_fspb = crash
    debug_jac_at_stress = '10 0 0 0 10 0 0 0 10'
    debug_jac_at_pm = '1 1'
    debug_jac_at_intnl = '1 1'
    debug_stress_change = 1E-5
    debug_pm_change = '1E-6 1E-6'
    debug_intnl_change = '1E-6 1E-6'
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = three_surface20
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

python/peacock/tests/common/time_data.i

###############################################################
# The following tests that the CSV output object can include an
# additional .csv file that contains the time and timestep
# data from VectorPostprocessor object.
###############################################################


[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./diff_v]
    type = Diffusion
    variable = v
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
  [./left_v]
    type = DirichletBC
    variable = v
    boundary = left
    value = 1
  [../]
  [./right_v]
    type = DirichletBC
    variable = v
    boundary = right
    value = 0
  [../]
[]

[VectorPostprocessors]
  [./line_sample]
    type = LineValueSampler
    variable = 'u v'
    start_point = '0 0.5 0'
    end_point = '1 0.5 0'
    num_points = 11
    sort_by = id
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  execute_on = 'initial timestep_end'
  file_base = 'time_data'
  [./out]
    type = CSV
    time_data = true
    interval = 2
  [../]
[]

modules/combined/test/tests/beam_eigenstrain_transfer/master_uo_transfer.i

# Test for multi app vector postprocessor to aux variable transfer

# Master App contains 2 beams, one starting at (1.5, 2.0, 2.0) and
# another starting at (2.5, 0.0, 3.0). Both beams extend for
# 0.150080 m along the y direction.

# Each subApp contains a 2D model of width 0.5 m and height 0.150080 m.
# A time varying temperature profile is assigned to each 2D model and
# the resulting yy strain along the right boundary (x = 0.5) is
# transferred to the beam model using the multi app transfer. The subApps
# are positioned in the [MultiApp] block such that the origin of the beams
# coincides with the origin of the subApp.

# For each master beam node/element, the MultiAppUserObjectTransfer finds
# the subApp where this node belongs, projects this node to the right
# boundary of the subApp and assigns the value corresponding to the
# projected point.

# Result: The y displacement of the beam should equal the y
# displacement along the right boundary of the 2D model.

[Mesh]
  type = FileMesh
  file = 2_beams_new.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = 1
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = 1
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = 1
    value = 0.0
  [../]
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1e9
    poissons_ratio = 0.3
    shear_coefficient = 1.0
    block = 1
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '1'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.5
    Ay = 0.0
    Az = 0.0
    Iy = 0.01
    Iz = 0.01
    y_orientation = '0.0 0.0 1.0'
    eigenstrain_names = 'thermal'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 1
  [../]
  [./thermal]
    type = ComputeEigenstrainBeamFromVariable
    displacement_eigenstrain_variables = 'zero1 to_var zero2'
    eigenstrain_name = thermal
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-12
  l_tol = 1e-9

  start_time = 0.0
  end_time = 0.075
  dt = 0.0125
  dtmin = 0.0001
[]

[AuxVariables]
  [./to_var]
  [../]
  [./zero1]
  [../]
  [./zero2]
  [../]
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = CombinedApp
    positions = '1.5 2.0 2.0 2.5 0.0 3.0'
    input_files = 'subapp1_uo_transfer.i subapp2_uo_transfer.i'
  [../]
[]

[Transfers]
  [./fromsub]
    type = MultiAppUserObjectTransfer
    direction = from_multiapp
    user_object = axial_str
    multi_app = sub
    variable = to_var
    all_master_nodes_contained_in_sub_app = true
  [../]
[]

[Postprocessors]
  [./pos1]
    type = PointValue
    variable = disp_y
    point = '1.5 2.150080 2.0'
  [../]
  [./pos2]
    type = PointValue
    variable = disp_y
    point = '2.5 0.150080 3.0'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/phase_field_crystal/PFCRFF_split/PFCRFF_split_test_sub.i

[GlobalParams]
  num_L = 5
  L_name_base = L
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 12
  ny = 12
  nz = 8
  xmax = 6
  ymax = 6
[]

[Variables]
  [./HHPFCRFFSplitVariables]
  [../]
[]

[AuxVariables]
  [./n]
  [../]
[]

[Kernels]
  [./HHPFCRFFSplitKernel]
    log_approach = expansion
    n_name = n
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./PFC]
    type = PFCRFFMaterial
  [../]
[]

[Postprocessors]
  [./dt]
    type = TimestepSize
  [../]
[]

[Preconditioning]
  active = 'SMP'
  [./SMP]
    type = SMP
    full = true
  [../]
  [./FDP]
    type = FDP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
  l_max_its = 50
  nl_max_its = 20
  petsc_options = '-pc_factor_shift_nonzero'
  petsc_options_iname = -pc_type
  petsc_options_value = lu
  l_tol = 1e-04
  nl_rel_tol = 1e-9
  scheme = bdf2
[]

[Outputs]
  exodus = true
[]

[ICs]
  active = ''
  [./density_IC]
    y2 = 10.5
    lc = 6
    y1 = 1.5
    min = .8
    max = .2
    x2 = 10.5
    crystal_structure = FCC
    variable = n
    x1 = 1.5
    type = PFCFreezingIC
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/random5.i

# Using CappedMohrCoulomb
# Plasticity models:
# Tensile strength = 1.5
# Compressive strength = 3.0
# Cohesion = 1.0
# Friction angle = dilation angle = 20deg
#
# Young = 1, Poisson = 0.3
#
# A line of elements is perturbed randomly, and return to the yield surface at each quadpoint is checked

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 100
  ny = 12
  nz = 1
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 12
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./Smax]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./Smid]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./Smin]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./Smax]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = Smax
    scalar_type = MaxPrincipal
  [../]
  [./Smid]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = Smid
    scalar_type = MidPrincipal
  [../]
  [./Smin]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = Smin
    scalar_type = MinPrincipal
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1.5
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 3.0
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1.0
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 3
    convert_to_radians = true
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 100
    poissons_ratio = 0.3
  [../]
  [./strain]
    type = ComputeFiniteStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./capped_mc]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    smoothing_tol = 0.2
    yield_function_tol = 1.0E-12
    max_NR_iterations = 1000
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = capped_mc
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random5
  exodus = true
[]

modules/porous_flow/test/tests/fluidstate/theis_nonisothermal.i

# Two-phase nonisothermal Theis problem: Flow from single source using WaterNCG fluidstate.
# Constant rate injection 2 kg/s of cold gas into warm reservoir
# 1D cylindrical mesh
# Initially, system has only a liquid phase, until enough gas is injected
# to form a gas phase, in which case the system becomes two phase.

[Mesh]
  [./mesh]
    type = GeneratedMeshGenerator
    dim = 1
    nx = 40
    xmin = 0.1
    xmax = 200
    bias_x = 1.05
  [../]
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = Y
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[AuxVariables]
  [./saturation_gas]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./y0]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = timestep_end
  [../]
  [./x1]
    type = PorousFlowPropertyAux
    variable = x1
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = timestep_end
  [../]
  [./y0]
    type = PorousFlowPropertyAux
    variable = y0
    property = mass_fraction
    phase = 1
    fluid_component = 0
    execute_on = timestep_end
  [../]
[]

[Variables]
  [./pgas]
    initial_condition = 20e6
  [../]
  [./zi]
    initial_condition = 0
  [../]
  [./temperature]
    initial_condition = 70
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pgas
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pgas
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = zi
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = zi
  [../]
  [./energy]
    type = PorousFlowEnergyTimeDerivative
    variable = temperature
  [../]
  [./heatadv]
    type = PorousFlowHeatAdvection
    variable = temperature
  [../]
  [./conduction]
    type = PorousFlowHeatConduction
    variable = temperature
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi temperature'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowWaterNCG
    water_fp = water
    gas_fp = methane
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./methane]
      type = MethaneFluidProperties
    [../]
    [./water]
      type = Water97FluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temperature
  [../]
  [./waterncg]
    type = PorousFlowFluidState
    gas_porepressure = pgas
    z = zi
    temperature = temperature
    temperature_unit = Celsius
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.2
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-12 0 0 0 1e-12 0 0 0 1e-12'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 0
    s_res = 0.1
    sum_s_res = 0.1
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    n = 2
    phase = 1
  [../]
  [./rockheat]
    type = PorousFlowMatrixInternalEnergy
    specific_heat_capacity = 1000
    density = 2500
  [../]
  [./rock_thermal_conductivity]
    type = PorousFlowThermalConductivityIdeal
    dry_thermal_conductivity = '50 0 0  0 50 0  0 0 50'
  [../]
[]

[BCs]
  [./cold_gas]
    type = DirichletBC
    boundary = left
    variable = temperature
    value = 20
  [../]
  [./gas_injecton]
    type = PorousFlowSink
    boundary = left
    variable = zi
    flux_function = -0.159155
  [../]
  [./rightwater]
    type = DirichletBC
    boundary = right
    value = 20e6
    variable = pgas
  [../]
  [./righttemp]
    type = DirichletBC
    boundary = right
    value = 70
    variable = temperature
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1e4
  automatic_scaling = true
  nl_abs_tol = 1e-7
  nl_rel_tol = 1e-5
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 1
    growth_factor = 1.5
  [../]
[]

[Postprocessors]
  [./pgas]
    type = PointValue
    point =  '2 0 0'
    variable = pgas
  [../]
  [./sgas]
    type = PointValue
    point =  '2 0 0'
    variable = saturation_gas
  [../]
  [./zi]
    type = PointValue
    point = '2 0 0'
    variable = zi
  [../]
  [./temperature]
    type = PointValue
    point = '2 0 0'
    variable = temperature
  [../]
  [./massgas]
    type = PorousFlowFluidMass
    fluid_component = 1
  [../]
  [./x1]
    type = PointValue
    point =  '2 0 0'
    variable = x1
  [../]
  [./y0]
    type = PointValue
    point =  '2 0 0'
    variable = y0
  [../]
[]

[Outputs]
  print_linear_residuals = false
  perf_graph = true
  csv = true
[]

test/tests/test_harness/long_running.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  uniform_refine = 5
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 4
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  perf_graph = true
[]

tutorials/darcy_thermo_mech/step07_adaptivity/problems/step7b_fine.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 3
  xmax = 0.304 # Length of test chamber
  ymax = 0.0257 # Test chamber radius
  uniform_refine = 3
[]

[Variables]
  [pressure]
  []
  [temperature]
    initial_condition = 300 # Start at room temperature
  []
[]

[AuxVariables]
  [velocity]
    order = CONSTANT
    family = MONOMIAL_VEC
  []
[]

[Kernels]
  [darcy_pressure]
    type = DarcyPressure
    variable = pressure
  []
  [heat_conduction]
    type = ADHeatConduction
    variable = temperature
  []
  [heat_conduction_time_derivative]
    type = ADHeatConductionTimeDerivative
    variable = temperature
  []
  [heat_convection]
    type = DarcyAdvection
    variable = temperature
    pressure = pressure
  []
[]

[AuxKernels]
  [velocity]
    type = DarcyVelocity
    variable = velocity
    execute_on = timestep_end
    pressure = pressure
  []
[]

[BCs]
  [inlet]
    type = DirichletBC
    variable = pressure
    boundary = left
    value = 4000 # (Pa) From Figure 2 from paper.  First data point for 1mm spheres.
  []
  [outlet]
    type = DirichletBC
    variable = pressure
    boundary = right
    value = 0 # (Pa) Gives the correct pressure drop from Figure 2 for 1mm spheres
  []
  [inlet_temperature]
    type = FunctionDirichletBC
    variable = temperature
    boundary = left
    function = 'if(t<0,350+50*t,350)'
  []
  [outlet_temperature]
    type = HeatConductionOutflow
    variable = temperature
    boundary = right
  []
[]

[Materials]
  [column]
    type = PackedColumn
    radius = 1
    temperature = temperature
  []
[]

[Problem]
  type = FEProblem
  coord_type = RZ
  rz_coord_axis = X
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  automatic_scaling = true

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  end_time = 100
  dt = 0.25
  start_time = -1

  steady_state_tolerance = 1e-5
  steady_state_detection = true

  [TimeStepper]
    type = FunctionDT
    function = 'if(t<0,0.1,0.25)'
  []
[]

[Outputs]
  exodus = true
[]

modules/heat_conduction/test/tests/heat_conduction/3d_quadrature_gap_heat_transfer/moving.i

[Mesh]
  file = nonmatching.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./temp]
  [../]
[]

[AuxVariables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Functions]
  [./disp_y]
    type = ParsedFunction
    value = 0.1*t
  [../]
  [./left_temp]
    type = ParsedFunction
    value = 1000+t
  [../]
[]

[Kernels]
  [./hc]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./disp_y]
    type = FunctionAux
    variable = disp_y
    function = disp_y
    block = left
  [../]
[]

[BCs]
  [./left]
    type = FunctionDirichletBC
    variable = temp
    boundary = leftleft
    function = left_temp
  [../]
  [./right]
    type = DirichletBC
    variable = temp
    boundary = rightright
    value = 400
  [../]
[]

[ThermalContact]
  [./left_to_right]
    type = GapHeatTransfer
    variable = temp
    master = rightleft
    slave = leftright
    quadrature = true
  [../]
[]

[Materials]
  [./hcm]
    type = HeatConductionMaterial
    block = 'left right'
    specific_heat = 1
    thermal_conductivity = 1
    use_displaced_mesh = true
  [../]
[]

[Postprocessors]
  [./left]
    type = SideFluxIntegral
    variable = temp
    boundary = leftright
    diffusivity = thermal_conductivity
  [../]
  [./right]
    type = SideFluxIntegral
    variable = temp
    boundary = rightleft
    diffusivity = thermal_conductivity
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 9
  dt = 1

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/examples/lava_lamp/2phase_convection.i

# Two phase density-driven convection of dissolved CO2 in brine
#
# Initially, the model has a gas phase at the top with a saturation of 0.29
# (which corresponds to an initial value of zi = 0.2).
# Diffusion of the dissolved CO2
# component from the saturated liquid to the unsaturated liquid below reduces the
# amount of CO2 in the gas phase. As the density of the CO2-saturated brine is greater
# than the unsaturated brine, a gravitational instability arises and density-driven
# convection of CO2-rich fingers descend into the unsaturated brine.
#
# The instability is seeded by a random perturbation to the porosity field.
# Mesh adaptivity is used to refine the mesh as the fingers form.

[GlobalParams]
  PorousFlowDictator = 'dictator'
  gravity = '0 -9.81 0'
[]

[Adaptivity]
  max_h_level = 2
  marker = marker
  initial_marker = initial
  initial_steps = 2
  [./Indicators]
    [./indicator]
      type = GradientJumpIndicator
      variable = zi
    [../]
  [../]
  [./Markers]
    [./marker]
      type = ErrorFractionMarker
      indicator = indicator
      refine = 0.8
    [../]
    [./initial]
      type = BoxMarker
      bottom_left = '0 1.95 0'
      top_right = '2 2 0'
      inside = REFINE
      outside = DO_NOTHING
    [../]
  [../]
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  ymax = 2
  xmax = 2
  ny = 40
  nx = 40
  bias_y = 0.95
[]

[AuxVariables]
  [./xnacl]
    initial_condition = 0.01
  [../]
  [./saturation_gas]
    order = FIRST
    family = MONOMIAL
  [../]
  [./xco2l]
    order = FIRST
    family = MONOMIAL
  [../]
  [./density_liquid]
    order = FIRST
    family = MONOMIAL
  [../]
  [./porosity]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./saturation_gas]
    type = PorousFlowPropertyAux
    variable = saturation_gas
    property = saturation
    phase = 1
    execute_on = 'timestep_end'
  [../]
  [./xco2l]
    type = PorousFlowPropertyAux
    variable = xco2l
    property = mass_fraction
    phase = 0
    fluid_component = 1
    execute_on = 'timestep_end'
  [../]
  [./density_liquid]
    type = PorousFlowPropertyAux
    variable = density_liquid
    property = density
    phase = 0
    execute_on = 'timestep_end'
  [../]
[]

[Variables]
  [./pgas]
  [../]
  [./zi]
    scaling = 1e4
  [../]
[]

[ICs]
  [./pressure]
    type = FunctionIC
    function = 10e6-9.81*1000*y
    variable = pgas
  [../]
  [./zi]
    type = BoundingBoxIC
    variable = zi
    x1 = 0
    x2 = 2
    y1 = 1.95
    y2 = 2
    inside = 0.2
    outside = 0
  [../]
  [./porosity]
    type = RandomIC
    variable = porosity
    min = 0.25
    max = 0.275
  [../]
[]

[Kernels]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = pgas
  [../]
  [./flux0]
    type = PorousFlowAdvectiveFlux
    fluid_component = 0
    variable = pgas
  [../]
  [./diff0]
    type = PorousFlowDispersiveFlux
    fluid_component = 0
    variable = pgas
    disp_long = '0 0'
    disp_trans = '0 0'
  [../]
  [./mass1]
    type = PorousFlowMassTimeDerivative
    fluid_component = 1
    variable = zi
  [../]
  [./flux1]
    type = PorousFlowAdvectiveFlux
    fluid_component = 1
    variable = zi
  [../]
  [./diff1]
    type = PorousFlowDispersiveFlux
    fluid_component = 1
    variable = zi
    disp_long = '0 0'
    disp_trans = '0 0'
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'pgas zi'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
    pc = 0
  [../]
  [./fs]
    type = PorousFlowBrineCO2
    brine_fp = brine
    co2_fp = co2
    capillary_pressure = pc
  [../]
[]

[Modules]
  [./FluidProperties]
    [./co2sw]
      type = CO2FluidProperties
    [../]
    [./co2]
      type = TabulatedFluidProperties
      fp = co2sw
    [../]
    [./brine]
      type = BrineFluidProperties
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = '45'
  [../]
  [./brineco2]
    type = PorousFlowFluidState
    gas_porepressure = 'pgas'
    z = 'zi'
    temperature_unit = Celsius
    xnacl = 'xnacl'
    capillary_pressure = pc
    fluid_state = fs
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = porosity
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1e-11 0 0 0 1e-11 0 0 0 1e-11'
  [../]
  [./relperm_water]
    type = PorousFlowRelativePermeabilityCorey
    phase = 0
    n = 2
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./relperm_gas]
    type = PorousFlowRelativePermeabilityCorey
    phase = 1
    n = 2
    s_res = 0.1
    sum_s_res = 0.2
  [../]
  [./diffusivity]
    type = PorousFlowDiffusivityConst
    diffusion_coeff = '2e-9 2e-9 2e-9 2e-9'
    tortuosity = '1 1'
  [../]
[]

[Preconditioning]
  active = basic
  [./mumps_is_best_for_parallel_jobs]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
  [./basic]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = 'gmres      asm      lu           NONZERO                   2             '
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  end_time = 1e6
  nl_max_its = 25
  l_max_its = 100
  dtmax = 1e4
  nl_abs_tol = 1e-6
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 10
    growth_factor = 2
    cutback_factor = 0.5
  [../]
[]

[Functions]
  [./flux]
    type = ParsedFunction
    vals = 'delta_xco2 dt'
    vars = 'dx dt'
    value = 'dx/dt'
  [../]
[]

[Postprocessors]
  [./total_co2_in_gas]
    type = PorousFlowFluidMass
    phase = 1
    fluid_component = 1
  [../]
  [./total_co2_in_liquid]
    type = PorousFlowFluidMass
    phase = 0
    fluid_component = 1
  [../]
  [./numdofs]
    type = NumDOFs
  [../]
  [./delta_xco2]
    type = ChangeOverTimePostprocessor
    postprocessor = total_co2_in_liquid
  [../]
  [./dt]
    type = TimestepSize
  [../]
  [./flux]
    type = FunctionValuePostprocessor
    function = flux
  [../]
[]

[Outputs]
  print_linear_residuals = false
  perf_graph = true
  exodus = true
  csv = true
[]

modules/tensor_mechanics/test/tests/visco/visco_small_strain.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  elem_type = HEX8
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./creep_strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    variable = stress_xx
    rank_two_tensor = stress
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./strain_xx]
    type = RankTwoAux
    variable = strain_xx
    rank_two_tensor = total_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
  [./creep_strain_xx]
    type = RankTwoAux
    variable = creep_strain_xx
    rank_two_tensor = creep_strain
    index_j = 0
    index_i = 0
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./symmy]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0
  [../]
  [./symmx]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./symmz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0
  [../]
  [./axial_load]
    type = NeumannBC
    variable = disp_x
    boundary = right
    value    = 10e6
  [../]
[]

[Materials]
  [./kelvin_voigt]
    type = GeneralizedKelvinVoigtModel
    creep_modulus = '10e9 10e9'
    creep_viscosity = '1 10'
    poisson_ratio = 0.2
    young_modulus = 10e9
  [../]
  [./stress]
    type = ComputeLinearViscoelasticStress
  [../]
  [./strain]
    type = ComputeSmallStrain
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./update]
    type = LinearViscoelasticityManager
    viscoelastic_model = kelvin_voigt
  [../]
[]

[Postprocessors]
  [./stress_xx]
    type = ElementAverageValue
    variable = stress_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
  [./creep_strain_xx]
    type = ElementAverageValue
    variable = creep_strain_xx
    block = 'ANY_BLOCK_ID 0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  l_max_its  = 100
  l_tol      = 1e-8
  nl_max_its = 50
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-8

  dtmin = 0.01
  end_time = 100
  [./TimeStepper]
    type = LogConstantDT
    first_dt = 0.1
    log_dt = 0.1
  [../]

[]

[Outputs]
  file_base = visco_small_strain_out
  exodus = true
[]

modules/phase_field/test/tests/rigidbodymotion/grain_motion.i

# test file for applyting advection term and observing rigid body motion of grains
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 25
  ny = 15
  nz = 0
  xmax = 50
  ymax = 25
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
  [./w]
    order = FIRST
    family = LAGRANGE
  [../]
  [./eta]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
    args = eta
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
  [./motion]
    type = MultiGrainRigidBodyMotion
    variable = w
    c = c
    v = eta
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
  [./eta_dot]
    type = TimeDerivative
    variable = eta
  [../]
  [./vadv_eta]
    type = SingleGrainRigidBodyMotion
    variable = eta
    c = c
    v = eta
    grain_tracker_object = grain_center
    grain_force = grain_force
    grain_volumes = grain_volumes
  [../]
  [./acint_eta]
    type = ACInterface
    variable = eta
    mob_name = M
    args = c
    kappa_name = kappa_eta
  [../]
  [./acbulk_eta]
    type = AllenCahn
    variable = eta
    mob_name = M
    f_name = F
    args = c
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names = 'M    kappa_c  kappa_eta'
    prop_values = '5.0  2.0      0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    args = 'c eta'
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2+(c-eta)^2
    derivative_order = 2
  [../]
[]

[VectorPostprocessors]
  [./forces]
    type = GrainForcesPostprocessor
    grain_force = grain_force
  [../]
  [./grain_volumes]
    type = FeatureVolumeVectorPostprocessor
    flood_counter = grain_center
    execute_on = 'initial timestep_begin'
  [../]
[]

[UserObjects]
  [./grain_center]
    type = GrainTracker
    variable = eta
    outputs = none
    compute_var_to_feature_map = true
    execute_on = 'initial timestep_begin'
  [../]
  [./grain_force]
    type = ConstantGrainForceAndTorque
    execute_on = 'linear nonlinear'
    force = '0.5 0.0 0.0 '
    torque = '0.0 0.0 10.0 '
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  nl_max_its = 30
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  dt = 0.2
  num_steps = 1
[]

[Outputs]
  exodus = true
[]

[ICs]
  [./rect_c]
    y2 = 20.0
    y1 = 5.0
    inside = 1.0
    x2 = 30.0
    variable = c
    x1 = 10.0
    type = BoundingBoxIC
  [../]
  [./rect_eta]
    y2 = 20.0
    y1 = 5.0
    inside = 1.0
    x2 = 30.0
    variable = eta
    x1 = 10.0
    type = BoundingBoxIC
  [../]
[]

modules/combined/test/tests/phase_field_fracture/crack2d_computeCrackedStress_finitestrain_plastic.i

#This input uses PhaseField-Nonconserved Action to add phase field fracture bulk rate kernels
[Mesh]
  [gen]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 40
    ny = 20
    ymax = 0.5
  []
  [./noncrack]
    type = BoundingBoxNodeSetGenerator
    new_boundary = noncrack
    bottom_left = '0.5 0 0'
    top_right = '1 0 0'
    input = gen
  [../]
[]

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[AuxVariables]
  [./strain_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./elastic_strain_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./plastic_strain_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./uncracked_stress_yy]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Modules]
  [./TensorMechanics]
    [./Master]
      [./All]
        add_variables = true
        strain = FINITE
        planar_formulation = PLANE_STRAIN
        additional_generate_output = 'stress_yy vonmises_stress'
        strain_base_name = uncracked
      [../]
    [../]
  [../]
  [./PhaseField]
    [./Nonconserved]
      [./c]
        free_energy = E_el
        kappa = kappa_op
        mobility = L
      [../]
    [../]
  [../]
[]

[Kernels]
  [./solid_x]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_x
    component = 0
    c = c
  [../]
  [./solid_y]
    type = PhaseFieldFractureMechanicsOffDiag
    variable = disp_y
    component = 1
    c = c
  [../]
  [./off_disp]
    type = AllenCahnElasticEnergyOffDiag
    variable = c
    displacements = 'disp_x disp_y'
    mob_name = L
  [../]
[]

[AuxKernels]
  [./strain_yy]
    type = RankTwoAux
    variable = strain_yy
    rank_two_tensor = uncracked_mechanical_strain
    index_i = 1
    index_j = 1
    execute_on = TIMESTEP_END
  [../]
  [./elastic_strain_yy]
    type = RankTwoAux
    variable = elastic_strain_yy
    rank_two_tensor = uncracked_elastic_strain
    index_i = 1
    index_j = 1
    execute_on = TIMESTEP_END
  [../]
  [./plastic_strain_yy]
    type = RankTwoAux
    variable = plastic_strain_yy
    rank_two_tensor = uncracked_plastic_strain
    index_i = 1
    index_j = 1
    execute_on = TIMESTEP_END
  [../]
  [./uncracked_stress_yy]
    type = RankTwoAux
    variable = uncracked_stress_yy
    rank_two_tensor = uncracked_stress
    index_i = 1
    index_j = 1
    execute_on = TIMESTEP_END
  [../]
[]

[BCs]
  [./ydisp]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = top
    function = 't'
  [../]
  [./yfix]
    type = DirichletBC
    variable = disp_y
    boundary = noncrack
    value = 0
  [../]
  [./xfix]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0
  [../]
[]

[Functions]
  [./hf]
    type = PiecewiseLinear
    x = '0    0.001 0.003 0.023'
    y = '0.85 1.0   1.25  1.5'
  [../]
[]

[Materials]
  [./pfbulkmat]
    type = GenericConstantMaterial
    prop_names = 'gc_prop l visco'
    prop_values = '1e-3 0.05 5e-3'
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '120.0 80.0'
    fill_method = symmetric_isotropic
    base_name = uncracked
  [../]
  [./isotropic_plasticity]
    type = IsotropicPlasticityStressUpdate
    yield_stress = 0.85
    hardening_function = hf
    base_name = uncracked
  [../]
  [./radial_return_stress]
    type = ComputeMultipleInelasticStress
    tangent_operator = elastic
    inelastic_models = 'isotropic_plasticity'
    base_name = uncracked
  [../]
  [./cracked_stress]
    type = ComputeCrackedStress
    c = c
    F_name = E_el
    use_current_history_variable = true
    uncracked_base_name = uncracked
    finite_strain_model = true
  [../]
[]

[Postprocessors]
  [./av_stress_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./av_strain_yy]
    type = SideAverageValue
    variable = disp_y
    boundary = top
  [../]
  [./av_uncracked_stress_yy]
    type = ElementAverageValue
    variable = uncracked_stress_yy
  [../]
  [./max_c]
    type = ElementExtremeValue
    variable = c
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_factor_mat_solving_package'
  petsc_options_value = 'lu superlu_dist'

  nl_rel_tol = 1e-8
  l_tol = 1e-4
  l_max_its = 100
  nl_max_its = 10

  dt = 2.0e-5
  num_steps = 2
[]

[Outputs]
  exodus = true
[]

modules/combined/test/tests/ad_power_law_creep/power_law_creep_restart2.i

# 1x1x1 unit cube with uniform pressure on top face

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 1000.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    incremental = true
    add_variables = true
    generate_output = 'stress_yy creep_strain_xx creep_strain_yy creep_strain_zz elastic_strain_yy'
    use_automatic_differentiation = true
  [../]
[]

[Functions]
  [./top_pull]
    type = PiecewiseLinear
    x = '0 1'
    y = '1 1'
  [../]
[]

[Kernels]
  [./heat]
    type = ADHeatConduction
    variable = temp
  [../]
  [./heat_ie]
    type = ADHeatConductionTimeDerivative
    variable = temp
  [../]
[]

[BCs]
  [./u_top_pull]
    type = ADPressure
    variable = disp_y
    component = 1
    boundary = top
    constant = -10.0e6
    function = top_pull
  [../]
  [./u_bottom_fix]
    type = ADDirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./u_yz_fix]
    type = ADDirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./u_xy_fix]
    type = ADDirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
  [./temp_fix]
    type = DirichletBC
    variable = temp
    boundary = 'bottom top'
    value = 1000.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2e11
    poissons_ratio = 0.3
  [../]
  [./radial_return_stress]
    type = ADComputeMultipleInelasticStress
    inelastic_models = 'power_law_creep'
  [../]
  [./power_law_creep]
    type = ADPowerLawCreepStressUpdate
    coefficient = 1.0e-15
    n_exponent = 4
    activation_energy = 3.0e5
    temperature = temp
  [../]

  [./thermal]
    type = HeatConductionMaterial
    specific_heat = 1.0
    thermal_conductivity = 100.
  [../]
  [./density]
    type = ADDensity
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '101'

  line_search = 'none'

  l_max_its = 20
  nl_max_its = 20
  nl_rel_tol = 1e-6
  nl_abs_tol = 1e-6
  l_tol = 1e-5
  start_time = 0.6
  end_time = 1.0
  num_steps = 12
  dt = 0.1
[]

[Outputs]
  file_base = power_law_creep_out
  exodus = true
[]

[Problem]
  restart_file_base = power_law_creep_restart1_out_cp/0006
[]

test/tests/outputs/vtk/vtk_diff.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./aux]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  vtk = true
[]

modules/porous_flow/test/tests/jacobian/eff_stress03.i

# 2phase (PP)
# vanGenuchten, constant-bulk density for each phase, constant porosity, 2components (that exist in both phases)
# unsaturated
# RZ coordinates
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 1
  ny = 1
[]

[Problem]
  coord_type = RZ
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Variables]
  [./ppwater]
  [../]
  [./ppgas]
  [../]
[]

[AuxVariables]
  [./massfrac_ph0_sp0]
  [../]
  [./massfrac_ph1_sp0]
  [../]
[]

[ICs]
  [./ppwater]
    type = RandomIC
    variable = ppwater
    min = -1
    max = 0
  [../]
  [./ppgas]
    type = RandomIC
    variable = ppgas
    min = 0
    max = 1
  [../]
  [./massfrac_ph0_sp0]
    type = RandomIC
    variable = massfrac_ph0_sp0
    min = 0
    max = 1
  [../]
  [./massfrac_ph1_sp0]
    type = RandomIC
    variable = massfrac_ph1_sp0
    min = 0
    max = 1
  [../]
[]


[Kernels]
  [./grad0]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 0
    variable = ppwater
  [../]
  [./grad1]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.3
    component = 1
    variable = ppgas
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'ppwater ppgas'
    number_fluid_phases = 2
    number_fluid_components = 2
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.5
    alpha = 1
  [../]
[]

[Materials]
  [./ppss]
    type = PorousFlow2PhasePP
    phase0_porepressure = ppwater
    phase1_porepressure = ppgas
    capillary_pressure = pc
  [../]
  [./p_eff]
    type = PorousFlowEffectiveFluidPressure
  [../]
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1
  end_time = 1
[]

test/tests/functions/coarsened_piecewise_linear/coarsened_piecewise_linear.i

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./dummy]
  [../]
[]

[Problem]
  solve = false
  kernel_coverage_check = false
[]

[Functions]
  [./input]
    type = CoarsenedPiecewiseLinear
    data_file = input.csv
    format = columns
    epsilon = 0.1
    x_scale = 0.03
  [../]
[]

[VectorPostprocessors]
  [./F]
    type = PiecewiseFunctionTabulate
    function = input
    execute_on = INITIAL
    outputs = vpp
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  [./vpp]
    type = CSV
    execute_vector_postprocessors_on = INITIAL
  [../]
[]

modules/tensor_mechanics/test/tests/radial_disp_aux/sphere_3d_cartesian.i

# The purpose of this set of tests is to check the values computed
# by the RadialDisplacementAux AuxKernel. They should match the
# radial component of the displacment for a cylindrical or spherical
# model.
# This particular model is of a sphere subjected to uniform thermal
# expansion represented using a 3D Cartesian model.

[Mesh]
  type = FileMesh
  file = sphere_sector_3d.e
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  order = SECOND
  family = LAGRANGE
[]

[AuxVariables]
  [./temp]
  [../]
  [./rad_disp]
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t+300.0
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    strain = FINITE
    add_variables = true
    eigenstrain_names = eigenstrain
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
    use_displaced_mesh = false
  [../]
  [./raddispaux]
    type = RadialDisplacementSphereAux
    variable = rad_disp
    origin = '0 0 0'
  [../]
[]

[BCs]
  [./x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./z]
    type = DirichletBC
    variable = disp_z
    boundary = 3
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 300
    thermal_expansion_coeff = 1.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-ksp_gmres_restart'
  petsc_options_value = '51'

  line_search = 'none'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10

  start_time = 0.0
  end_time = 1
  dt = 1
  dtmin = 1
[]

[Outputs]
 csv = true
 exodus = true
[]

#[Postprocessors]
#  [./strain_xx]
#    type = SideAverageValue
#    variable =
#    block = 0
#  [../]
#[]

modules/tensor_mechanics/test/tests/weak_plane_shear/small_deform_harden2.i

# apply a pure tension, then some shear with compression
# the BCs are designed to map out the yield function, showing
# the affect of the hardening
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./x_disp]
  [../]
  [./y_disp]
  [../]
  [./z_disp]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'x_disp y_disp z_disp'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = x_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = y_disp
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = z_disp
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = FunctionDirichletBC
    variable = x_disp
    boundary = front
    function = 'if(t<1E-6,0,3*t)'
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = y_disp
    boundary = front
    function = 'if(t<1E-6,0,5*(t-0.01E-6))'
  [../]
  [./topz]
    type = FunctionDirichletBC
    variable = z_disp
    boundary = front
    function = 'if(t<1E-6,t,2E-6-t)'
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./wps_internal]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./wps_internal_auxk]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = wps_internal
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./int]
    type = PointValue
    point = '0 0 0'
    variable = wps_internal
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningGaussian
    value_0 = 1E3
    value_residual = 700
    rate = 2E16
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningGaussian
    value_0 = 1
    value_residual = 0.577350269
    rate = 2E16
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningGaussian
    value_0 = 0.0874886635
    value_residual = 0.01745506
    rate = 2E16
  [../]
  [./wps]
    type = TensorMechanicsPlasticWeakPlaneShear
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    smoother = 500
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-3
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '1E9 0.5E9'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'x_disp y_disp z_disp'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wps
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-3
    max_NR_iterations = 100
    min_stepsize = 1
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 2E-6
  dt = 1E-7
  type = Transient
[]


[Outputs]
  file_base = small_deform_harden2
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

test/tests/time_steppers/zero_dt/test.i

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  dt = 0
[]

test/tests/materials/output/block_via_outputs.i

[Mesh]
  type = FileMesh
  file = rectangle.e
  dim = 2
  uniform_refine = 1
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 10
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = 2
    value = 1
  [../]
[]

[Materials]
  [./block_1]
    type = OutputTestMaterial
    block = 1
    variable = u
  [../]
  [./block_2]
    type = OutputTestMaterial
    block = 2
    variable = u
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  [./out]
    type = Exodus
    output_material_properties = true
    show_material_properties = real_property
  [../]
[]

test/tests/geomsearch/3d_moving_penetration/pl_test2q.i

[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = pl_test2q.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./distance]
  [../]
  [./tangential_distance]
  [../]
  [./normal_x]
  [../]
  [./normal_y]
  [../]
  [./normal_z]
  [../]
  [./closest_point_x]
  [../]
  [./closest_point_y]
  [../]
  [./closest_point_z]
  [../]
  [./element_id]
  [../]
  [./side]
  [../]
[]

[Kernels]
  [./diff_x]
    type = Diffusion
    variable = disp_x
  [../]
  [./diff_y]
    type = Diffusion
    variable = disp_y
  [../]
  [./diff_z]
    type = Diffusion
    variable = disp_z
  [../]
[]

[AuxKernels]
  [./penetrate]
    type = PenetrationAux
    variable = distance
    boundary = 11            #slave
    paired_boundary = 12     #master
  [../]

  [./penetrate2]
    type = PenetrationAux
    variable = distance
    boundary = 12            #slave
    paired_boundary = 11     #master
  [../]

  [./penetrate3]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 11
    paired_boundary = 12
    quantity = tangential_distance
  [../]

  [./penetrate4]
    type = PenetrationAux
    variable = tangential_distance
    boundary = 12
    paired_boundary = 11
    quantity = tangential_distance
  [../]

  [./penetrate5]
    type = PenetrationAux
    variable = normal_x
    boundary = 11
    paired_boundary = 12
    quantity = normal_x
  [../]

  [./penetrate6]
    type = PenetrationAux
    variable = normal_x
    boundary = 12
    paired_boundary = 11
    quantity = normal_x
  [../]

  [./penetrate7]
    type = PenetrationAux
    variable = normal_y
    boundary = 11
    paired_boundary = 12
    quantity = normal_y
  [../]

  [./penetrate8]
    type = PenetrationAux
    variable = normal_y
    boundary = 12
    paired_boundary = 11
    quantity = normal_y
  [../]

  [./penetrate9]
    type = PenetrationAux
    variable = normal_z
    boundary = 11
    paired_boundary = 12
    quantity = normal_z
  [../]

  [./penetrate10]
    type = PenetrationAux
    variable = normal_z
    boundary = 12
    paired_boundary = 11
    quantity = normal_z
  [../]

  [./penetrate11]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_x
  [../]

  [./penetrate12]
    type = PenetrationAux
    variable = closest_point_x
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_x
  [../]

  [./penetrate13]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_y
  [../]

  [./penetrate14]
    type = PenetrationAux
    variable = closest_point_y
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_y
  [../]

  [./penetrate15]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 11
    paired_boundary = 12
    quantity = closest_point_z
  [../]

  [./penetrate16]
    type = PenetrationAux
    variable = closest_point_z
    boundary = 12
    paired_boundary = 11
    quantity = closest_point_z
  [../]

  [./penetrate17]
    type = PenetrationAux
    variable = element_id
    boundary = 11
    paired_boundary = 12
    quantity = element_id
  [../]

  [./penetrate18]
    type = PenetrationAux
    variable = element_id
    boundary = 12
    paired_boundary = 11
    quantity = element_id
  [../]

  [./penetrate19]
    type = PenetrationAux
    variable = side
    boundary = 11
    paired_boundary = 12
    quantity = side
  [../]

  [./penetrate20]
    type = PenetrationAux
    variable = side
    boundary = 12
    paired_boundary = 11
    quantity = side
  [../]
[]

[BCs]
  [./b1x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]

  [./b1y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./b1z]
    type = DirichletBC
    variable = disp_z
    boundary = 1
    value = 0
  [../]

  [./b2x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0
  [../]

  [./b2y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 2
    function = disp_y
  [../]

  [./b2z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0
  [../]
[]

[Functions]
  [./disp_y]
    type = PiecewiseLinear
    x = '0.0 0.25 0.75 1.0'
    y = '0.0 0.7 -0.7  0.0'
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options = '-snes_ksp_ew'

  nl_abs_tol = 1e-7
  l_max_its = 10

  start_time = 0.0
  dt = 0.05
  end_time = 1.0
  [./Quadrature]
    order = THIRD
  [../]
[]

[Outputs]
  file_base = pl_test2q_out
  exodus = true
[]

modules/phase_field/test/tests/Nucleation/parallel.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 100
  ny = 100
  nz = 0
  xmin = 0
  xmax = 20
  ymin = 0
  ymax = 20
[]

[GlobalParams]
  derivative_order = 2
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Kernels]
  [./c]
    type = Diffusion
    variable = c
  [../]
  [./dt]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./nucleation]
    type = DiscreteNucleation
    op_names  = c
    op_values = 1
    map = map
  [../]
[]

[UserObjects]
  [./inserter]
    type = DiscreteNucleationInserter
    hold_time = 1
    probability = 0.01
  [../]
  [./map]
    type = DiscreteNucleationMap
    radius = 4
    periodic = c
    inserter = inserter
  [../]
[]

[Postprocessors]
  [./sum]
    type = ElementIntegralMaterialProperty
    mat_prop = F
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 10
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  [./out]
    type = CSV
  [../]
[]

modules/porous_flow/test/tests/chemistry/except8.i

# Exception test.
# Incorrect number of reactive surface areas

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
  [../]
  [./b]
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = Diffusion
    variable = a
  [../]
  [./b]
    type = Diffusion
    variable = b
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
    [../]
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1E-6
  [../]
  [./pressure]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '1 1'
    reactions = '1 1'
    specific_reactive_surface_area = '1.0 1.0'
    kinetic_rate_constant = '1.0e-8'
    activation_energy = '1.5e4'
    molar_volume = 1
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
  [../]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
[]

modules/porous_flow/test/tests/jacobian/chem07.i

# PorousFlowPreDis, which is essentially checking the derivatives of the secondary concentrations in PorousFlowMassFractionAqueousPreDisChemistry
# Dissolution with no temperature dependence, with two primary variables = 0
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.0
  [../]
  [./b]
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 1.234
  [../]
  [./temp]
    initial_condition = 0.5
  [../]
  [./ini_sec_conc]
    initial_condition = 0.222
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./a]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1E5
    stoichiometry = 2
  [../]
  [./b]
    type = PorousFlowPreDis
    variable = b
    mineral_density = 2.2E5
    stoichiometry = 3
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'a b'
    number_fluid_phases = 1
    number_fluid_components = 3
    number_aqueous_kinetic = 1
  [../]
[]

[AuxVariables]
  [./pressure]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.9
  [../]
  [./temperature]
    type = PorousFlowTemperature
    temperature = temp
  [../]
  [./ppss]
    type = PorousFlow1PhaseFullySaturated
    porepressure = pressure
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'a b'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = 'a b'
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = '0.5 0.8'
    reactions = '1 3'
    specific_reactive_surface_area = -44.4E-2
    kinetic_rate_constant = 0.678
    activation_energy = 4.4
    molar_volume = 3.3
    reference_temperature = 1
    gas_constant = 7.4
    theta_exponent = 1.0
    eta_exponent = 1.2
  [../]
  [./mineral]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_sec_conc
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 0.1
  end_time = 0.1
[]

[Preconditioning]
  [./check]
    type = SMP
    full = true
    petsc_options = '-snes_test_display'
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

modules/xfem/test/tests/single_var_constraint_3d/stationary_jump_fluxjump_3d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.25
  elem_type = HEX8
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./square_planar_cut_uo]
    type = RectangleCutUserObject
    cut_data = ' 0.5 -0.001 -0.001
                 0.5  1.001 -0.001
                 0.5  1.001  1.001
                 0.5 -0.001  1.001'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0.5
    jump_flux = 1
    geometric_cut_userobject = 'square_planar_cut_uo'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/phase_field/test/tests/initial_conditions/SmoothSuperellipsoidIC_3D.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 15
  ny = 15
  nz = 15
  xmax = 50
  ymax = 50
  zmax = 50
  elem_type = HEX8
[]

[Variables]
  [./c]
  [../]
[]

[ICs]
  [./c]
    type = SmoothSuperellipsoidIC
    variable = c
    x1 = 25.0
    y1 = 25.0
    z1 = 25.0
    a = 8
    b = 12
    c = 16
    n = 3.5
    invalue = 1.0
    outvalue = 0
    int_width = 4.0
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./Diffusion]
    type = MatDiffusion
    variable = c
  [../]
[]

[BCs]
  [./Periodic]
    [./All]
      auto_direction = 'x y z'
    [../]
  [../]
[]

[Materials]
  [./Diffusivity]
    type = GenericConstantMaterial
    prop_names = D
    prop_values = 1.0
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2

  solve_type = 'NEWTON'
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'

  l_max_its = 20
  l_tol = 1.0e-5
  nl_max_its = 40
  nl_rel_tol = 5.0e-14

  start_time = 0.0
  num_steps = 1
  dt = 2.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/capped_drucker_prager/small_deform3_inner_tip.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-1.7E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E5
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1E5
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPrager
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    mc_interpolation_scheme = inner_tip
    yield_function_tolerance = 1      # irrelevant here
    internal_constraint_tolerance = 1 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = mc
    perform_finite_strain_rotations = false
  [../]
  [./mc]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-8
    tip_smoother = 8
    smoothing_tol = 1E-7
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3_inner_tip
  exodus = false
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/gravity/gravity_qp_select.i

# Gravity Test
#
# This test is similar to the other gravity tests, but it also tests the
# capability in MaterialTensorAux to return the stress of a single,
# specified integration point, rather than the element average.
# To get the stress at a single integration point, set the parameter
# qp_select to the integration point number (i.e. 0-9 for a quad 8)
# in the AuxKernel
#
# The mesh for this problem is a unit square.
#
# The boundary conditions for this problem are as follows.  The
#   displacement is zero on each of side that faces a negative
#   coordinate direction.  The acceleration of gravity is 20.
#
# The material has a Young's modulus of 1e6 and a density of 2.
#
# The analytic solution for the displacement along the bar is:
#
# u(x) = -b*x^2/(2*E)+b*L*x/E
#
# The displacement at x=L is b*L^2/(2*E) = 2*20*1*1/(2*1e6) = 0.00002.
#
# The analytic solution for the stress along the bar assuming linear
#   elasticity is:
#
# S(x) = b*(L-x)
#
# The stress at x=0 is b*L = 2*20*1 = 40.
#
# Note:  The isoparametric coordinate for a quad8 (fourth order) element
# is: +/- 0.77459667 and 0.  For a 1 unit square with the edge of
# the element in the x = 0 plane, there would be an integration point
# at x_coordinate 0.5 - 0.5*0.77459667 (0.11270167), 0.5, and
# 0.50 + 0.5*0.77459667 (0.88729834).
#
# The corresponding stresses are:
#
# S(0.11270167) = 40(1-0.11270167) = 35.491933
# S(0.5) = 40(1-0.5) = 20
# S(0.88729834) = 40(1-0.88729834) = 4.5080664
#
# These stresses are a precise match to the simulation result.
#

[GlobalParams]
  displacements = 'disp_x disp_y'
  order = SECOND
  family = LAGRANGE
[]

[Mesh]
  file = gravity_2D.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx_qp_0]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_1]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_2]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_3]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_4]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_5]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_6]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_7]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xx_qp_8]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Modules/TensorMechanics/Master/All]
  strain = FINITE
  #incremental = true
  add_variables = true
  generate_output = 'stress_xx'
[]

[Kernels]
  [./gravity]
    type = Gravity
    variable = disp_x
    value = 20
  [../]
[]

[AuxKernels]
  [./stress_xx_qp_0]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx_qp_0
    index_i = 0
    index_j = 0
    selected_qp = 0
  [../]
  [./stress_xx_qp_1]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx_qp_1
    index_i = 0
    index_j = 0
    selected_qp = 1
  [../]
  [./stress_xx_qp_2]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx_qp_2
    index_i = 0
    index_j = 0
    selected_qp = 2
  [../]
  [./stress_xx_qp_3]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx_qp_3
    index_i = 0
    index_j = 0
    selected_qp = 3
  [../]
  [./stress_xx_qp_4]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx_qp_4
    index_i = 0
    index_j = 0
    selected_qp = 4
  [../]
  [./stress_xx_qp_5]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx_qp_5
    index_i = 0
    index_j = 0
    selected_qp = 5
  [../]
  [./stress_xx_qp_6]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx_qp_6
    index_i = 0
    index_j = 0
    selected_qp = 6
  [../]
  [./stress_xx_qp_7]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx_qp_7
    index_i = 0
    index_j = 0
    selected_qp = 7
  [../]
  [./stress_xx_qp_8]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx_qp_8
    index_i = 0
    index_j = 0
    selected_qp = 8
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./no_z]
    type = DirichletBC
    variable = disp_y
    boundary = 5
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1e6
    bulk_modulus = 0.333333333333333e6
  [../]
  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./density]
    type = Density
    density = 2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  file_base = gravity_qp_select_out
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

modules/tensor_mechanics/test/tests/jacobian/cto19.i

# DruckerPragerHyperbolic

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 0.4
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    smoother = 1
    yield_function_tolerance = 1E-11
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7 1'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '10 0 0  0 10 0  0 0 10'
    eigenstrain_name = ini_stress
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-11
    plastic_models = dp
    tangent_operator = nonlinear
    min_stepsize = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/bcs/periodic/auto_periodic_bc_test_3d.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 10
  ny = 10
  nz = 10
  xmax = 40
  ymax = 40
  zmax = 40
  elem_type = HEX8
[]

[Variables]
  active = 'u'

  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  active = 'diff forcing dot'

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./forcing]
    type = GaussContForcing
    variable = u
  [../]

  [./dot]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      variable = u
      auto_direction = 'x y z'
    [../]
  [../]
[]

[Executioner]
  type = Transient
  dt = 1
  num_steps = 20
  solve_type = NEWTON
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = out_auto_3d
  exodus = true
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/small_deform2.i

# apply repeated stretches in x, y and z directions, so that mean_stress = 0
# This maps out the yield surface in the octahedral plane for zero mean stress

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '2E-6*x*sin(t)'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '2E-6*y*sin(2*t)'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-2E-6*z*(sin(t)+sin(2*t))'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f0]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
  [./f1]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 20
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulomb
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    mc_tip_smoother = 4
    mc_edge_smoother = 20
    yield_function_tolerance = 1E-3
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 100
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform2
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/porous_flow/test/tests/chemistry/dissolution_limited_2phase.i

# Using a two-phase system (see dissolution_limited.i for the single-phase)
# The saturation and porosity are chosen so that the results are identical to dissolution_limited.i
#
# The dissolution reaction, with limited initial mineral concentration
#
# a <==> mineral
#
# produces "mineral".  Using mineral_density = fluid_density, theta = 1 = eta, the DE is
#
# a' = -(mineral / (porosity * saturation))' = rate * surf_area * molar_vol (1 - (1 / eqm_const) * (act_coeff * a)^stoi)
#
# The following parameters are used
#
# T_ref = 0.5 K
# T = 1 K
# activation_energy = 3 J/mol
# gas_constant = 6 J/(mol K)
# kinetic_rate_at_ref_T = 0.60653 mol/(m^2 s)
# These give rate = 0.60653 * exp(1/2) = 1 mol/(m^2 s)
#
# surf_area = 0.5 m^2/L
# molar_volume = 2 L/mol
# These give rate * surf_area * molar_vol = 1 s^-1
#
# equilibrium_constant = 0.5 (dimensionless)
# primary_activity_coefficient = 2 (dimensionless)
# stoichiometry = 1 (dimensionless)
# This means that 1 - (1 / eqm_const) * (act_coeff * a)^stoi = 1 - 4 a, which is positive for a < 0.25, ie dissolution for a(t=0) < 0.25
#
# The solution of the DE is
# a = eqm_const / act_coeff + (a(t=0) - eqm_const / act_coeff) exp(-rate * surf_area * molar_vol * act_coeff * t / eqm_const)
#   = 0.25 + (a(t=0) - 0.25) exp(-4 * t)
# c = c(t=0) - (a - a(t=0)) * porosity * saturation
#
# However, c(t=0) is small, so that the reaction only works until c=0, then a and c both remain fixed
#
# This test checks that (a + c / (porosity * saturation)) is time-independent, and that a follows the above solution, until c=0 and thereafter remains fixed.
#
# Aside:
#    The exponential curve is not followed exactly because moose actually solves
#    (a - a_old)/dt = rate * surf_area * molar_vol (1 - (1 / eqm_const) * (act_coeff * a)^stoi)
#    which does not give an exponential exactly, except in the limit dt->0
[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Variables]
  [./a]
    initial_condition = 0.05
  [../]
[]

[AuxVariables]
  [./eqm_k]
    initial_condition = 0.5
  [../]
  [./pressure0]
  [../]
  [./saturation1]
    initial_condition = 0.25
  [../]
  [./b]
    initial_condition = 0.123
  [../]
  [./ini_mineral_conc]
    initial_condition = 0.015
  [../]
  [./mineral]
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./should_be_static]
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[AuxKernels]
  [./mineral]
    type = PorousFlowPropertyAux
    property = mineral_concentration
    mineral_species = 0
    variable = mineral
  [../]
  [./should_be_static]
    type = ParsedAux
    args = 'mineral a'
    function = 'a + mineral / 0.1'
    variable = should_be_static
  [../]
[]

[GlobalParams]
  PorousFlowDictator = dictator
[]

[Kernels]
  [./mass_a]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = a
  [../]
  [./pre_dis]
    type = PorousFlowPreDis
    variable = a
    mineral_density = 1000
    stoichiometry = 1
  [../]
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = a
    number_fluid_phases = 2
    number_fluid_components = 2
    number_aqueous_kinetic = 1
    aqueous_phase_number = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureConst
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2e9 # huge, so mimic chemical_reactions
      density0 = 1000
      thermal_expansion = 0
      viscosity = 1e-3
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
    temperature = 1
  [../]
  [./ppss]
    type = PorousFlow2PhasePS
    capillary_pressure = pc
    phase0_porepressure = pressure0
    phase1_saturation = saturation1
  [../]
  [./mass_frac]
    type = PorousFlowMassFraction
    mass_fraction_vars = 'b a'
  [../]
  [./predis]
    type = PorousFlowAqueousPreDisChemistry
    primary_concentrations = a
    num_reactions = 1
    equilibrium_constants = eqm_k
    primary_activity_coefficients = 2
    reactions = 1
    specific_reactive_surface_area = 0.5
    kinetic_rate_constant = 0.6065306597126334
    activation_energy = 3
    molar_volume = 2
    gas_constant = 6
    reference_temperature = 0.5
  [../]
  [./mineral_conc]
    type = PorousFlowAqueousPreDisMineral
    initial_concentrations = ini_mineral_conc
  [../]
  [./simple_fluid0]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./simple_fluid1]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 1
  [../]
  [./porosity]
    type = PorousFlowPorosityConst
    porosity = 0.4
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  nl_abs_tol = 1E-10
  dt = 0.01
  end_time = 1
[]

[Postprocessors]
  [./a]
    type = PointValue
    point = '0 0 0'
    variable = a
  [../]
  [./should_be_static]
    type = PointValue
    point = '0 0 0'
    variable = should_be_static
  [../]
[]
[Outputs]
  interval = 10
  csv = true
  perf_graph = true
[]

modules/chemical_reactions/test/tests/solid_kinetics/2species.i

# Simple reaction-diffusion example to illustrate the use of the SolidKineticReactions
# action.
# In this example, two primary species a and b diffuse towards each other from
# opposite ends of a porous medium, reacting when they meet to form a mineral
# precipitate. The kinetic reaction is specified in the SolidKineticReactions block as:
#
# kin_reactions = '(1.0)a+(1.0)b=mineral'
#
# where a and b are the primary species (reactants), mineral is the precipitate,
# and the values in the parentheses are the stoichiometric coefficients for each
# species in the kinetic reaction.
#
# The SolidKineticReactions action creates all the required kernels and auxkernels
# to compute the reaction given by the above kinetic reaction equation.
#
# Specifically, it adds to following:
# * An AuxVariable named 'mineral' (given in the RHS of the kinetic reaction)
# * A KineticDisPreConcAux AuxKernel for this AuxVariable with all parameters
# * A CoupledBEKinetic Kernel for each primary species with all parameters

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmax = 1
  ymax = 1
  nx = 40
[]

[Variables]
  [./a]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0
  [../]
  [./b]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0
  [../]
[]

[ReactionNetwork]
  [./SolidKineticReactions]
    primary_species = 'a b'
    secondary_species = mineral
    kin_reactions = 'a + b = mineral'
    log10_keq = '-6'
    specific_reactive_surface_area = '1.0'
    kinetic_rate_constant = '1.0e-8'
    activation_energy = '1.5e4'
    gas_constant = 8.314
    reference_temperature = '298.15'
    system_temperature = '298.15'
  [../]
[]

[Kernels]
  [./a_ie]
    type = PrimaryTimeDerivative
    variable = a
  [../]
  [./a_pd]
    type = PrimaryDiffusion
    variable = a
  [../]
  [./b_ie]
    type = PrimaryTimeDerivative
    variable = b
  [../]
  [./b_pd]
    type = PrimaryDiffusion
    variable = b
  [../]
[]

[BCs]
  [./a_left]
    type = DirichletBC
    variable = a
    preset = false
    boundary = left
    value = 1.0e-2
  [../]
  [./a_right]
    type = DirichletBC
    variable = a
    preset = false
    boundary = right
    value = 0
  [../]
  [./b_left]
    type = DirichletBC
    variable = b
    preset = false
    boundary = left
    value = 0
  [../]
  [./b_right]
    type = DirichletBC
    variable = b
    preset = false
    boundary = right
    value = 1.0e-2
  [../]
[]

[Materials]
  [./porous]
    type = GenericConstantMaterial
    prop_names = 'diffusivity conductivity porosity'
    prop_values = '5e-4 4e-3 0.4'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  end_time = 50
  dt = 5
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Outputs]
  file_base = 2species_out
  exodus = true
  perf_graph = true
  print_linear_residuals = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto24.i

# CappedDruckerPrager

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]


[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./phi]
    type = TensorMechanicsHardeningConstant
    value = 0.8
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 0.4
  [../]
  [./dp]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = phi
    mc_dilation_angle = psi
    yield_function_tolerance = 1E-11     # irrelevant here
    internal_constraint_tolerance = 1E-9 # irrelevant here
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 0
    lambda = 0.7
    shear_modulus = 1.0
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '10 0 0  0 10 0  0 0 10'
    eigenstrain_name = ini_stress
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = dp
  [../]
  [./dp]
    type = CappedDruckerPragerStressUpdate
    DP_model = dp
    tensile_strength = ts
    compressive_strength = cs
    yield_function_tol = 1E-11
    tip_smoother = 1
    smoothing_tol = 1
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/solid_mechanics/test/tests/domain_integral_thermal/j_integral_2d_mean_ctefunc.i

# This tests the thermal term in the J-integral with a temperature-
# dependent coefficient of thermal expansion.  This version of the
# uses a mean CTE function that is equivalent to an instantaneous
# CTE function in an accompanying test, and results should be nearly
# identical for these two tests.

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
[]

[Mesh]
  file = crack2d.e
  displacements = 'disp_x disp_y'
#  uniform_refine = 3
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]


[AuxVariables]
  [./stress_xx]      # stress aux variables are defined for output; this is a way to get integration point variables to the output file
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./vonmises]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./SED]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./temp]
    order = FIRST
    family = LAGRANGE
  [../]
[]


[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = 10.0*(2*x/504)
  [../]
  [./cte_func_mean]
    type = ParsedFunction
    vars = 'tsf tref scale' #stress free temp, reference temp, scale factor
    vals = '0.0 0.5  1e-6'
    value = 'scale * (0.5 * t^2 - 0.5 * tsf^2) / (t - tref)'
  [../]
  [./cte_func_inst]
    type = PiecewiseLinear
    xy_data = '-10 -10
                10  10'
    scale_factor = 1e-6
  [../]
[]

[DomainIntegral]
  integrals = JIntegral
  boundary = 800
  crack_direction_method = CrackDirectionVector
  crack_direction_vector = '1 0 0'
  2d = true
  axis_2d = 2
  radius_inner = '60.0 80.0 100.0 120.0'
  radius_outer = '80.0 100.0 120.0 140.0'
  incremental = true
  solid_mechanics = true
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[AuxKernels]
  [./stress_xx]               # computes stress components for output
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
    execute_on = timestep_end     # for efficiency, only compute at the end of a timestep
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
    execute_on = timestep_end
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
    execute_on = timestep_end
  [../]
  [./vonmises]
    type = MaterialTensorAux
    tensor = stress
    variable = vonmises
    quantity = vonmises
    execute_on = timestep_end
  [../]
  [./SED]
    type = MaterialRealAux
    variable = SED
    property = strain_energy_density
    execute_on = timestep_end
  [../]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
    block = 1
  [../]
[]

[BCs]

  [./crack_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 400
    value = 0.0
  [../]

  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = 900
    value = 0.0
  [../]

[] # BCs

[Materials]
  [./stiffStuff]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 207000
    poissons_ratio = 0.3
#    thermal_expansion = 1.35e-5
    formulation = NonlinearPlaneStrain
    compute_JIntegral = true
    temp = temp
    stress_free_temperature = 0.0
    thermal_expansion_function = cte_func_mean
    thermal_expansion_reference_temperature = 0.5
    thermal_expansion_function_type = mean
  [../]
[]


[Executioner]

  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm         31   preonly   lu      1'

  line_search = 'none'

   l_max_its = 50
   nl_max_its = 40

   nl_rel_step_tol= 1e-10
   nl_rel_tol = 1e-10


   start_time = 0.0
   dt = 1

   end_time = 1
   num_steps = 1

[]

[Outputs]
  execute_on = 'timestep_end'
  csv = true
[]

[Preconditioning]
  active = 'smp'
  [./smp]
    type = SMP
    pc_side = left
    ksp_norm = preconditioned
    full = true
  [../]
[]

modules/tensor_mechanics/test/tests/static_deformations/cosserat_shear.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 6
  ny = 6
  ymin = 0
  ymax = 10
  nz = 1
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  Cosserat_rotations = 'wc_x wc_y wc_z'
[]

[Postprocessors]
  [./disp_y_top]
    type = PointValue
    point = '0.5 1 0.1'
    variable = disp_y
  [../]
  [./disp_x_top]
    type = PointValue
    point = '0.5 1 0.1'
    variable = disp_x
  [../]
  [./wc_z_top]
    type = PointValue
    point = '0.5 1 0.1'
    variable = wc_z
  [../]
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./wc_x]
  [../]
  [./wc_y]
  [../]
  [./wc_z]
  [../]
[]

[Kernels]
  [./cx_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_x
    displacements = 'disp_x disp_y disp_z'
    component = 0
  [../]
  [./cy_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_y
    displacements = 'disp_x disp_y disp_z'
    component = 1
  [../]
  [./cz_elastic]
    type = CosseratStressDivergenceTensors
    variable = disp_z
    component = 2
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./x_couple]
    type = StressDivergenceTensors
    variable = wc_x
    displacements = 'wc_x wc_y wc_z'
    component = 0
    base_name = couple
  [../]
  [./y_couple]
    type = StressDivergenceTensors
    variable = wc_y
    component = 1
    displacements = 'wc_x wc_y wc_z'
    base_name = couple
  [../]
  [./z_couple]
    type = StressDivergenceTensors
    variable = wc_z
    component = 2
    displacements = 'wc_x wc_y wc_z'
    base_name = couple
  [../]
  [./x_moment]
    type = MomentBalancing
    variable = wc_x
    component = 0
  [../]
  [./y_moment]
    type = MomentBalancing
    variable = wc_y
    component = 1
  [../]
  [./z_moment]
    type = MomentBalancing
    variable = wc_z
    component = 2
  [../]
[]

[BCs]
  [./Periodic]
    [./xperiodic]
      auto_direction = x
      variable = 'disp_x disp_y disp_z wc_x wc_y wc_z'
    [../]
    [./zperiodic]
      auto_direction = z
      variable = 'disp_x disp_y disp_z wc_x wc_y wc_z'
    [../]
  [../]

  [./ux_equals_zero_on_top]
    type = DirichletBC
    variable = disp_x
    boundary = top
    value = 0
  [../]

  [./wcx_equals_zero_on_top]
    type = DirichletBC
    variable = wc_x
    boundary = top
    value = 0
  [../]
  [./wcy_equals_zero_on_top]
    type = DirichletBC
    variable = wc_y
    boundary = top
    value = 0
  [../]
  [./wcz_equals_zero_on_top]
    type = DirichletBC
    variable = wc_z
    boundary = top
    value = 0
  [../]

  # following is natural BC
  [./top_cauchy_zero]
    type = NeumannBC
    variable = disp_x
    boundary = top
    value = 0
  [../]

  [./ux_bottom]
    type = DirichletBC
    variable = disp_x
    boundary = bottom
    value = 1.0
  [../]
  [./uy_bottom]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./uz_bottom]
    type = DirichletBC
    variable = disp_z
    boundary = bottom
    value = 0.0
  [../]

  [./wc_x_bottom]
    type = DirichletBC
    variable = wc_x
    boundary = bottom
    value = 0.0
  [../]
  [./wc_y_bottom]
    type = DirichletBC
    variable = wc_y
    boundary = bottom
    value = 0.0
  [../]
  [./wc_z_bottom]
    type = DirichletBC
    variable = wc_z
    boundary = bottom
    value = 0.17
  [../]

[]

[Materials]
  [./elasticity_tensor]
    type = ComputeCosseratElasticityTensor
    B_ijkl = 40
    E_ijkl = '5 10 5'
    fill_method = 'general_isotropic'
  [../]
  [./strain]
    type = ComputeCosseratSmallStrain
  [../]
  [./stress]
    type = ComputeCosseratLinearElasticStress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -ksp_atol -ksp_rtol'
    petsc_options_value = 'gmres bjacobi 1E-10 1E-10 10 1E-15 1E-10'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  num_steps = 1
[]


[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/phase_field/test/tests/Nucleation/material.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  nz = 0
  xmin = 0
  xmax = 20
  ymin = 0
  ymax = 20
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    boundary = left
    variable = c
    value = 0
  [../]
  [./right]
    type = DirichletBC
    boundary = right
    variable = c
    value = 1
  [../]
  [./Periodic]
    [./all]
      auto_direction = y
    [../]
  [../]
[]

[Kernels]
  [./c]
    type = Diffusion
    variable = c
  [../]
  [./dt]
    type = TimeDerivative
    variable = c
  [../]
[]

[Materials]
  [./nucleation]
    type = DiscreteNucleation
    op_names  = c
    op_values = 1
    map = map
    outputs = exodus
  [../]
[]

[UserObjects]
  [./inserter]
    type = DiscreteNucleationInserter
    hold_time = 1
    probability = 0.01
  [../]
  [./map]
    type = DiscreteNucleationMap
    radius = 3.27
    periodic = c
    inserter = inserter
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'
  num_steps = 10
  dt = 0.1
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
  hide = c
[]

modules/combined/test/tests/contact_verification/patch_tests/plane_4/plane4_mu_0_2_pen_sm.i

[Mesh]
  file = plane4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = ReferenceResidualProblem
  extra_tag_vectors = 'ref'
  reference_vector = 'ref'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    save_in_disp_y = saved_y
    save_in_disp_x = saved_x
    extra_vector_tags = 'ref'
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[]

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./side_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = LinearIsotropicMaterial
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = LinearIsotropicMaterial
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-7
  l_max_its = 100
  nl_max_its = 200
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-3
[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  file_base = plane4_mu_0_2_pen_out
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    file_base = plane4_mu_0_2_pen_check
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    model = coulomb
    formulation = penalty
    normalize_penalty = true
    friction_coefficient = 0.2
    penalty = 1e+9
  [../]
[]

test/tests/mesh_modifiers/block_deleter/BlockDeleterTest1.i

# 2D, concave block
[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 4
  ny = 4
  xmin = 0
  xmax = 4
  ymin = 0
  ymax = 4
[]

[MeshModifiers]
  [./SubdomainBoundingBox]
    type = SubdomainBoundingBox
    block_id = 1
    bottom_left = '0 0 0'
    top_right = '3 3 3'
  [../]
  [./ed0]
    type = BlockDeleter
    block_id = 1
    depends_on = SubdomainBoundingBox
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./dt]
    type = TimeDerivative
    variable = u
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./top]
    type = DirichletBC
    variable = u
    boundary = bottom
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  start_time = 0
  end_time = 10
  dt = 10

  solve_type = NEWTON

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/peridynamics/test/tests/plane_stress/conventional_planestress_OSPD.i

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  type = PeridynamicsMesh
  horizon_number = 3

  [./gmg]
    type = GeneratedMeshGenerator
    dim = 2
    nx = 10
    ny = 10
  [../]
  [./gpd]
    type = MeshGeneratorPD
    input = gmg
    retain_fe_mesh = false
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1003
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1003
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1001
    value = 0.001
  [../]
[]

[Modules/Peridynamics/Mechanics/Master]
  [./all]
    formulation = ORDINARY_STATE
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e8
    poissons_ratio = 0.3
  [../]

  [./force_density]
    type = ComputeSmallStrainConstantHorizonMaterialOSPD
    plane_stress = true
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = PJFNK
  line_search = none
  start_time = 0
  end_time = 1
  nl_rel_tol = 1e-10
[]

[Outputs]
  file_base = conventional_planestress_OSPD
  exodus = true
[]

modules/porous_flow/test/tests/poro_elasticity/terzaghi.i

# Terzaghi's problem of consolodation of a drained medium
#
# A saturated soil sample sits in a bath of water.
# It is constrained on its sides, and bottom.
# Its sides and bottom are also impermeable.
# Initially it is unstressed.
# A normal stress, q, is applied to the soil's top.
# The soil then slowly compresses as water is squeezed
# out from the sample from its top (the top BC for
# the porepressure is porepressure = 0).
#
# See, for example.  Section 2.2 of the online manuscript
# Arnold Verruijt "Theory and Problems of Poroelasticity" Delft University of Technology 2013
# but note that the "sigma" in that paper is the negative
# of the stress in TensorMechanics
#
# Here are the problem's parameters, and their values:
# Soil height.  h = 10
# Soil's Lame lambda.  la = 2
# Soil's Lame mu, which is also the Soil's shear modulus.  mu = 3
# Soil bulk modulus.  K = la + 2*mu/3 = 4
# Soil confined compressibility.  m = 1/(K + 4mu/3) = 0.125
# Soil bulk compliance.  1/K = 0.25
# Fluid bulk modulus.  Kf = 8
# Fluid bulk compliance.  1/Kf = 0.125
# Fluid mobility (soil permeability/fluid viscosity).  k = 1.5
# Soil initial porosity.  phi0 = 0.1
# Biot coefficient.  alpha = 0.6
# Soil initial storativity, which is the reciprocal of the initial Biot modulus.  S = phi0/Kf + (alpha - phi0)(1 - alpha)/K = 0.0625
# Consolidation coefficient.  c = k/(S + alpha^2 m) = 13.95348837
# Normal stress on top.  q = 1
# Initial porepressure, resulting from instantaneous application of q, assuming corresponding instantaneous increase of porepressure (Note that this is calculated by MOOSE: we only need it for the analytical solution).  p0 = alpha*m*q/(S + alpha^2 m) = 0.69767442
# Initial vertical displacement (down is positive), resulting from instantaneous application of q (Note this is calculated by MOOSE: we only need it for the analytical solution).  uz0 = q*m*h*S/(S + alpha^2 m)
# Final vertical displacement (down in positive) (Note this is calculated by MOOSE: we only need it for the analytical solution).  uzinf = q*m*h
#
# The solution for porepressure is
# P = 4*p0/\pi \sum_{k=1}^{\infty} \frac{(-1)^{k-1}}{2k-1} \cos ((2k-1)\pi z/(2h)) \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))
# This series converges very slowly for ct/h^2 small, so in that domain
# P = p0 erf( (1-(z/h))/(2 \sqrt(ct/h^2)) )
#
# The degree of consolidation is defined as
# U = (uz - uz0)/(uzinf - uz0)
# where uz0 and uzinf are defined above, and
# uz = the vertical displacement of the top (down is positive)
# U = 1 - (8/\pi^2)\sum_{k=1}^{\infty} \frac{1}{(2k-1)^2} \exp(-(2k-1)^2 \pi^2 ct/(4 h^2))
#
# FINAL NOTE: The above solution assumes constant Biot Modulus.
# In porous_flow this is not true.  Therefore the solution is
# a little different than in the paper.  This test was therefore
# validated against MOOSE's poromechanics, which can choose either
# a constant Biot Modulus (which has been shown to agree with
# the analytic solution), or a non-constant Biot Modulus (which
# gives the same results as porous_flow).

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 10
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = 0
  zmax = 10
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  PorousFlowDictator = dictator
  block = 0
[]

[UserObjects]
  [./dictator]
    type = PorousFlowDictator
    porous_flow_vars = 'porepressure disp_x disp_y disp_z'
    number_fluid_phases = 1
    number_fluid_components = 1
  [../]
  [./pc]
    type = PorousFlowCapillaryPressureVG
    m = 0.8
    alpha = 1
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./porepressure]
  [../]
[]

[BCs]
  [./confinex]
    type = DirichletBC
    variable = disp_x
    value = 0
    boundary = 'left right'
  [../]
  [./confiney]
    type = DirichletBC
    variable = disp_y
    value = 0
    boundary = 'bottom top'
  [../]
  [./basefixed]
    type = DirichletBC
    variable = disp_z
    value = 0
    boundary = back
  [../]
  [./topdrained]
    type = DirichletBC
    variable = porepressure
    value = 0
    boundary = front
  [../]
  [./topload]
    type = NeumannBC
    variable = disp_z
    value = -1
    boundary = front
  [../]
[]

[Kernels]
  [./grad_stress_x]
    type = StressDivergenceTensors
    variable = disp_x
    component = 0
  [../]
  [./grad_stress_y]
    type = StressDivergenceTensors
    variable = disp_y
    component = 1
  [../]
  [./grad_stress_z]
    type = StressDivergenceTensors
    variable = disp_z
    component = 2
  [../]
  [./poro_x]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_x
    component = 0
  [../]
  [./poro_y]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    variable = disp_y
    component = 1
  [../]
  [./poro_z]
    type = PorousFlowEffectiveStressCoupling
    biot_coefficient = 0.6
    component = 2
    variable = disp_z
  [../]
  [./poro_vol_exp]
    type = PorousFlowMassVolumetricExpansion
    variable = porepressure
    fluid_component = 0
  [../]
  [./mass0]
    type = PorousFlowMassTimeDerivative
    fluid_component = 0
    variable = porepressure
  [../]
  [./flux]
    type = PorousFlowAdvectiveFlux
    variable = porepressure
    gravity = '0 0 0'
    fluid_component = 0
  [../]
[]

[Modules]
  [./FluidProperties]
    [./simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 8
      density0 = 1
      thermal_expansion = 0
      viscosity = 0.96
    [../]
  [../]
[]

[Materials]
  [./temperature]
    type = PorousFlowTemperature
  [../]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    C_ijkl = '2 3'
    # bulk modulus is lambda + 2*mu/3 = 2 + 2*3/3 = 4
    fill_method = symmetric_isotropic
  [../]
  [./strain]
    type = ComputeSmallStrain
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./eff_fluid_pressure_qp]
    type = PorousFlowEffectiveFluidPressure
  [../]
  [./vol_strain]
    type = PorousFlowVolumetricStrain
  [../]
  [./ppss]
    type = PorousFlow1PhaseP
    porepressure = porepressure
    capillary_pressure = pc
  [../]
  [./massfrac]
    type = PorousFlowMassFraction
  [../]
  [./simple_fluid]
    type = PorousFlowSingleComponentFluid
    fp = simple_fluid
    phase = 0
  [../]
  [./porosity]
    type = PorousFlowPorosity
    fluid = true
    mechanical = true
    ensure_positive = false
    porosity_zero = 0.1
    biot_coefficient = 0.6
    solid_bulk = 4
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1.5 0 0   0 1.5 0   0 0 1.5'
  [../]
  [./relperm]
    type = PorousFlowRelativePermeabilityCorey
    n = 0 # unimportant in this fully-saturated situation
    phase = 0
  [../]
[]

[Postprocessors]
  [./p0]
    type = PointValue
    outputs = csv
    point = '0 0 0'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p1]
    type = PointValue
    outputs = csv
    point = '0 0 1'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p2]
    type = PointValue
    outputs = csv
    point = '0 0 2'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p3]
    type = PointValue
    outputs = csv
    point = '0 0 3'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p4]
    type = PointValue
    outputs = csv
    point = '0 0 4'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p5]
    type = PointValue
    outputs = csv
    point = '0 0 5'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p6]
    type = PointValue
    outputs = csv
    point = '0 0 6'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p7]
    type = PointValue
    outputs = csv
    point = '0 0 7'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p8]
    type = PointValue
    outputs = csv
    point = '0 0 8'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p9]
    type = PointValue
    outputs = csv
    point = '0 0 9'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./p99]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = porepressure
    use_displaced_mesh = false
  [../]
  [./zdisp]
    type = PointValue
    outputs = csv
    point = '0 0 10'
    variable = disp_z
    use_displaced_mesh = false
  [../]
  [./dt]
    type = FunctionValuePostprocessor
    outputs = console
    function = if(0.5*t<0.1,0.5*t,0.1)
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  start_time = 0
  end_time = 10
  [./TimeStepper]
    type = PostprocessorDT
    postprocessor = dt
    dt = 0.0001
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = terzaghi
  [./csv]
    type = CSV
  [../]
[]

modules/combined/test/tests/gap_heat_transfer_htonly/gap_heat_transfer_htonly_rz_test.i

#
# 2-D RZ Gap Heat Transfer Test without mechanics
#
# This test exercises 1-D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of two element blocks containing one element each.  Each
#   element is a unit cube.  They sit next to one another with a unit between them.
#
# The conductivity of both blocks is set very large to achieve a uniform temperature
#  across each block. The temperature of the far left boundary
#  is ramped from 100 to 200 over one time unit, and then held fixed for an additional
#  time unit.  The temperature of the far right boundary is held fixed at 100.
#
# A simple analytical solution is possible for the heat flux between the blocks, or cylinders in the case of RZ.:
#
#  Flux = (T_left - T_right) * (gapK/(r*ln(r2/r1)))
#
# For gapK = 1 (default value)
#
# The integrated heat flux across the gap at time 2 is then:
#
# 2*pi*h*k*delta_T/(ln(r2/r1))
# 2*pi*1*1*100/(ln(2/1)) = 906.5 watts
#
# For comparison, see results from the flux post processors.
#
# As a second test, use the rectilinear (parallel plate) form of the gap heat transfer.
#
#  Flux = (T_left - T_right) * (gapK/gapL)
#
# For gapK = 1 (default value)
#
# The integrated heat flux across the gap at time 2 is then:
#
# 2*pi*h*k*delta_T/(1)
# 2*pi*1*1*100/(1) = 628.3 watts
#
# For comparison, see results from the flux post processors.
#

[Problem]
  coord_type = RZ
  rz_coord_axis = Y # this is modified through CLI args to test Z-R as opposed to R-Z
[]

[Mesh]
  active = 'file'
  [file]
    type = FileMeshGenerator
    file = gap_heat_transfer_htonly_rz_test.e
  []
  [rotate]
    type = TransformGenerator
    transform = ROTATE
    vector_value = '90 0 0'
    input = file
  []
[]
[Functions]

  [./ramp]
    type = PiecewiseLinear
    x = '0   1   2'
    y = '100 200 200'
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
  [../]
  [./thermal_contact2]
    type = GapHeatTransfer
    variable = temp2
    master = 3
    slave = 2
    gap_geometry_type = PLATE
    appended_property_name = 2
  [../]
[]

[Variables]
  [./temp]
    order = FIRST
    family = LAGRANGE
    initial_condition = 100
  [../]
  [./temp2]
    order = FIRST
    family = LAGRANGE
    initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_cond]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./gap_cond2]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
  [./heat2]
    type = HeatConduction
    variable = temp2
  [../]
[]


[BCs]
  [./temp_far_left]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = ramp
  [../]

  [./temp_far_right]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]

  [./temp_far_left2]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp2
    function = ramp
  [../]

  [./temp_far_right2]
    type = DirichletBC
    boundary = 4
    variable = temp2
    value = 100
  [../]
[]

[AuxKernels]
  [./conductance]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_cond
    boundary = 2
  [../]
  [./conductance2]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_cond2
    boundary = 2
  [../]
[]

[Materials]

  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 1e6
  [../]
  [./density]
    type = Density
    block = '1 2'
    density = 1.0
  [../]
[]

[Executioner]
  type = Transient
#  petsc_options = '-snes_mf_operator -ksp_monitor -snes_ksp_ew'

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'




#  petsc_options_iname = '-snes_type -snes_ls -snes_linesearch_type -ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
#  petsc_options_value = 'ls         basic    basic                    201                hypre    boomeramg      4'
#  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
#  petsc_options_value = '201                hypre    boomeramg      4'

  nl_abs_tol = 1e-3
  nl_rel_tol = 1e-8

  l_tol = 1e-6
  l_max_its = 100

  start_time = 0.0
  dt = 1e-1
  dtmin = 1e-1
  end_time = 2.0
[]

[Postprocessors]

  [./temp_left]
    type = SideAverageValue
    boundary = 2
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./temp_right]
    type = SideAverageValue
    boundary = 3
    variable = temp
    execute_on = 'initial timestep_end'
  [../]

  [./flux_left]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
  [../]

  [./flux_right]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
  [../]

  [./temp_left2]
    type = SideAverageValue
    boundary = 2
    variable = temp2
    execute_on = 'initial timestep_end'
  [../]

  [./temp_right2]
    type = SideAverageValue
    boundary = 3
    variable = temp2
    execute_on = 'initial timestep_end'
  [../]

  [./flux_left2]
    type = SideFluxIntegral
    variable = temp2
    boundary = 2
    diffusivity = thermal_conductivity
  [../]

  [./flux_right2]
    type = SideFluxIntegral
    variable = temp2
    boundary = 3
    diffusivity = thermal_conductivity
  [../]

[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/phase_field_crystal/PFCTrad/pfct_newton_split1_asm5.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 50
  ny = 50
  xmax = 8
  ymax = 8
[]

[Variables]
  [./n]
    [./InitialCondition]
      type = RandomIC
      min = -1
      max = 4
    [../]
  [../]
  [./u]
    scaling = 1e2
  [../]
  [./v]
    scaling = 1e1
  [../]
[]

[Kernels]
  [./ndot]
    type = TimeDerivative
    variable = n
  [../]
  [./n_bulk]
    type = CHBulkPFCTrad
    variable = n
  [../]
  [./u_term]
    type = MatDiffusion
    variable = n
    v = u
    diffusivity = C2
  [../]
  [./v_term]
    type = MatDiffusion
    variable = n
    v = v
    diffusivity = C4
  [../]
  [./u_rctn]
    type = Reaction
    variable = u
  [../]
  [./u_gradn]
    type = LaplacianSplit
    variable = u
    c = n
  [../]
  [./v_rctn]
    type = Reaction
    variable = v
  [../]
  [./v_gradu]
    type = LaplacianSplit
    variable = v
    c = u
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y'
    [../]
  [../]
[]

[Materials]
  [./PFCTrad]
    type = PFCTradMaterial
    order = 4
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'NEWTON'

  l_max_its = 100
  l_tol = 1e-04
  nl_rel_tol = 1e-09
  nl_abs_tol = 1e-11

  splitting = 'nuv'
  petsc_options = '-snes_view'

  num_steps = 2
  dt = 0.1
[]

[Splits]
  [./nuv]
    splitting       = 'v nu'
    splitting_type  = schur
    schur_type      = full
    schur_pre       = Sp
    #petsc_options = '-dm_view'
  [../]
  [./nu]
    vars = 'n u'
    petsc_options = '-ksp_monitor'
    petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_asm_overlap  -sub_pc_type'
    petsc_options_value =  '              101      asm               5            lu'
  [../]
  [./v]
    vars = 'v'
    #petsc_options = '-ksp_monitor'
    petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_ksp_type -sub_pc_type -pc_asm_overlap'
    petsc_options_value =  'asm         101   preonly   lu      0'
    #full = true
  [../]
[]

[Outputs]
  execute_on = 'initial timestep_end linear'
  exodus = true
[]

modules/tensor_mechanics/test/tests/notched_plastic_block/biaxial_planar.i

# Uses non-smoothed Mohr-Coulomb (via ComputeMultiPlasticityStress and TensorMechanicsPlasticMohrCoulombMulti) to simulate the following problem.
# A cubical block is notched around its equator.
# All of its outer surfaces have roller BCs, but the notched region is free to move as needed
# The block is initialised with a high hydrostatic tensile stress
# Without the notch, the BCs do not allow contraction of the block, and this stress configuration is admissible
# With the notch, however, the interior parts of the block are free to move in order to relieve stress, and this causes plastic failure
# The top surface is then pulled upwards (the bottom is fixed because of the roller BCs)
# This causes more failure
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 9
    ny = 9
    nz = 9
    xmin = 0
    xmax = 0.1
    ymin = 0
    ymax = 0.1
    zmin = 0
    zmax = 0.1
  []
  [block_to_remove_xmin]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 -0.01 0.045'
    top_right = '0.01 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = generated_mesh
  []
  [block_to_remove_xmax]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '0.09 -0.01 0.045'
    top_right = '0.11 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_xmin
  []
  [block_to_remove_ymin]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 -0.01 0.045'
    top_right = '0.11 0.01 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_xmax
  []
  [block_to_remove_ymax]
    type = SubdomainBoundingBoxGenerator
    bottom_left = '-0.01 0.09 0.045'
    top_right = '0.11 0.11 0.055'
    location = INSIDE
    block_id = 1
    input = block_to_remove_ymin
  []
  [remove_block]
    type = BlockDeletionGenerator
    block_id = 1
    input = block_to_remove_ymax
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_zz'
    eigenstrain_names = ini_stress
  [../]
[]

[Postprocessors]
  [./uz]
    type = PointValue
    point = '0 0 0.1'
    use_displaced_mesh = false
    variable = disp_z
  [../]
  [./s_zz]
    type = ElementAverageValue
    use_displaced_mesh = false
    variable = stress_zz
  [../]
  [./num_res]
    type = NumResidualEvaluations
  [../]
  [./nr_its]
    type = ElementAverageValue
    variable = num_iters
  [../]
  [./max_nr_its]
    type = ElementExtremeValue
    variable = num_iters
  [../]
  [./runtime]
    type = PerfGraphData
    data_type = TOTAL
    section_name = 'Root'
  [../]
[]

[BCs]
  # back=zmin, front=zmax, bottom=ymin, top=ymax, left=xmin, right=xmax
  [./xmin_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./xmax_xzero]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./ymin_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./ymax_yzero]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.0
  [../]
  [./zmin_zzero]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = '0'
  [../]
  [./zmax_disp]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = front
    function = '1E-6*max(t,0)'
  [../]
[]

[AuxVariables]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./plastic_strain]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./num_iters]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./plastic_strain_aux]
    type = MaterialRankTwoTensorAux
    i = 2
    j = 2
    property = plastic_strain
    variable = plastic_strain
  [../]
  [./num_iters_auxk] # cannot use plastic_NR_iterations directly as this is zero, since no NR iterations are actually used, since we use a custom algorithm to do the return
    type = ParsedAux
    args = plastic_strain
    function = 'if(plastic_strain>0,1,0)'
    variable = num_iters
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 5E6
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 10
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = mc_coh
    friction_angle = mc_phi
    dilation_angle = mc_psi
    yield_function_tolerance = 1E-5
    internal_constraint_tolerance = 1E-11
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 16E9
    poissons_ratio = 0.25
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    ep_plastic_tolerance = 1E-11
    plastic_models = mc
    max_NR_iterations = 1000
    debug_fspb = crash
  [../]
  [./strain_from_initial_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '6E6 0 0  0 6E6 0  0 0 6E6'
    eigenstrain_name = ini_stress
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  start_time = -1
  end_time = 10
  dt = 1
  solve_type = NEWTON
  type = Transient

  l_tol = 1E-2
  nl_abs_tol = 1E-5
  nl_rel_tol = 1E-7
  l_max_its = 200
  nl_max_its = 400

  petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
  petsc_options_value = ' asm      2              lu            gmres     200'
[]


[Outputs]
  file_base = biaxial_planar
  perf_graph = true
  exodus = false
  csv = true
[]

test/tests/auxkernels/vector_function_aux/vector_function_aux.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[AuxVariables]
  [vec]
    family = LAGRANGE_VEC
    order = FIRST
  []
[]

[Variables]
  [u][]
[]

[Functions]
  [function]
    type = ParsedVectorFunction
    value_x = t*x
    value_y = t*y
  []
[]

[AuxKernels]
  [vec]
    type = VectorFunctionAux
    variable = vec
    function = function
    execute_on = 'INITIAL TIMESTEP_END'
  [../]
[]

[Problem]
  type = FEProblem
  #solve = false
  kernel_coverage_check = false
[]

[Executioner]
  type = Transient
  start_time = 0.0
  num_steps = 5
  dt = 1
[]

[Outputs]
  exodus = true
[]

test/tests/materials/boundary_material/elem_aux_bc_on_bnd.i

[Mesh]
  type = GeneratedMesh
  dim = 2

  xmin = 0
  xmax = 1
  nx = 3

  ymin = 0
  ymax = 1
  ny = 3
[]

[AuxVariables]
   [./foo]
     order = CONSTANT
     family = MONOMIAL
   [../]
[]

[Variables]
   [./temp]
    initial_condition = 1
  [../]
[]

[AuxKernels]
  [./copy_bar]
    type = MaterialRealAux
    property = bar
    variable = foo
    boundary = right
    execute_on = timestep_end
  [../]
[]

[Kernels]
  [./heat]
    type = CoefDiffusion
    variable = temp
    coef = 1
  [../]
[]

[BCs]
  [./leftt]
    type = DirichletBC
    boundary =  left
    value    =  2
    variable =  temp
  [../]
[]

[Materials]
  [./thermal_cond]
    type = GenericConstantMaterial
    prop_names = 'bar'
    prop_values = '1'
    block = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  num_steps = 1
  end_time = 1
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/weak_plane_tensile/small_deform1.i

# checking for small deformation
# A single element is stretched by 1E-6m in x,y and z directions.
# stress_zz = Youngs Modulus*Strain = 2E6*1E-6 = 2 Pa
# wpt_tensile_strength is set to 1Pa
# Then the final stress should return to the yeild surface and its value should be 1pa.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./bottomx]
    type = DirichletBC
    variable = disp_x
    boundary = back
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    variable = disp_y
    boundary = back
    value = 0.0
  [../]
  [./bottomz]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]

  [./topx]
    type = DirichletBC
    variable = disp_x
    boundary = front
    value = 0E-6
  [../]
  [./topy]
    type = DirichletBC
    variable = disp_y
    boundary = front
    value = 0E-6
  [../]
  [./topz]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 1E-6
  [../]
[]

[AuxVariables]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_zx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zx
    index_i = 2
    index_j = 0
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./str]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./wpt]
    type = TensorMechanicsPlasticWeakPlaneTensile
    tensile_strength = str
    yield_function_tolerance = 1E-6
    internal_constraint_tolerance = 1E-5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E6'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    plastic_models = wpt
    transverse_direction = '0 0 1'
    ep_plastic_tolerance = 1E-5
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform1
  exodus = true
  [./csv]
    type = CSV
    [../]
[]

test/tests/auxkernels/flux_average/flux_average.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./flux]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./bc_func]
    type = ParsedFunction
    value = y+1
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
[]

[AuxKernels]
  [./flux_average]
    type = FluxAverageAux
    variable = flux
    coupled = u
    diffusivity = 0.1
    boundary = right
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = FunctionDirichletBC
    variable = u
    boundary = right
    function = bc_func
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

test/tests/auxkernels/solution_aux/solution_aux_exodus_interp_restart2.i

[Mesh]
  # This test uses SolutionUserObject which doesn't work with DistributedMesh.
  type = FileMesh
  file = cubesource.e
  parallel_type = replicated
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
    initial_condition = 0.0
  [../]
[]

[AuxVariables]
  [./nn]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[AuxKernels]
  [./nn]
    type = SolutionAux
    variable = nn
    solution = soln
  [../]
[]

[UserObjects]
  [./soln]
    type = SolutionUserObject
    mesh = cubesource.e
    system_variables = source_nodal
  [../]
[]

[BCs]
  [./stuff]
    type = DirichletBC
    variable = u
    boundary = '1 2'
    value = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  l_max_its = 800
  nl_rel_tol = 1e-10
  num_steps = 5
  start_time = 2.5
  end_time = 5
  dt = 0.5
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

[Problem]
  restart_file_base = solution_aux_exodus_interp_restart1_out_cp/0005
[]

test/tests/multiapps/multilevel/time_dt_from_master_subsub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 100
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
  [./console]
    type = Console
    output_file = true
  [../]
[]

modules/xfem/test/tests/diffusion_xfem/levelsetcut2d.i

# 2D: Mesh is cut by level set based cutter
# The level set is a MOOSE variable

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 3
  ny = 3
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  elem_type = QUAD4
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./level_set_cut_uo]
    type = LevelSetCutUserObject
    level_set_var = ls
  [../]
[]

[Variables]
  [./u]
  [../]
  [./ls]
  [../]
[]

[Functions]
  [./u_left]
    type = PiecewiseLinear
    x = '0   2'
    y = '3   5'
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./diff_ls]
    type = Diffusion
    variable = ls
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = 3
    value = 3
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = 1
    value = 0
  [../]

  [./left_ls]
    type = DirichletBC
    variable = ls
    boundary = 3
    value = 3
  [../]

  [./right_ls]
    type = DirichletBC
    variable = ls
    boundary = 1
    value = -3
  [../]

[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1
  end_time = 1.0
  max_xfem_update = 1
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/tensor_mechanics/test/tests/capped_weak_plane/push_and_shear.i

# Dynamic problem with plasticity.
# A column of material (not subject to gravity) has the z-displacement
# of its sides fixed, but the centre of its bottom side is pushed
# upwards.  This causes failure in the bottom elements.
#
# The problem utilises damping in the following way.
# The DynamicStressDivergenceTensors forms the residual
# integral  grad(stress) + zeta*grad(stress-dot)
#     = V/L * elasticity * (du/dx + zeta * dv/dx)
# where V is the elemental volume, and L is the length-scale,
# and u is the displacement, and v is the velocity.
# The InertialForce forms the residual
# integral  density * (accel + eta * velocity)
#     = V * density * (a + eta * v)
# where a is the acceleration.
# So, a damped oscillator description with both these
# kernels looks like
# 0 = V * (density * a + density * eta * v + elasticity * zeta * v / L^2 + elasticity / L^2 * u)
# Critical damping is when the coefficient of v is
# 2 * sqrt(density * elasticity / L^2)
# In the case at hand, density=1E4, elasticity~1E10 (Young is 16GPa),
# L~1 to 10 (in the horizontal or vertical direction), so this coefficient ~ 1E7 to 1E6.
# Choosing eta = 1E3 and zeta = 1E-2 gives approximate critical damping.
# If zeta is high then steady-state is achieved very quickly.
#
# In the case of plasticity, the effective stiffness of the elements
# is significantly less.  Therefore, the above parameters give
# overdamping.
#
# This simulation is a nice example of the irreversable and non-uniqueness
# of simulations involving plasticity.  The result depends on the damping
# parameters and the time stepping.
[Mesh]
  [generated_mesh]
    type = GeneratedMeshGenerator
    dim = 3
    nx = 10
    ny = 1
    nz = 5
    bias_z = 1.5
    xmin = -10
    xmax = 10
    ymin = -10
    ymax = 10
    zmin = -100
    zmax = 0
  []
  [bottomz_middle]
    type = BoundingBoxNodeSetGenerator
    new_boundary = bottomz_middle
    bottom_left = '-1 -1500 -105'
    top_right = '1 1500 -95'
    input = generated_mesh
  []
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
  beta = 0.25 # Newmark time integration
  gamma = 0.5 # Newmark time integration
  eta = 1E3 #0.3E4 # higher values mean more damping via density
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./DynamicTensorMechanics] # zeta*K*vel + K * disp
    displacements = 'disp_x disp_y disp_z'
    zeta = 1E-2 # higher values mean more damping via stiffness
    alpha = 0 # better nonlinear convergence than for alpha>0
  [../]
  [./inertia_x] # M*accel + eta*M*vel
    type = InertialForce
    use_displaced_mesh = false
    variable = disp_x
    velocity = vel_x
    acceleration = accel_x
  [../]
  [./inertia_y]
    type = InertialForce
    use_displaced_mesh = false
    variable = disp_y
    velocity = vel_y
    acceleration = accel_y
  [../]
  [./inertia_z]
    type = InertialForce
    use_displaced_mesh = false
    variable = disp_z
    velocity = vel_z
    acceleration = accel_z
  [../]
[]

[BCs]
  [./no_x2]
    type = DirichletBC
    variable = disp_x
    boundary = right
    value = 0.0
  [../]
  [./no_x1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./no_y1]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./no_y2]
    type = DirichletBC
    variable = disp_y
    boundary = top
    value = 0.0
  [../]

  [./z_fixed_sides_xmin]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0
  [../]
  [./z_fixed_sides_xmax]
    type = DirichletBC
    variable = disp_z
    boundary = right
    value = 0
  [../]

  [./bottomz]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = bottomz_middle
    function = min(10*t,1)
  [../]
[]

[AuxVariables]
  [./accel_x]
  [../]
  [./vel_x]
  [../]
  [./accel_y]
  [../]
  [./vel_y]
  [../]
  [./accel_z]
  [../]
  [./vel_z]
  [../]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strainp_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./straint_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./f_compressive]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_shear]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./intnl_tensile]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./ls]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./accel_x] # Calculates and stores acceleration at the end of time step
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    execute_on = timestep_end
  [../]
  [./vel_x] # Calculates and stores velocity at the end of the time step
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    execute_on = timestep_end
  [../]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./strainp_xx]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xx
    index_i = 0
    index_j = 0
  [../]
  [./strainp_xy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xy
    index_i = 0
    index_j = 1
  [../]
  [./strainp_xz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_xz
    index_i = 0
    index_j = 2
  [../]
  [./strainp_yy]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yy
    index_i = 1
    index_j = 1
  [../]
  [./strainp_yz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_yz
    index_i = 1
    index_j = 2
  [../]
  [./strainp_zz]
    type = RankTwoAux
    rank_two_tensor = plastic_strain
    variable = strainp_zz
    index_i = 2
    index_j = 2
  [../]
  [./straint_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xx
    index_i = 0
    index_j = 0
  [../]
  [./straint_xy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xy
    index_i = 0
    index_j = 1
  [../]
  [./straint_xz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_xz
    index_i = 0
    index_j = 2
  [../]
  [./straint_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yy
    index_i = 1
    index_j = 1
  [../]
  [./straint_yz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_yz
    index_i = 1
    index_j = 2
  [../]
  [./straint_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = straint_zz
    index_i = 2
    index_j = 2
  [../]
  [./f_shear]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 0
    variable = f_shear
  [../]
  [./f_tensile]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 1
    variable = f_tensile
  [../]
  [./f_compressive]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 2
    variable = f_compressive
  [../]
  [./intnl_shear]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 0
    variable = intnl_shear
  [../]
  [./intnl_tensile]
    type = MaterialStdVectorAux
    property = plastic_internal_parameter
    index = 1
    variable = intnl_tensile
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
  [./ls]
    type = MaterialRealAux
    property = plastic_linesearch_needed
    variable = ls
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./tanphi]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
  [./tanpsi]
    type = TensorMechanicsHardeningConstant
    value = 0.166666666667
  [../]
  [./t_strength]
    type = TensorMechanicsHardeningConstant
    value = 1E80
  [../]
  [./c_strength]
    type = TensorMechanicsHardeningConstant
    value = 0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '6.4E9 6.4E9'  # young 16MPa, Poisson 0.25
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
  [../]
  [./admissible]
    type = ComputeMultipleInelasticStress
    inelastic_models = stress
    perform_finite_strain_rotations = false
  [../]
  [./stress]
    type = CappedWeakPlaneStressUpdate
    cohesion = coh
    tan_friction_angle = tanphi
    tan_dilation_angle = tanpsi
    tensile_strength = t_strength
    compressive_strength = c_strength
    tip_smoother = 0.5E6
    smoothing_tol = 0.5E6
    yield_function_tol = 1E-2
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = density
    prop_values = 1E4
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options = '-snes_converged_reason -snes_linesearch_monitor'
    petsc_options_iname = '-pc_type -pc_asm_overlap -sub_pc_type -ksp_type -ksp_gmres_restart'
    petsc_options_value = ' asm      2              lu            gmres     200'
  [../]
[]

[Executioner]
  solve_type = 'NEWTON'
  petsc_options = '-snes_converged_reason'
  line_search = bt
  nl_abs_tol = 1E1
  nl_rel_tol = 1e-5
  l_tol = 1E-10

  l_max_its = 100
  nl_max_its = 100

  end_time = 0.5
  dt = 0.1
  type = Transient
[]

[Outputs]
  file_base = push_and_shear
  exodus = true
  csv = true
[]

test/tests/multiapps/picard/picard_abs_tol_master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./v]
  [../]
[]

[Kernels]
  [./diff]
    type = CoefDiffusion
    variable = u
    coef = 0.1
  [../]
  [./time]
    type = TimeDerivative
    variable = u
  [../]
  [./force_u]
    type = CoupledForce
    variable = u
    v = v
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 20
  dt = 0.1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  nl_abs_tol = 1e-12
  picard_max_its = 10
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    positions = '0 0 0'
    input_files = picard_sub.i
  [../]
[]

[Transfers]
  [./v_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = v
    variable = v
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u
  [../]
[]

modules/tensor_mechanics/test/tests/beam/dynamic/dyn_euler_small.i

# Test for small strain euler beam vibration in y direction

# An impulse load is applied at the end of a cantilever beam of length 4m.
# The properties of the cantilever beam are as follows:
# Young's modulus (E) = 1e4
# Shear modulus (G) = 4e7
# Shear coefficient (k) = 1.0
# Cross-section area (A) = 0.01
# Iy = 1e-4 = Iz
# Length (L)= 4 m
# density (rho) = 1.0

# For this beam, the dimensionless parameter alpha = kAGL^2/EI = 6.4e6
# Therefore, the beam behaves like a Euler-Bernoulli beam.

# The theoretical first and third frequencies of this beam are:
# f1 = 1/(2 pi) * (3.5156/L^2) * sqrt(EI/rho)
# f2 = 6.268 f1

# This implies that the corresponding time period of this beam are 2.858 s and 0.455s

# The FEM solution for this beam with 10 element gives time periods of 2.856 s and 0.4505s with a time step of 0.01.
# A smaller time step is required to obtain a closer match for the lower time periods/higher frequencies.
# A higher time step of 0.05 is used in this test to reduce testing time.

# The time history from this analysis matches with that obtained from Abaqus.

# Values from the first few time steps are as follows:
# time       disp_y            vel_y            accel_y
# 0     0.0                  0.0                0.0
# 0.05  0.0016523559162602   0.066094236650407  2.6437694660163
# 0.1   0.0051691308901533   0.07457676230532  -2.3044684398197
# 0.15  0.0078956772343372   0.03448509146203   4.7008016060883
# 0.2   0.0096592517031463   0.03605788729033  -0.63788977295649
# 0.25  0.011069233444348    0.020341382357756  0.0092295756535376

[Mesh]
  type = GeneratedMesh
  xmin = 0.0
  xmax = 4.0
  dim = 1
  nx = 10
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./rot_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_vel_z]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_x]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_y]
  order = FIRST
  family = LAGRANGE
  [../]
  [./rot_accel_z]
  order = FIRST
  family = LAGRANGE
  [../]
[]

[AuxKernels]
  [./accel_x]
    type = NewmarkAccelAux
    variable = accel_x
    displacement = disp_x
    velocity = vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_x]
    type = NewmarkVelAux
    variable = vel_x
    acceleration = accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_y]
    type = NewmarkAccelAux
    variable = accel_y
    displacement = disp_y
    velocity = vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_y]
    type = NewmarkVelAux
    variable = vel_y
    acceleration = accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./accel_z]
    type = NewmarkAccelAux
    variable = accel_z
    displacement = disp_z
    velocity = vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./vel_z]
    type = NewmarkVelAux
    variable = vel_z
    acceleration = accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./rot_accel_x]
    type = NewmarkAccelAux
    variable = rot_accel_x
    displacement = rot_x
    velocity = rot_vel_x
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./rot_vel_x]
    type = NewmarkVelAux
    variable = rot_vel_x
    acceleration = rot_accel_x
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./rot_accel_y]
    type = NewmarkAccelAux
    variable = rot_accel_y
    displacement = rot_y
    velocity = rot_vel_y
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./rot_vel_y]
    type = NewmarkVelAux
    variable = rot_vel_y
    acceleration = rot_accel_y
    gamma = 0.5
    execute_on = timestep_end
  [../]
  [./rot_accel_z]
    type = NewmarkAccelAux
    variable = rot_accel_z
    displacement = rot_z
    velocity = rot_vel_z
    beta = 0.25
    execute_on = timestep_end
  [../]
  [./rot_vel_z]
    type = NewmarkVelAux
    variable = rot_vel_z
    acceleration = rot_accel_z
    gamma = 0.5
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = left
    value = 0.0
  [../]
  [./fixz1]
    type = DirichletBC
    variable = disp_z
    boundary = left
    value = 0.0
  [../]
  [./fixr1]
    type = DirichletBC
    variable = rot_x
    boundary = left
    value = 0.0
  [../]
  [./fixr2]
    type = DirichletBC
    variable = rot_y
    boundary = left
    value = 0.0
  [../]
  [./fixr3]
    type = DirichletBC
    variable = rot_z
    boundary = left
    value = 0.0
  [../]
[]

[NodalKernels]
  [./force_y2]
    type = UserForcingFunctionNodalKernel
    variable = disp_y
    boundary = right
    function = force
  [../]
[]

[Functions]
  [./force]
    type = PiecewiseLinear
    x = '0.0 0.05 0.1 10.0'
    y = '0.0 0.01  0.0  0.0'
  [../]
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON

  dt = 0.05
  end_time = 5.0
  timestep_tolerance = 1e-6
[]

[Kernels]
  [./solid_disp_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 0
    variable = disp_x
  [../]
  [./solid_disp_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 1
    variable = disp_y
  [../]
  [./solid_disp_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 2
    variable = disp_z
  [../]
  [./solid_rot_x]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 3
    variable = rot_x
  [../]
  [./solid_rot_y]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 4
    variable = rot_y
  [../]
  [./solid_rot_z]
    type = StressDivergenceBeam
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    component = 5
    variable = rot_z
  [../]
  [./inertial_force_x]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 0
    variable = disp_x
  [../]
  [./inertial_force_y]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 1
    variable = disp_y
  [../]
  [./inertial_force_z]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 2
    variable = disp_z
  [../]
  [./inertial_force_rot_x]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 3
    variable = rot_x
  [../]
  [./inertial_force_rot_y]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 4
    variable = rot_y
  [../]
  [./inertial_force_rot_z]
    type = InertialForceBeam
    block = 0
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    velocities = 'vel_x vel_y vel_z'
    accelerations = 'accel_x accel_y accel_z'
    rotational_velocities = 'rot_vel_x rot_vel_y rot_vel_z'
    rotational_accelerations = 'rot_accel_x rot_accel_y rot_accel_z'
    beta = 0.25
    gamma = 0.5
    area = 0.01
    Iy = 1e-4
    Iz = 1e-4
    Ay = 0.0
    Az = 0.0
    component = 5
    variable = rot_z
  [../]
[]

[Materials]
  [./elasticity]
    type = ComputeElasticityBeam
    youngs_modulus = 1.0e4
    poissons_ratio = -0.999875
    shear_coefficient = 1.0
    block = 0
  [../]
  [./strain]
    type = ComputeIncrementalBeamStrain
    block = '0'
    displacements = 'disp_x disp_y disp_z'
    rotations = 'rot_x rot_y rot_z'
    area = 0.01
    Ay = 0.0
    Az = 0.0
    Iy = 1.0e-4
    Iz = 1.0e-4
    y_orientation = '0.0 1.0 0.0'
  [../]
  [./stress]
    type = ComputeBeamResultants
    block = 0
  [../]
  [./density]
    type = GenericConstantMaterial
    block = 0
    prop_names = 'density'
    prop_values = '1.0'
  [../]
[]

[Postprocessors]
  [./disp_x]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_x
  [../]
  [./disp_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = disp_y
  [../]
  [./vel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = vel_y
  [../]
  [./accel_y]
    type = PointValue
    point = '4.0 0.0 0.0'
    variable = accel_y
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  perf_graph = true
[]

modules/functional_expansion_tools/examples/3D_volumetric_Cartesian_different_submesh/main.i

# Derived from the example '3D_volumetric_Cartesian' with the following differences:
#
#   1) The number of x and y divisions in the sub app is not the same as the master app
#   2) The subapp mesh is skewed in x and z
[Mesh]
  type = GeneratedMesh
  dim = 3

  xmin = 0.0
  xmax = 10.0
  nx = 15

  ymin = 1.0
  ymax = 11.0
  ny = 25

  zmin = 2.0
  zmax = 12.0
  nz = 35
[]

[Variables]
  [./m]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./s_in]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./diff_m]
    type = HeatConduction
    variable = m
  [../]
  [./time_diff_m]
    type = HeatConductionTimeDerivative
    variable = m
  [../]
  [./s_in] # Add in the contribution from the SubApp
    type = CoupledForce
    variable = m
    v = s_in
  [../]
[]

[AuxKernels]
  [./reconstruct_s_in]
    type = FunctionSeriesToAux
    variable = s_in
    function = FX_Basis_Value_Main
  [../]
[]

[Materials]
  [./Unobtanium]
    type = GenericConstantMaterial
    prop_names =  'thermal_conductivity specific_heat density'
    prop_values = '1.0                  1.0           1.0' # W/(cm K), J/(g K), g/cm^3
  [../]
[]

[ICs]
  [./start_m]
    type = ConstantIC
    variable = m
    value = 1
  [../]
[]

[BCs]
  [./surround]
    type = DirichletBC
    variable = m
    value = 1
    boundary = 'top bottom left right front back'
  [../]
[]

[Functions]
  [./FX_Basis_Value_Main]
    type = FunctionSeries
    series_type = Cartesian
    orders = '3   4   5'
    physical_bounds = '0.0  10.0    1.0 11.0    2.0 12.0'
    x = Legendre
    y = Legendre
    z = Legendre
  [../]
[]

[UserObjects]
  [./FX_Value_UserObject_Main]
    type = FXVolumeUserObject
    function = FX_Basis_Value_Main
    variable = m
  [../]
[]

[Postprocessors]
  [./average_value]
    type = ElementAverageValue
    variable = m
  [../]
  [./peak_value]
    type = ElementExtremeValue
    value_type = max
    variable = m
  [../]
  [./picard_iterations]
    type = NumPicardIterations
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.5
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  picard_max_its = 30
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-9
  picard_rel_tol = 1e-8
  picard_abs_tol = 1e-9
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./FXTransferApp]
    type = TransientMultiApp
    input_files = sub.i
  [../]
[]

[Transfers]
  [./ValueToSub]
    type = MultiAppFXTransfer
    direction = to_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Value_UserObject_Main
    multi_app_object_name = FX_Basis_Value_Sub
  [../]
  [./ValueToMe]
    type = MultiAppFXTransfer
    direction = from_multiapp
    multi_app = FXTransferApp
    this_app_object_name = FX_Basis_Value_Main
    multi_app_object_name = FX_Value_UserObject_Sub
  [../]
[]

test/tests/time_integrators/rk-2/1d-linear.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  xmin = -1
  xmax = 1
  nx = 20
  elem_type = EDGE2
[]

[Functions]
  [./ic]
    type = ParsedFunction
    value = 0
  [../]

  [./forcing_fn]
    type = ParsedFunction
    value = x
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*x
  [../]
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = ic
    [../]
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
    implicit = true
  [../]

  [./diff]
    type = Diffusion
    variable = u
    implicit = false
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
    implicit = false
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  [./TimeIntegrator]
    type = ExplicitMidpoint
  [../]
  solve_type = 'LINEAR'

  start_time = 0.0
  num_steps = 10
  dt = 0.001
  l_tol = 1e-15
[]

[Outputs]
  exodus = true
  perf_graph = true
[]

test/tests/transfers/multiapp_mesh_function_transfer/tosub_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmax = 0.2
  ymax = 0.2
  displacements = 'x_disp y_disp'
[]

[Variables]
  [./sub_u]
  [../]
[]

[AuxVariables]
  [./transferred_u]
  [../]
  [./elemental_transferred_u]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./x_disp]
    initial_condition = .2
  [../]
  [./y_disp]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = sub_u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = sub_u
    boundary = left
    value = 1
  [../]
  [./right]
    type = DirichletBC
    variable = sub_u
    boundary = right
    value = 4
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/richards/test/tests/jacobian_2/jn06.i

# two phase
# unsaturated = true

# gravity = true
# supg = false
# transient = true

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -1
  xmax = 1
  ymin = -1
  ymax = 1
  zmin = -1
  zmax = 1
[]

[GlobalParams]
  richardsVarNames_UO = PPNames
[]

[UserObjects]
  [./PPNames]
    type = RichardsVarNames
    richards_vars = 'pwater pgas'
  [../]
  [./DensityWater]
    type = RichardsDensityConstBulk
    dens0 = 1
    bulk_mod = 1.0 # notice small quantity, so the PETSc constant state works
  [../]
  [./DensityGas]
    type = RichardsDensityConstBulk
    dens0 = 0.5
    bulk_mod = 0.5 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffWater]
    type = RichardsSeff2waterVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./SeffGas]
    type = RichardsSeff2gasVG
    m = 0.8
    al = 1 # notice small quantity, so the PETSc constant state works
  [../]
  [./RelPermWater]
    type = RichardsRelPermPower
    simm = 0.2
    n = 2
  [../]
  [./RelPermGas]
    type = RichardsRelPermPower
    simm = 0.1
    n = 3
  [../]
  [./SatWater]
    type = RichardsSat
    s_res = 0.1
    sum_s_res = 0.15
  [../]
  [./SatGas]
    type = RichardsSat
    s_res = 0.05
    sum_s_res = 0.15
  [../]
  [./SUPGwater]
    type = RichardsSUPGnone
  [../]
  [./SUPGgas]
    type = RichardsSUPGnone
  [../]
[]

[Variables]
  [./pwater]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = -1
      max = 0
    [../]
  [../]
  [./pgas]
    order = FIRST
    family = LAGRANGE
    [./InitialCondition]
      type = RandomIC
      block = 0
      min = 0
      max = 1
    [../]
  [../]
[]


[Kernels]
  active = 'richardsfwater richardstwater richardsfgas richardstgas'
  [./richardstwater]
    type = RichardsMassChange
    variable = pwater
  [../]
  [./richardsfwater]
    type = RichardsFlux
    variable = pwater
  [../]
  [./richardstgas]
    type = RichardsMassChange
    variable = pgas
  [../]
  [./richardsfgas]
    type = RichardsFlux
    variable = pgas
  [../]
[]

[Materials]
  [./rock]
    type = RichardsMaterial
    block = 0
    mat_porosity = 0.1
    mat_permeability = '1E-5 0 0  0 1E-5 0  0 0 1E-5'
    density_UO = 'DensityWater DensityGas'
    relperm_UO = 'RelPermWater RelPermGas'
    SUPG_UO = 'SUPGwater SUPGgas'
    sat_UO = 'SatWater SatGas'
    seff_UO = 'SeffWater SeffGas'
    viscosity = '1E-3 0.5E-3'
    gravity = '1 2 3'
    linear_shape_fcns = true
  [../]
[]


[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  dt = 1E-5
[]

[Outputs]
  execute_on = 'timestep_end'
  file_base = jn06
  exodus = false
[]

modules/combined/test/tests/internal_volume/hex20.i

#
# Internal Volume Test
#
# This test is designed to compute the internal volume of a space considering
#   an embedded volume inside.
#
# The mesh is composed of one block (1) with an interior cavity of volume 8.
#   Block 2 sits in the cavity and has a volume of 1.  Thus, the total volume
#   is 7.
#
[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = meshes/hex20.e
[]

[Functions]
  [./step]
    type = PiecewiseLinear
    x = '0. 1. 2. 3.'
    y = '0. 0. 1e-2 0.'
    scale_factor = 0.5
  [../]
[]

[Variables]
  [./disp_x]
    order = SECOND
    family = LAGRANGE
  [../]

  [./disp_y]
    order = SECOND
    family = LAGRANGE
  [../]

  [./disp_z]
    order = SECOND
    family = LAGRANGE
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    incremental = true
    strain = FINITE
  [../]
[]

[BCs]
  [./no_x]
    type = DirichletBC
    variable = disp_x
    boundary = 100
    value = 0.0
  [../]

  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = 100
    value = 0.0
  [../]

  [./prescribed_z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 100
    function = step
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = '1 2'
    youngs_modulus = 1e6
    poissons_ratio = 0.3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
    block = '1 2'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  []
[]

[Executioner]
  type = Transient
  solve_type = PJFNK

  start_time = 0.0
  dt = 1.0
  end_time = 3.0

  [./Quadrature]
    order = THIRD
  [../]
[]

[Postprocessors]
  [./internalVolume]
    type = InternalVolume
    boundary = 100
    execute_on = 'initial timestep_end'
  [../]

  [./dispZ]
    type = ElementAverageValue
    block = '1 2'
    variable = disp_z
  [../]
[]

[Outputs]
  exodus = true
  csv = true
[]

modules/contact/test/tests/bouncing-block-contact/frictionless-nodal-min-lm-nodal-disp.i

starting_point = 2e-1
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
  scaling = 1e0
[]

[Mesh]
  file = long-bottom-block-1elem-blocks.e
[]

[Problem]
  kernel_coverage_check = false
[]

[Variables]
  [./disp_x]
    block = '1 2'
  [../]
  [./disp_y]
    block = '1 2'
  [../]
  [./normal_lm]
    block = 3
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [./lm]
    type = NormalNodalLMMechanicalContact
    slave = 10
    master = 20
    variable = normal_lm
    master_variable = disp_x
    disp_y = disp_y
  [../]
  [./disp_x]
    type = NormalNodalMechanicalContact
    slave = 10
    master = 20
    variable = disp_x
    master_variable = disp_x
    lambda = normal_lm
    component = x
  [../]
  [./disp_y]
    type = NormalNodalMechanicalContact
    slave = 10
    master = 20
    variable = disp_y
    master_variable = disp_y
    lambda = normal_lm
    component = y
  [../]
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
  [dof]
    type = DOFMap
    execute_on = 'initial'
  []
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  active = 'num_nl cumulative contact'
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '3'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/tensor_mechanics/test/tests/stickyBC/push_up.i

# Testing StickyBC
#
# Push the bottom of an element upward until the top hits an (invisible) obstruction.
# 10 timesteps are used.  In each timestep disp_y is increased by 0.1.  The
# StickyBC has a max_value of 0.49, so at timestep 5 this bound will be violated
# and the top boundary will be fixed forever after.
#
# This test also illustrates that StickyBC is only ever meant to be used in
# special situations:
# - if, after the simulation ends, the bottom is moved downward again, the StickyBC
#   will keep the top fixed.  Ie, the StickyBC is truly "sticky".
# - setting max_value = 0.5 in this test illustrates the "approximate" nature
#   of StickyBC, in that some nodes will be fixed at disp_y=0.5, while others
#   will be fixed at disp_y=0.6, due to the timestepping and roundoff errors
#   in MOOSE's solution.
[Mesh]
  type = GeneratedMesh
  dim = 3
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
  [../]
[]

[BCs]
  [./obstruction]
    type = StickyBC
    variable = disp_y
    boundary = top
    max_value = 0.49
  [../]
  [./bottom]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = bottom
    function = t
  [../]
  [./left]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0
  [../]
  [./front]
    type = DirichletBC
    variable = disp_z
    boundary = front
    value = 0
  [../]
[]

[Materials]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 1.0
    poissons_ratio = 0.2
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Linear
  dt = 0.1
  end_time = 1.0
[]

[Outputs]
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/tensile_update7.i

# Tensile, update version, with strength = 1MPa and smoothing_tol = 0.1E5
# Lame lambda = 1GPa.  Lame mu = 1.3GPa
# Units in this file are MPa (not Pa)
#
# Start from non-diagonal stress state with softening.
# Returns to close to the edge of tensile yield

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningCubic
    value_0 = 1
    value_residual = 0.5
    internal_limit = 2E-2
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    lambda = 0.5E3
    shear_modulus = 1.0E3
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '-1 0.1 0.2  0.1 15 -0.3  0.2 -0.3 14'
    eigenstrain_name = ini_stress
  [../]
  [./tensile]
    type = TensileStressUpdate
    tensile_strength = ts
    smoothing_tol = 0.1
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-snes_type'
    petsc_options_value = 'test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

modules/combined/test/tests/mechanical_contact_constraint/blocks_2d/sm/frictionless_penalty_sm.i

[Mesh]
  file = blocks_2d.e
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    #Initial gap is 0.01
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e7
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type'
  petsc_options_value = 'lu'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.01
  end_time = 0.10
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-8
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    system = Constraint
    master = 2
    slave = 3
    model = frictionless
    formulation = penalty
    penalty = 1e+7
  [../]
[]

test/tests/transfers/transfer_with_reset/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  # This test currently diffs when run in parallel with DistributedMesh enabled,
  # most likely due to the fact that it uses some geometric search stuff.
  # For more information, see #2121.
  parallel_type = replicated
[]

[Variables]
  [./u]
  [../]
[]

[AuxVariables]
  [./t]
  [../]
  [./u_from_sub]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./td]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 10
  dt = 0.01

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

[MultiApps]
  [./sub]
    type = TransientMultiApp
    app_type = MooseTestApp
    execute_on = timestep_end
    positions = '0 0 0'
    input_files = sub.i
    reset_apps = 0
    reset_time = 0.05
  [../]
[]

[Transfers]
  [./t_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = t
    variable = t
  [../]
  [./u_from_sub]
    type = MultiAppNearestNodeTransfer
    direction = from_multiapp
    multi_app = sub
    source_variable = u
    variable = u_from_sub
  [../]
  [./u_to_sub]
    type = MultiAppNearestNodeTransfer
    direction = to_multiapp
    multi_app = sub
    source_variable = u
    variable = u_from_master
  [../]
[]

modules/tensor_mechanics/test/tests/capped_mohr_coulomb/small_deform15.i

# Using CappedMohrCoulomb with compressive failure only
# A single element is incrementally compressed in the z and x directions
# This causes the return direction to be along the hypersurface sigma_I = 0
# and the resulting stresses are checked to lie on the expected yield surface

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Modules/TensorMechanics/Master]
  [./all]
    add_variables = true
    incremental = true
    generate_output = 'max_principal_stress mid_principal_stress min_principal_stress stress_xx stress_xy stress_xz stress_yy stress_yz stress_zz'
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '-2*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '-0.5*z*(t+1.5*t*t)'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    property = plastic_yield_function
    index = 3
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_I]
    type = PointValue
    point = '0 0 0'
    variable = max_principal_stress
  [../]
  [./s_II]
    type = PointValue
    point = '0 0 0'
    variable = mid_principal_stress
  [../]
  [./s_III]
    type = PointValue
    point = '0 0 0'
    variable = min_principal_stress
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./ts]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./cs]
    type = TensorMechanicsHardeningConstant
    value = 1
  [../]
  [./coh]
    type = TensorMechanicsHardeningConstant
    value = 1E6
  [../]
  [./ang]
    type = TensorMechanicsHardeningConstant
    value = 0.5
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 2.0'
  [../]
  [./tensile]
    type = CappedMohrCoulombStressUpdate
    tensile_strength = ts
    compressive_strength = cs
    cohesion = coh
    friction_angle = ang
    dilation_angle = ang
    smoothing_tol = 0.5
    yield_function_tol = 1.0E-12
  [../]
  [./stress]
    type = ComputeMultipleInelasticStress
    inelastic_models = tensile
    perform_finite_strain_rotations = false
  [../]
[]


[Executioner]
  end_time = 1
  dt = 0.1
  type = Transient
[]


[Outputs]
  file_base = small_deform15
  csv = true
[]

modules/phase_field/examples/grain_growth/grain_growth_2D_random.i

# This output simulations the shrinkage of a circular grain imbedded in a larger grain
# Simulation is 2-D
# Mesh adaptivity and time step adaptivity are used
# An AuxVariable is used to calculate the grain boundary locations
# Postprocessors are used to record time step and the area of the shrinking grain

[Mesh]
  # Mesh block.  Meshes can be read in or automatically generated
  type = GeneratedMesh
  dim = 2 # Problem dimension
  nx = 10 # Number of elements in the x-direction
  ny = 10 # Number of elements in the y-direction
  nz = 0 # Number of elements in the z-direction
  xmin = 0    # minimum x-coordinate of the mesh
  xmax = 1000 # maximum x-coordinate of the mesh
  ymin = 0    # minimum y-coordinate of the mesh
  ymax = 1000 # maximum y-coordinate of the mesh
  zmin = 0
  zmax = 0
  elem_type = QUAD4 # Type of elements used in the mesh
  uniform_refine = 4 # Initial uniform refinement of the mesh

  parallel_type = replicated # Periodic BCs
[]

[GlobalParams]
  # Parameters used by several kernels that are defined globally to simplify input file
  op_num = 10 # Number of grains
  var_name_base = gr # Base name of grains
[]

[Variables]
  # Variable block, where all variables in the simulation are declared
  [./PolycrystalVariables]
    # Custom action that created all of the grain variables and sets their initial condition
  [../]
[]

[AuxVariables]
  # Dependent variables
  [./bnds]
    # Variable used to visualize the grain boundaries in the simulation
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./PolycrystalICs]
    [./PolycrystalRandomIC]
      random_type = discrete
    [../]
  [../]
[]

[Kernels]
  # Kernel block, where the kernels defining the residual equations are set up.
  [./PolycrystalKernel]
    # Custom action creating all necessary kernels for grain growth.  All input parameters are up in GlobalParams
  [../]
[]

[AuxKernels]
  # AuxKernel block, defining the equations used to calculate the auxvars
  [./bnds_aux]
    # AuxKernel that calculates the GB term
    type = BndsCalcAux
    variable = bnds
    execute_on = timestep_end
  [../]
[]

[BCs]
  # Boundary Condition block
  [./Periodic]
    [./top_bottom]
      auto_direction = 'x y' # Makes problem periodic in the x and y directions
    [../]
  [../]
[]

[Materials]
  [./CuGrGr]
    # Material properties
    type = GBEvolution # Quantitative material properties for copper grain growth.  Dimensions are nm and ns
    GBmob0 = 2.5e-6 # Mobility prefactor for Cu from Schonfelder1997
    GBenergy = 0.708 # GB energy for Cu from Schonfelder1997
    Q = 0.23 # Activation energy for grain growth from Schonfelder 1997
    T = 450 # Constant temperature of the simulation (for mobility calculation)
    wGB = 14 # Width of the diffuse GB
  [../]
[]

[Postprocessors]
  # Scalar postprocessors
  [./dt]
    # Outputs the current time step
    type = TimestepSize
  [../]
  [./num_nodes]
    type = NumNodes
  [../]
  [./num_grains]
    type = FeatureFloodCount
    variable = bnds
    threshold = 0.7
  [../]
[]

[Executioner]
  type = Transient # Type of executioner, here it is transient with an adaptive time step
  scheme = bdf2 # Type of time integration (2nd order backward euler), defaults to 1st order backward euler

  solve_type = PJFNK

  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre    boomeramg      101                ds'

  l_max_its = 30 # Max number of linear iterations
  l_tol = 1e-5 # Relative tolerance for linear solves
  nl_max_its = 40 # Max number of nonlinear iterations
  nl_abs_tol = 1e-9 # Relative tolerance for nonlienar solves
  nl_rel_tol = 1e-9 # Absolute tolerance for nonlienar solves

  start_time = 0.0
  end_time = 4000

  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 5 # Initial time step.  In this simulation it changes.
    optimal_iterations = 8 # Time step will adapt to maintain this number of nonlinear iterations
    growth_factor = 1.25
  [../]

  [./Adaptivity]
    # Block that turns on mesh adaptivity. Note that mesh will never coarsen beyond initial mesh (before uniform refinement)
    initial_adaptivity = 0 # Number of times mesh is adapted to initial condition
    refine_fraction = 0.7 # Fraction of high error that will be refined
    coarsen_fraction = 0.1 # Fraction of low error that will coarsened
    max_h_level = 4 # Max number of refinements used, starting from initial mesh (before uniform refinement)
  [../]
[]

[Outputs]
  exodus = true
  csv = true
  [./console]
    type = Console
    max_rows = 20
  [../]
[]

modules/xfem/test/tests/single_var_constraint_3d/stationary_equal_3d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
[]

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 5
  ny = 5
  nz = 2
  xmin = 0.0
  xmax = 1.0
  ymin = 0.0
  ymax = 1.0
  zmin = 0.0
  zmax = 0.25
  elem_type = HEX8
[]

[XFEM]
  qrule = volfrac
  output_cut_plane = true
[]

[UserObjects]
  [./square_planar_cut_uo]
    type = RectangleCutUserObject
    cut_data = ' 0.5 -0.001 -0.001
                 0.5  1.001 -0.001
                 0.5  1.001  1.001
                 0.5 -0.001  1.001'
  [../]
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[Constraints]
  [./xfem_constraint]
    type = XFEMSingleVariableConstraint
    variable = u
    jump = 0
    jump_flux = 0
    geometric_cut_userobject = 'square_planar_cut_uo'
  [../]
[]

[BCs]
# Define boundary conditions
  [./left_u]
    type = DirichletBC
    variable = u
    boundary = left
    value = 1
  [../]

  [./right_u]
    type = DirichletBC
    variable = u
    boundary = right
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
  line_search = 'none'

  l_tol = 1e-3
  nl_max_its = 15
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-10

  start_time = 0.0
  dt = 1.0
  end_time = 2.0
[]

[Outputs]
  interval = 1
  execute_on = timestep_end
  exodus = true
  [./console]
    type = Console
    output_linear = true
  [../]
[]

modules/solid_mechanics/examples/bridge/bridge_large_strain.i

#
# Bridge linear elasticity example
#
# This example models a bridge using linear elasticity.
# It can be either steel or concrete.
# Gravity is applied
# A pressure of 0.5 MPa is also applied
#
[GlobalParams]
  disp_x = disp_x
  disp_y = disp_y
  disp_z = disp_z
[]

[Mesh]
  displacements = 'disp_x disp_y disp_z' #Define displacements for deformed mesh
  type = FileMesh #Read in mesh from file
  file = ../../../tensor_mechanics/examples/bridge/bridge.e

  boundary_id = '1 2 3 4 5 6' #Assign names to boundaries to make things clearer
  boundary_name = 'top left right bottom1 bottom2 bottom3'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[SolidMechanics]
  [./solid]
  [../]
[]

[Kernels]
  [./gravity_y]
    #Gravity is applied to bridge
    type = Gravity
    variable = disp_y
    value = -9.81
  [../]
[]

[AuxVariables]
  [./von_mises]
    #Dependent variable used to visualize the Von Mises stress
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./von_mises_kernel]
    #Calculates the von mises stress and assigns it to von_mises
    type = MaterialTensorAux
    variable = von_mises
    tensor = stress
    execute_on = timestep_end
    quantity = VonMises
  [../]
[]

[BCs]
  [./Pressure]
    [./load]
      #Applies the pressure
      boundary = top
      factor = 5e5 # Pa
    [../]
  [../]
  [./anchor_x]
    #Anchors the bottom and sides against deformation in the x-direction
    type = DirichletBC
    variable = disp_x
    boundary = 'left right bottom1 bottom2 bottom3'
    value = 0.0
  [../]
  [./anchor_y]
    #Anchors the bottom and sides against deformation in the y-direction
    type = DirichletBC
    variable = disp_y
    boundary = 'left right bottom1 bottom2 bottom3'
    value = 0.0
  [../]
  [./anchor_z]
    #Anchors the bottom and sides against deformation in the z-direction
    type = DirichletBC
    variable = disp_z
    boundary = 'left right bottom1 bottom2 bottom3'
    value = 0.0
  [../]
[]

[Materials]
  [./steel_elastic]
    type = Elastic
    block = 1
    youngs_modulus = 210e9 #Pa
    poissons_ratio = 0.3
    formulation = Nonlinear3D
  [../]

  [./density_steel]
    #Defines the density of steel
    type = GenericConstantMaterial
    block = 1
    prop_names = density
    prop_values = 7850 # kg/m^3
  [../]
[]

[Preconditioning]
  [./SMP]
    #Creates the entire Jacobian, for the Newton solve
    type = SMP
    full = true
  [../]
[]

[Executioner]
  #We solve a steady state problem using Newton's iteration
  type = Transient
  solve_type = NEWTON
  nl_rel_tol = 1e-9
  l_max_its = 30
  l_tol = 1e-4
  nl_max_its = 10
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre boomeramg 31'
  dt = 0.1
  num_steps = 1
[]

[Outputs]
  [./exodus]
    #Outputs the result to an exodus file and converts the element stress output to a nodal output
    type = Exodus
    elemental_as_nodal = true
  [../]
[]

test/tests/test_harness/exception_transient.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 2
  ny = 2
[]

[Variables]
  [./u]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Kernels]
  [./exception]
    type = ExceptionKernel
    variable = u
    when = residual

    # This exception won't be caught and will crash the simulation
    throw_std_exception = true
  [../]
  [./diff]
    type = Diffusion
    variable = u
  [../]
  [./time_deriv]
    type = TimeDerivative
    variable = u
  [../]
[]

[BCs]
  [./right]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 2
    value = 1
  [../]
  [./right2]
    type = DirichletBC
    variable = u
    preset = false
    boundary = 1
    value = 0
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  dtmin = 0.005
  solve_type = 'PJFNK'
[]

[Outputs]
  exodus = true
[]

test/tests/transfers/multiapp_variable_value_sample_transfer/pp_sub.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./diff]
    type = Diffusion
    variable = u
  [../]
[]

[BCs]
  [./left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  [../]
  [./right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 2
  [../]
[]

[Postprocessors]
  [./from_master]
    type = Receiver
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 1

  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/TotalFreeEnergy/TotalFreeEnergy_test.i

#
# Test the TotalFreeEnergy auxkernel, which outputs both the sum of the bulk and interfacial free energies. This test has only one variable.
#

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 30
  ny = 30
  nz = 0
  xmin = 0
  xmax = 250
  ymin = 0
  ymax = 250
  zmin = 0
  zmax = 0
  elem_type = QUAD4
[]

[Variables]
  [./c]
  [../]
  [./w]
  [../]
[]

[AuxVariables]
  [./local_free_energy]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[ICs]
  [./cIC]
    type = SmoothCircleIC
    variable = c
    x1 = 125.0
    y1 = 125.0
    radius = 60.0
    invalue = 1.0
    outvalue = 0.1
    int_width = 30.0
  [../]
[]

[Kernels]
  [./c_res]
    type = SplitCHParsed
    variable = c
    f_name = F
    kappa_name = kappa_c
    w = w
  [../]
  [./w_res]
    type = SplitCHWRes
    variable = w
    mob_name = M
  [../]
  [./time]
    type = CoupledTimeDerivative
    variable = w
    v = c
  [../]
[]

[AuxKernels]
  [./local_free_energy]
    type = TotalFreeEnergy
    variable = local_free_energy
    kappa_names = kappa_c
    interfacial_vars = c
  [../]
[]

[Materials]
  [./pfmobility]
    type = GenericConstantMaterial
    prop_names  = 'M kappa_c'
    prop_values = '1e-3 0.1'
  [../]
  [./free_energy]
    type = DerivativeParsedMaterial
    args = c
    constant_names = 'barr_height  cv_eq'
    constant_expressions = '0.1          1.0e-2'
    function = 16*barr_height*(c-cv_eq)^2*(1-cv_eq-c)^2
    derivative_order = 2
  [../]
[]

[Postprocessors]
  [./total_free_energy]
    type = ElementIntegralVariablePostprocessor
    variable = local_free_energy
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = NEWTON
  petsc_options_iname = -pc_type
  petsc_options_value = lu
  l_max_its = 30
  l_tol = 1.0e-4
  nl_rel_tol = 1.0e-10
  start_time = 0.0
  num_steps = 6
  dt = 200
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus = true
[]

modules/tensor_mechanics/test/tests/jacobian/cto04.i

# checking jacobian for 3-plane linear plasticity using SimpleTester.
#
# This is like the test multi/three_surface00.i
# Plastic models:
# SimpleTester0 with a = 0 and b = 1 and strength = 1
# SimpleTester1 with a = 1 and b = 0 and strength = 1
# SimpleTester2 with a = 1 and b = 1 and strength = 1.5
#
# Lame lambda = 0 (Poisson=0).  Lame mu = 0.5E6
#
# trial stress_yy = 1 and stress_zz = 1
#
# Then SimpleTester2 should activate and the algorithm will return to
# stress_yy = 0.75, stress_zz = 0.75
# internal2 should be 0.25E-6

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]

[GlobalParams]
  block = 0
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]

[UserObjects]
  [./simple0]
    type = TensorMechanicsPlasticSimpleTester
    a = 0
    b = 1
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple1]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 0
    strength = 1
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
  [./simple2]
    type = TensorMechanicsPlasticSimpleTester
    a = 1
    b = 1
    strength = 1.5
    yield_function_tolerance = 1.0E-9
    internal_constraint_tolerance = 1.0E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    fill_method = symmetric_isotropic
    C_ijkl = '0 0.5E6'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    displacements = 'disp_x disp_y disp_z'
    eigenstrain_names = ini_stress
  [../]
  [./ini_stress]
    type = ComputeEigenstrainFromInitialStress
    initial_stress = '0 0 0  0 1 0  0 0 1'
    eigenstrain_name = ini_stress
  [../]
  [./multi]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-9
    plastic_models = 'simple0 simple1 simple2'
    tangent_operator = linear
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
    full = true
    petsc_options_iname = '-ksp_type -pc_type -snes_atol -snes_rtol -snes_max_it -snes_type'
    petsc_options_value = 'bcgs bjacobi 1E-15 1E-10 10000 test'
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
[]

test/tests/transfers/multiapp_copy_transfer/third_monomial_from_sub/master.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
[]

[Variables]
  [./u]
    family = MONOMIAL
    order = THIRD
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[MultiApps]
  [./sub]
    type = FullSolveMultiApp
    input_files = sub.i
    execute_on = initial
  [../]
[]

[Transfers]
  [./from_sub]
    type = MultiAppCopyTransfer
    direction = from_multiapp
    source_variable = aux
    variable = u
    multi_app = sub
  [../]
[]

[Outputs]
  exodus = true
[]

test/tests/time_integrators/dirk/dirk-2d-heat.i

#
# Testing a solution that is second order in space and first order in time.
#

[Mesh]
  type = GeneratedMesh
  dim  = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 1
  nx   = 20
  ny   = 20
  elem_type = QUAD9
[]

[Variables]
  [./u]
    order = SECOND
    family = LAGRANGE

    [./InitialCondition]
      type = FunctionIC
      function = exact_fn
    [../]
  [../]
[]

[Functions]
  [./forcing_fn]
    type = ParsedFunction
    value = ((x*x)+(y*y))-(4*t)
  [../]

  [./exact_fn]
    type = ParsedFunction
    value = t*((x*x)+(y*y))
  [../]
[]

[Kernels]
  [./ie]
    type = TimeDerivative
    variable = u
  [../]

  [./diff]
    type = Diffusion
    variable = u
  [../]

  [./ffn]
    type = BodyForce
    variable = u
    function = forcing_fn
  [../]
[]

[BCs]
  [./all]
    type = FunctionDirichletBC
    variable = u
    boundary = '0 1 2 3'
    function = exact_fn
  [../]
[]

[Postprocessors]
  [./l2_err]
    type = ElementL2Error
    variable = u
    function = exact_fn
  [../]
[]

[Executioner]
  type = Transient

  solve_type = 'PJFNK'
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'

  start_time = 0.0
  end_time   = 1.0
  dt         = 1.0
  nl_abs_tol=1e-13
  nl_rel_tol=1e-13

  [./TimeIntegrator]
    type = LStableDirk2
  [../]
[]

[Outputs]
  execute_on = 'timestep_end'
  exodus         = true
[]

modules/tensor_mechanics/test/tests/2D_different_planes/gps_yz.i

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = square_yz_plane.e
[]

[Variables]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
  [./scalar_strain_xx]
    order = FIRST
    family = SCALAR
  [../]
[]

[AuxVariables]
  [./temp]
  [../]
  [./disp_x]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./generalized_plane_strain]
    block = 1
    strain = SMALL
    scalar_out_of_plane_strain = scalar_strain_xx
    out_of_plane_direction = x
    planar_formulation = GENERALIZED_PLANE_STRAIN
    eigenstrain_names = 'eigenstrain'
    generate_output = 'stress_xx stress_yz stress_yy stress_zz strain_xx strain_yz strain_yy strain_zz'
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = tempfunc
  [../]
[]

[Functions]
  [./tempfunc]
    type = ParsedFunction
    value = '(1-y)*t'
  [../]
[]

[BCs]
  [./bottomx]
    type = DirichletBC
    boundary = 4
    variable = disp_y
    value = 0.0
  [../]
  [./bottomy]
    type = DirichletBC
    boundary = 4
    variable = disp_z
    value = 0.0
  [../]
[]

[Materials]
  [./elastic_stress]
    type = ComputeLinearElasticStress
    block = 1
  [../]
  [./thermal_strain]
    type = ComputeThermalExpansionEigenstrain
    temperature = temp
    thermal_expansion_coeff = 0.02
    stress_free_temperature = 0.5
    eigenstrain_name = eigenstrain
  [../]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    block = 1
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Postprocessors]
  [./react_x]
    type = MaterialTensorIntegral
    use_displaced_mesh = false
    rank_two_tensor = stress
    index_i = 0
    index_j = 0
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK
  line_search = none

# controls for linear iterations
  l_max_its = 100
  l_tol = 1e-10

# controls for nonlinear iterations
  nl_max_its = 10
  nl_rel_tol = 1e-12

# time control
  start_time = 0.0
  dt = 1.0
  dtmin = 1.0
  end_time = 2.0
[]

[Outputs]
  file_base = gps_yz_small_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/drucker_prager/small_deform3_native.i

# apply repeated stretches in x z directions, and smaller stretches along the y direction,
# so that sigma_I = sigma_II,
# which means that lode angle = 30deg.
# The allows yield surface in meridional plane to be mapped out


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 1
  ny = 1
  nz = 1
  xmin = -0.5
  xmax = 0.5
  ymin = -0.5
  ymax = 0.5
  zmin = -0.5
  zmax = 0.5
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '1E-6*x*t'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '-1.35E-6*y*t'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '1E-6*z*t'
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./mc_int]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xx
    index_i = 0
    index_j = 0
  [../]
  [./stress_xy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xy
    index_i = 0
    index_j = 1
  [../]
  [./stress_xz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_xz
    index_i = 0
    index_j = 2
  [../]
  [./stress_yy]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yy
    index_i = 1
    index_j = 1
  [../]
  [./stress_yz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_yz
    index_i = 1
    index_j = 2
  [../]
  [./stress_zz]
    type = RankTwoAux
    rank_two_tensor = stress
    variable = stress_zz
    index_i = 2
    index_j = 2
  [../]
  [./mc_int_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_internal_parameter
    variable = mc_int
  [../]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
[]

[Postprocessors]
  [./s_xx]
    type = PointValue
    point = '0 0 0'
    variable = stress_xx
  [../]
  [./s_xy]
    type = PointValue
    point = '0 0 0'
    variable = stress_xy
  [../]
  [./s_xz]
    type = PointValue
    point = '0 0 0'
    variable = stress_xz
  [../]
  [./s_yy]
    type = PointValue
    point = '0 0 0'
    variable = stress_yy
  [../]
  [./s_yz]
    type = PointValue
    point = '0 0 0'
    variable = stress_yz
  [../]
  [./s_zz]
    type = PointValue
    point = '0 0 0'
    variable = stress_zz
  [../]
  [./internal]
    type = PointValue
    point = '0 0 0'
    variable = mc_int
  [../]
  [./f]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
  [../]
[]

[UserObjects]
  [./mc_coh]
    type = TensorMechanicsHardeningConstant
    value = 10
  [../]
  [./mc_phi]
    type = TensorMechanicsHardeningConstant
    value = 35
    convert_to_radians = true
  [../]
  [./mc_psi]
    type = TensorMechanicsHardeningConstant
    value = 5
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticDruckerPragerHyperbolic
    mc_cohesion = mc_coh
    mc_friction_angle = mc_phi
    mc_dilation_angle = mc_psi
    smoother = 8
    mc_interpolation_scheme = native
    yield_function_tolerance = 1E-7
    internal_constraint_tolerance = 1E-9
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0 1E7'
  [../]
  [./strain]
    type = ComputeIncrementalSmallStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-13
    plastic_models = mc
    debug_fspb = crash
  [../]
[]


[Executioner]
  end_time = 10
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = small_deform3_native
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

modules/combined/test/tests/axisymmetric_2d3d_solution_function/2d.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  disp_x = disp_x
  disp_y = disp_y
  displacements = 'disp_x disp_y'
[]

[Problem]
  coord_type = RZ
[]

[Mesh]
  file = 2d.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./temp]
    initial_condition = 400
  [../]
[]

[AuxVariables]
  [./hoop_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temp_inner_func]
    type = PiecewiseLinear
    xy_data = '0 400
               1 350'
  [../]
  [./temp_outer_func]
    type = PiecewiseLinear
    xy_data = '0 400
               1 400'
  [../]
  [./press_func]
    type = PiecewiseLinear
    xy_data = '0 15
               1 15'
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[Modules/TensorMechanics/Master]
  [./all]
    volumetric_locking_correction = true
    add_variables  = true
    incremental = true
    strain = FINITE
    eigenstrain_names = thermal_expansion
    generate_output = 'stress_xx stress_yy stress_zz vonmises_stress hydrostatic_stress'
  [../]
[]

[AuxKernels]
  [./hoop_stress]
    type = RankTwoScalarAux
    rank_two_tensor = stress
    variable = hoop_stress
    scalar_type = HoopStress
    execute_on = timestep_end
  [../]
[]

[BCs]
  [./no_y]
    type = DirichletBC
    variable = disp_y
    boundary = '1'
    value = 0.0
  [../]

  [./Pressure]
    [./internal_pressure]
      boundary = '4'
      factor = 1.e6
      function = press_func
    [../]
  [../]

  [./t_in]
    type = FunctionDirichletBC
    variable = temp
    boundary = '4'
    function = temp_inner_func
  [../]

  [./t_out]
    type = FunctionDirichletBC
    variable = temp
    boundary = '2'
    function = temp_outer_func
  [../]
[]

[Constraints]
  [./disp_y]
    type = EqualValueBoundaryConstraint
    variable = disp_y
    master = '65'
    slave = '3'
    penalty = 1e18
  [../]
[]

[Materials]
  [./thermal1]
    type = HeatConductionMaterial
    block = '1'
    thermal_conductivity = 25.0
    specific_heat = 490.0
    temp = temp
  [../]

  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 193.05e9
    poissons_ratio = 0.3
  [../]

  [./stress]
    type = ComputeFiniteStrainElasticStress
  [../]

  [./thermal_expansion]
    type = ComputeThermalExpansionEigenstrain
    thermal_expansion_coeff = 13e-6
    stress_free_temperature = 295.00
    temperature = temp
    eigenstrain_name = thermal_expansion
  [../]

  [./density]
    type = Density
    block = '1'
    density = 8000.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-ksp_snes_ew'
  petsc_options_iname = '-ksp_gmres_restart -pc_type -pc_hypre_type -pc_hypre_boomeramg_max_iter'
  petsc_options_value = ' 201                hypre    boomeramg      4'
  line_search = 'none'
  l_max_its = 25
  nl_max_its = 20
  nl_rel_tol = 1e-9
  l_tol = 1e-2

  start_time = 0.0
  dt = 1
  end_time = 1
  dtmin = 1
[]

[Outputs]
  file_base = 2d_out
  exodus = true
  [./console]
    type = Console
    max_rows = 25
  [../]
[]

modules/combined/test/tests/contact_verification/patch_tests/ring_4/ring4_template1_sm.i

[Mesh]
  file = ring4_mesh.e
[]

[GlobalParams]
  order = SECOND
  displacements = 'disp_x disp_y'
[]

[Problem]
  type = FEProblem
  coord_type = RZ
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./penetration]
  [../]
  [./saved_x]
  [../]
  [./saved_y]
  [../]
  [./diag_saved_x]
  [../]
  [./diag_saved_y]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
  [./tang_force_x]
  [../]
  [./tang_force_y]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_r = disp_x
    disp_z = disp_y
    save_in_disp_z = saved_y
    save_in_disp_r = saved_x
    diag_save_in_disp_z = diag_saved_y
    diag_save_in_disp_r = diag_saved_x
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./inc_slip_x]
    type = PenetrationAux
    variable = inc_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./inc_slip_y]
    type = PenetrationAux
    variable = inc_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_x]
    type = PenetrationAux
    variable = accum_slip_x
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./accum_slip_y]
    type = PenetrationAux
    variable = accum_slip_y
    execute_on = timestep_end
    boundary = 3
    paired_boundary = 4
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_x]
    type = PenetrationAux
    variable = tang_force_x
    quantity = tangential_force_x
    boundary = 3
    paired_boundary = 4
  [../]
  [./tang_force_y]
    type = PenetrationAux
    variable = tang_force_y
    quantity = tangential_force_y
    boundary = 3
    paired_boundary = 4
  [../]
[] # AuxKernels

[Postprocessors]
  [./bot_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 1
  [../]
  [./bot_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 1
  [../]
  [./top_react_x]
    type = NodalSum
    variable = saved_x
    boundary = 5
  [../]
  [./top_react_y]
    type = NodalSum
    variable = saved_y
    boundary = 5
  [../]
  [./ref_resid_x]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_x
  [../]
  [./ref_resid_y]
    type = NodalL2Norm
    execute_on = timestep_end
    variable = saved_y
  [../]
  [./sigma_yy]
    type = ElementAverageValue
    variable = stress_yy
  [../]
  [./sigma_zz]
    type = ElementAverageValue
    variable = stress_zz
  [../]
  [./disp_x16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_x
  [../]
  [./disp_x9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_x
  [../]
  [./disp_y16]
    type = NodalVariableValue
    nodeid = 15
    variable = disp_y
  [../]
  [./disp_y9]
    type = NodalVariableValue
    nodeid = 8
    variable = disp_y
  [../]
  [./_dt]
    type = TimestepSize
  [../]
  [./num_lin_it]
    type = NumLinearIterations
  [../]
  [./num_nonlin_it]
    type = NumNonlinearIterations
  [../]
[]

[BCs]
  [./bot_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./top_press]
    type = Pressure
    variable = disp_y
    boundary = 5
    component = 1
    factor = 109.89
  [../]
[]

[Materials]
  [./bot]
    type = Elastic
    block = 1
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./top]
    type = Elastic
    block = 2
    disp_z = disp_y
    disp_r = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient

  #Preconditioned JFNK (default)
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  nl_abs_tol = 1e-10
  nl_rel_tol = 1e-9
  l_max_its = 50
  nl_max_its = 100
  dt = 1.0
  end_time = 1.0
  num_steps = 10
  dtmin = 1.0
  l_tol = 1e-5

[]

[VectorPostprocessors]
  [./x_disp]
    type = NodalValueSampler
    variable = disp_x
    boundary = '1 3 4 5'
    sort_by = x
  [../]
  [./cont_press]
    type = NodalValueSampler
    variable = contact_pressure
    boundary = '3'
    sort_by = x
  [../]
[]

[Outputs]
  print_linear_residuals = true
  perf_graph = true
  [./exodus]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
  [./chkfile]
    type = CSV
    show = 'bot_react_x bot_react_y disp_x9 disp_y9 disp_x16 disp_y16 sigma_yy sigma_zz top_react_x top_react_y x_disp cont_press'
    execute_vector_postprocessors_on = timestep_end
  [../]
  [./outfile]
    type = CSV
    delimiter = ' '
    execute_vector_postprocessors_on = none
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 4
    system = constraint
    normalize_penalty = true
    tangential_tolerance = 1e-3
    penalty = 1e+9
  [../]
[]

modules/combined/test/tests/elastic_patch/elastic_patch_plane_strain_large_strain_sm.i

# Deprecated: large_strain = true only introduces high order terms in the strain calculation
# but no rotation has been considered in solid mechanics. No such corresponding strain calculator
# in tensor mechanics
#
#
# This problem is adapted from the Abaqus verification manual:
#   "1.5.1 Membrane patch test"
#
# For large strain,
#   e_xx = e_yy = 1e-3 + 0.5*((1e-3)^2+0.25*(1e-3)^2) = 0.001000625
#   e_xy = 0.5*(1e-3 + (1e-3)^2)                      = 0.0005005
#
# If you multiply these strains through the elasticity tensor,
#   you will obtain the following stresses:
#   xx = yy = 1601.0
#   zz      =  800.5
#   xy      =  400.4
#   yz = zx =    0
#

[GlobalParams]
  displacements = 'disp_x disp_y'
[]

[Mesh]
  file = elastic_patch_rz.e
[]

[Functions]
  [./ux]
    type = ParsedFunction
    value = '1e-3*(x+0.5*y)'
  [../]
  [./uy]
    type = ParsedFunction
    value = '1e-3*(y+0.5*x)'
  [../]
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]

  [./temp]
    initial_condition = 117.56
  [../]
[]

[AuxVariables]
  [./stress_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_xy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_yz]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./stress_zx]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[Kernels]
  [./heat]
    type = HeatConduction
    variable = temp
  [../]
[]

[AuxKernels]
  [./stress_xx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xx
    index = 0
  [../]
  [./stress_yy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yy
    index = 1
  [../]
  [./stress_zz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zz
    index = 2
  [../]
  [./stress_xy]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_xy
    index = 3
  [../]
  [./stress_yz]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_yz
    index = 4
  [../]
  [./stress_zx]
    type = MaterialTensorAux
    tensor = stress
    variable = stress_zx
    index = 5
  [../]
[]

[BCs]
  [./ur]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 10
    function = ux
  [../]
  [./uz]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 10
    function = uy
  [../]

  [./temp]
    type = DirichletBC
    variable = temp
    boundary = 10
    value = 117.56
  [../]
[]

[Materials]
  [./stiffStuff1]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y

    youngs_modulus = 1e6
    poissons_ratio = 0.25

    temp = temp

    formulation = planestrain

    large_strain = true
  [../]

  [./heat]
    type = HeatConductionMaterial
    block = 1

    specific_heat = 0.116
    thermal_conductivity = 4.85e-4
  [../]

  [./density]
    type = Density
    block = 1
    density = 0.283
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  start_time = 0.0
  end_time = 1.0
[]

[Outputs]
  file_base = elastic_patch_plane_strain_large_strain_out
  exodus = true
[]

modules/tensor_mechanics/test/tests/truss/truss_2d.i

#
# Truss in two dimensional space
#
# The truss is made of five equilateral triangles supported at each end.
# The truss starts at (0,0).  At (1,0), there is a point load of 25.
# The reactions are therefore
#  Ryleft  = 2/3 * 25 = 16.7
#  Ryright = 1/3 * 25 = 8.33
# The area of each member is 0.8.
# Statics gives the stress in each member.  For example, for element 6 (from
#   (0,0) to (1/2,sqrt(3)/2)), the force is
#   f = 2/3 * 25 * 2/sqrt(3) = 100/3/sqrt(3) (compressive)
#   and the stress is
#   s = -100/3/sqrt(3)/0.8 = -24.06
#

[Mesh]
  type = FileMesh
  file = truss_2d.e
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./disp_y]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[AuxVariables]
  [./axial_stress]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./e_over_l]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./area]
    order = CONSTANT
    family = MONOMIAL
#    initial_condition = 1.0
  [../]
  [./react_x]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_y]
    order = FIRST
    family = LAGRANGE
  [../]
  [./react_z]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[Functions]
  [./x2]
    type = PiecewiseLinear
    x = '0  1 2 3'
    y = '0 .5 1 1'
  [../]
  [./y2]
    type = PiecewiseLinear
    x = '0 1  2 3'
    y = '0 0 .5 1'
  [../]
[]

[BCs]
  [./fixx1]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0
  [../]
  [./fixy1]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0
  [../]

  [./fixy4]
    type = DirichletBC
    variable = disp_y
    boundary = 4
    value = 0
  [../]
[]

[DiracKernels]
  [./pull]
    type = ConstantPointSource
    value = -25
    point = '1 0 0'
    variable = disp_y
  [../]
[]

[AuxKernels]
  [./axial_stress]
    type = MaterialRealAux
    block = 1
    property = axial_stress
    variable = axial_stress
  [../]
  [./e_over_l]
    type = MaterialRealAux
    block = 1
    property = e_over_l
    variable = e_over_l
  [../]
  [./area]
    type = ConstantAux
    block = 1
    variable = area
    value = 0.8
    execute_on = 'initial timestep_begin'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient

  solve_type = PJFNK

  petsc_options_iname = '-pc_type -ksp_gmres_restart'
  petsc_options_value = 'jacobi   101'

  nl_max_its = 15
  nl_rel_tol = 1e-8
  nl_abs_tol = 1e-10

  dt = 1
  num_steps = 1
  end_time = 1
[]

[Kernels]
  [./solid_x]
    type = StressDivergenceTensorsTruss
    block = 1
    displacements = 'disp_x disp_y'
    component = 0
    variable = disp_x
    area = area
    save_in = react_x
  [../]
  [./solid_y]
    type = StressDivergenceTensorsTruss
    block = 1
    displacements = 'disp_x disp_y'
    component = 1
    variable = disp_y
    area = area
    save_in = react_y
  [../]
[]

[Materials]
  [./linelast]
    type = LinearElasticTruss
    block = 1
    youngs_modulus = 1e6
    displacements = 'disp_x disp_y'
  [../]
[]

[Outputs]
  exodus = true
[]

modules/phase_field/test/tests/MultiSmoothCircleIC/multismoothcircleIC_normal_test.i

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 15
  ny = 15
  nz = 15
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 100
  zmin = 0
  zmax = 100
  elem_type = HEX8
[]

[Variables]
  [./c]
    order = FIRST
    family = LAGRANGE
  [../]
[]

[ICs]
  [./c]
    type = MultiSmoothCircleIC
    variable = c
    invalue = 1.0
    outvalue = 0.0001
    bubspac = 30.0 # This spacing is from bubble center to bubble center
    numbub = 10
    radius = 10.0
    int_width = 12.0
    rand_seed = 2000
    radius_variation = 2 #This is the standard deviation
    radius_variation_type = normal
  [../]
[]

[Kernels]
  [./ie_c]
    type = TimeDerivative
    variable = c
  [../]
  [./diff]
    type = MatDiffusion
    variable = c
    diffusivity = D_v
  [../]
[]

[BCs]
  [./Periodic]
    [./all]
      auto_direction = 'x y z'
    [../]
  [../]
[]

[Materials]
  [./Dv]
    type = GenericConstantMaterial
    prop_names = D_v
    prop_values = 0.074802
  [../]
[]

[Postprocessors]
  [./bubbles]
    type = FeatureFloodCount
    variable = c
    execute_on = 'initial timestep_end'
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart -mat_mffd_type'
  petsc_options_value = 'hypre boomeramg 101 ds'
  l_max_its = 20
  l_tol = 1e-4
  nl_max_its = 20
  nl_rel_tol = 1e-9
  nl_abs_tol = 1e-11
  start_time = 0.0
  num_steps = 1
  dt = 100.0
[]

[Outputs]
  exodus = true
[]

modules/solid_mechanics/test/tests/check_error/youngs_modulus_sm.i

[Mesh]
  file = cube.e
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z
  [../]
[]

[BCs]
  [./2_x]
    type = DirichletBC
    variable = disp_x
    boundary = 2
    value = 0.0
  [../]
  [./2_y]
    type = DirichletBC
    variable = disp_y
    boundary = 2
    value = 0.0
  [../]
  [./2_z]
    type = DirichletBC
    variable = disp_z
    boundary = 2
    value = 0.0
  [../]
[]

[Materials]
  [./goo]
    type = Elastic
    block = 1

    disp_x = disp_x
    disp_y = disp_y
    disp_z = disp_z

    youngs_modulus = -1e6
    poissons_ratio = 0.0
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  nl_abs_tol = 1e-10

  l_max_its = 20

  start_time = 0.0
  dt = 1.0
  num_steps = 2
  end_time = 2.0
[]

[Outputs]
  file_base = out
  exodus = true
[]

modules/combined/test/tests/sliding_block/sliding/constraint/sm/frictionless_penalty_sm.i

#  This is a benchmark test that checks constraint based frictionless
#  contact using the penalty method.  In this test a constant
#  displacement is applied in the horizontal direction to simulate
#  a small block come sliding down a larger block.
#
#  The gold file is run on one processor
#  and the benchmark case is run on a minimum of 4 processors to ensure no
#  parallel variability in the contact pressure and penetration results.
#

[Mesh]
  file = sliding_elastic_blocks_2d.e
  patch_size = 80
[]

[GlobalParams]
  volumetric_locking_correction = false
  displacements = 'disp_x disp_y'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
[]

[AuxVariables]
  [./penetration]
  [../]
  [./inc_slip_x]
  [../]
  [./inc_slip_y]
  [../]
  [./accum_slip_x]
  [../]
  [./accum_slip_y]
  [../]
[]

[Functions]
  [./vertical_movement]
    type = ParsedFunction
    value = -t
  [../]
[]

[SolidMechanics]
  [./solid]
    disp_x = disp_x
    disp_y = disp_y
  [../]
[]

[AuxKernels]
  [./zeroslip_x]
    type = ConstantAux
    variable = inc_slip_x
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./zeroslip_y]
    type = ConstantAux
    variable = inc_slip_y
    boundary = 3
    execute_on = timestep_begin
    value = 0.0
  [../]
  [./accum_slip_x]
    type = AccumulateAux
    variable = accum_slip_x
    accumulate_from_variable = inc_slip_x
    execute_on = timestep_end
  [../]
  [./accum_slip_y]
    type = AccumulateAux
    variable = accum_slip_y
    accumulate_from_variable = inc_slip_y
    execute_on = timestep_end
  [../]
  [./penetration]
    type = PenetrationAux
    variable = penetration
    boundary = 3
    paired_boundary = 2
  [../]
[]

[Postprocessors]
  [./nonlinear_its]
    type = NumNonlinearIterations
    execute_on = timestep_end
  [../]
  [./penetration]
    type = NodalVariableValue
    variable = penetration
    nodeid = 222
  [../]
  [./contact_pressure]
    type = NodalVariableValue
    variable = contact_pressure
    nodeid = 222
  [../]
[]

[BCs]
  [./left_x]
    type = DirichletBC
    variable = disp_x
    boundary = 1
    value = 0.0
  [../]
  [./left_y]
    type = DirichletBC
    variable = disp_y
    boundary = 1
    value = 0.0
  [../]
  [./right_x]
    type = DirichletBC
    variable = disp_x
    boundary = 4
    value = -0.02
  [../]
  [./right_y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 4
    function = vertical_movement
  [../]
[]

[Materials]
  [./left]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 1
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
  [./right]
    type = Elastic
    formulation = NonlinearPlaneStrain
    block = 2
    disp_y = disp_y
    disp_x = disp_x
    poissons_ratio = 0.3
    youngs_modulus = 1e6
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options = '-snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu     superlu_dist'

  line_search = 'none'

  l_max_its = 100
  nl_max_its = 1000
  dt = 0.1
  end_time = 15
  num_steps = 1000
  l_tol = 1e-6
  nl_rel_tol = 1e-10
  nl_abs_tol = 1e-6
  dtmin = 0.01

  [./Predictor]
    type = SimplePredictor
    scale = 1.0
  [../]
[]

[Outputs]
  interval = 10
  [./out]
    type = Exodus
    elemental_as_nodal = true
  [../]
  [./console]
    type = Console
    max_rows = 5
  [../]
[]

[Contact]
  [./leftright]
    slave = 3
    master = 2
    model = frictionless
    penalty = 1e+7
    formulation = penalty
    system = constraint
    normal_smoothing_distance = 0.1
  [../]
[]

modules/tensor_mechanics/test/tests/thermal_expansion/multiple_thermal_eigenstrains.i

# The primary purpose of this test is to verify that the ability to combine
# multiple eigenstrains works correctly.  It should behave identically to the
# constant_expansion_coeff.i model in this directory. Instead of applying the
# thermal expansion in one eigenstrain, it splits that into two eigenstrains
# that get added together.

# This test involves only thermal expansion strains on a 2x2x2 cube of approximate
# steel material.  An initial temperature of 25 degrees C is given for the material,
# and an auxkernel is used to calculate the temperature in the entire cube to
# raise the temperature each time step.  After the first timestep,in which the
# temperature jumps, the temperature increases by 6.25C each timestep.
# The thermal strain increment should therefore be
#     6.25 C * 1.3e-5 1/C = 8.125e-5 m/m.

[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 2
  ny = 2
  nz = 2
[]

[GlobalParams]
  displacements = 'disp_x disp_y disp_z'
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./temp]
  [../]

  [./strain_yy]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_xx]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./strain_zz]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[Functions]
  [./temperature_load]
    type = ParsedFunction
    value = t*(500.0)+300.0
  [../]
[]

[Kernels]
  [./TensorMechanics]
    use_displaced_mesh = true
  [../]
[]

[AuxKernels]
  [./tempfuncaux]
    type = FunctionAux
    variable = temp
    function = temperature_load
    use_displaced_mesh = false
  [../]

  [./strain_xx]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_xx
    index_i = 0
    index_j = 0
  [../]
  [./strain_yy]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_yy
    index_i = 1
    index_j = 1
  [../]
  [./strain_zz]
    type = RankTwoAux
    rank_two_tensor = total_strain
    variable = strain_zz
    index_i = 2
    index_j = 2
  [../]
[]

[BCs]
  [./x_bot]
    type = DirichletBC
    variable = disp_x
    boundary = left
    value = 0.0
  [../]
  [./y_bot]
    type = DirichletBC
    variable = disp_y
    boundary = bottom
    value = 0.0
  [../]
  [./z_bot]
    type = DirichletBC
    variable = disp_z
    boundary = back
    value = 0.0
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    youngs_modulus = 2.1e5
    poissons_ratio = 0.3
  [../]
  [./small_strain]
    type = ComputeIncrementalSmallStrain
    eigenstrain_names = 'eigenstrain1 eigenstrain2'
  [../]
  [./small_stress]
    type = ComputeFiniteStrainElasticStress
  [../]
  [./thermal_expansion_strain1]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 298
    thermal_expansion_coeff = 1.0e-5
    temperature = temp
    eigenstrain_name = eigenstrain1
  [../]
  [./thermal_expansion_strain2]
    type = ComputeThermalExpansionEigenstrain
    stress_free_temperature = 298
    thermal_expansion_coeff = 0.3e-5
    temperature = temp
    eigenstrain_name = eigenstrain2
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  l_max_its = 50
  nl_max_its = 50
  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-10
  l_tol = 1e-9

  start_time = 0.0
  end_time = 0.075
  dt = 0.0125
  dtmin = 0.0001
[]

[Outputs]
  csv = true
  exodus = true
  checkpoint = true
[]

[Postprocessors]
  [./strain_xx]
    type = ElementAverageValue
    variable = strain_xx
    block = 0
  [../]
  [./strain_yy]
    type = ElementAverageValue
    variable = strain_yy
    block = 0
  [../]
  [./strain_zz]
    type = ElementAverageValue
    variable = strain_zz
    block = 0
  [../]
  [./temperature]
    type = AverageNodalVariableValue
    variable = temp
    block = 0
  [../]
[]

modules/heat_conduction/test/tests/gray_lambert_radiator/gray_lambert_cavity_automatic_vf.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  xmin = 0
  xmax = 1
  ymin = 0
  ymax = 2
  nx = 20
  ny = 20
[]

[Problem]
  kernel_coverage_check = false
[]

[Variables]
  [./temperature]
    initial_condition = 300
  [../]
[]

[UserObjects]
  [./gray_lambert]
    type = ViewFactorObjectSurfaceRadiation
    boundary = 'bottom top left right'
    fixed_temperature_boundary = 'bottom top'
    fixed_boundary_temperatures = '550 300'
    adiabatic_boundary = 'right left'
    emissivity = '1 0.75 0.75 0.75'
    temperature = temperature
    view_factor_object_name = view_factor
  [../]

  [./view_factor]
    type = UnobstructedPlanarViewFactor
    boundary = 'left right bottom top'
    normalize_view_factor = true
    execute_on = 'INITIAL'
  [../]
[]

[Postprocessors]
  [./heat_flux_density_bottom]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = HEAT_FLUX_DENSITY
    boundary = bottom
  [../]

  [./temperature_left]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = TEMPERATURE
    boundary = left
  [../]

  [./temperature_right]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = TEMPERATURE
    boundary = right
  [../]

  [./brightness_top]
    type = GrayLambertSurfaceRadiationPP
    surface_radiation_object_name = gray_lambert
    return_type = RADIOSITY
    boundary = top
  [../]
[]

[Executioner]
  type = Transient
  num_steps = 1
[]

[Outputs]
  csv = true
[]

modules/combined/test/tests/gap_heat_transfer_htonly/cyl2D.i

#
# 2D Cylindrical Gap Heat Transfer Test.
#
# This test exercises 2D gap heat transfer for a constant conductivity gap.
#
# The mesh consists of an inner solid cylinder of radius = 1 unit, and outer
# hollow cylinder with an inner radius of 2 in the x-y plane. In other words,
# the gap between them is 1 radial unit in length.
#
# The conductivity of both cylinders is set very large to achieve a uniform
# temperature in each cylinder. The temperature of the center node of the
# inner cylinder is ramped from 100 to 200 over one time unit. The temperature
# of the outside of the outer, hollow cylinder is held fixed at 100.
#
# A simple analytical solution is possible for the integrated heat flux
# between the inner and outer cylinders:
#
#  Integrated Flux = (T_left - T_right) * (gapK/(r*ln(r2/r1))) * Area
#
# For gapK = 1 (default value)
#
# The area is taken as the area of the slave (inner) surface:
#
# Area = 2 * pi * h * r, where h is the height of the cylinder.
#
# The integrated heat flux across the gap at time 1 is then:
#
# 2*pi*h*k*delta_T/(ln(r2/r1))
# 2*pi*1*1*100/(ln(2/1)) = 906.5 watts
#
# For comparison, see results from the integrated flux post processors.
# This simulation makes use of symmetry, so only 1/4 of the cylinders is meshed
# As such, the integrated flux from the post processors is 1/4 of the total,
# or 226.6 watts.
# The value coming from the post processor is slightly less than this
# but converges as mesh refinement increases.
# Note that the 2D and 3D results are the same.
#
# Simulating contact is challenging. Regression tests that exercise
# contact features can be difficult to solve consistently across multiple
# platforms. While designing these tests, we felt it worth while to note
# some aspects of these tests. The following applies to:
# sphere3D.i, sphere2DRZ.i, cyl2D.i, and cyl3D.i.
# 1. We decided that to perform consistently across multiple platforms we
# would use very small convergence tolerance. In this test we chose an
# nl_rel_tol of 1e-12.
# 2. Due to such a high value for thermal conductivity (used here so that the
# domains come to a uniform temperature) the integrated flux at time = 0
# was relatively large (the value coming from SideIntegralFlux =
#  -_diffusion_coef[_qp]*_grad_u[_qp]*_normals[_qp] where the diffusion coefficient
# here is thermal conductivity).
# Even though _grad_u[_qp] is small, in this case the diffusion coefficient
# is large. The result is a number that isn't exactly zero and tends to
# fail exodiff. For this reason the parameter execute_on = initial should not
# be used. That parameter is left to default settings in these regression tests.
#
[GlobalParams]
  order = SECOND
  family = LAGRANGE
[]


[Mesh]
  file = cyl2D.e
[]

[Functions]
  [./temp]
    type = PiecewiseLinear
    x = '0   1'
    y = '100 200'
  [../]
[]


[Variables]
  [./temp]
   initial_condition = 100
  [../]
[]

[AuxVariables]
  [./gap_conductance]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]


[Kernels]
  [./heat_conduction]
    type = HeatConduction
    variable = temp
  [../]
[]


[AuxKernels]
  [./gap_cond]
    type = MaterialRealAux
    property = gap_conductance
    variable = gap_conductance
    boundary = 2
  [../]
[]

[Materials]
  [./heat1]
    type = HeatConductionMaterial
    block = '1 2'
    specific_heat = 1.0
    thermal_conductivity = 1000000.0
  [../]
[]

[ThermalContact]
  [./thermal_contact]
    type = GapHeatTransfer
    variable = temp
    master = 3
    slave = 2
    gap_conductivity = 1
    quadrature = true
    gap_geometry_type = CYLINDER
    cylinder_axis_point_1 = '0 0 0'
    cylinder_axis_point_2 = '0 0 1'
  [../]
[]

[BCs]
  [./mid]
    type = FunctionDirichletBC
    boundary = 1
    variable = temp
    function = temp
  [../]
  [./temp_far_right]
    type = DirichletBC
    boundary = 4
    variable = temp
    value = 100
  [../]
[]

[Executioner]
  type = Transient
  solve_type = 'PJFNK'

  petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
  petsc_options_value = 'lu       superlu_dist'

  dt = 1
  dtmin = 0.01
  end_time = 1

  nl_rel_tol = 1e-12
  nl_abs_tol = 1e-7

  [./Quadrature]
     order = fifth
     side_order = seventh
  [../]
[]

[Outputs]
  exodus = true
  [./Console]
    type = Console
  [../]
[]

[Postprocessors]
  [./temp_left]
    type = SideAverageValue
    boundary = 2
    variable = temp
  [../]

  [./temp_right]
    type = SideAverageValue
    boundary = 3
    variable = temp
  [../]

  [./flux_left]
    type = SideFluxIntegral
    variable = temp
    boundary = 2
    diffusivity = thermal_conductivity
  [../]

  [./flux_right]
    type = SideFluxIntegral
    variable = temp
    boundary = 3
    diffusivity = thermal_conductivity
  [../]
[]

modules/phase_field/examples/anisotropic_interfaces/GrandPotentialPlanarGrowth.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  xmin = -2
  xmax = 2
  ymin = -2
  ymax = 2
  uniform_refine = 2
[]

[GlobalParams]
  x1 = -2
  y1 = -2
  x2 = 2
  y2 = -1.5
  derivative_order = 2
[]

[Variables]
  [./w]
  [../]
  [./etaa0]
  [../]
  [./etab0]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
  #Temperature
  [./T]
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    v = 'etaa0 etab0'
  [../]
  [./T]
    type = FunctionAux
    function = 95.0+2.0*(y-1.0*t)
    variable = T
    execute_on = 'initial timestep_begin'
  [../]
[]

[ICs]
  [./w]
    type = BoundingBoxIC
    variable = w
    # note w = A*(c-cleq), A = 1.0, cleq = 0.0 ,i.e., w = c (in the matrix/liquid phase)
    outside = -4.0
    inside = 0.0
  [../]
  [./etaa0]
    type = BoundingBoxIC
    variable = etaa0
    #Solid phase
    outside = 0.0
    inside = 1.0
  [../]
  [./etab0]
    type = BoundingBoxIC
    variable = etab0
    #Liquid phase
    outside = 1.0
    inside = 0.0
  [../]
[]


[Kernels]
# Order parameter eta_alpha0
  [./ACa0_bulk]
    type = ACGrGrMulti
    variable = etaa0
    v =           'etab0'
    gamma_names = 'gab'
  [../]
  [./ACa0_sw]
    type = ACSwitching
    variable = etaa0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etab0 w'
  [../]
  [./ACa0_int1]
    type = ACInterface2DMultiPhase1
    variable = etaa0
    etas = 'etab0'
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
    d2kappadgrad_etaa_name = d2kappadgrad_etaa
  [../]
  [./ACa0_int2]
    type = ACInterface2DMultiPhase2
    variable = etaa0
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
  [../]
  [./ea0_dot]
    type = TimeDerivative
    variable = etaa0
  [../]
# Order parameter eta_beta0
  [./ACb0_bulk]
    type = ACGrGrMulti
    variable = etab0
    v =           'etaa0'
    gamma_names = 'gab'
  [../]
  [./ACb0_sw]
    type = ACSwitching
    variable = etab0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etaa0 w'
  [../]
  [./ACb0_int1]
    type = ACInterface2DMultiPhase1
    variable = etab0
    etas = 'etaa0'
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
    d2kappadgrad_etaa_name = d2kappadgrad_etab
  [../]
  [./ACb0_int2]
    type = ACInterface2DMultiPhase2
    variable = etab0
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
  [../]
  [./eb0_dot]
    type = TimeDerivative
    variable = etab0
  [../]
#Chemical potential
  [./w_dot]
    type = SusceptibilityTimeDerivative
    variable = w
    f_name = chi
  [../]
  [./Diffusion]
    type = MatDiffusion
    variable = w
    diffusivity = Dchi
  [../]
  [./coupled_etaa0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etaa0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0'
  [../]
  [./coupled_etab0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etab0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0'
  [../]
[]


[Materials]
  [./ha]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = ha
    all_etas = 'etaa0 etab0'
    phase_etas = 'etaa0'
  [../]
  [./hb]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = hb
    all_etas = 'etaa0 etab0'
    phase_etas = 'etab0'
  [../]
  [./omegaa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegaa
    material_property_names = 'Vm ka caeq'
    function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
  [../]
  [./omegab]
    type = DerivativeParsedMaterial
    args = 'w T'
    f_name = omegab
    material_property_names = 'Vm kb cbeq S Tm'
    function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq-S*(T-Tm)'
  [../]
  [./rhoa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhoa
    material_property_names = 'Vm ka caeq'
    function = 'w/Vm^2/ka + caeq/Vm'
  [../]
  [./rhob]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhob
    material_property_names = 'Vm kb cbeq'
    function = 'w/Vm^2/kb + cbeq/Vm'
  [../]
  [./kappaa]
    type = InterfaceOrientationMultiphaseMaterial
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
    d2kappadgrad_etaa_name = d2kappadgrad_etaa
    etaa = etaa0
    etab = etab0
    outputs = exodus
    output_properties = 'kappaa'
  [../]
  [./kappab]
    type = InterfaceOrientationMultiphaseMaterial
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
    d2kappadgrad_etaa_name = d2kappadgrad_etab
    etaa = etab0
    etab = etaa0
    outputs = exodus
    output_properties = 'kappab'
  [../]
  [./const]
    type = GenericConstantMaterial
    prop_names =  'L   D    chi  Vm   ka    caeq kb    cbeq  gab mu   S   Tm'
    prop_values = '1.0 1.0  0.1  1.0  10.0  0.1  10.0  0.9   4.5 10.0 1.0 100.0'
  [../]
  [./Mobility]
    type = ParsedMaterial
    f_name = Dchi
    material_property_names = 'D chi'
    function = 'D*chi'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type -ksp_gmres_restart'
  petsc_options_value = 'hypre    boomeramg      31'
  l_tol = 1.0e-3
  l_max_its = 30
  nl_max_its = 15
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1e-8
  end_time = 2.0
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.0005
    cutback_factor = 0.7
    growth_factor = 1.2
  [../]
[]

[Adaptivity]
 initial_steps = 3
 max_h_level = 3
 initial_marker = err_eta
 marker = err_bnds
[./Markers]
   [./err_eta]
     type = ErrorFractionMarker
     coarsen = 0.3
     refine = 0.95
     indicator = ind_eta
   [../]
   [./err_bnds]
     type = ErrorFractionMarker
     coarsen = 0.3
     refine = 0.95
     indicator = ind_bnds
   [../]
 [../]
 [./Indicators]
   [./ind_eta]
     type = GradientJumpIndicator
     variable = etaa0
    [../]
    [./ind_bnds]
      type = GradientJumpIndicator
      variable = bnds
   [../]
 [../]
[]

[Outputs]
  interval = 10
  exodus = true
[]

modules/stochastic_tools/test/tests/multiapps/batch_sampler_transient_multiapp/master_transient.i

[Mesh]
  type = GeneratedMesh
  dim = 1
[]

[Problem]
  kernel_coverage_check = false
  solve = false
[]

[Distributions]
  [uniform]
    type = UniformDistribution
    lower_bound = 2
    upper_bound = 4
  []
[]

[Samplers]
  [mc]
    type = MonteCarloSampler
    num_rows = 5
    distributions = 'uniform uniform'
    execute_on = 'INITIAL TIMESTEP_BEGIN'
  []
[]

[Executioner]
  type = Transient
  num_steps = 3
[]

[MultiApps]
  [runner]
    type = SamplerTransientMultiApp
    sampler = mc
    input_files = 'sub.i'
    execute_on = 'INITIAL TIMESTEP_BEGIN'
    mode = batch-restore
  []
[]

[Transfers]
  [runner]
    type = SamplerParameterTransfer
    multi_app = runner
    sampler = mc
    parameters = 'BCs/left/value BCs/right/value'
    to_control = 'stochastic'
  []
  [data]
    type = SamplerPostprocessorTransfer
    multi_app = runner
    sampler = mc
    to_vector_postprocessor = storage
    from_postprocessor = average
  []
[]

[VectorPostprocessors]
  [storage]
    type = StochasticResults
    samplers = mc
    execute_on = 'INITIAL TIMESTEP_END'
  []
[]

[Outputs]
  csv = true
[]

test/tests/functions/image_function/crop.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 10
  ny = 10
  uniform_refine = 2
  xmin = 0.5
  ymin = 0.5
[]

[Variables]
  [./u]
  [../]
[]

[Functions]
  [./image_func]
    type = ImageFunction
    file_base = stack/test
    file_range = '0' # file_range is a vector input, a single entry means "read only 1 file"
    file_suffix = png
    origin = '0 0 0'
    dimensions = '1 1 0'
  [../]
[]

[ICs]
  [./u_ic]
    type = FunctionIC
    function = image_func
    variable = u
  [../]
[]

[Problem]
  type = FEProblem
  solve = false
[]

[Executioner]
  type = Transient
  num_steps = 1
  dt = 0.1
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/flux_limited_TVD_advection/except_01.i

# Exception test that AdvectiveFluxCalculator is indeed executed on linear
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 1
[]

[Variables]
  [./u]
  [../]
[]

[Kernels]
  [./flux]
    type = FluxLimitedTVDAdvection
    variable = u
    advective_flux_calculator = fluo
  [../]
[]

[UserObjects]
  [./fluo]
    type = AdvectiveFluxCalculatorConstantVelocity
    execute_on = 'nonlinear timestep_begin timestep_end final initial'
    u = u
    velocity = '0 0 0'
  [../]
[]


[Preconditioning]
  active = smp
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 1
  num_steps = 1
  dt = 1
[]

test/tests/kernels/conservative_advection/no_upwinding_jacobian.i

# Test of advection with no upwinding
[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 3
  ny = 2
  nz = 1
[]

[Variables]
  [./u]
  [../]
[]

[ICs]
  [./u]
    type = RandomIC
    variable = u
  [../]
[]

[Kernels]
  [./advection]
    type = ConservativeAdvection
    variable = u
    velocity = '2 -1.1 1.23'
  [../]
[]

[Preconditioning]
  [./andy]
    type = SMP
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-snes_type'
  petsc_options_value = 'test'
  dt = 2
  end_time = 2
[]

modules/tensor_mechanics/test/tests/2D_different_planes/planestrain_jacobian_testing_xz.i

[GlobalParams]
  order = FIRST
  family = LAGRANGE
  displacements = 'disp_x disp_y disp_z'
[]

[Mesh]
  file = square_xz_plane.e
[]

[Variables]
  [./disp_x]
  [../]
  [./disp_z]
  [../]
[]

[AuxVariables]
  [./disp_y]
  [../]
[]

[Modules/TensorMechanics/Master]
  [./plane_strain]
    block = 1
    strain = SMALL
    out_of_plane_direction = y
    planar_formulation = PLANE_STRAIN
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeIsotropicElasticityTensor
    poissons_ratio = 0.0
    youngs_modulus = 1
  [../]
  [./stress]
    type = ComputeLinearElasticStress
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  solve_type = NEWTON
  petsc_options_iname = '-ksp_type -pc_type -snes_type'
  petsc_options_value = 'bcgs bjacobi test'

  end_time = 1.0
[]

modules/phase_field/test/tests/GrandPotentialPFM/GrandPotentialAnisotropyAntitrap.i

[Mesh]
  type = GeneratedMesh
  dim = 2
  nx = 15
  ny = 15
  xmin = -2
  xmax = 2
  ymin = -2
  ymax = 2
[]

[GlobalParams]
  radius = 1.0
  int_width = 0.8
  x1 = 0
  y1 = 0
  enable_jit = true
  derivative_order = 2
[]

[Variables]
  [./w]
  [../]
  [./etaa0]
  [../]
  [./etab0]
  [../]
[]

[AuxVariables]
  [./bnds]
  [../]
[]

[AuxKernels]
  [./bnds]
    type = BndsCalcAux
    variable = bnds
    v = 'etaa0 etab0'
  [../]
[]

[ICs]
  [./w]
    type = SmoothCircleIC
    variable = w
    outvalue = -4.0
    invalue = 0.0
  [../]
  [./etaa0]
    type = SmoothCircleIC
    variable = etaa0
    #Solid phase
    outvalue = 0.0
    invalue = 1.0
  [../]
  [./etab0]
    type = SmoothCircleIC
    variable = etab0
    #Liquid phase
    outvalue = 1.0
    invalue = 0.0
  [../]
[]

[Kernels]
# Order parameter eta_alpha0
  [./ACa0_bulk]
    type = ACGrGrMulti
    variable = etaa0
    v =           'etab0'
    gamma_names = 'gab'
  [../]
  [./ACa0_sw]
    type = ACSwitching
    variable = etaa0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etab0 w'
  [../]
  [./ACa0_int1]
    type = ACInterface2DMultiPhase1
    variable = etaa0
    etas = 'etab0'
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
    d2kappadgrad_etaa_name = d2kappadgrad_etaa
  [../]
  [./ACa0_int2]
    type = ACInterface2DMultiPhase2
    variable = etaa0
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
  [../]
  [./ea0_dot]
    type = TimeDerivative
    variable = etaa0
  [../]
# Order parameter eta_beta0
  [./ACb0_bulk]
    type = ACGrGrMulti
    variable = etab0
    v =           'etaa0'
    gamma_names = 'gab'
  [../]
  [./ACb0_sw]
    type = ACSwitching
    variable = etab0
    Fj_names  = 'omegaa omegab'
    hj_names  = 'ha     hb'
    args = 'etaa0 w'
  [../]
  [./ACb0_int1]
    type = ACInterface2DMultiPhase1
    variable = etab0
    etas = 'etaa0'
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
    d2kappadgrad_etaa_name = d2kappadgrad_etab
  [../]
  [./ACb0_int2]
    type = ACInterface2DMultiPhase2
    variable = etab0
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
  [../]
  [./eb0_dot]
    type = TimeDerivative
    variable = etab0
  [../]
#Chemical potential
  [./w_dot]
    type = SusceptibilityTimeDerivative
    variable = w
    f_name = chi
    args = '' # in this case chi (the susceptibility) is simply a constant
  [../]
  [./Diffusion]
    type = MatDiffusion
    variable = w
    diffusivity = Dchi
    args = ''
  [../]
  [./coupled_etaa0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etaa0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0'
  [../]
  [./coupled_etab0dot]
    type = CoupledSwitchingTimeDerivative
    variable = w
    v = etab0
    Fj_names = 'rhoa rhob'
    hj_names = 'ha   hb'
    args = 'etaa0 etab0'
  [../]
  [./coupled_etaa0dot_int]
    type = AntitrappingCurrent
    variable = w
    v = etaa0
    f_name = rhodiff
  [../]
  [./coupled_etab0dot_int]
    type = AntitrappingCurrent
    variable = w
    v = etab0
    f_name = rhodiff
  [../]
[]

[Materials]
  [./ha]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = ha
    all_etas = 'etaa0 etab0'
    phase_etas = 'etaa0'
  [../]
  [./hb]
    type = SwitchingFunctionMultiPhaseMaterial
    h_name = hb
    all_etas = 'etaa0 etab0'
    phase_etas = 'etab0'
  [../]
  [./omegaa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegaa
    material_property_names = 'Vm ka caeq'
    function = '-0.5*w^2/Vm^2/ka-w/Vm*caeq'
  [../]
  [./omegab]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = omegab
    material_property_names = 'Vm kb cbeq'
    function = '-0.5*w^2/Vm^2/kb-w/Vm*cbeq'
  [../]
  [./rhoa]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhoa
    material_property_names = 'Vm ka caeq'
    function = 'w/Vm^2/ka + caeq/Vm'
  [../]
  [./rhob]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhob
    material_property_names = 'Vm kb cbeq'
    function = 'w/Vm^2/kb + cbeq/Vm'
  [../]
  [./int]
    type = DerivativeParsedMaterial
    args = 'w'
    f_name = rhodiff
    material_property_names = 'rhoa rhob'
    constant_names = 'int_width'
    constant_expressions = '0.8'
    function = 'int_width*(rhob-rhoa)'
  [../]
  [./kappaa]
    type = InterfaceOrientationMultiphaseMaterial
    kappa_name = kappaa
    dkappadgrad_etaa_name = dkappadgrad_etaa
    d2kappadgrad_etaa_name = d2kappadgrad_etaa
    etaa = etaa0
    etab = etab0
  [../]
  [./kappab]
    type = InterfaceOrientationMultiphaseMaterial
    kappa_name = kappab
    dkappadgrad_etaa_name = dkappadgrad_etab
    d2kappadgrad_etaa_name = d2kappadgrad_etab
    etaa = etab0
    etab = etaa0
  [../]
  [./const]
    type = GenericConstantMaterial
    prop_names =  'L   D    chi  Vm   ka    caeq kb    cbeq  gab mu'
    prop_values = '1.0 1.0  0.1  1.0  10.0  0.1  10.0  0.9   4.5 10.0'
  [../]
  [./Mobility]
    type = ParsedMaterial
    f_name = Dchi
    material_property_names = 'D chi'
    function = 'D*chi'
  [../]
[]

[Preconditioning]
  [./SMP]
    type = SMP
    full = true
  [../]
[]

[Executioner]
  type = Transient
  scheme = bdf2
  petsc_options_iname = '-pc_type -ksp_gmres_restart -sub_pc_type -pc_asm_overlap'
  petsc_options_value = 'asm      31                  lu           1'
  l_tol = 1.0e-3
  nl_rel_tol = 1.0e-8
  nl_abs_tol = 1e-8
  num_steps = 3
  [./TimeStepper]
    type = IterationAdaptiveDT
    dt = 0.001
  [../]
[]

[Outputs]
  exodus = true
[]

modules/porous_flow/test/tests/numerical_diffusion/pffltvd_action.i

# Using flux-limited TVD advection ala Kuzmin and Turek, employing PorousFlow Kernels and UserObjects, with superbee flux-limiter
# Using the PorousFlowFullySaturated Action
[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 100
  xmin = 0
  xmax = 1
[]

[GlobalParams]
  PorousFlowDictator = dictator
  gravity = '0 0 0'
[]

[Variables]
  [./porepressure]
  [../]
  [./tracer]
  [../]
[]

[ICs]
  [./porepressure]
    type = FunctionIC
    variable = porepressure
    function = '1 - x'
  [../]
  [./tracer]
    type = FunctionIC
    variable = tracer
    function = 'if(x<0.1,0,if(x>0.3,0,1))'
  [../]
[]

[PorousFlowFullySaturated]
  porepressure = porepressure
  coupling_type = Hydro
  fp = the_simple_fluid
  mass_fraction_vars = tracer
  stabilization = KT
  flux_limiter_type = superbee
[]

[BCs]
  [./constant_injection_porepressure]
    type = DirichletBC
    variable = porepressure
    value = 1
    boundary = left
  [../]
  [./no_tracer_on_left]
    type = DirichletBC
    variable = tracer
    value = 0
    boundary = left
  [../]
  [./remove_component_1]
    type = PorousFlowPiecewiseLinearSink
    variable = porepressure
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 1
    use_mobility = true
    flux_function = 1E3
  [../]
  [./remove_component_0]
    type = PorousFlowPiecewiseLinearSink
    variable = tracer
    boundary = right
    fluid_phase = 0
    pt_vals = '0 1E3'
    multipliers = '0 1E3'
    mass_fraction_component = 0
    use_mobility = true
    flux_function = 1E3
  [../]
[]

[Modules]
  [./FluidProperties]
    [./the_simple_fluid]
      type = SimpleFluidProperties
      bulk_modulus = 2E9
      thermal_expansion = 0
      viscosity = 1.0
      density0 = 1000.0
    [../]
  [../]
[]

[Materials]
  [./porosity]
    type = PorousFlowPorosity
    porosity_zero = 0.1
  [../]
  [./permeability]
    type = PorousFlowPermeabilityConst
    permeability = '1E-2 0 0   0 1E-2 0   0 0 1E-2'
  [../]
[]

[Preconditioning]
  active = basic
  [./basic]
    type = SMP
    full = true
    petsc_options = '-ksp_diagonal_scale -ksp_diagonal_scale_fix'
    petsc_options_iname = '-pc_type -sub_pc_type -sub_pc_factor_shift_type -pc_asm_overlap'
    petsc_options_value = ' asm      lu           NONZERO                   2'
  [../]
  [./preferred_but_might_not_be_installed]
    type = SMP
    full = true
    petsc_options_iname = '-pc_type -pc_factor_mat_solver_package'
    petsc_options_value = ' lu       mumps'
  [../]
[]

[VectorPostprocessors]
  [./tracer]
    type = LineValueSampler
    start_point = '0 0 0'
    end_point = '1 0 0'
    num_points = 101
    sort_by = x
    variable = tracer
  [../]
[]

[Executioner]
  type = Transient
  solve_type = Newton
  end_time = 6
  dt = 6E-2
  nl_abs_tol = 1E-8
  timestep_tolerance = 1E-3
[]

[Outputs]
  file_base = pffltvd_out
  [./out]
    type = CSV
    execute_on = final
  [../]
[]

modules/contact/test/tests/bouncing-block-contact/frictional-mortar-min-lm-mortar-disp.i

starting_point = 2e-1

# We offset slightly so we avoid the case where the bottom of the slave block and the top of the
# master block are perfectly vertically aligned which can cause the backtracking line search some
# issues for a coarse mesh (basic line search handles that fine)
offset = 1e-2

[GlobalParams]
  displacements = 'disp_x disp_y'
  diffusivity = 1e0
  scaling = 1e0
[]

[Mesh]
  file = long-bottom-block-1elem-blocks.e
[]

[Variables]
  [./disp_x]
    block = '1 2'
    # order = SECOND
  [../]
  [./disp_y]
    block = '1 2'
    # order = SECOND
  [../]
  [./normal_lm]
    block = 3
    family = MONOMIAL
    order = CONSTANT
  [../]
  [./tangential_lm]
    block = 3
    family = MONOMIAL
    order = CONSTANT
  [../]
[]

[ICs]
  [./disp_y]
    block = 2
    variable = disp_y
    value = ${fparse starting_point + offset}
    type = ConstantIC
  [../]
[]

[Kernels]
  [./disp_x]
    type = MatDiffusion
    variable = disp_x
  [../]
  [./disp_y]
    type = MatDiffusion
    variable = disp_y
  [../]
[]


[Constraints]
  [normal_lm]
    type = NormalMortarLMMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    slave_disp_y = disp_y
    use_displaced_mesh = true
    compute_primal_residuals = false
    ncp_function_type = min
  []
  [normal_x]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [normal_y]
    type = NormalMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = normal_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [tangential_lm]
    type = TangentialMortarLMMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = tangential_lm
    slave_variable = disp_x
    slave_disp_y = disp_y
    use_displaced_mesh = true
    compute_primal_residuals = false
    contact_pressure = normal_lm
    friction_coefficient = .1
    ncp_function_type = min
  []
  [tangential_x]
    type = TangentialMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = tangential_lm
    slave_variable = disp_x
    component = x
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
  [tangential_y]
    type = TangentialMortarMechanicalContact
    master_boundary = 20
    slave_boundary = 10
    master_subdomain = 4
    slave_subdomain = 3
    variable = tangential_lm
    slave_variable = disp_y
    component = y
    use_displaced_mesh = true
    compute_lm_residuals = false
  []
[]

[BCs]
  [./botx]
    type = DirichletBC
    variable = disp_x
    preset = false
    boundary = 40
    value = 0.0
  [../]
  [./boty]
    type = DirichletBC
    variable = disp_y
    preset = false
    boundary = 40
    value = 0.0
  [../]
  [./topy]
    type = FunctionDirichletBC
    variable = disp_y
    preset = false
    boundary = 30
    function = '${starting_point} * cos(2 * pi / 40 * t) + ${offset}'
  [../]
  [./leftx]
    type = FunctionDirichletBC
    variable = disp_x
    preset = false
    boundary = 50
    function = '1e-2 * t'
  [../]
[]

[Executioner]
  type = Transient
  end_time = 200
  dt = 5
  dtmin = .1
  solve_type = 'PJFNK'
  petsc_options = '-snes_converged_reason -ksp_converged_reason -pc_svd_monitor -snes_linesearch_monitor -snes_ksp_ew'
  petsc_options_iname = '-pc_type -pc_factor_shift_type -pc_factor_shift_amount -mat_mffd_err'
  petsc_options_value = 'lu       NONZERO               1e-15                   1e-5'
  l_max_its = 30
  nl_max_its = 20
  line_search = 'none'
[]

[Debug]
  show_var_residual_norms = true
[]

[Outputs]
  exodus = true
[]

[Preconditioning]
  [./smp]
    type = SMP
    full = true
  [../]
[]

[Postprocessors]
  [./num_nl]
    type = NumNonlinearIterations
  [../]
  [./cumulative]
    type = CumulativeValuePostprocessor
    postprocessor = num_nl
  [../]
  [contact]
    type = ContactDOFSetSize
    variable = normal_lm
    subdomain = '3'
    execute_on = 'nonlinear timestep_end'
  []
[]

modules/stochastic_tools/test/tests/vectorpostprocessors/multiple_stochastic_results/sub.i

[Mesh]
  type = GeneratedMesh
  dim = 1
  nx = 10
[]

[Variables]
  [u]
  []
[]

[Kernels]
  [diff]
    type = Diffusion
    variable = u
  []
  [time]
    type = TimeDerivative
    variable = u
  []
[]

[BCs]
  [left]
    type = DirichletBC
    variable = u
    boundary = left
    value = 0
  []
  [right]
    type = DirichletBC
    variable = u
    boundary = right
    value = 1
  []
[]

[Executioner]
  type = Transient
  num_steps = 5
  dt = 0.01
  solve_type = PJFNK
  petsc_options_iname = '-pc_type -pc_hypre_type'
  petsc_options_value = 'hypre boomeramg'
[]

[Controls]
  [stochastic]
    type = SamplerReceiver
  []
[]

[Postprocessors]
  [avg]
    type = AverageNodalVariableValue
    variable = u
  []
[]

[Outputs]
[]

modules/tensor_mechanics/test/tests/mohr_coulomb/random_planar.i

# apply many random large deformations, checking that the algorithm returns correctly to
# the yield surface each time.


[Mesh]
  type = GeneratedMesh
  dim = 3
  nx = 100
  ny = 1250
  nz = 1
  xmin = 0
  xmax = 100
  ymin = 0
  ymax = 1250
  zmin = 0
  zmax = 1
[]


[Variables]
  [./disp_x]
  [../]
  [./disp_y]
  [../]
  [./disp_z]
  [../]
[]

[Kernels]
  [./TensorMechanics]
    displacements = 'disp_x disp_y disp_z'
  [../]
[]


[ICs]
  [./x]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_x
  [../]
  [./y]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_y
  [../]
  [./z]
    type = RandomIC
    min = -0.1
    max = 0.1
    variable = disp_z
  [../]
[]

[BCs]
  [./x]
    type = FunctionDirichletBC
    variable = disp_x
    boundary = 'front back'
    function = '0'
  [../]
  [./y]
    type = FunctionDirichletBC
    variable = disp_y
    boundary = 'front back'
    function = '0'
  [../]
  [./z]
    type = FunctionDirichletBC
    variable = disp_z
    boundary = 'front back'
    function = '0'
  [../]
[]

[AuxVariables]
  [./yield_fcn]
    order = CONSTANT
    family = MONOMIAL
  [../]
  [./iter]
    order = CONSTANT
    family = MONOMIAL
  [../]
[]

[AuxKernels]
  [./yield_fcn_auxk]
    type = MaterialStdVectorAux
    index = 0
    property = plastic_yield_function
    variable = yield_fcn
  [../]
  [./iter]
    type = MaterialRealAux
    property = plastic_NR_iterations
    variable = iter
  [../]
[]

[Postprocessors]
  [./yield_fcn_at_zero]
    type = PointValue
    point = '0 0 0'
    variable = yield_fcn
    outputs = 'console'
  [../]
  [./should_be_zero]
    type = FunctionValuePostprocessor
    function = should_be_zero_fcn
  [../]
  [./av_iter]
    type = ElementAverageValue
    variable = iter
    outputs = 'console'
  [../]
[]

[Functions]
  [./should_be_zero_fcn]
    type = ParsedFunction
    value = 'if(a<1E-3,0,a)'
    vars = 'a'
    vals = 'yield_fcn_at_zero'
  [../]
[]

[UserObjects]
  [./coh]
    type = TensorMechanicsHardeningCubic
    value_0 = 1000
    value_residual = 100
    internal_limit = 4
  [../]
  [./phi]
    type = TensorMechanicsHardeningCubic
    value_0 = 0.8
    value_residual = 0.3
    internal_limit = 2
  [../]
  [./psi]
    type = TensorMechanicsHardeningConstant
    value = 15
    convert_to_radians = true
  [../]
  [./mc]
    type = TensorMechanicsPlasticMohrCoulombMulti
    cohesion = coh
    friction_angle = phi
    dilation_angle = psi
    yield_function_tolerance = 1E-3
    shift = 1E-10
    internal_constraint_tolerance = 1E-6
  [../]
[]

[Materials]
  [./elasticity_tensor]
    type = ComputeElasticityTensor
    block = 0
    fill_method = symmetric_isotropic
    C_ijkl = '0.7E7 1E7'
  [../]
  [./strain]
    type = ComputeFiniteStrain
    block = 0
    displacements = 'disp_x disp_y disp_z'
  [../]
  [./mc]
    type = ComputeMultiPlasticityStress
    block = 0
    ep_plastic_tolerance = 1E-10
    plastic_models = mc
    min_stepsize = 1
    max_stepsize_for_dumb = 1
  [../]
[]


[Executioner]
  end_time = 1
  dt = 1
  type = Transient
[]


[Outputs]
  file_base = random_planar
  exodus = false
  [./csv]
    type = CSV
    [../]
[]

Child Objects

test/include/executioners/AdaptAndModify.h

test/include/executioners/AdaptAndModify.h

// This file is part of the MOOSE framework
// https://www.mooseframework.org
//
// All rights reserved, see COPYRIGHT for full restrictions
// https://github.com/idaholab/moose/blob/master/COPYRIGHT
//
// Licensed under LGPL 2.1, please see LICENSE for details
// https://www.gnu.org/licenses/lgpl-2.1.html

#pragma once

#include "Transient.h"

class AdaptAndModify : public Transient
{
public:
  static InputParameters validParams();

  AdaptAndModify(const InputParameters & parameters);

  virtual void incrementStepOrReject();

  virtual void endStep(Real input_time = -1.0);

protected:
  unsigned int _adapt_cycles;
};

Normal Usage
Load Steps
Quasi - Transient
Solving To Steady State
Input Parameters
Input Files
Child Objects

Application Usage

Physics and Syntax

Application Development

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